File size: 839 Bytes
16897d4 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | {
"dataset": "Internal_Zhang2023_252502",
"source_file": "Zhang2023_Int.xlsx",
"n_peptides": 252502,
"peptide_len": 28,
"tokens_per_row": 30,
"model": "facebook/esm2_t6_8M_UR50D",
"subdir": "ESM2_8M",
"n_layers": 6,
"dim": 320,
"layers": [
"L0",
"L1",
"L2",
"L3",
"L4",
"L5",
"L6",
"L6_pre"
],
"dtype": "float16",
"compressed": false,
"shard_rows": 252502,
"masking": "none (raw forward)",
"labels": [
"control_psi",
"mln4924_delta_psi",
"svm_predicted_psi",
"degron_index"
],
"labels_included": false,
"token_layout": "axis1 length 30: index0=<cls>(BOS), index1..28=residue 1..28, index29=<eos>",
"filters": [
"drop C-terminal (sequence ends with '*')",
"N-terminal tiles (tile_idx == 1) KEPT"
],
"tiling": "28-mer, step 23 (overlap 5)"
} |