Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer", device_map="auto") - Inference
- Notebooks
- Google Colab
- Kaggle
Download docs/source/api.rst from ctheodoris/Geneformer: direct link, hf CLI and curl.
- Browser
- Download file 597 Bytes
-
https://huggingface.co/ctheodoris/Geneformer/resolve/3a6866963d20ff5ce7c82d2c4544cb2b304017e9/docs/source/api.rst
- Command line
-
hf download hf://ctheodoris/Geneformer@3a6866963d20ff5ce7c82d2c4544cb2b304017e9/docs/source/api.rst
-
curl -L -o api.rst https://huggingface.co/ctheodoris/Geneformer/resolve/3a6866963d20ff5ce7c82d2c4544cb2b304017e9/docs/source/api.rst
597 Bytes
| API | |
| === | |
| Tokenizer | |
| --------- | |
| .. toctree:: | |
| :maxdepth: 1 | |
| geneformer.tokenizer | |
| Classifier | |
| ---------- | |
| .. toctree:: | |
| :maxdepth: 1 | |
| geneformer.classifier | |
| Multitask Classifier | |
| -------------------- | |
| .. toctree:: | |
| :maxdepth: 1 | |
| geneformer.mtl_classifier | |
| Embedding Extractor | |
| ------------------- | |
| .. toctree:: | |
| :maxdepth: 1 | |
| geneformer.emb_extractor | |
| In Silico Perturber | |
| ------------------- | |
| .. toctree:: | |
| :maxdepth: 1 | |
| geneformer.in_silico_perturber | |
| In Silico Perturber Stats | |
| ------------------------- | |
| .. toctree:: | |
| :maxdepth: 1 | |
| geneformer.in_silico_perturber_stats | |