bhumika-tewari-282006 commited on
Commit
d389912
·
verified ·
1 Parent(s): 76ed6f7

Upload training_report.json with huggingface_hub

Browse files
Files changed (1) hide show
  1. training_report.json +820 -0
training_report.json ADDED
@@ -0,0 +1,820 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "trained_at": "2026-08-28T13:42:32.184957+00:00",
3
+ "device": "cpu",
4
+ "n_genes_total": 570,
5
+ "n_train_labeled": 199,
6
+ "n_test_labeled": 102,
7
+ "temporal_split": {
8
+ "train_total": 1504,
9
+ "test_total": 1415,
10
+ "leakage_prevented": 0,
11
+ "no_leak_verified": true
12
+ },
13
+ "baseline": {
14
+ "auroc": 0.1190368014538846,
15
+ "auprc": 0.547004870356739
16
+ },
17
+ "bgcn": {
18
+ "auroc": 0.9213993639254885,
19
+ "auprc": 0.9559666780818283
20
+ },
21
+ "calibration": {
22
+ "slope": 1.039452672944247,
23
+ "intercept": 0.14796603209583445,
24
+ "ece": 0.10702049929429502
25
+ },
26
+ "dca": {
27
+ "passes_gate": true,
28
+ "positive_range": [
29
+ 0.01,
30
+ 0.97
31
+ ]
32
+ },
33
+ "lrp_fidelity": {
34
+ "mean_fidelity": -0.08218878777653914,
35
+ "median_fidelity": -0.013004715115331498,
36
+ "std_fidelity": 0.37249609903622566,
37
+ "min_fidelity": -1.4798435791581208,
38
+ "n_faithful": 4
39
+ },
40
+ "gates": {
41
+ "auroc_beats_baseline": true,
42
+ "auprc_beats_baseline_margin_0.02": true,
43
+ "calibration_slope_in_range": true,
44
+ "calibration_intercept_in_range": false,
45
+ "dca_net_benefit_positive": true,
46
+ "lrp_fidelity_ge_0.3": false
47
+ },
48
+ "release_status": "RESEARCH_ONLY_NOT_PROMOTED",
49
+ "meta": {
50
+ "n_genes": 570,
51
+ "gene_list": [
52
+ "14q partial distal trisomy syndrome",
53
+ "ABCA7",
54
+ "ABCC2",
55
+ "ABHD17B",
56
+ "ABHD3",
57
+ "ACD",
58
+ "ADAMTS1",
59
+ "ADAMTS9",
60
+ "ADAP2",
61
+ "AIMP2",
62
+ "AKAP11",
63
+ "AKT1",
64
+ "ALK",
65
+ "ALS2",
66
+ "ANG",
67
+ "ANKRD22",
68
+ "ANKRD26",
69
+ "AOPEP",
70
+ "APBA2",
71
+ "APC",
72
+ "APOB",
73
+ "APOB3'MAR",
74
+ "APOE",
75
+ "APP",
76
+ "AR",
77
+ "ARID1A",
78
+ "ASXL1",
79
+ "ATM",
80
+ "ATP13A2",
81
+ "ATR",
82
+ "ATRX",
83
+ "AXIN2",
84
+ "BAP1",
85
+ "BARD1",
86
+ "BAX",
87
+ "BCL10",
88
+ "BCL2",
89
+ "BCL6",
90
+ "BIVM-ERCC5",
91
+ "BRAF",
92
+ "BRCA1",
93
+ "BRCA2",
94
+ "BRIP1",
95
+ "BRK1",
96
+ "C10orf55",
97
+ "C6orf201",
98
+ "C9orf72",
99
