CeLLaTe 2-Class NER Models
Collection
This collection consolidates NER models trained using a 2-class label schema, predicting CellLine and Cell_Tissue (combined CellType and Tissue) • 9 items • Updated
How to use OTAR3088/CeLLaTe-ner-2class-bioformer8l-tapt-tokenizer-original-v1 with Transformers:
# Use a pipeline as a high-level helper
from transformers import pipeline
pipe = pipeline("token-classification", model="OTAR3088/CeLLaTe-ner-2class-bioformer8l-tapt-tokenizer-original-v1") # Load model directly
from transformers import AutoTokenizer, AutoModelForTokenClassification
tokenizer = AutoTokenizer.from_pretrained("OTAR3088/CeLLaTe-ner-2class-bioformer8l-tapt-tokenizer-original-v1")
model = AutoModelForTokenClassification.from_pretrained("OTAR3088/CeLLaTe-ner-2class-bioformer8l-tapt-tokenizer-original-v1", device_map="auto")This model is a fine-tuned version of Mardiyyah/CeLLaTe-tapt-bioformer-8l-tokenizer-original_v1 on the OTAR3088/CeLLaTe_V3.2_contracted_ent_IOB dataset. It achieves the following results on the evaluation set:
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The following hyperparameters were used during training:
| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
|---|---|---|---|---|---|---|---|
| 0.2869 | 1.0 | 263 | 0.0723 | 0.5740 | 0.6386 | 0.6046 | 0.9738 |
| 0.0531 | 2.0 | 526 | 0.0684 | 0.6867 | 0.6185 | 0.6508 | 0.9766 |
| 0.0344 | 3.0 | 789 | 0.0675 | 0.6442 | 0.6673 | 0.6555 | 0.9757 |
| 0.0264 | 4.0 | 1052 | 0.0650 | 0.7424 | 0.7361 | 0.7393 | 0.9806 |
| 0.0199 | 5.0 | 1315 | 0.0793 | 0.7151 | 0.6579 | 0.6853 | 0.9775 |
| 0.0165 | 6.0 | 1578 | 0.0807 | 0.7749 | 0.6896 | 0.7298 | 0.9796 |
| 0.013 | 7.0 | 1841 | 0.0785 | 0.7040 | 0.7625 | 0.7321 | 0.9792 |