Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer", device_map="auto") - Inference
- Notebooks
- Google Colab
- Kaggle
Download examples/cell_classification.ipynb from ctheodoris/Geneformer: direct link, hf CLI and curl.
- Browser
- Download file 106 kB
-
https://huggingface.co/ctheodoris/Geneformer/resolve/main/examples/cell_classification.ipynb
- Command line
-
hf download hf://ctheodoris/Geneformer/examples/cell_classification.ipynb
-
curl -L -o cell_classification.ipynb https://huggingface.co/ctheodoris/Geneformer/resolve/main/examples/cell_classification.ipynb
106 kB