Token Classification
Transformers
PyTorch
Safetensors
Spanish
roberta
biomedical
clinical
EHR
spanish
symptoms
Eval Results (legacy)
Instructions to use BSC-NLP4BIA/bsc-bio-ehr-es-symptemist with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use BSC-NLP4BIA/bsc-bio-ehr-es-symptemist with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("token-classification", model="BSC-NLP4BIA/bsc-bio-ehr-es-symptemist")# Load model directly from transformers import AutoTokenizer, AutoModelForTokenClassification tokenizer = AutoTokenizer.from_pretrained("BSC-NLP4BIA/bsc-bio-ehr-es-symptemist") model = AutoModelForTokenClassification.from_pretrained("BSC-NLP4BIA/bsc-bio-ehr-es-symptemist", device_map="auto") - Notebooks
- Google Colab
- Kaggle
Update README.md
Browse files
README.md
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@@ -13,22 +13,31 @@ Model trained on the [SympTEMIST](https://doi.org/10.5281/zenodo.10635215) corpu
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Please cite the following works:
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Please cite the following works:
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```
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@inproceedings{symptemist,
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author = {Lima-L{\'o}pez, Salvador and Farr{\'e}-Maduell, Eul{\`a}lia and Gasco-S{\'a}nchez, Luis and Rodr{\'i}guez-Miret, Jan and Krallinger, Martin},
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title = {{Overview of SympTEMIST at BioCreative VIII: Corpus, Guidelines and Evaluation of Systems for the Detection and Normalization of Symptoms, Signs and Findings from Text}},
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booktitle = {Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models},
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year = 2023
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}
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@misc{carmen_physionet,
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author = {Farre Maduell, Eulalia and Lima-Lopez, Salvador and Frid, Santiago Andres and Conesa, Artur and Asensio, Elisa and Lopez-Rueda, Antonio and Arino, Helena and Calvo, Elena and Bertran, Maria Jesús and Marcos, Maria Angeles and Nofre Maiz, Montserrat and Tañá Velasco, Laura and Marti, Antonia and Farreres, Ricardo and Pastor, Xavier and Borrat Frigola, Xavier and Krallinger, Martin},
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title = {{CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools (version 1.0.1)}},
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year = {2024},
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publisher = {PhysioNet},
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url = {https://doi.org/10.13026/x7ed-9r91}
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}
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@article{physionet,
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author = {Ary L. Goldberger and Luis A. N. Amaral and Leon Glass and Jeffrey M. Hausdorff and Plamen Ch. Ivanov and Roger G. Mark and Joseph E. Mietus and George B. Moody and Chung-Kang Peng and H. Eugene Stanley },
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title = {PhysioBank, PhysioToolkit, and PhysioNet },
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journal = {Circulation},
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volume = {101},
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number = {23},
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pages = {e215-e220},
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year = {2000},
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doi = {10.1161/01.CIR.101.23.e215},
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URL = {https://www.ahajournals.org/doi/abs/10.1161/01.CIR.101.23.e215}
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}
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```
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