Instructions to use InstaDeepAI/nucleotide-transformer-2.5b-1000g with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use InstaDeepAI/nucleotide-transformer-2.5b-1000g with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="InstaDeepAI/nucleotide-transformer-2.5b-1000g")# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("InstaDeepAI/nucleotide-transformer-2.5b-1000g") model = AutoModelForMaskedLM.from_pretrained("InstaDeepAI/nucleotide-transformer-2.5b-1000g", device_map="auto") - Notebooks
- Google Colab
- Kaggle
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README.md
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@@ -79,7 +79,7 @@ The masking procedure used is the standard one for Bert-style training:
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### Pretraining
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The model was trained with
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### BibTeX entry and citation info
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### Pretraining
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The model was trained with 128 A100 80GB on 300B tokens, with an effective batch size of 1M tokens. The sequence length used was 1000 tokens. The Adam optimizer [38] was used with a learning rate schedule, and standard values for exponential decay rates and epsilon constants, β1 = 0.9, β2 = 0.999 and ε=1e-8. During a first warmup period, the learning rate was increased linearly between 5e-5 and 1e-4 over 16k steps before decreasing following a square root decay until the end of training.
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### BibTeX entry and citation info
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