How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")
# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer", device_map="auto")
https://huggingface.co/ctheodoris/Geneformer/resolve/870b99b1eba6c4fb4b619cd873edfda975ac978e/examples/gene_classification.ipynb
hf download hf://ctheodoris/Geneformer@870b99b1eba6c4fb4b619cd873edfda975ac978e/examples/gene_classification.ipynb
curl -L -o gene_classification.ipynb https://huggingface.co/ctheodoris/Geneformer/resolve/870b99b1eba6c4fb4b619cd873edfda975ac978e/examples/gene_classification.ipynb
