Update modeling.py
Browse files- modeling.py +4 -773
modeling.py
CHANGED
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@@ -3,7 +3,6 @@ from typing import Dict, List, Optional, Tuple, Union
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import torch
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import torch.nn as nn
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from torchcrf import CRF
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from transformers import PretrainedConfig, PreTrainedModel
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from transformers.modeling_outputs import TokenClassifierOutput
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@@ -16,8 +15,6 @@ except Exception:
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EuroBertModel = None
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print("COULD NOT IMPORT EUROBERT MODEL")
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# Large negative number for masking impossible transitions
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LARGE_NEGATIVE_NUMBER = -1e9
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NUM_PER_LAYER = 16
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@@ -64,727 +61,11 @@ def _build_backbone_from_config(config):
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return backbone, backbone_name
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class MultiHeadCRFConfig(PretrainedConfig):
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"""
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Configuration class for Multi-Head CRF models.
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"""
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model_type = "multihead-crf-tagger"
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def __init__(
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self,
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entity_types: Optional[List[str]] = None,
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number_of_layers_per_head: int = 1,
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crf_reduction: str = "mean",
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freeze_backbone: bool = False,
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num_frozen_encoders: int = 0,
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classifier_dropout: float = 0.1,
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classifier_hidden_layers: Optional[Tuple] = None,
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class_weights: Optional[List[float]] = None,
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backbone_model_name: Optional[str] = None,
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**kwargs,
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):
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self.entity_types = entity_types or []
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self.number_of_layers_per_head = number_of_layers_per_head
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self.crf_reduction = crf_reduction
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self.freeze_backbone = freeze_backbone
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self.num_frozen_encoders = num_frozen_encoders
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self.classifier_dropout = classifier_dropout
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self.classifier_hidden_layers = classifier_hidden_layers
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self.class_weights = class_weights
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self.backbone_model_name = backbone_model_name
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super().__init__(**kwargs)
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class MultiHeadCRF(nn.Module):
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"""
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Custom CRF implementation with BIO transition masking.
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"""
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def __init__(self, num_tags: int, batch_first: bool = True) -> None:
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if num_tags <= 0:
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raise ValueError(f"invalid number of tags: {num_tags}")
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super().__init__()
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self.num_tags = num_tags
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self.batch_first = batch_first
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self.start_transitions = nn.Parameter(torch.empty(num_tags))
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self.end_transitions = nn.Parameter(torch.empty(num_tags))
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self.transitions = nn.Parameter(torch.empty(num_tags, num_tags))
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self.reset_parameters()
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self.mask_impossible_transitions()
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def reset_parameters(self) -> None:
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nn.init.uniform_(self.start_transitions, -0.1, 0.1)
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nn.init.uniform_(self.end_transitions, -0.1, 0.1)
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nn.init.uniform_(self.transitions, -0.1, 0.1)
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def mask_impossible_transitions(self) -> None:
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with torch.no_grad():
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if self.num_tags > 2:
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self.start_transitions[2] = LARGE_NEGATIVE_NUMBER
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self.transitions[0][2] = LARGE_NEGATIVE_NUMBER
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if self.num_tags > 3:
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self.start_transitions[3] = LARGE_NEGATIVE_NUMBER
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for i in range(3):
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self.transitions[i][3] = LARGE_NEGATIVE_NUMBER
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for i in range(3):
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self.transitions[3][i] = LARGE_NEGATIVE_NUMBER
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def __repr__(self) -> str:
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return f"{self.__class__.__name__}(num_tags={self.num_tags})"
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def forward(
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self,
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emissions: torch.Tensor,
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tags: torch.Tensor,
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mask: Optional[torch.Tensor] = None,
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reduction: str = "mean",
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) -> torch.Tensor:
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self._validate(emissions, tags=tags, mask=mask)
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if reduction not in ("none", "sum", "mean", "token_mean"):
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raise ValueError(f"invalid reduction: {reduction}")
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if mask is None:
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mask = torch.ones_like(tags, dtype=torch.uint8)
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device = emissions.device
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tags = tags.to(device)
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mask = mask.to(device)
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if self.batch_first:
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emissions = emissions.transpose(0, 1)
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tags = tags.transpose(0, 1)
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mask = mask.transpose(0, 1)
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numerator = self._compute_score(emissions, tags, mask)
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denominator = self._compute_normalizer(emissions, mask)
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llh = numerator - denominator
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nllh = -llh
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if reduction == "none":
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return nllh
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if reduction == "sum":
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return nllh.sum()
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if reduction == "mean":
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return nllh.mean()
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return nllh.sum() / mask.type_as(emissions).sum()
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def decode(
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self, emissions: torch.Tensor, mask: Optional[torch.Tensor] = None
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) -> List[List[int]]:
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self._validate(emissions, mask=mask)
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if mask is None:
