Update README.md

README.md

@@ -79,7 +79,7 @@ For usage, see [examples](https://huggingface.co/ctheodoris/Geneformer/tree/main
 - extracting and plotting cell embeddings
 - in silico perturbation
 
-Please also see [here](https://tinyurl.com/geneformertutorial) for a quickstart tutorial for predicting candidate therapeutic targets with Geneformer.
+Please also see [our protocol paper](http://rdcu.be/ffApo) and [tutorial](https://tinyurl.com/geneformertutorial) for predicting candidate therapeutic targets with Geneformer.
 
 Complete documentation is available at https://geneformer.readthedocs.io/en/latest/.
 
@@ -89,4 +89,5 @@ Please note that GPU resources are required for efficient usage of Geneformer. A
 
 # Citations
 - C V Theodoris#, L Xiao, A Chopra, M D Chaffin, Z R Al Sayed, M C Hill, H Mantineo, E Brydon, Z Zeng, X S Liu, P T Ellinor#. Transfer learning enables predictions in network biology. _**Nature**_, 31 May 2023. (#co-corresponding authors)
-- H Chen*, M S Venkatesh*, J Gomez Ortega, S V Mahesh, T Nandi, R Madduri, K Pelka†, C V Theodoris†#. Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology. _**Nature Computational Science**_, 27 Mar 2026. (*co-first authors, †co-senior authors, #corresponding author)
+- H Chen*, M S Venkatesh*, J Gomez Ortega, S V Mahesh, T Nandi, R Madduri, K Pelka†, C V Theodoris†#. Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology. _**Nature Computational Science**_, 27 Mar 2026. (*co-first authors, †co-senior authors, #corresponding author)
+- Y Zhang, M S Venkatesh, and C V Theodoris. Discovery of candidate therapeutic targets with Geneformer. _**Nature Protocols**_, 23 Apr 2026.