+ "CARD11",
100
+ "CASP10",
101
+ "CASP8",
102
+ "CASR",
103
+ "CBL",
104
+ "CCND1",
105
+ "CCNF",
106
+ "CDH1",
107
+ "CDK4",
108
+ "CDK6",
109
+ "CDKN2A",
110
+ "CEBPA",
111
+ "CEP290",
112
+ "CFTR",
113
+ "CFTR-AS1",
114
+ "CFTR-AS2",
115
+ "CHCHD10",
116
+ "CHEK2",
117
+ "CHMP2B",
118
+ "CNTN1",
119
+ "COL18A1",
120
+ "COL4A4",
121
+ "CPSF2",
122
+ "CREBBP",
123
+ "CTAGE1",
124
+ "CTNNA1",
125
+ "CTNNB1",
126
+ "CYLD",
127
+ "Cardiovascular phenotype",
128
+ "DAXX",
129
+ "DCTN1",
130
+ "DDX41",
131
+ "DHCR7",
132
+ "DICER1",
133
+ "DIPK1A",
134
+ "DKC1",
135
+ "DMD",
136
+ "DNAJC6",
137
+ "DNAJC7",
138
+ "DNMT3A",
139
+ "EGFR",
140
+ "EGFR-AS1",
141
+ "EGFR-related lung cancer",
142
+ "EGLN1",
143
+ "ELANE",
144
+ "EP300",
145
+ "EPAS1",
146
+ "EPCAM",
147
+ "ERBB2",
148
+ "ERBB4",
149
+ "ERCC2",
150
+ "ERCC4",
151
+ "ESR1",
152
+ "ETV6",
153
+ "EVI2A",
154
+ "EWSR1",
155
+ "EZH2",
156
+ "FAN1",
157
+ "FANCA",
158
+ "FANCC",
159
+ "FANCD2",
160
+ "FANCE",
161
+ "FANCG",
162
+ "FANCI",
163
+ "FAS",
164
+ "FASLG",
165
+ "FBP2",
166
+ "FBXW7",
167
+ "FH",
168
+ "FLCN",
169
+ "FLT1",
170
+ "FLT3",
171
+ "FMR1",
172
+ "FOXA1",
173
+ "FOXL2",
174
+ "FRONTOTEMPORAL LOBAR DEGENERATION WITH TDP43 INCLUSIONS, TARDBP-RELATED",
175
+ "FUS",
176
+ "FXR2",
177
+ "G6PD",
178
+ "GALNT12",
179
+ "GATA2",
180
+ "GATA3",
181
+ "GBA",
182
+ "GBA1",
183
+ "GBE1",
184
+ "GLE1",
185
+ "GLI1",
186
+ "GLIS2",
187
+ "GNA11",
188
+ "GNAQ",
189
+ "GNAS",
190
+ "GPD1",
191
+ "GRN",
192
+ "H3-3B",
193
+ "H3F3A",
194
+ "HBB",
195
+ "HEATR3",
196
+ "HIF1A",
197
+ "HNRNPA2B1",
198
+ "HRAS",
199
+ "HTT",
200
+ "Hereditary nonpolyposis colorectal neoplasms",
201
+ "IDH1",
202
+ "IDH2",
203
+ "IDH3A",
204
+ "INVS",
205
+ "IQCB1",
206
+ "Inborn genetic diseases",
207
+ "Inherited MMR deficiency (Lynch syndrome)",
208
+ "Inherited breast cancer and ovarian cancer",
209
+ "Inherited ovarian cancer (without breast cancer)",
210
+ "JAK1",
211
+ "JAK2",
212
+ "KDM6A",
213
+ "KDR",
214
+ "KIF1A",
215
+ "KIF5A",
216
+ "KIT",
217
+ "KMT2A",
218
+ "KMT2D",
219
+ "KRAS",
220
+ "LALTOP",
221
+ "LDLR",
222
+ "LDLRAP1",
223
+ "LNCR-SMAL",
224
+ "LOC107303340",
225
+ "LOC108281125",
226
+ "LOC108281182",
227
+ "LOC108903148",
228
+ "LOC110806263",
229
+ "LOC110806306",
230
+ "LOC111674477",
231
+ "LOC114803469",
232