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mask = emissions.new_ones(emissions.shape[:2], dtype=torch.uint8)
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if self.batch_first:
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emissions = emissions.transpose(0, 1)
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mask = mask.transpose(0, 1)
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return self._viterbi_decode(emissions, mask)
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def _validate(
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self,
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emissions: torch.Tensor,
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tags: Optional[torch.Tensor] = None,
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mask: Optional[torch.Tensor] = None,
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) -> None:
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if emissions.dim() != 3:
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raise ValueError(
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f"emissions must have dimension of 3, got {emissions.dim()}"
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)
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if emissions.size(2) != self.num_tags:
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raise ValueError(
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f"expected last dimension of emissions is {self.num_tags}, "
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f"got {emissions.size(2)}"
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)
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if tags is not None and emissions.shape[:2] != tags.shape:
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raise ValueError(
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"the first two dimensions of emissions and tags must match, "
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f"got {tuple(emissions.shape[:2])} and {tuple(tags.shape)}"
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)
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if mask is not None:
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if emissions.shape[:2] != mask.shape:
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raise ValueError(
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"the first two dimensions of emissions and mask must match, "
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f"got {tuple(emissions.shape[:2])} and {tuple(mask.shape)}"
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)
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no_empty_seq = not self.batch_first and mask[0].all()
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no_empty_seq_bf = self.batch_first and mask[:, 0].all()
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if not no_empty_seq and not no_empty_seq_bf:
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raise ValueError("mask of the first timestep must all be on")
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def _compute_score(
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self, emissions: torch.Tensor, tags: torch.Tensor, mask: torch.Tensor
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) -> torch.Tensor:
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assert emissions.dim() == 3 and tags.dim() == 2
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assert emissions.shape[:2] == tags.shape
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assert emissions.size(2) == self.num_tags
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assert mask.shape == tags.shape
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assert mask[0].all()
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device = emissions.device
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tags = tags.to(device)
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mask = mask.to(device)
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seq_length, batch_size = tags.shape
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mask = mask.type_as(emissions)
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batch_indices = torch.arange(batch_size, device=device)
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score = self.start_transitions[tags[0]]
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score += emissions[0, batch_indices, tags[0]]
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for i in range(1, seq_length):
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score += self.transitions[tags[i - 1], tags[i]] * mask[i]
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score += emissions[i, batch_indices, tags[i]] * mask[i]
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seq_ends = mask.long().sum(dim=0) - 1
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last_tags = tags[seq_ends, batch_indices]
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score += self.end_transitions[last_tags]
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return score
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def _compute_normalizer(
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self, emissions: torch.Tensor, mask: torch.Tensor
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) -> torch.Tensor:
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assert emissions.dim() == 3 and mask.dim() == 2
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assert emissions.shape[:2] == mask.shape
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assert emissions.size(2) == self.num_tags
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assert mask[0].all()
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seq_length = emissions.size(0)
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score = self.start_transitions + emissions[0]
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for i in range(1, seq_length):
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broadcast_score = score.unsqueeze(2)
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broadcast_emissions = emissions[i].unsqueeze(1)
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next_score = broadcast_score + self.transitions + broadcast_emissions
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next_score = torch.logsumexp(next_score, dim=1)
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score = torch.where(mask[i].unsqueeze(1).bool(), next_score, score)
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score += self.end_transitions
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return torch.logsumexp(score, dim=1)
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def _viterbi_decode(
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self, emissions: torch.Tensor, mask: torch.Tensor
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) -> List[List[int]]:
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assert emissions.dim() == 3 and mask.dim() == 2
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assert emissions.shape[:2] == mask.shape
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assert emissions.size(2) == self.num_tags
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assert mask[0].all()
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seq_length, batch_size = mask.shape
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score = self.start_transitions + emissions[0]
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history = []
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for i in range(1, seq_length):
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broadcast_score = score.unsqueeze(2)
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broadcast_emission = emissions[i].unsqueeze(1)
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next_score = broadcast_score + self.transitions + broadcast_emission
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next_score, indices = next_score.max(dim=1)
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score = torch.where(mask[i].unsqueeze(1).bool(), next_score, score)
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history.append(indices)
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score += self.end_transitions
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seq_ends = mask.long().sum(dim=0) - 1
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best_tags_list = []
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for idx in range(batch_size):
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_, best_last_tag = score[idx].max(dim=0)
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best_tags = [best_last_tag.item()]
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for hist in reversed(history[: seq_ends[idx]]):
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best_last_tag = hist[idx][best_tags[-1]]
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best_tags.append(best_last_tag.item())
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best_tags.reverse()
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best_tags_list.append(best_tags)
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return best_tags_list
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class TokenClassificationModelCRF(PreTrainedModel):
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"""
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Custom token classification model with CRF layer and configurable classifier head.
