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- ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/K/K_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/K/K_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/K/K_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/K/K_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/K/K_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/K/K_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v1_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v2.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v2_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v3.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v3_config.json +16 -0
- ATOMICA_checkpoints/ligand/metal_ions/ZN/ZN_v1.pt +3 -0
- ATOMICA_checkpoints/ligand/metal_ions/ZN/ZN_v1_config.json +16 -0
ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v1.pt
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size 29908010
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ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v1_config.json
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "gelu",
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"pred_dropout": 0.05,
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"pred_hidden_size": 32
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}
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ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v2.pt
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oid sha256:1c4aefaeb9fccad5dda4f0f5d67d7024727cfb2abb34897f9a3caa041c2bcc06
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size 29908010
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ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v2_config.json
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "gelu",
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"pred_dropout": 0.05,
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"pred_hidden_size": 32
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}
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ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v3.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:199e2aeb8fe93818aacef3edc981500882d27035f61670496f3a5808ca6d6c41
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size 29908010
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ATOMICA_checkpoints/ligand/metal_ions/CA/CA_v3_config.json
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "gelu",
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"pred_dropout": 0.05,
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"pred_hidden_size": 32
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}
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ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v1.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:a8bc05c2fbd0c1af5d2361d06b959ad61da155acb50de0e131a1152e8b40a64f
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size 29902698
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ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v1_config.json
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{
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "elu",
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"pred_dropout": 0.05,
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"pred_hidden_size": 16
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}
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ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v2.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:0fd67a6961b369ef231a5562836339701dded1e9c733aa9014291a0e600138aa
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size 29902698
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ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v2_config.json
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "elu",
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"pred_dropout": 0.05,
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"pred_hidden_size": 16
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}
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ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v3.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:d53653666370e12bfc0e51867f0153144fec0ad34b5a8d230ff5e2e3d32f2285
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size 29902698
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ATOMICA_checkpoints/ligand/metal_ions/CO/CO_v3_config.json
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{
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "elu",
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"pred_dropout": 0.05,
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"pred_hidden_size": 16
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}
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ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v1.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:6aba2d9fc9095ab03c1ea375a1a9e4b6152a6f8eaa795e1d1271af1dbd249cd2
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size 29924778
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ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v1_config.json
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{
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "gelu",
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"pred_dropout": 0.0,
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"pred_hidden_size": 64
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}
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ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v2.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:bcd9d92d86a131ed98d81fa1eb4a8821610869fb3f787d04ee2423fea38c29b9
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size 29924778
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ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v2_config.json
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "gelu",
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"pred_dropout": 0.0,
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"pred_hidden_size": 64
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}
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ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v3.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:8a640bf11cd783021738b686b4fd35505f8891a7360277963b41f6b95b487767
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size 29924778
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ATOMICA_checkpoints/ligand/metal_ions/CU/CU_v3_config.json
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{
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"atom_hidden_size": 32,
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"block_hidden_size": 32,
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"edge_size": 32,
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"n_layers": 4,
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"dropout": 0.0,
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"k_neighbors": 8,
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"global_message_passing": true,
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"bottom_global_message_passing": false,
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"fragmentation_method": "PS_300",
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"model_type": "ClassifierModel",
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"num_pred_layers": 3,
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"nonlinearity": "gelu",
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"pred_dropout": 0.0,
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"pred_hidden_size": 64
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}
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ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v1.pt
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:b7c6b46f763303b44d33b2c3834323e01db6291d78e2ddfe0f1580d2d1db8f8a
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v1_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "gelu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v2.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ffb0f96cedb425bed1edb7b0b9e2bc91a2abfbc4550b98eab980499ee2bc1639
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v2_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "gelu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v3.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:671757b89a03803ae50fb5f5251460c6bc7aaecb632ffe0d55523a48302d50f8
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/FE/FE_v3_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "gelu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/K/K_v1.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9031f8d3c1edbdeb97c1d905ba6cf3e796e9a45c6bf50303554357947f694bdd
|
| 3 |
+
size 29924598
|
ATOMICA_checkpoints/ligand/metal_ions/K/K_v1_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/K/K_v2.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b2a3e466444fa0a473d7ab8677f3d528d9dd2beaa1ae0007095b97ef5e0387be
|
| 3 |
+
size 29924598
|
ATOMICA_checkpoints/ligand/metal_ions/K/K_v2_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/K/K_v3.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d96114fb1efeedbd0134ea888a73446691bf584519df6077c01dbb435f59e23d
|
| 3 |
+
size 29924598
|
ATOMICA_checkpoints/ligand/metal_ions/K/K_v3_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v1.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3d2025bbf8f6cb71258f6002ffdb7b421567cdd721ab9ba17efe93ce46cc5169
|
| 3 |
+
size 29942050
|
ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v1_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 6,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 4,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v2.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6b6a0edb5adb718479c96a7cbd3f17cfd36fc350825759aa42100438a40975ca
|
| 3 |
+
size 29942050
|
ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v2_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 6,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 4,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v3.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:81e12e93ac7a0326560be7464b21e0c2ee467c1eb22e4dc62936e15a82c5d7cb
|
| 3 |
+
size 29942050
|
ATOMICA_checkpoints/ligand/metal_ions/MG/MG_v3_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 6,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 4,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v1.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ac58f3c8eb664d44ec139c96aa98f52a895751b3d7596bf7297416ce195f067c
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v1_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "elu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v2.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2602b6f347c4735a256bcdad531558716634d185f818cabc1d4193f60d79b7ce
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v2_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "elu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v3.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:debdd78f12e20d66047f31508fc8d82728d3fd76f14e3241bd92dcfc516c6f6f
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/MN/MN_v3_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "elu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v1.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d24b229db228bbee5eb23c2b6b061bddd349fe7b5a0482f8d99d082b2ab40ac6
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v1_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v2.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2ca24d6b1919c7451af47b4946273e4026c353e12d1289236eb7cd56adb271a0
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v2_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v3.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d4042df07e77e785eed0e7ea8b90e734e1e21b8ab17d5284e833d8e0f02b129c
|
| 3 |
+
size 29924778
|
ATOMICA_checkpoints/ligand/metal_ions/NA/NA_v3_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "relu",
|
| 14 |
+
"pred_dropout": 0.0,
|
| 15 |
+
"pred_hidden_size": 64
|
| 16 |
+
}
|
ATOMICA_checkpoints/ligand/metal_ions/ZN/ZN_v1.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:432404b7d73262c38a1aaf7e87b268036817ef99fea5c7192147a49688b3025d
|
| 3 |
+
size 29902698
|
ATOMICA_checkpoints/ligand/metal_ions/ZN/ZN_v1_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"atom_hidden_size": 32,
|
| 3 |
+
"block_hidden_size": 32,
|
| 4 |
+
"edge_size": 32,
|
| 5 |
+
"n_layers": 4,
|
| 6 |
+
"dropout": 0.0,
|
| 7 |
+
"k_neighbors": 8,
|
| 8 |
+
"global_message_passing": true,
|
| 9 |
+
"bottom_global_message_passing": false,
|
| 10 |
+
"fragmentation_method": "PS_300",
|
| 11 |
+
"model_type": "ClassifierModel",
|
| 12 |
+
"num_pred_layers": 3,
|
| 13 |
+
"nonlinearity": "elu",
|
| 14 |
+
"pred_dropout": 0.05,
|
| 15 |
+
"pred_hidden_size": 16
|
| 16 |
+
}
|