#!/usr/bin/env python3 """Generate a self-contained SForge task JSON with deterministic embedded source payloads.""" from __future__ import annotations import base64 import io import json from pathlib import Path import tarfile ROOT = Path(__file__).resolve().parents[1] REPO = ROOT / "task_repo" OUTPUT = ROOT / "sforge" / "mitbih_interpatient_arrhythmia.json" def payload(exclude_judge: bool) -> str: buffer = io.BytesIO() with tarfile.open(fileobj=buffer, mode="w:gz", format=tarfile.PAX_FORMAT) as archive: for path in sorted(REPO.rglob("*")): relative = path.relative_to(REPO) if any(part in {"__pycache__", ".pytest_cache"} for part in relative.parts): continue if exclude_judge and relative.parts and relative.parts[0] == "judge": continue if path.is_file(): info = archive.gettarinfo(str(path), arcname=str(relative)) info.uid = info.gid = 0 info.uname = info.gname = "root" info.mtime = 0 with path.open("rb") as handle: archive.addfile(info, handle) return base64.b64encode(buffer.getvalue()).decode("ascii") def unpack_command(encoded: str) -> str: return ( "mkdir -p /home/workspace/mitbih_ecg && " "python -c \"import base64;open('/tmp/task.tgz','wb').write(base64.b64decode('" + encoded + "'))\" && tar -xzf /tmp/task.tgz -C /home/workspace/mitbih_ecg && rm /tmp/task.tgz" ) def main() -> int: work_payload = payload(exclude_judge=True) judge_payload = payload(exclude_judge=False) prompt = ( "You are a senior biomedical signal-processing researcher. Read README.md and improve solution.py " "to maximize patient-independent arrhythmia classification performance on the hidden DS2 records. " "Use record-level validation, respect the CLI and runtime constraints, and do not use medical claims. " "Run the self-test and call sforge-submit whenever you have a meaningful improvement." ) task = { "task_id": "mitbih_interpatient_arrhythmia", "name": "MIT-BIH Cross-Patient Arrhythmia Classification", "base_image": "python", "platform": "linux/amd64", "cwd": "/home/workspace/mitbih_ecg", "submit_paths": ["solution.py", "src/"], "submit_exclude": ["judge/", "scripts/", "data/", "__pycache__/", ".git/"], "internet": False, "game_mode": False, "work": { "setup_cmds": [ unpack_command(work_payload), "cd /home/workspace/mitbih_ecg && pip install --no-cache-dir -r requirements.txt", "mkdir -p /data/public && cd /home/workspace/mitbih_ecg && python scripts/prepare_data.py --split train --out /data/public", "chmod -R a+rX /data/public /home/workspace/mitbih_ecg && rm -rf /home/workspace/mitbih_ecg/scripts", "cd /home/workspace/mitbih_ecg && git init && git config user.email 'sforge@local' && git config user.name 'sforge' && git add -A && git commit -m init" ], "specs_dir": "/home/workspace/mitbih_ecg", "agent_query": prompt, "cpu_limit": 8, "mem_limit": "16g" }, "judge": { "setup_cmds": [ unpack_command(judge_payload), "cd /home/workspace/mitbih_ecg && pip install --no-cache-dir -r requirements.txt", "mkdir -p /data/public /opt/judge /opt/judge_private && cd /home/workspace/mitbih_ecg && python scripts/prepare_data.py --split both --out /tmp/all_data", "mv /tmp/all_data/train.npz /tmp/all_data/test_features.npz /data/public/ && mv /tmp/all_data/test_labels.npz /tmp/all_data/provenance.json /opt/judge_private/", "mv /home/workspace/mitbih_ecg/judge/evaluate.py /opt/judge/evaluate.py && rm -rf /home/workspace/mitbih_ecg/judge /home/workspace/mitbih_ecg/scripts", "chmod -R a+rX /data/public /home/workspace/mitbih_ecg && chmod 700 /opt/judge /opt/judge/evaluate.py /opt/judge_private && chmod 600 /opt/judge_private/*" ], "eval_cmd": "python /opt/judge/evaluate.py --submission /home/workspace/mitbih_ecg --train /data/public/train.npz --test /data/public/test_features.npz --labels /opt/judge_private/test_labels.npz --timeout 600", "eval_timeout": 660, "parser": "structured_json", "score_direction": "maximize", "selection": "valid_then_score", "cpu_limit": 8, "mem_limit": "16g" } } OUTPUT.parent.mkdir(parents=True, exist_ok=True) OUTPUT.write_text(json.dumps(task, indent=2) + "\n", encoding="utf-8") print(OUTPUT) return 0 if __name__ == "__main__": raise SystemExit(main())