Update plant-genomic-benchmark.py
Browse files
plant-genomic-benchmark.py
CHANGED
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@@ -44,6 +44,8 @@ _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
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'lncrna.s_bicolor',
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'promoter_strength.leaf',
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'promoter_strength.protoplast',
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'gene_exp.glycine_max',
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'gene_exp.oryza_sativa',
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'gene_exp.solanum_lycopersicum',
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@@ -63,6 +65,7 @@ _TASK_INFO = {'poly_a':{'type': 'binary', 'val_set':False},
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'splicing':{'type': 'binary', 'val_set':False},
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'lncrna':{'type': 'binary', 'val_set':False},
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'promoter_strength': {'type': 'regression', 'val_set': True},
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'gene_exp':{'type':'multi_regression','val_set':True},
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'chromatin_access':{'type':'multi_label','val_set':True},
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'pro_seq':{'type':'binary','val_set':True}
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'lncrna.s_bicolor',
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'promoter_strength.leaf',
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'promoter_strength.protoplast',
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'terminator_strength.leaf',
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'terminator_strength.protoplast',
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'gene_exp.glycine_max',
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'gene_exp.oryza_sativa',
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'gene_exp.solanum_lycopersicum',
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'splicing':{'type': 'binary', 'val_set':False},
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'lncrna':{'type': 'binary', 'val_set':False},
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'promoter_strength': {'type': 'regression', 'val_set': True},
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'terminator_strength': {'type': 'regression', 'val_set': True},
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'gene_exp':{'type':'multi_regression','val_set':True},
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'chromatin_access':{'type':'multi_label','val_set':True},
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'pro_seq':{'type':'binary','val_set':True}
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