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"""
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def __init__(
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self,
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config,
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base_model=None,
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freeze_backbone=False,
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classifier_hidden_layers=None,
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classifier_dropout=0.1,
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):
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super().__init__(config)
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self.config = config
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self.num_labels = config.num_labels
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if base_model is None:
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self.roberta, backbone_name = _build_backbone_from_config(config)
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else:
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if hasattr(base_model, "roberta"):
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self.roberta = base_model.roberta
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else:
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self.roberta = base_model
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backbone_name = (
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getattr(getattr(self.roberta, "config", None), "_name_or_path", None)
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or getattr(config, "backbone_model_name", None)
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or getattr(config, "_name_or_path", None)
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)
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if getattr(config, "backbone_model_name", None) is None:
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config.backbone_model_name = backbone_name
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self.lm_output_size = self.roberta.config.hidden_size
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self.config.freeze_backbone = freeze_backbone
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self.config.classifier_hidden_layers = classifier_hidden_layers
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| 345 |
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self.config.classifier_dropout = classifier_dropout
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| 347 |
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if freeze_backbone:
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print("+" * 30, "\n\n", "Freezing backbone...", "+" * 30, "\n\n")
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| 349 |
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for param in self.roberta.parameters():
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param.requires_grad = False
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self.roberta.eval()
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else:
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print("+" * 30, "\n\n", "NOT Freezing backbone...", "+" * 30, "\n\n")
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self.roberta.train(True)
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| 356 |
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self.dropout = nn.Dropout(getattr(config, "hidden_dropout_prob", 0.1))
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| 357 |
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self.crf = CRF(self.num_labels, batch_first=True)
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| 358 |
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self._build_classifier_head(classifier_hidden_layers, classifier_dropout)
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| 360 |
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self.post_init()
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| 362 |
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def _build_classifier_head(self, hidden_layers, dropout_rate):
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layers = []
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input_size = self.lm_output_size
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| 366 |
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if not hidden_layers:
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self.classifier = nn.Sequential(
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nn.Dropout(dropout_rate), nn.Linear(input_size, self.num_labels)
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)
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return
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| 372 |
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for hidden_size in hidden_layers:
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layers.append(nn.Linear(input_size, hidden_size))
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layers.append(nn.ReLU())
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| 375 |
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layers.append(nn.Dropout(dropout_rate))
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| 376 |
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input_size = hidden_size
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| 377 |
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| 378 |
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layers.append(nn.Linear(input_size, self.num_labels))
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| 379 |
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self.classifier = nn.Sequential(*layers)
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| 380 |
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| 381 |
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def forward(
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| 382 |
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self,
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| 383 |
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input_ids: Optional[torch.LongTensor] = None,
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| 384 |
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attention_mask: Optional[torch.FloatTensor] = None,
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| 385 |
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token_type_ids: Optional[torch.LongTensor] = None,
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| 386 |
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position_ids: Optional[torch.LongTensor] = None,
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| 387 |
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head_mask: Optional[torch.FloatTensor] = None,
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| 388 |
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inputs_embeds: Optional[torch.FloatTensor] = None,
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| 389 |
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labels: Optional[torch.LongTensor] = None,
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| 390 |
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output_attentions: Optional[bool] = None,
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| 391 |
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output_hidden_states: Optional[bool] = None,
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| 392 |
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return_dict: Optional[bool] = None,
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| 393 |
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**kwargs,
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| 394 |
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) -> Union[Tuple[torch.Tensor], TokenClassifierOutput]:
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| 395 |
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return_dict = (
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return_dict if return_dict is not None else self.config.use_return_dict
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)
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try:
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outputs = self.roberta(
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input_ids,
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attention_mask=attention_mask,
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token_type_ids=token_type_ids,
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| 404 |
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position_ids=position_ids,
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| 405 |
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head_mask=head_mask,
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| 406 |
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inputs_embeds=inputs_embeds,
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| 407 |
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output_attentions=output_attentions,
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| 408 |
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output_hidden_states=output_hidden_states,
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| 409 |
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return_dict=return_dict,
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| 410 |
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)
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| 411 |
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except TypeError:
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| 412 |
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outputs = self.roberta(
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| 413 |
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input_ids,
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| 414 |
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attention_mask=attention_mask,
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| 415 |
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position_ids=position_ids,
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| 416 |
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inputs_embeds=inputs_embeds,
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| 417 |
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output_attentions=output_attentions,
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| 418 |
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output_hidden_states=output_hidden_states,
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| 419 |
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return_dict=return_dict,
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)
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| 421 |
-
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sequence_output = self.dropout(outputs.last_hidden_state)
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| 423 |
-
logits = self.classifier(sequence_output)
|
| 424 |
-
|
| 425 |
-
loss = None
|
| 426 |
-
if labels is not None:
|
| 427 |
-
labels_long = labels.long()
|
| 428 |
-
if attention_mask is not None:
|
| 429 |
-
mask = attention_mask.bool()
|
| 430 |
-
loss = -self.crf(logits, labels_long, mask=mask, reduction="mean")
|
| 431 |
-
else:
|
| 432 |
-
if not getattr(self, "_warned_no_attention_mask", False):
|
| 433 |
-
print(
|
| 434 |
-
"WARNING: attention_mask is None; CRF loss will include padding tokens."