+ "LOC126806050",
233
+ "LOC126807526",
234
+ "LOC126861339",
235
+ "LOC126861451",
236
+ "LOC126862483",
237
+ "LOC126862571",
238
+ "LOC129390965",
239
+ "LOC129937550",
240
+ "LOC130007385",
241
+ "LOC130055403",
242
+ "LOC130062441",
243
+ "LOC132090298",
244
+ "LRRFIP2",
245
+ "LRRK2",
246
+ "LZTR1",
247
+ "Li-Fraumeni syndrome 1",
248
+ "MAP2K1",
249
+ "MAP2K2",
250
+ "MAPT",
251
+ "MATR3",
252
+ "MBD4",
253
+ "MDM2",
254
+ "MDM4",
255
+ "MEN1",
256
+ "MET",
257
+ "MIR6084",
258
+ "MLH1",
259
+ "MLH3",
260
+ "MONDO:0000507",
261
+ "MONDO:0002447",
262
+ "MONDO:0003582",
263
+ "MONDO:0004975",
264
+ "MONDO:0004976",
265
+ "MONDO:0005145",
266
+ "MONDO:0005180",
267
+ "MONDO:0005439",
268
+ "MONDO:0005575",
269
+ "MONDO:0005835",
270
+ "MONDO:0007039",
271
+ "MONDO:0007086",
272
+ "MONDO:0007088",
273
+ "MONDO:0007089",
274
+ "MONDO:0007103",
275
+ "MONDO:0007104",
276
+ "MONDO:0007105",
277
+ "MONDO:0007110",
278
+ "MONDO:0007356",
279
+ "MONDO:0007485",
280
+ "MONDO:0007488",
281
+ "MONDO:0007648",
282
+ "MONDO:0007750",
283
+ "MONDO:0007827",
284
+ "MONDO:0008018",
285
+ "MONDO:0008021",
286
+ "MONDO:0008192",
287
+ "MONDO:0008199",
288
+ "MONDO:0008200",
289
+ "MONDO:0008233",
290
+ "MONDO:0008243",
291
+ "MONDO:0008280",
292
+ "MONDO:0008453",
293
+ "MONDO:0008555",
294
+ "MONDO:0008667",
295
+ "MONDO:0008685",
296
+ "MONDO:0008734",
297
+ "MONDO:0008762",
298
+ "MONDO:0008840",
299
+ "MONDO:0008887",
300
+ "MONDO:0009061",
301
+ "MONDO:0009134",
302
+ "MONDO:0009213",
303
+ "MONDO:0009214",
304
+ "MONDO:0009215",
305
+ "MONDO:0009623",
306
+ "MONDO:0009694",
307
+ "MONDO:0009892",
308
+ "MONDO:0009897",
309
+ "MONDO:0010035",
310
+ "MONDO:0010133",
311
+ "MONDO:0010210",
312
+ "MONDO:0010214",
313
+ "MONDO:0010215",
314
+ "MONDO:0010216",
315
+ "MONDO:0010385",
316
+ "MONDO:0010459",
317
+ "MONDO:0010584",
318
+ "MONDO:0010820",
319
+ "MONDO:0010936",
320
+ "MONDO:0010953",
321
+ "MONDO:0010997",
322
+ "MONDO:0011014",
323
+ "MONDO:0011136",
324
+ "MONDO:0011158",
325
+ "MONDO:0011196",
326
+ "MONDO:0011369",
327
+ "MONDO:0011383",
328
+ "MONDO:0011405",
329
+ "MONDO:0011450",
330
+ "MONDO:0011537",
331
+ "MONDO:0011613",
332
+ "MONDO:0011632",
333
+ "MONDO:0011658",
334
+ "MONDO:0011706",
335
+ "MONDO:0011713",
336
+ "MONDO:0011743",
337
+ "MONDO:0011764",
338
