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  license: mit
 
 
 
 
 
 
 
 
 
 
 
 
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+ language: en
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  license: mit
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+ task_categories:
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+ - tabular-classification
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+ tags:
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+ - long-covid
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+ - multi-omics
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+ - recovery
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+ - systems-biology
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+ - sios
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+ - interaction-geometry
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+ size_categories:
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+ - n<1K
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+ pretty_name: Long Covid Recovery Interaction Geometry
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  ---
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+
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+ # What this dataset does
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+
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+ This dataset tests whether failed Long Covid recovery is better predicted by interaction geometry than by any single biological burden signal.
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+
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+ The target is not disease diagnosis.
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+
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+ The target is failed recovery.
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+
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+ # Core stability idea
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+
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+ A patient may show high biological burden and still recover if repair capacity remains strong and omics layers stay coherent.
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+
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+ A patient may show moderate burden and fail to recover if repair capacity weakens and biological layers begin to diverge.
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+
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+ The central hypothesis is:
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+
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+ ```text
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+ failed recovery = burden × disagreement × weak repair
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+
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+ Prediction target
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+ label = 1
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+
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+ means failed or stuck recovery trajectory.
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+
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+ label = 0
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+
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+ means recovered or stable recovery trajectory.
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+
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+ Row structure
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+
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+ Each row represents a synthetic patient recovery state.
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+
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+ Columns:
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+
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+ scenario_id
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+ ifn_signature
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+ cytokine_activation
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+ acute_phase_proteins
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+ mitochondrial_stress
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+ lipid_disruption
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+ microbiome_instability
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+ oxidative_stress
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+ repair_response
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+ symptom_score
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+ label
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+ Biological interpretation
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+
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+ The dataset is biology-shaped but synthetic.
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+
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+ It is designed to test whether models can detect interaction structure across immune, metabolic, microbiome, oxidative, and repair signals.
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+
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+ It does not claim patient-level validation.
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+
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+ Files
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+ data/train.csv
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+ data/test.csv
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+ scorer.py
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+ README.md
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+ Evaluation
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+
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+ Submit predictions as:
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+
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+ scenario_id,prediction
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+ LC101,0
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+ LC102,0
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+ LC103,1
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+
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+ Run:
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+
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+ python scorer.py predictions.csv data/test.csv
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+
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+ The scorer reports:
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+
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+ accuracy
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+ precision
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+ recall
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+ f1
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+ confusion matrix
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+ Structural Note
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+
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+ This dataset is part of the Clarus / SIOS synthetic benchmark series.
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+
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+ It is designed to test whether models can identify latent stability geometry rather than rely on single-variable correlation.
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+ The hidden structure is not intended to represent a clinical rule.
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+ The purpose is to evaluate whether a model can reason across interacting biological signals.
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+ Production Deployment
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+
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+ This dataset should not be used for clinical decision-making.
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+ A production version would require validated patient-level Long Covid multi-omics data, longitudinal outcomes, and independent external testing.
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+ Enterprise & Research Collaboration
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+ This benchmark can be extended into real-data research using public or partner datasets containing transcriptomics, proteomics, metabolomics, immune profiling, symptom trajectories, and recovery outcomes.
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+ License
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+
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+ MIT