Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer", device_map="auto") - Inference
- Notebooks
- Google Colab
- Kaggle
Commit History
move dicts to init ea428cb
update kwargs for pretrainer fb130e6
Christina Theodoris commited on
fix: incorrect condition control flow (#261) 1366905
Update pretrainer for transformers==4.28.0 b925dcc
Christina Theodoris commited on
add in silico perturbation module efec1c4
Christina Theodoris commited on
Add data collator for cell classification and example for cell classification 088ea6e
Christina Theodoris commited on