Create baseline_heuristic.py
Browse files- baseline_heuristic.py +112 -0
baseline_heuristic.py
ADDED
|
@@ -0,0 +1,112 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import csv
|
| 2 |
+
import json
|
| 3 |
+
import sys
|
| 4 |
+
from typing import Dict, List
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
DEFAULT_INPUT_PATH = "data/tester.csv"
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
def _safe_float(value, default: float = 0.0) -> float:
|
| 11 |
+
try:
|
| 12 |
+
return float(value)
|
| 13 |
+
except (TypeError, ValueError):
|
| 14 |
+
return default
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
def _read_csv(path: str) -> List[Dict[str, str]]:
|
| 18 |
+
with open(path, "r", encoding="utf-8") as f:
|
| 19 |
+
return list(csv.DictReader(f))
|
| 20 |
+
|
| 21 |
+
|
| 22 |
+
def _detect_id_column(fieldnames: List[str]) -> str:
|
| 23 |
+
preferred = ["id", "row_id", "sample_id", "case_id", "record_id"]
|
| 24 |
+
for col in preferred:
|
| 25 |
+
if col in fieldnames:
|
| 26 |
+
return col
|
| 27 |
+
return ""
|
| 28 |
+
|
| 29 |
+
|
| 30 |
+
def heuristic_score(row: Dict[str, str]) -> float:
|
| 31 |
+
intervention_intensity = _safe_float(row.get("intervention_intensity"))
|
| 32 |
+
physiologic_instability_index = _safe_float(row.get("physiologic_instability_index"))
|
| 33 |
+
recovery_signal_strength = _safe_float(row.get("recovery_signal_strength"))
|
| 34 |
+
overshoot_risk_score = _safe_float(row.get("overshoot_risk_score"))
|
| 35 |
+
drift_gradient = _safe_float(row.get("drift_gradient"))
|
| 36 |
+
stop_point_margin = _safe_float(row.get("stop_point_margin"))
|
| 37 |
+
intervention_taper_alignment = _safe_float(row.get("intervention_taper_alignment"))
|
| 38 |
+
coordination_stability_score = _safe_float(row.get("coordination_stability_score"))
|
| 39 |
+
|
| 40 |
+
score = 0.0
|
| 41 |
+
score += intervention_intensity * 1.0
|
| 42 |
+
score += physiologic_instability_index * 1.2
|
| 43 |
+
score += overshoot_risk_score * 1.5
|
| 44 |
+
score += max(0.0, drift_gradient) * 1.4
|
| 45 |
+
score += max(0.0, 0.20 - stop_point_margin) * 2.0
|
| 46 |
+
score -= recovery_signal_strength * 1.0
|
| 47 |
+
score -= intervention_taper_alignment * 0.9
|
| 48 |
+
score -= coordination_stability_score * 0.8
|
| 49 |
+
|
| 50 |
+
if score < 0.0:
|
| 51 |
+
return 0.0
|
| 52 |
+
if score > 1.0:
|
| 53 |
+
return 1.0
|
| 54 |
+
return round(score, 6)
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def generate_predictions(
|
| 58 |
+
input_path: str = DEFAULT_INPUT_PATH,
|
| 59 |
+
output_path: str = "predictions.csv",
|
| 60 |
+
threshold: float = 0.5,
|
| 61 |
+
) -> Dict[str, object]:
|
| 62 |
+
rows = _read_csv(input_path)
|
| 63 |
+
if not rows:
|
| 64 |
+
raise ValueError("Input file is empty.")
|
| 65 |
+
|
| 66 |
+
fieldnames = list(rows[0].keys())
|
| 67 |
+
id_col = _detect_id_column(fieldnames)
|
| 68 |
+
|
| 69 |
+
output_rows = []
|
| 70 |
+
positive_predictions = 0
|
| 71 |
+
|
| 72 |
+
for idx, row in enumerate(rows):
|
| 73 |
+
row_id = row[id_col] if id_col else str(idx)
|
| 74 |
+
pred_score = heuristic_score(row)
|
| 75 |
+
pred_label = 1 if pred_score >= threshold else 0
|
| 76 |
+
positive_predictions += pred_label
|
| 77 |
+
|
| 78 |
+
output_rows.append(
|
| 79 |
+
{
|
| 80 |
+
"id": row_id,
|
| 81 |
+
"prediction_score": pred_score,
|
| 82 |
+
"prediction": pred_label,
|
| 83 |
+
}
|
| 84 |
+
)
|
| 85 |
+
|
| 86 |
+
with open(output_path, "w", encoding="utf-8", newline="") as f:
|
| 87 |
+
writer = csv.DictWriter(f, fieldnames=["id", "prediction_score", "prediction"])
|
| 88 |
+
writer.writeheader()
|
| 89 |
+
writer.writerows(output_rows)
|
| 90 |
+
|
| 91 |
+
return {
|
| 92 |
+
"input_path": input_path,
|
| 93 |
+
"output_path": output_path,
|
| 94 |
+
"rows_processed": len(rows),
|
| 95 |
+
"threshold_used": threshold,
|
| 96 |
+
"predicted_positive_support": positive_predictions,
|
| 97 |
+
"predicted_negative_support": len(rows) - positive_predictions,
|
| 98 |
+
"note": "This is a dataset-specific baseline heuristic, not the canonical evaluation scorer.",
|
| 99 |
+
}
|
| 100 |
+
|
| 101 |
+
|
| 102 |
+
if __name__ == "__main__":
|
| 103 |
+
input_path = sys.argv[1] if len(sys.argv) > 1 else DEFAULT_INPUT_PATH
|
| 104 |
+
output_path = sys.argv[2] if len(sys.argv) > 2 else "predictions.csv"
|
| 105 |
+
threshold = float(sys.argv[3]) if len(sys.argv) > 3 else 0.5
|
| 106 |
+
|
| 107 |
+
result = generate_predictions(
|
| 108 |
+
input_path=input_path,
|
| 109 |
+
output_path=output_path,
|
| 110 |
+
threshold=threshold,
|
| 111 |
+
)
|
| 112 |
+
print(json.dumps(result, indent=2))
|