metadata
license: other
license_name: venusrem2-academic
pretty_name: VenusREM2
VenusREM2 data
Private archives for rem2 download. Layout is rem2 --base_dir
(aa_seq/, substitutions/, pdbs/, aa_seq_aln_a2m_af2cf/).
ProteinGym default MSA is the paper ColabFold set (aa_seq_aln_a2m_af2cf.tar.gz).
Assay lists match the Overleaf evaluation set: 1,211 assays.
| Folder | Assays | Unique WT | Notes |
|---|---|---|---|
ProteinGym/ |
217 | 187 (186 UniProt) | Official substitution DMS. 217 files per folder, same IDs as the paper panel. |
VenusMutHub/ |
905 | 527 | Same 905 assays as the paper macro-average. Duplicate-WT PDBs are assay-named copies or symlinks. |
VenusViroHub/ |
89 | 52 | Paper set after dropping SARS2_XBB15_RBD_Taylor. 616,690 evaluated substitutions (XnX kept in CSVs, excluded from metrics). Zero assay overlap with ProteinGym. |
VenusViroHub phenotype counts (paper Table): immune escape 21 / 148,468; cell entry 18 / 189,048; binding 17 / 90,245; expression 15 / 58,120; fitness 15 / 114,287; stability 2 / 11,187; activity 1 / 5,335.
Academic / non-profit use is free. Commercial or fee-for-service use requires a license: contact tanyang.august@sjtu.edu.
Do not git clone this repo. Download the .tar.gz files and extract.