MaleCNS / config.json
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MaleCNS v1.0 connectivity tables, lossless safetensors packaging (CC-BY 4.0)
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{
"model_type": "malecns",
"architectures": [
"MaleCNSConnectome"
],
"auto_map": {
"AutoConfig": "configuration_malecns.MaleCNSConfig",
"AutoModel": "modeling_malecns.MaleCNSConnectome"
},
"num_neurons": 88384522,
"num_edges": 151856684,
"num_nt_rows": 1835518,
"release": "MaleCNS v1.0",
"source_files": {
"connectivity": {
"file": "connectome-weights-male-cns-v1.0-minconf-0.5.feather",
"md5_base64": null
},
"connectivity_traced_only": {
"file": "connectome-weights-male-cns-v1.0-minconf-0.5-traced-only.feather",
"md5_base64": "ZgHUrQr6mf0D6wh5Ze8kIw=="
},
"annotations": {
"file": "body-annotations-male-cns-v1.0-minconf-0.5.feather",
"md5_base64": "UKdxh3DFciDxYLpPQxq4ng=="
},
"neurotransmitters": {
"file": "body-neurotransmitters-male-cns-v1.0.feather",
"md5_base64": "PYQrEv5cSe763lKNfdJKHw=="
}
},
"status_labels": [
"Traced",
"Orphan",
"Glia",
"Unimportant",
"Assign",
"Anchor",
"unannotated"
],
"superclass_labels": [
"ENS",
"ascending_neuron",
"cb_efferent",
"cb_endocrine",
"cb_intrinsic",
"cb_motor",
"cb_sensory",
"cb_sensory_tbc",
"descending_neuron",
"descending_neuron_tbc",
"efferent_ascending",
"efferent_descending",
"ol_intrinsic",
"ol_sensory",
"sensory_ascending",
"sensory_ascending_tbc",
"sensory_descending",
"unannotated",
"visual_centrifugal",
"visual_projection",
"visual_projection_tbc",
"vnc_efferent",
"vnc_endocrine",
"vnc_intrinsic",
"vnc_motor",
"vnc_sensory",
"vnc_sensory_tbc",
"vnc_tbc"
],
"nt_labels": [
"unclear",
"acetylcholine",
"gaba",
"glutamate",
"dopamine",
"histamine",
"serotonin",
"octopamine"
],
"subsets": {
"full_cns": "all",
"central_brain": [
"cb_intrinsic",
"cb_sensory",
"cb_motor",
"cb_endocrine",
"cb_efferent",
"cb_sensory_tbc"
],
"optic_lobes": [
"ol_intrinsic",
"ol_sensory"
],
"vnc": [
"vnc_intrinsic",
"vnc_sensory",
"vnc_motor",
"vnc_efferent",
"vnc_endocrine",
"vnc_tbc",
"vnc_sensory_tbc"
],
"cb_sensory": [
"cb_sensory",
"cb_sensory_tbc"
],
"visual_projection": [
"visual_projection",
"visual_projection_tbc"
],
"visual_centrifugal": [
"visual_centrifugal"
],
"ascending": [
"ascending_neuron",
"sensory_ascending",
"sensory_ascending_tbc",
"efferent_ascending"
],
"descending": [
"descending_neuron",
"descending_neuron_tbc",
"sensory_descending",
"efferent_descending"
]
},
"stats": {
"num_neurons": 88384522,
"num_edges": 151856684,
"num_self_loops": 123,
"synaptic_contacts": 311833243,
"synapse_count_min": 1,
"synapse_count_max": 2591,
"edges_at_min_synapses": {
"1": 151856684,
"2": 57670765,
"3": 23014406,
"5": 7622864,
"10": 2799910
},
"in_degree": {
"mean": 1.7181366212513995,
"max": 13518
},
"out_degree": {
"mean": 1.7181366212513995,
"max": 56517
},
"status_breakdown": {
"unannotated": 88197545,
"Traced": 164789,
"Orphan": 13557,
"Glia": 3292,
"Unimportant": 3056,
"Assign": 1801,
"Anchor": 482
},
"traced_subgraph": {
"neurons": 164789,
"edges": 25563197,
"synaptic_contacts": 124025046
},
"superclass_breakdown": {
"unannotated": 88217946,
"ol_intrinsic": 89401,
"cb_intrinsic": 32164,
"vnc_intrinsic": 13160,
"visual_projection": 9200,
"vnc_sensory": 6361,
"ol_sensory": 6098,
"cb_sensory": 4788,
"ascending_neuron": 1846,
"descending_neuron": 1314,
"vnc_motor": 708,
"visual_centrifugal": 563,
"sensory_ascending": 537,
"cb_motor": 107,
"vnc_efferent": 94,
"cb_endocrine": 72,
"vnc_tbc": 38,
"ENS": 28,
"vnc_sensory_tbc": 28,
"vnc_endocrine": 22,
"cb_sensory_tbc": 13,
"sensory_descending": 12,
"efferent_ascending": 8,
"efferent_descending": 4,
"cb_efferent": 4,
"visual_projection_tbc": 2,
"sensory_ascending_tbc": 2,
"descending_neuron_tbc": 2
},
"subset_sizes": {
"full_cns": 88384522,
"central_brain": 37148,
"optic_lobes": 95499,
"vnc": 20411,
"cb_sensory": 4801,
"visual_projection": 9202,
"visual_centrifugal": 563,
"ascending": 2393,
"descending": 1332
},
"neurotransmitter_rows": 1835518,
"neurotransmitter_breakdown": {
"unclear": 1671117,
"acetylcholine": 104193,
"glutamate": 29443,
"gaba": 22196,
"histamine": 8024,
"dopamine": 396,
"octopamine": 101,
"serotonin": 48
}
}
}