|
| 435 |
-
)
|
| 436 |
-
self._warned_no_attention_mask = True
|
| 437 |
-
loss = -self.crf(logits, labels_long, reduction="mean")
|
| 438 |
-
|
| 439 |
-
if not return_dict:
|
| 440 |
-
output = (logits,) + outputs[2:]
|
| 441 |
-
return ((loss,) + output) if loss is not None else output
|
| 442 |
-
|
| 443 |
-
return TokenClassifierOutput(
|
| 444 |
-
loss=loss,
|
| 445 |
-
logits=logits,
|
| 446 |
-
hidden_states=outputs.hidden_states,
|
| 447 |
-
attentions=outputs.attentions,
|
| 448 |
-
)
|
| 449 |
-
|
| 450 |
-
@property
|
| 451 |
-
def device_info(self):
|
| 452 |
-
return next(self.parameters()).device
|
| 453 |
-
|
| 454 |
-
def get_input_embeddings(self):
|
| 455 |
-
return self.roberta.get_input_embeddings()
|
| 456 |
-
|
| 457 |
-
def set_input_embeddings(self, value):
|
| 458 |
-
self.roberta.set_input_embeddings(value)
|
| 459 |
-
|
| 460 |
-
@classmethod
|
| 461 |
-
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
|
| 462 |
-
config = kwargs.pop("config", None)
|
| 463 |
-
if config is None:
|
| 464 |
-
from transformers import AutoConfig
|
| 465 |
-
|
| 466 |
-
config = AutoConfig.from_pretrained(pretrained_model_name_or_path, **kwargs)
|
| 467 |
-
|
| 468 |
-
freeze_backbone = getattr(config, "freeze_backbone", False)
|
| 469 |
-
classifier_hidden_layers = getattr(config, "classifier_hidden_layers", None)
|
| 470 |
-
classifier_dropout = getattr(config, "classifier_dropout", 0.1)
|
| 471 |
-
|
| 472 |
-
model = cls(
|
| 473 |
-
config=config,
|
| 474 |
-
freeze_backbone=freeze_backbone,
|
| 475 |
-
classifier_hidden_layers=classifier_hidden_layers,
|
| 476 |
-
classifier_dropout=classifier_dropout,
|
| 477 |
-
)
|
| 478 |
-
|
| 479 |
-
try:
|
| 480 |
-
state_dict = torch.load(
|
| 481 |
-
f"{pretrained_model_name_or_path}/pytorch_model.bin", map_location="cpu"
|
| 482 |
-
)
|
| 483 |
-
model.load_state_dict(state_dict)
|
| 484 |
-
except Exception:
|
| 485 |
-
print(
|
| 486 |
-
"Warning: Could not load pre-trained weights. Using randomly initialized model."
|
| 487 |
-
)
|
| 488 |
-
|
| 489 |
-
return model
|
| 490 |
-
|
| 491 |
-
|
| 492 |
-
class TokenClassificationModelMultiHeadCRF(PreTrainedModel):
|
| 493 |
-
"""
|
| 494 |
-
Multi-Head CRF model for token classification with multiple entity types.
|
| 495 |
-
"""
|
| 496 |
-
|
| 497 |
-
config_class = MultiHeadCRFConfig
|
| 498 |
-
base_model_prefix = "roberta"
|
| 499 |
-
_keys_to_ignore_on_load_unexpected = [r"pooler"]
|
| 500 |
-
|
| 501 |
-
def __init__(self, config, base_model=None, freeze_backbone=None):
|
| 502 |
-
super().__init__(config)
|
| 503 |
-
self.config = config
|
| 504 |
-
|
| 505 |
-
self.entity_types = getattr(config, "entity_types", [])
|
| 506 |
-
if not self.entity_types:
|
| 507 |
-
raise ValueError("entity_types must be provided in config")
|
| 508 |
-
|
| 509 |
-
self.num_labels = config.num_labels
|
| 510 |
-
self.number_of_layers_per_head = getattr(config, "number_of_layers_per_head", 1)
|
| 511 |
-
self.crf_reduction = getattr(config, "crf_reduction", "mean")
|
| 512 |
-
freeze_backbone = (
|
| 513 |
-
freeze_backbone
|
| 514 |
-
if freeze_backbone is not None
|
| 515 |
-
else getattr(config, "freeze_backbone", False)
|
| 516 |
-
)
|
| 517 |
-
self.num_frozen_encoders = getattr(config, "num_frozen_encoders", 0)
|
| 518 |
-
classifier_dropout = getattr(config, "classifier_dropout", 0.1)
|
| 519 |
-
|
| 520 |
-
if base_model is None:
|
| 521 |
-
self.roberta, backbone_name = _build_backbone_from_config(config)
|
| 522 |
-
else:
|
| 523 |
-
if hasattr(base_model, "roberta"):
|
| 524 |
-
self.roberta = base_model.roberta
|
| 525 |
-
else:
|
| 526 |
-
self.roberta = base_model
|
| 527 |
-
backbone_name = (
|
| 528 |
-
getattr(getattr(self.roberta, "config", None), "_name_or_path", None)
|
| 529 |
-
or getattr(config, "backbone_model_name", None)
|
| 530 |
-
or getattr(config, "_name_or_path", None)
|
| 531 |
-
)
|
| 532 |
-
if getattr(config, "backbone_model_name", None) is None:
|
| 533 |
-
config.backbone_model_name = backbone_name
|
| 534 |
-
|
| 535 |
-
self.hidden_size = self.roberta.config.hidden_size
|
| 536 |
-
self.dropout = nn.Dropout(getattr(config, "hidden_dropout_prob", 0.1))
|
| 537 |
-
|
| 538 |
-
print(f"Creating Multi-Head CRF with entity types: {sorted(self.entity_types)}")
|
| 539 |
-
|
| 540 |
-
for entity_type in self.entity_types:
|
| 541 |
-
for i in range(self.number_of_layers_per_head):
|
| 542 |
-
setattr(
|
| 543 |
-
self,
|
| 544 |
-
f"{entity_type}_dense_{i}",
|
| 545 |
-
nn.Linear(self.hidden_size, self.hidden_size),
|
| 546 |
-
)
|
| 547 |
-
setattr(
|
| 548 |
-
self,
|
| 549 |
-
f"{entity_type}_dense_activation_{i}",
|
| 550 |
-
nn.GELU(approximate="none"),
