Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer", device_map="auto") - Inference
- Notebooks
- Google Colab
- Kaggle
| # See https://pre-commit.com for more information | |
| # See https://pre-commit.com/hooks.html for more hooks | |
| repos: | |
| - repo: https://github.com/pre-commit/pre-commit-hooks | |
| rev: v3.2.0 | |
| hooks: | |
| - id: trailing-whitespace | |
| - id: end-of-file-fixer | |
| - id: check-yaml | |
| - id: check-added-large-files | |
| - id: check-merge-conflict | |
| - id: mixed-line-ending | |
| - id: check-docstring-first | |
| - repo: https://github.com/pycqa/isort | |
| rev: 5.12.0 | |
| hooks: | |
| - id: isort | |
| args: ["--profile", "black"] | |
| - repo: https://github.com/astral-sh/ruff-pre-commit | |
| # Ruff version. | |
| rev: v0.1.4 | |
| hooks: | |
| # Run the Ruff linter. | |
| - id: ruff | |
| # Run the Ruff formatter. | |
| - id: ruff-format | |