+ "MONDO:0011797",
339
+ "MONDO:0011913",
340
+ "MONDO:0011951",
341
+ "MONDO:0012041",
342
+ "MONDO:0012075",
343
+ "MONDO:0012132",
344
+ "MONDO:0012153",
345
+ "MONDO:0012183",
346
+ "MONDO:0012186",
347
+ "MONDO:0012249",
348
+ "MONDO:0012565",
349
+ "MONDO:0012669",
350
+ "MONDO:0012790",
351
+ "MONDO:0012924",
352
+ "MONDO:0012933",
353
+ "MONDO:0012937",
354
+ "MONDO:0013196",
355
+ "MONDO:0013216",
356
+ "MONDO:0013248",
357
+ "MONDO:0013253",
358
+ "MONDO:0013264",
359
+ "MONDO:0013292",
360
+ "MONDO:0013308",
361
+ "MONDO:0013357",
362
+ "MONDO:0013398",
363
+ "MONDO:0013499",
364
+ "MONDO:0013521",
365
+ "MONDO:0013522",
366
+ "MONDO:0013565",
367
+ "MONDO:0013625",
368
+ "MONDO:0013669",
369
+ "MONDO:0013692",
370
+ "MONDO:0013699",
371
+ "MONDO:0013710",
372
+ "MONDO:0013725",
373
+ "MONDO:0013888",
374
+ "MONDO:0014025",
375
+ "MONDO:0014045",
376
+ "MONDO:0014048",
377
+ "MONDO:0014108",
378
+ "MONDO:0014178",
379
+ "MONDO:0014223",
380
+ "MONDO:0014231",
381
+ "MONDO:0014233",
382
+ "MONDO:0014252",
383
+ "MONDO:0014382",
384
+ "MONDO:0014536",
385
+ "MONDO:0014600",
386
+ "MONDO:0014612",
387
+ "MONDO:0014630",
388
+ "MONDO:0014641",
389
+ "MONDO:0014690",
390
+ "MONDO:0014796",
391
+ "MONDO:0014802",
392
+ "MONDO:0014809",
393
+ "MONDO:0014975",
394
+ "MONDO:0014979",
395
+ "MONDO:0014986",
396
+ "MONDO:0014987",
397
+ "MONDO:0015253",
398
+ "MONDO:0015356",
399
+ "MONDO:0015780",
400
+ "MONDO:0016063",
401
+ "MONDO:0016073",
402
+ "MONDO:0016248",
403
+ "MONDO:0016419",
404
+ "MONDO:0017276",
405
+ "MONDO:0017623",
406
+ "MONDO:0018150",
407
+ "MONDO:0018604",
408
+ "MONDO:0018630",
409
+ "MONDO:0018770",
410
+ "MONDO:0018874",
411
+ "MONDO:0018875",
412
+ "MONDO:0018881",
413
+ "MONDO:0018921",
414
+ "MONDO:0018975",
415
+ "MONDO:0018996",
416
+ "MONDO:0019005",
417
+ "MONDO:0021056",
418
+ "MONDO:0024537",
419
+ "MONDO:0024551",
420
+ "MONDO:0030690",
421
+ "MONDO:0030805",
422
+ "MONDO:0030872",
423
+ "MONDO:0031071",
424
+ "MONDO:0032865",
425
+ "MONDO:0033362",
426
+ "MONDO:0042490",
427
+ "MONDO:0044300",
428
+ "MONDO:0054750",
429
+ "MONDO:0100216",
430
+ "MONDO:0100553",
431
+ "MONDO:0700270",
432
+ "MONDO:0800444",
433
+ "MONDO:0859183",
434
+ "MONDO:0859246",
435
+ "MONDO:0859267",
436
+ "MONDO:0957530",
437
+ "MONDO:0975748",
438
+ "MONDO:0980991",
