| { |
| "dataset": "Internal_Zhang2023_252502", |
| "source_file": "Zhang2023_Int.xlsx", |
| "n_peptides": 252502, |
| "peptide_len": 28, |
| "tokens_per_row": 30, |
| "model": "facebook/esm2_t6_8M_UR50D", |
| "subdir": "ESM2_8M", |
| "n_layers": 6, |
| "dim": 320, |
| "layers": [ |
| "L0", |
| "L1", |
| "L2", |
| "L3", |
| "L4", |
| "L5", |
| "L6", |
| "L6_pre" |
| ], |
| "dtype": "float16", |
| "compressed": false, |
| "shard_rows": 252502, |
| "masking": "none (raw forward)", |
| "labels": [ |
| "control_psi", |
| "mln4924_delta_psi", |
| "svm_predicted_psi", |
| "degron_index" |
| ], |
| "labels_included": false, |
| "token_layout": "axis1 length 30: index0=<cls>(BOS), index1..28=residue 1..28, index29=<eos>", |
| "filters": [ |
| "drop C-terminal (sequence ends with '*')", |
| "N-terminal tiles (tile_idx == 1) KEPT" |
| ], |
| "tiling": "28-mer, step 23 (overlap 5)" |
| } |
