Feature Extraction
Transformers
Safetensors
malecns
connectome
fruit-fly
drosophila
neuroscience
graph
custom_code
Instructions to use QuixiAI/MaleCNS with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use QuixiAI/MaleCNS with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="QuixiAI/MaleCNS", trust_remote_code=True)# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("QuixiAI/MaleCNS", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
| { | |
| "model_type": "malecns", | |
| "architectures": [ | |
| "MaleCNSConnectome" | |
| ], | |
| "auto_map": { | |
| "AutoConfig": "configuration_malecns.MaleCNSConfig", | |
| "AutoModel": "modeling_malecns.MaleCNSConnectome" | |
| }, | |
| "num_neurons": 88384522, | |
| "num_edges": 151856684, | |
| "num_nt_rows": 1835518, | |
| "release": "MaleCNS v1.0", | |
| "source_files": { | |
| "connectivity": { | |
| "file": "connectome-weights-male-cns-v1.0-minconf-0.5.feather", | |
| "md5_base64": null | |
| }, | |
| "connectivity_traced_only": { | |
| "file": "connectome-weights-male-cns-v1.0-minconf-0.5-traced-only.feather", | |
| "md5_base64": "ZgHUrQr6mf0D6wh5Ze8kIw==" | |
| }, | |
| "annotations": { | |
| "file": "body-annotations-male-cns-v1.0-minconf-0.5.feather", | |
| "md5_base64": "UKdxh3DFciDxYLpPQxq4ng==" | |
| }, | |
| "neurotransmitters": { | |
| "file": "body-neurotransmitters-male-cns-v1.0.feather", | |
| "md5_base64": "PYQrEv5cSe763lKNfdJKHw==" | |
| } | |
| }, | |
| "status_labels": [ | |
| "Traced", | |
| "Orphan", | |
| "Glia", | |
| "Unimportant", | |
| "Assign", | |
| "Anchor", | |
| "unannotated" | |
| ], | |
| "superclass_labels": [ | |
| "ENS", | |
| "ascending_neuron", | |
| "cb_efferent", | |
| "cb_endocrine", | |
| "cb_intrinsic", | |
| "cb_motor", | |
| "cb_sensory", | |
| "cb_sensory_tbc", | |
| "descending_neuron", | |
| "descending_neuron_tbc", | |
| "efferent_ascending", | |
| "efferent_descending", | |
| "ol_intrinsic", | |
| "ol_sensory", | |
| "sensory_ascending", | |
| "sensory_ascending_tbc", | |
| "sensory_descending", | |
| "unannotated", | |
| "visual_centrifugal", | |
| "visual_projection", | |
| "visual_projection_tbc", | |
| "vnc_efferent", | |
| "vnc_endocrine", | |
| "vnc_intrinsic", | |
| "vnc_motor", | |
| "vnc_sensory", | |
| "vnc_sensory_tbc", | |
| "vnc_tbc" | |
| ], | |
| "nt_labels": [ | |
| "unclear", | |
| "acetylcholine", | |
| "gaba", | |
| "glutamate", | |
| "dopamine", | |
| "histamine", | |
| "serotonin", | |
| "octopamine" | |
| ], | |
| "subsets": { | |
| "full_cns": "all", | |
| "central_brain": [ | |
| "cb_intrinsic", | |
| "cb_sensory", | |
| "cb_motor", | |
| "cb_endocrine", | |
| "cb_efferent", | |
| "cb_sensory_tbc" | |
| ], | |
| "optic_lobes": [ | |
| "ol_intrinsic", | |
| "ol_sensory" | |
| ], | |
| "vnc": [ | |
| "vnc_intrinsic", | |
| "vnc_sensory", | |
| "vnc_motor", | |
| "vnc_efferent", | |
| "vnc_endocrine", | |
| "vnc_tbc", | |
| "vnc_sensory_tbc" | |
| ], | |
| "cb_sensory": [ | |
| "cb_sensory", | |
| "cb_sensory_tbc" | |
| ], | |
| "visual_projection": [ | |
| "visual_projection", | |
| "visual_projection_tbc" | |
| ], | |
| "visual_centrifugal": [ | |
| "visual_centrifugal" | |
| ], | |
| "ascending": [ | |
| "ascending_neuron", | |
| "sensory_ascending", | |
| "sensory_ascending_tbc", | |
| "efferent_ascending" | |
| ], | |
| "descending": [ | |
| "descending_neuron", | |
| "descending_neuron_tbc", | |
| "sensory_descending", | |
| "efferent_descending" | |
| ] | |
| }, | |
| "stats": { | |
| "num_neurons": 88384522, | |
| "num_edges": 151856684, | |
| "num_self_loops": 123, | |
| "synaptic_contacts": 311833243, | |
| "synapse_count_min": 1, | |
| "synapse_count_max": 2591, | |
| "edges_at_min_synapses": { | |
| "1": 151856684, | |
| "2": 57670765, | |
| "3": 23014406, | |
| "5": 7622864, | |
| "10": 2799910 | |
| }, | |
| "in_degree": { | |
| "mean": 1.7181366212513995, | |
| "max": 13518 | |
| }, | |
| "out_degree": { | |
| "mean": 1.7181366212513995, | |
| "max": 56517 | |
| }, | |
| "status_breakdown": { | |
| "unannotated": 88197545, | |
| "Traced": 164789, | |
| "Orphan": 13557, | |
| "Glia": 3292, | |
| "Unimportant": 3056, | |
| "Assign": 1801, | |
| "Anchor": 482 | |
| }, | |
| "traced_subgraph": { | |
| "neurons": 164789, | |
| "edges": 25563197, | |
| "synaptic_contacts": 124025046 | |
| }, | |
| "superclass_breakdown": { | |
| "unannotated": 88217946, | |
| "ol_intrinsic": 89401, | |
| "cb_intrinsic": 32164, | |
| "vnc_intrinsic": 13160, | |
| "visual_projection": 9200, | |
| "vnc_sensory": 6361, | |
| "ol_sensory": 6098, | |
| "cb_sensory": 4788, | |
| "ascending_neuron": 1846, | |
| "descending_neuron": 1314, | |
| "vnc_motor": 708, | |
| "visual_centrifugal": 563, | |
| "sensory_ascending": 537, | |
| "cb_motor": 107, | |
| "vnc_efferent": 94, | |
| "cb_endocrine": 72, | |
| "vnc_tbc": 38, | |
| "ENS": 28, | |
| "vnc_sensory_tbc": 28, | |
| "vnc_endocrine": 22, | |
| "cb_sensory_tbc": 13, | |
| "sensory_descending": 12, | |
| "efferent_ascending": 8, | |
| "efferent_descending": 4, | |
| "cb_efferent": 4, | |
| "visual_projection_tbc": 2, | |
| "sensory_ascending_tbc": 2, | |
| "descending_neuron_tbc": 2 | |
| }, | |
| "subset_sizes": { | |
| "full_cns": 88384522, | |
| "central_brain": 37148, | |
| "optic_lobes": 95499, | |
| "vnc": 20411, | |
| "cb_sensory": 4801, | |
| "visual_projection": 9202, | |
| "visual_centrifugal": 563, | |
| "ascending": 2393, | |
| "descending": 1332 | |
| }, | |
| "neurotransmitter_rows": 1835518, | |
| "neurotransmitter_breakdown": { | |
| "unclear": 1671117, | |
| "acetylcholine": 104193, | |
| "glutamate": 29443, | |
| "gaba": 22196, | |
| "histamine": 8024, | |
| "dopamine": 396, | |
| "octopamine": 101, | |
| "serotonin": 48 | |
| } | |
| } | |
| } |