439
+ "MONDO:8000012",
440
+ "MPO",
441
+ "MSH2",
442
+ "MSH3",
443
+ "MSH6",
444
+ "MTOR",
445
+ "MUTYH",
446
+ "MYC",
447
+ "MYD88",
448
+ "NBN",
449
+ "NEFH",
450
+ "NEK1",
451
+ "NF1",
452
+ "NF2",
453
+ "NOTCH1",
454
+ "NOTCH3",
455
+ "NPHP1",
456
+ "NPHP3",
457
+ "NPHP3-ACAD11",
458
+ "NPHP4",
459
+ "NPM1",
460
+ "NRAS",
461
+ "NTHL1",
462
+ "OLR1",
463
+ "OPTN",
464
+ "OSBPL1A",
465
+ "PALB2",
466
+ "PARK7",
467
+ "PARN",
468
+ "PAX8",
469
+ "PBRM1",
470
+ "PCSK9",
471
+ "PDGFRA",
472
+ "PIK3C2G",
473
+ "PIK3CA",
474
+ "PIK3R1",
475
+ "PIKFYVE",
476
+ "PINK1",
477
+ "PMS1",
478
+ "PMS2",
479
+ "POLD1",
480
+ "POLE",
481
+ "POLH",
482
+ "PRKAG2",
483
+ "PRKAR1A",
484
+ "PRKN",
485
+ "PRPH",
486
+ "PSAP",
487
+ "PSEN1",
488
+ "PSEN2",
489
+ "PTCH1",
490
+ "PTEN",
491
+ "PTPN11",
492
+ "PTRH2",
493
+ "Partial 18p monosomy with 18q trisomy",
494
+ "RAB32",
495
+ "RAD51",
496
+ "RAD51C",
497
+ "RAD51D",
498
+ "RAF1",
499
+ "RB1",
500
+ "REL",
501
+ "RET",
502
+ "RHOT1",
503
+ "RPA1",
504
+ "RPS10",
505
+ "RPS17",
506
+ "RPS19",
507
+ "RPS20",
508
+ "RUNX1",
509
+ "SAMD9L",
510
+ "SDHB",
511
+ "SDHD",
512
+ "SEC23B",
513
+ "SETD2",
514
+ "SETX",
515
+ "SH2D1A",
516
+ "SHOC2",
517
+ "SLC52A3",
518
+ "SLX4",
519
+ "SMAD4",
520
+ "SMARCB1",
521
+ "SMN1",
522
+ "SMO",
523
+ "SNCA",
524
+ "SOCS1",
525
+ "SOD1",
526
+ "SORL1",
527
+ "SOS1",
528
+ "SPG11",
529
+ "SPRED1",
530
+ "SQSTM1",
531
+ "STAG2",
532
+ "STAT3",
533
+ "STK11",
534
+ "SUFU",
535
+ "SUPT16H",
536
+ "SYNJ1",
537
+ "See cases",
538
+ "TAF15",
539
+ "TARDBP",
540
+ "TBK1",
541
+ "TERT",
542
+ "TET2",
543
+ "TINF2",
544
+ "TNFAIP3",
545
+ "TP53",
546
+ "TP53BP1",
547
+ "TRPM7",
548
+ "TSC1",
549
+ "TSC2",
550
+ "TTC21B",
551
+ "Triple-negative breast cancer",
552
+ "UBQLN2",
553
+ "USB1",
554
+ "VAPB",
555
+ "VCP",
556
+ "VEGFA",
557
+ "VHL",
558
+ "VPS13C",
559
+ "VPS35",
560
+ "WT1",
561
+ "XIAP",
562
+ "XPA",
563
+ "XRCC1",
564
+ "XRCC2",
565
+ "ZCCHC8",
566
+ "not provided",
567
+ "not specified",
568
+ "tissue:Adipose_Subcutaneous",
569
+ "tissue:Adipose_Visceral_Omentum",
570
+ "tissue:Adrenal_Gland",
571
+ "tissue:Artery_Aorta",
572
+ "tissue:Artery_Coronary",
573
+ "tissue:Artery_Tibial",
574
+ "tissue:Bladder",
575
+ "tissue:Brain_Amygdala",
576
+ "tissue:Brain_Anterior_cingulate_cortex_BA24",
