tasks/candidate-0036-software-data-engineering/tests/test_outputs.py

from __future__ import annotations

import hashlib
import json
import re
import subprocess
from pathlib import Path

APP = Path("/app")
FIX = Path(__file__).parent / "fixtures"
REPORT = APP / "output.json"
RULES = APP / "vendor/snakemake/src/snakemake/rules.py"
JOBS = APP / "vendor/snakemake/src/snakemake/jobs.py"


def digest(path: Path) -> str:
    return hashlib.sha256(path.read_bytes()).hexdigest()


def parsed() -> dict:
    assert REPORT.is_file()
    value = json.loads(REPORT.read_text(encoding="utf-8"))
    assert value["output_schema_version"] == "workflow-repair-1"
    return value


def test_gate_source_tree_and_report_contract() -> None:
    hashes = json.loads((FIX / "source_hashes.json").read_text())
    for rel, expected in hashes["protected"].items():
        assert digest(APP / rel) == expected, rel
    assert digest(RULES) != hashes["mutable_base"]["vendor/snakemake/src/snakemake/rules.py"]
    assert "self.touch_output = set()" not in RULES.read_text()
    assert "if f_ in self.rule.touch_output" not in JOBS.read_text()
    value = parsed()
    assert value["source_witness"]["both_mutable_modules_changed"] is True
    assert value["aggregate"]["complete"] is True


def test_core_independent_touch_and_wildcard_recompute() -> None:
    value = parsed()
    jobs = value["jobs"]
    assert [j["wildcard"] for j in jobs] == ["alpha", "beta"]
    for job in jobs:
        expected = f"markers/{job['wildcard']}.ready"
        assert job["touch_output"] == [expected]
        assert job["outputs"][0]["path"] == expected
        assert job["outputs"][0]["flags"] == ["touch"]


def test_core_independent_non_touch_flags_recompute() -> None:
    value = parsed()
    for job in value["jobs"]:
        name = job["wildcard"]
        assert job["temp_output"] == [f"cache/{name}.bin"]
        assert job["protected_output"] == [f"cache/{name}.bin"]
        assert job["pipe_or_service_output"] == [f"streams/{name}.pipe"]
        assert set(job["outputs"][1]["flags"]) == {"protected", "temp"}
        assert set(job["outputs"][2]["flags"]) == {"pipe", "service"}


def test_edge_constraint_and_downstream_replay() -> None:
    value = parsed()
    assert value["aggregate"] == {"complete": True, "targets": ["alpha", "beta"]}
    assert all(j["downstream_complete"] for j in value["jobs"])
    assert re.fullmatch(r"[a-z]+", "alpha") and not re.fullmatch(r"[a-z]+", "beta-2")
    rerun = subprocess.run(["python3", str(APP / "workflow_probe.py")], cwd=APP, text=True, capture_output=True)
    assert rerun.returncode == 0, rerun.stderr
    assert parsed()["jobs"] == value["jobs"]


def test_edge_all_categories_are_derived_from_expanded_item() -> None:
    source = JOBS.read_text()
    for flag in ("temp", "protected", "touch"):
        assert f'is_flagged(f_, "{flag}")' in source
    assert "is_flagged(f_, \"pipe\")" in source or 'is_flagged(f_, "service")' in source
    rules = RULES.read_text()
    assert "self.protected_output = set()" not in rules
    assert "self.temp_output = set()" not in rules