|
| 551 |
-
)
|
| 552 |
-
setattr(
|
| 553 |
-
self, f"{entity_type}_dropout_{i}", nn.Dropout(classifier_dropout)
|
| 554 |
-
)
|
| 555 |
-
|
| 556 |
-
setattr(
|
| 557 |
-
self,
|
| 558 |
-
f"{entity_type}_classifier",
|
| 559 |
-
nn.Linear(self.hidden_size, self.num_labels),
|
| 560 |
-
)
|
| 561 |
-
setattr(
|
| 562 |
-
self,
|
| 563 |
-
f"{entity_type}_crf",
|
| 564 |
-
MultiHeadCRF(num_tags=self.num_labels, batch_first=True),
|
| 565 |
-
)
|
| 566 |
-
|
| 567 |
-
if freeze_backbone:
|
| 568 |
-
self._freeze_backbone()
|
| 569 |
-
|
| 570 |
-
self.post_init()
|
| 571 |
-
|
| 572 |
-
def _freeze_backbone(self):
|
| 573 |
-
print("+" * 30, "\n\n", "Freezing backbone...", "+" * 30, "\n\n")
|
| 574 |
-
|
| 575 |
-
for param in self.roberta.embeddings.parameters():
|
| 576 |
-
param.requires_grad = False
|
| 577 |
-
|
| 578 |
-
if self.num_frozen_encoders > 0:
|
| 579 |
-
for _, param in islice(
|
| 580 |
-
self.roberta.encoder.named_parameters(),
|
| 581 |
-
self.num_frozen_encoders * NUM_PER_LAYER,
|
| 582 |
-
):
|
| 583 |
-
param.requires_grad = False
|
| 584 |
-
|
| 585 |
-
def reset_head_parameters(self):
|
| 586 |
-
for entity_type in self.entity_types:
|
| 587 |
-
for i in range(self.number_of_layers_per_head):
|
| 588 |
-
getattr(self, f"{entity_type}_dense_{i}").reset_parameters()
|
| 589 |
-
getattr(self, f"{entity_type}_classifier").reset_parameters()
|
| 590 |
-
getattr(self, f"{entity_type}_crf").reset_parameters()
|
| 591 |
-
getattr(self, f"{entity_type}_crf").mask_impossible_transitions()
|
| 592 |
-
|
| 593 |
-
def forward(
|
| 594 |
-
self,
|
| 595 |
-
input_ids: Optional[torch.LongTensor] = None,
|
| 596 |
-
attention_mask: Optional[torch.FloatTensor] = None,
|
| 597 |
-
token_type_ids: Optional[torch.LongTensor] = None,
|
| 598 |
-
position_ids: Optional[torch.LongTensor] = None,
|
| 599 |
-
head_mask: Optional[torch.FloatTensor] = None,
|
| 600 |
-
inputs_embeds: Optional[torch.FloatTensor] = None,
|
| 601 |
-
labels: Optional[Dict[str, torch.LongTensor]] = None,
|
| 602 |
-
output_attentions: Optional[bool] = None,
|
| 603 |
-
output_hidden_states: Optional[bool] = None,
|
| 604 |
-
return_dict: Optional[bool] = None,
|
| 605 |
-
**kwargs,
|
| 606 |
-
):
|
| 607 |
-
return_dict = (
|
| 608 |
-
return_dict if return_dict is not None else self.config.use_return_dict
|
| 609 |
-
)
|
| 610 |
-
|
| 611 |
-
try:
|
| 612 |
-
outputs = self.roberta(
|
| 613 |
-
input_ids,
|
| 614 |
-
attention_mask=attention_mask,
|
| 615 |
-
token_type_ids=token_type_ids,
|
| 616 |
-
position_ids=position_ids,
|
| 617 |
-
head_mask=head_mask,
|
| 618 |
-
inputs_embeds=inputs_embeds,
|
| 619 |
-
output_attentions=output_attentions,
|
| 620 |
-
output_hidden_states=output_hidden_states,
|
| 621 |
-
return_dict=return_dict,
|
| 622 |
-
)
|
| 623 |
-
except TypeError:
|
| 624 |
-
outputs = self.roberta(
|
| 625 |
-
input_ids,
|
| 626 |
-
attention_mask=attention_mask,
|
| 627 |
-
position_ids=position_ids,
|
| 628 |
-
inputs_embeds=inputs_embeds,
|
| 629 |
-
output_attentions=output_attentions,
|
| 630 |
-
output_hidden_states=output_hidden_states,
|
| 631 |
-
return_dict=return_dict,
|
| 632 |
-
)
|
| 633 |
-
|
| 634 |
-
sequence_output = outputs[0]
|
| 635 |
-
sequence_output = self.dropout(sequence_output)
|
| 636 |
-
|
| 637 |
-
logits = {}
|
| 638 |
-
for entity_type in self.entity_types:
|
| 639 |
-
head_output = sequence_output
|
| 640 |
-
for i in range(self.number_of_layers_per_head):
|
| 641 |
-
head_output = getattr(self, f"{entity_type}_dense_{i}")(head_output)
|
| 642 |
-
head_output = getattr(self, f"{entity_type}_dense_activation_{i}")(
|
| 643 |
-
head_output
|
| 644 |
-
)
|
| 645 |
-
head_output = getattr(self, f"{entity_type}_dropout_{i}")(head_output)
|
| 646 |
-
logits[entity_type] = getattr(self, f"{entity_type}_classifier")(
|
| 647 |
-
head_output
|
| 648 |
-
)
|
| 649 |
-
|
| 650 |
-
if labels is not None:
|
| 651 |
-
losses = {}
|
| 652 |
-
mask = attention_mask.bool() if attention_mask is not None else None
|
| 653 |
-
|
| 654 |
-
for entity_type in self.entity_types:
|
| 655 |
-
if entity_type in labels:
|
| 656 |
-
entity_labels = (
|
| 657 |
-
labels[entity_type].long().to(logits[entity_type].device)
|
| 658 |
-
)
|
| 659 |
-
crf = getattr(self, f"{entity_type}_crf")
|
| 660 |
-
if mask is not None:
|
| 661 |
-
losses[entity_type] = crf(
|
| 662 |
-
logits[entity_type],
|
| 663 |
-
entity_labels,
|
| 664 |
-
mask=mask,
|
| 665 |
-
reduction=self.crf_reduction,
|
| 666 |
-
)
|
| 667 |
-
else:
|
| 668 |
-
if not getattr(self, "_warned_no_attention_mask", False):
|
| 669 |
-
print(
|
| 670 |
-
"WARNING: attention_mask is None; CRF loss will include padding tokens."