577
+ "tissue:Brain_Caudate_basal_ganglia",
578
+ "tissue:Brain_Cerebellar_Hemisphere",
579
+ "tissue:Brain_Cerebellum",
580
+ "tissue:Brain_Cortex",
581
+ "tissue:Brain_Frontal_Cortex_BA9",
582
+ "tissue:Brain_Hippocampus",
583
+ "tissue:Brain_Hypothalamus",
584
+ "tissue:Brain_Nucleus_accumbens_basal_ganglia",
585
+ "tissue:Brain_Putamen_basal_ganglia",
586
+ "tissue:Brain_Spinal_cord_cervical_c-1",
587
+ "tissue:Brain_Substantia_nigra",
588
+ "tissue:Breast_Mammary_Tissue",
589
+ "tissue:Cells_Cultured_fibroblasts",
590
+ "tissue:Cells_EBV-transformed_lymphocytes",
591
+ "tissue:Cervix_Ectocervix",
592
+ "tissue:Cervix_Endocervix",
593
+ "tissue:Colon_Sigmoid",
594
+ "tissue:Colon_Transverse",
595
+ "tissue:Esophagus_Gastroesophageal_Junction",
596
+ "tissue:Esophagus_Mucosa",
597
+ "tissue:Esophagus_Muscularis",
598
+ "tissue:Fallopian_Tube",
599
+ "tissue:Heart_Atrial_Appendage",
600
+ "tissue:Heart_Left_Ventricle",
601
+ "tissue:Kidney_Cortex",
602
+ "tissue:Kidney_Medulla",
603
+ "tissue:Liver",
604
+ "tissue:Lung",
605
+ "tissue:Minor_Salivary_Gland",
606
+ "tissue:Muscle_Skeletal",
607
+ "tissue:Nerve_Tibial",
608
+ "tissue:Ovary",
609
+ "tissue:Pancreas",
610
+ "tissue:Pituitary",
611
+ "tissue:Prostate",
612
+ "tissue:Skin_Not_Sun_Exposed_Suprapubic",
613
+ "tissue:Skin_Sun_Exposed_Lower_leg",
614
+ "tissue:Small_Intestine_Terminal_Ileum",
615
+ "tissue:Spleen",
616
+ "tissue:Stomach",
617
+ "tissue:Testis",
618
+ "tissue:Thyroid",
619
+ "tissue:Uterus",
620
+ "tissue:Vagina",
621
+ "tissue:Whole_Blood"
622
+ ],
623
+ "n_positive": 226,
624
+ "n_negative": 93,
625
+ "n_unlabeled": 251,
626
+ "seed_genes": [
627
+ "TP53",
628
+ "BRCA1",
629
+ "BRCA2",
630
+ "PTEN",
631
+ "EGFR",
632
+ "KRAS",
633
+ "APC",
634
+ "VHL"
635
+ ],
636
+ "layers": {
637
+ "L1": {
638
+ "nodes": 158,
639
+ "edges": 3833
640
+ },
641
+ "L2": {
642
+ "nodes": 196,
643
+ "edges": 7668
644
+ },
645
+ "L3": {
646
+ "nodes": 412,
647
+ "edges": 342
648
+ },
649
+ "L4": {
650
+ "nodes": 0,
651
+ "edges": 0
652
+ }
653
+ },
654
+ "l4_status": "BLOCKED (CELLxGENE SIGILL in sandbox) \u2014 empty, no fabricated data",
655
+ "sources": [
656
+ "STRING v12.0 (real)",
657
+ "ClinVar esummary (real, dated)",
658
+ "GTEx Portal API v2 (real)",
659
+ "Gene Ontology (real, term-only, not gene-linked)"
