Instructions to use BSC-LT/MrBERT-biomed with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use BSC-LT/MrBERT-biomed with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="BSC-LT/MrBERT-biomed")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("BSC-LT/MrBERT-biomed") model = AutoModelForMaskedLM.from_pretrained("BSC-LT/MrBERT-biomed", device_map="auto") - Notebooks
- Google Colab
- Kaggle
update model
Browse files- README.md +18 -21
- config.json +6 -4
- model.safetensors +2 -2
- special_tokens_map.json +5 -2
- tokenizer.json +2 -2
- tokenizer_config.json +2 -1
README.md
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@@ -51,36 +51,33 @@ Training Hyperparemeters
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>>> unmasker = pipeline('fill-mask', model='BSC-LT/MrBERT-biomed')
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>>> pprint(unmasker("El
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'hepatotoxicidad clínicamente relevante.',
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'token': 215060,
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'token_str': 'esteroides'},
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{'score': 0.
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'sequence': 'El
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'
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'
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'token': 8976,
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'token_str': 'AS'}]
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>>> pprint(unmasker("Prolonged use of<mask>can cause hepatotoxicity.", top_k=3))
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[{'score': 0.
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'sequence': 'Prolonged use of steroids can cause hepatotoxicity.',
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'token': 232800,
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'token_str': 'steroids'},
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{'score': 0.
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'sequence': 'Prolonged use of drugs can cause hepatotoxicity.',
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'token': 101507,
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'token_str': 'drugs'},
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{'score': 0.
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'sequence': 'Prolonged use of
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'token':
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'token_str': '
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```
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## EVALUATION: Retrieval
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>>> unmasker = pipeline('fill-mask', model='BSC-LT/MrBERT-biomed')
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>>> pprint(unmasker("El uso prolongado de<mask>puede causar toxicidad hepática.",top_k=3))
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[{'score': 0.19885338842868805,
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'sequence': 'El uso prolongado de esteroides puede causar toxicidad '
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'hepática.',
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'token': 215060,
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'token_str': 'esteroides'},
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{'score': 0.03336358070373535,
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'sequence': 'El uso prolongado de insulina puede causar toxicidad hepática.',
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'token': 131044,
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'token_str': 'insulina'},
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{'score': 0.022234393283724785,
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'sequence': 'El uso prolongado de drogas puede causar toxicidad hepática.',
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'token': 99191,
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'token_str': 'drogas'}]
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>>> pprint(unmasker("Prolonged use of<mask>can cause hepatotoxicity.", top_k=3))
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[{'score': 0.10918917506933212,
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'sequence': 'Prolonged use of steroids can cause hepatotoxicity.',
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'token': 232800,
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'token_str': 'steroids'},
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{'score': 0.08295559883117676,
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'sequence': 'Prolonged use of drugs can cause hepatotoxicity.',
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'token': 101507,
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'token_str': 'drugs'},
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{'score': 0.049813270568847656,
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'sequence': 'Prolonged use of alcohol can cause hepatotoxicity.',
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'token': 52167,
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'token_str': 'alcohol'}]
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```
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## EVALUATION: Retrieval
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config.json
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"cls_token_id": 1,
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"decoder_bias": true,
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"deterministic_flash_attn": false,
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"embedding_dropout": 0.0,
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"eos_token_id": 2,
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"global_attn_every_n_layers": 3,
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"num_hidden_layers": 22,
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"pad_token_id": 3,
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"position_embedding_type": "absolute",
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"sep_token_id": 2,
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"
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"
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"transformers_version": "4.
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"vocab_size": 256128
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}
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"cls_token_id": 1,
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"decoder_bias": true,
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"deterministic_flash_attn": false,
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"dtype": "float32",
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"embedding_dropout": 0.0,
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"eos_token_id": 2,
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"global_attn_every_n_layers": 3,
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"num_hidden_layers": 22,
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"pad_token_id": 3,
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"position_embedding_type": "absolute",
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"repad_logits_with_grad": false,
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"sep_token_id": 2,
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"sparse_pred_ignore_index": -100,
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"sparse_prediction": false,
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"transformers_version": "4.56.2",
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"vocab_size": 256128
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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size
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version https://git-lfs.github.com/spec/v1
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oid sha256:a718585c672ab03e89af6872c1d7bf498b68e09a7586ecf77e3c6a2c6c8d3dfe
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size 1231552936
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special_tokens_map.json
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{
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"bos_token": {
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"content": "<s>",
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"lstrip": false,
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},
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"mask_token": {
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"content": "<mask>",
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"lstrip":
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"normalized": false,
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"rstrip": false,
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"single_word": false
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"rstrip": false,
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"single_word": false
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}
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}
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{
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"additional_special_tokens": [
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"<mask>"
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],
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"bos_token": {
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"content": "<s>",
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"lstrip": false,
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},
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"mask_token": {
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"content": "<mask>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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"rstrip": false,
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"single_word": false
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}
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}
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tokenizer.json
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version https://git-lfs.github.com/spec/v1
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size
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version https://git-lfs.github.com/spec/v1
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oid sha256:641ca1224e2bfab63b3df7d6c3002384c358e1f28497741c6b943304d15ca9c2
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size 37007965
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tokenizer_config.json
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"bos_token": "<s>",
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"clean_up_tokenization_spaces": false,
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"eos_token": "</s>",
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"
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"legacy": true,
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"model_max_length": 8192,
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"pad_token": "<pad>",
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"sp_model_kwargs": {},
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"bos_token": "<s>",
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"clean_up_tokenization_spaces": false,
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"eos_token": "</s>",
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"extra_special_tokens": {},
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"legacy": true,
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"mask_token": "<mask>",
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"model_max_length": 8192,
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"pad_token": "<pad>",
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"sp_model_kwargs": {},
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