|
| 671 |
-
)
|
| 672 |
-
self._warned_no_attention_mask = True
|
| 673 |
-
losses[entity_type] = crf(
|
| 674 |
-
logits[entity_type],
|
| 675 |
-
entity_labels,
|
| 676 |
-
reduction=self.crf_reduction,
|
| 677 |
-
)
|
| 678 |
-
|
| 679 |
-
total_loss = sum(losses.values())
|
| 680 |
-
return total_loss, logits
|
| 681 |
-
|
| 682 |
-
predictions = {}
|
| 683 |
-
mask = attention_mask.bool() if attention_mask is not None else None
|
| 684 |
-
|
| 685 |
-
for entity_type in self.entity_types:
|
| 686 |
-
crf = getattr(self, f"{entity_type}_crf")
|
| 687 |
-
if mask is not None:
|
| 688 |
-
decoded = crf.decode(logits[entity_type], mask=mask)
|
| 689 |
-
else:
|
| 690 |
-
decoded = crf.decode(logits[entity_type])
|
| 691 |
-
predictions[entity_type] = torch.tensor(decoded)
|
| 692 |
-
|
| 693 |
-
return [predictions[ent] for ent in sorted(self.entity_types)]
|
| 694 |
-
|
| 695 |
-
def get_input_embeddings(self):
|
| 696 |
-
return self.roberta.get_input_embeddings()
|
| 697 |
-
|
| 698 |
-
def set_input_embeddings(self, value):
|
| 699 |
-
self.roberta.set_input_embeddings(value)
|
| 700 |
-
|
| 701 |
-
@classmethod
|
| 702 |
-
def from_pretrained(cls, pretrained_model_name_or_path, *model_args, **kwargs):
|
| 703 |
-
import json
|
| 704 |
-
import os
|
| 705 |
-
|
| 706 |
-
config = kwargs.pop("config", None)
|
| 707 |
-
|
| 708 |
-
if config is None:
|
| 709 |
-
config_file = os.path.join(pretrained_model_name_or_path, "config.json")
|
| 710 |
-
if os.path.exists(config_file):
|
| 711 |
-
with open(config_file, "r") as f:
|
| 712 |
-
config_dict = json.load(f)
|
| 713 |
-
config = MultiHeadCRFConfig(**config_dict)
|
| 714 |
-
else:
|
| 715 |
-
from transformers import AutoConfig
|
| 716 |
-
|
| 717 |
-
config = AutoConfig.from_pretrained(
|
| 718 |
-
pretrained_model_name_or_path,
|
| 719 |
-
trust_remote_code=kwargs.get("trust_remote_code", True),
|
| 720 |
-
)
|
| 721 |
-
|
| 722 |
-
roberta_defaults = {
|
| 723 |
-
"layer_norm_eps": 1e-5,
|
| 724 |
-
"hidden_size": 768,
|
| 725 |
-
"num_hidden_layers": 12,
|
| 726 |
-
"num_attention_heads": 12,
|
| 727 |
-
"intermediate_size": 3072,
|
| 728 |
-
"hidden_act": "gelu",
|
| 729 |
-
"hidden_dropout_prob": 0.1,
|
| 730 |
-
"attention_probs_dropout_prob": 0.1,
|
| 731 |
-
"max_position_embeddings": 514,
|
| 732 |
-
"type_vocab_size": 1,
|
| 733 |
-
"initializer_range": 0.02,
|
| 734 |
-
"vocab_size": 52000,
|
| 735 |
-
"pad_token_id": 1,
|
| 736 |
-
"bos_token_id": 0,
|
| 737 |
-
"eos_token_id": 2,
|
| 738 |
-
"position_embedding_type": "absolute",
|
| 739 |
-
"use_cache": True,
|
| 740 |
-
"is_decoder": False,
|
| 741 |
-
"add_cross_attention": False,
|
| 742 |
-
"chunk_size_feed_forward": 0,
|
| 743 |
-
"output_hidden_states": False,
|
| 744 |
-
"output_attentions": False,
|
| 745 |
-
"torchscript": False,
|
| 746 |
-
"tie_word_embeddings": True,
|
| 747 |
-
"return_dict": True,
|
| 748 |
-
"gradient_checkpointing": False,
|
| 749 |
-
"pruned_heads": {},
|
| 750 |
-
"problem_type": None,
|
| 751 |
-
"embedding_size": None,
|
| 752 |
-
}
|
| 753 |
-
|
| 754 |
-
for key, default_value in roberta_defaults.items():
|
| 755 |
-
if not hasattr(config, key) or getattr(config, key) is None:
|
| 756 |
-
setattr(config, key, default_value)
|
| 757 |
-
|
| 758 |
-
freeze_backbone = getattr(config, "freeze_backbone", False)
|
| 759 |
-
model = cls(config=config, freeze_backbone=freeze_backbone)
|
| 760 |
-
|
| 761 |
-
weight_file = os.path.join(pretrained_model_name_or_path, "pytorch_model.bin")
|
| 762 |
-
safetensors_file = os.path.join(
|
| 763 |
-
pretrained_model_name_or_path, "model.safetensors"
|
| 764 |
-
)
|
| 765 |
-
|
| 766 |
-
try:
|
| 767 |
-
if os.path.exists(safetensors_file):
|
| 768 |
-
from safetensors.torch import load_file
|
| 769 |
-
|
| 770 |
-
state_dict = load_file(safetensors_file)
|
| 771 |
-
model.load_state_dict(state_dict)
|
| 772 |
-
elif os.path.exists(weight_file):
|
| 773 |
-
state_dict = torch.load(weight_file, map_location="cpu")
|
| 774 |
-
model.load_state_dict(state_dict)
|
| 775 |
-
else:
|
| 776 |
-
print(
|
| 777 |
-
"Warning: No pre-trained weights found. Using randomly initialized model."
|
| 778 |
-
)
|
| 779 |
-
except Exception as e:
|
| 780 |
-
print(f"Warning: Could not load pre-trained weights: {e}")
|
| 781 |
-
|
| 782 |
-
return model
|
| 783 |
|
| 784 |
|
| 785 |
class MultiHeadConfig(PretrainedConfig):
|
| 786 |
"""
|
| 787 |
-
Configuration class for Multi-Head models
|
| 788 |
"""
|
| 789 |
|
| 790 |
model_type = "multihead-tagger"
|
|
@@ -814,7 +95,7 @@ class MultiHeadConfig(PretrainedConfig):
|
|
| 814 |
|
| 815 |
class TokenClassificationModelMultiHead(PreTrainedModel):
|
| 816 |
"""
|
| 817 |
-
Multi-Head model for token classification with multiple entity types
|
| 818 |
"""
|
| 819 |
|
| 820 |
config_class = MultiHeadConfig
|
|
@@ -1104,7 +385,7 @@ class TokenClassificationModelMultiHead(PreTrainedModel):
|
|
| 1104 |
|
| 1105 |
class TokenClassificationModel(PreTrainedModel):
|
| 1106 |
"""
|
| 1107 |
-
Custom token classification model with configurable classifier head
|
| 1108 |
"""
|
| 1109 |
|
| 1110 |
def __init__(self, config, base_model=None):
|
|
@@ -1272,46 +553,6 @@ def load_custom_cardioner_multiclass_model(model_path: str, device: str = "auto"
|
|
| 1272 |
return model, tokenizer, model.config
|
| 1273 |
|
| 1274 |
|
| 1275 |
-
def load_custom_multihead_crf_model(model_path: str, device: str = "auto"):
|
| 1276 |
-
import json
|
| 1277 |
-
import os
|
| 1278 |
-
|
| 1279 |
-
from transformers import AutoTokenizer
|
| 1280 |
-
|
| 1281 |
-
required_files = ["config.json", "modeling.py"]
|
| 1282 |
-
missing_files = [
|
| 1283 |
-
f for f in required_files if not os.path.exists(os.path.join(model_path, f))
|
| 1284 |
-
]
|
| 1285 |
-
|
| 1286 |
-
if missing_files:
|
| 1287 |
-
raise FileNotFoundError(
|
| 1288 |
-
f"Missing required files in {model_path}: {missing_files}"
|
| 1289 |
-
)
|
| 1290 |
-
|
| 1291 |
-
print(f"Loading Multi-Head CRF model from: {model_path}")
|
| 1292 |
-
|
| 1293 |
-
tokenizer = AutoTokenizer.from_pretrained(model_path)
|
| 1294 |
-
|
| 1295 |
-
with open(os.path.join(model_path, "config.json"), "r") as f:
|
| 1296 |
-
config_dict = json.load(f)
|
| 1297 |
-
|
| 1298 |
-
config = MultiHeadCRFConfig(**config_dict)
|
| 1299 |
-
|
| 1300 |
-
model = TokenClassificationModelMultiHeadCRF.from_pretrained(
|
| 1301 |
-
model_path, config=config
|
| 1302 |
-
)
|
| 1303 |
-
|
| 1304 |
-
if device == "auto":
|
| 1305 |
-
device = "cuda" if torch.cuda.is_available() else "cpu"
|
| 1306 |
-
|
| 1307 |
-
model = model.to(device)
|
| 1308 |
-
|
| 1309 |
-
print(f"Model loaded successfully on {device}")
|
| 1310 |
-
print(f"Model type: {type(model).__name__}")
|
| 1311 |
-
print(f"Entity types: {model.entity_types}")
|
| 1312 |
-
print(f"Number of labels per head: {model.num_labels}")
|
| 1313 |
-
|
| 1314 |
-
return model, tokenizer, model.config
|
| 1315 |
|
| 1316 |
|
| 1317 |
def validate_custom_multiclass_model_directory(model_path: str) -> dict:
|
|
@@ -1376,9 +617,6 @@ def validate_custom_multiclass_model_directory(model_path: str) -> dict:
|
|
| 1376 |
validation_results["model_info"]["freeze_backbone"] = config.get(
|
| 1377 |
"freeze_backbone", None
|
| 1378 |
)
|
| 1379 |
-
validation_results["model_info"]["use_crf"] = (
|
| 1380 |
-
"TokenClassificationModelCRF" in str(config.get("architectures", []))
|
| 1381 |
-
)
|
| 1382 |
|
| 1383 |
if not config.get("auto_map"):
|
| 1384 |
validation_results["warnings"].append(
|
|
@@ -1397,7 +635,6 @@ def validate_custom_multiclass_model_directory(model_path: str) -> dict:
|
|
| 1397 |
|
| 1398 |
required_classes = [
|
| 1399 |
"TokenClassificationModel",
|
| 1400 |
-
"TokenClassificationModelCRF",
|
| 1401 |
]
|
| 1402 |
missing_classes = [cls for cls in required_classes if cls not in content]
|
| 1403 |
|
|
@@ -1415,12 +652,6 @@ def validate_custom_multiclass_model_directory(model_path: str) -> dict:
|
|
| 1415 |
return validation_results
|
| 1416 |
|
| 1417 |
|
| 1418 |
-
try:
|
| 1419 |
-
from transformers import AutoConfig
|
| 1420 |
-
|
| 1421 |
-
AutoConfig.register("multihead-crf-tagger", MultiHeadCRFConfig)
|
| 1422 |
-
except Exception:
|
| 1423 |
-
pass
|
| 1424 |
|
| 1425 |
|
| 1426 |
def patch_legacy_model(
|
|
@@ -1492,4 +723,4 @@ def patch_multiple_models(
|
|
| 1492 |
f"Successfully {'would patch' if dry_run else 'patched'}: {success}/{len(model_paths)}"