660
+ ],
661
+ "panel_genes": [
662
+ "AKT1",
663
+ "ALK",
664
+ "APC",
665
+ "APOE",
666
+ "APP",
667
+ "AR",
668
+ "ARID1A",
669
+ "ASXL1",
670
+ "ATM",
671
+ "ATR",
672
+ "ATRX",
673
+ "AXIN2",
674
+ "BAP1",
675
+ "BARD1",
676
+ "BAX",
677
+ "BCL10",
678
+ "BCL2",
679
+ "BCL6",
680
+ "BRAF",
681
+ "BRCA1",
682
+ "BRCA2",
683
+ "BRIP1",
684
+ "C9orf72",
685
+ "CARD11",
686
+ "CASP8",
687
+ "CASR",
688
+ "CBL",
689
+ "CCND1",
690
+ "CDH1",
691
+ "CDK4",
692
+ "CDK6",
693
+ "CDKN2A",
694
+ "CEBPA",
695
+ "CFTR",
696
+ "CHEK2",
697
+ "CREBBP",
698
+ "CTNNB1",
699
+ "DAXX",
700
+ "DMD",
701
+ "DNMT3A",
702
+ "EGFR",
703
+ "EGLN1",
704
+ "EP300",
705
+ "EPAS1",
706
+ "EPCAM",
707
+ "ERBB2",
708
+ "ERCC2",
709
+ "ESR1",
710
+ "EZH2",
711
+ "FBXW7",
712
+ "FH",
713
+ "FLT1",
714
+ "FLT3",
715
+ "FMR1",
716
+ "FOXA1",
717
+ "FOXL2",
718
+ "FUS",
719
+ "G6PD",
720
+ "GATA3",
721
+ "GBA",
722
+ "GLI1",
723
+ "GNA11",
724
+ "GNAQ",
725
+ "GNAS",
726
+ "GRN",
727
+ "H3F3A",
728
+ "HBB",
729
+ "HIF1A",
730
+ "HRAS",
731
+ "HTT",
732
+ "IDH1",
733
+ "IDH2",
734
+ "IDH3A",
735
+ "JAK1",
736
+ "JAK2",
737
+ "KDM6A",
738
+ "KDR",
739
+ "KIT",
740
+ "KMT2A",
741
+ "KMT2D",
742
+ "KRAS",
743
+ "LDLR",
744
+ "LRRK2",
745
+ "LZTR1",
746
+ "MAP2K1",
747
+ "MAP2K2",
748
+ "MAPT",
749
+ "MDM2",
750
+ "MDM4",
751
+ "MEN1",
752
+ "MET",
753
+ "MLH1",
754
+ "MSH2",
755
+ "MSH3",
756
+ "MSH6",
757
+ "MTOR",
758
+ "MYC",
759
+ "MYD88",
760
+ "NF1",
761
+ "NF2",
762
+ "NOTCH1",
763
+ "NPM1",
764
+ "NRAS",
765
+ "PALB2",
766
+ "PARK7",
767
+ "PAX8",
768
+ "PBRM1",
769
+ "PCSK9",
770
+ "PDGFRA",
771
+ "PIK3CA",
772
+ "PIK3R1",
773
+ "PINK1",
774
+ "PMS2",
775
+ "POLD1",
776
+ "POLE",
777
+ "PRKAR1A",
778
+ "PSEN1",
779
+ "PSEN2",
780
+ "PTCH1",
781
+ "PTEN",
782
+ "PTPN11",
783
+ "RAD51C",
784
+ "RAD51D",
785
+ "RAF1",
786
+ "RB1",
787
+ "RET",
788
+ "RUNX1",
789
+ "SDHB",
790
+ "SDHD",
791
+ "SETD2",
792
+ "SHOC2",
793
+ "SMAD4",
794
+ "SMARCB1",
795
+ "SMN1",
796
+ "SMO",
797
+ "SNCA",
798
+ "SOCS1",
799
+ "SOD1",
800
+ "SOS1",
801
+ "SPRED1",
802
+ "STAG2",
803
+ "STAT3",
804
+ "STK11",
805
+ "SUFU",
806
+ "TARDBP",
807
+ "TERT",
808
+ "TET2",
809
+ "TNFAIP3",
810
+ "TP53",
811
+ "TP53BP1",
812
+ "TSC1",
813
+ "TSC2",
814
+ "VEGFA",
815
+ "VHL",
816
+ "WT1",
817
+ "XRCC1"
818
+ ]
819
+ }
820
+ }