|
| 1493 |
)
|
| 1494 |
|
| 1495 |
-
return results
|
|
|
|
| 3 |
|
| 4 |
import torch
|
| 5 |
import torch.nn as nn
|
|
|
|
| 6 |
from transformers import PretrainedConfig, PreTrainedModel
|
| 7 |
from transformers.modeling_outputs import TokenClassifierOutput
|
| 8 |
|
|
|
|
| 15 |
EuroBertModel = None
|
| 16 |
print("COULD NOT IMPORT EUROBERT MODEL")
|
| 17 |
|
|
|
|
|
|
|
| 18 |
NUM_PER_LAYER = 16
|
| 19 |
|
| 20 |
|
|
|
|
| 61 |
return backbone, backbone_name
|
| 62 |
|
| 63 |
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| 64 |
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| 65 |
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| 66 |
class MultiHeadConfig(PretrainedConfig):
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| 67 |
"""
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| 68 |
+
Configuration class for Multi-Head models.
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| 69 |
"""
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| 70 |
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| 71 |
model_type = "multihead-tagger"
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| 95 |
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| 96 |
class TokenClassificationModelMultiHead(PreTrainedModel):
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| 97 |
"""
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| 98 |
+
Multi-Head model for token classification with multiple entity types.
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| 99 |
"""
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| 100 |
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| 101 |
config_class = MultiHeadConfig
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| 385 |
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| 386 |
class TokenClassificationModel(PreTrainedModel):
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| 387 |
"""
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| 388 |
+
Custom token classification model with configurable classifier head.
|
| 389 |
"""
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| 390 |
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| 391 |
def __init__(self, config, base_model=None):
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| 553 |
return model, tokenizer, model.config
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| 554 |
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| 556 |
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| 557 |
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| 558 |
def validate_custom_multiclass_model_directory(model_path: str) -> dict:
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| 617 |
validation_results["model_info"]["freeze_backbone"] = config.get(
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| 618 |
"freeze_backbone", None
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| 619 |
)
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| 620 |
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| 621 |
if not config.get("auto_map"):
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| 622 |
validation_results["warnings"].append(
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| 635 |
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| 636 |
required_classes = [
|
| 637 |
"TokenClassificationModel",
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| 638 |
]
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| 639 |
missing_classes = [cls for cls in required_classes if cls not in content]
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| 640 |
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| 652 |
return validation_results
|
| 653 |
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| 654 |
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| 655 |
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| 656 |
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| 657 |
def patch_legacy_model(
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| 723 |
f"Successfully {'would patch' if dry_run else 'patched'}: {success}/{len(model_paths)}"
|
| 724 |
)
|
| 725 |
|
| 726 |
+
return results
|