README_CELL2.md

---
language: [en]
license: cc-by-4.0
task_categories: [text-generation,token-classification,question-answering]
tags: [biology,kluyveromyces-marxianus,yeast,pathways,interactions,structures]
size_categories: ["10K<n<100K"]
---

# 🧬 Kluyveromyces marxianus Cell 2 Dataset v10.0.0

## Overview

**CELL 2** expansion for *Kluyveromyces marxianus* - pathways, interactions, structures, repository.

### Statistics

| Metric | Value |
|--------|-------|
| **Total Collected** | 1,091 |
| **Total Local Saved** | 1,091 |
| **Version** | v10.0.0 |
| **Date** | 2025-11-11 |

### Data Categories

- **KEGG Pathways**: 591 records (local: 591)
- **UniProt Repository**: 500 records (local: 500)

### Cell 0 Integration

```
km_dataset/
├── pathway/          # KEGG pathways
├── interaction/      # STRING interactions
├── structure/        # PDB structures
├── repository/       # UniProt entries
└── checkpoints/cell2_quantum/
```

### HuggingFace (Cell 2)

- `cell2_pathways` - KEGG pathways
- `cell2_interactions` - STRING interactions
- `cell2_structures` - PDB structures
- `cell2_repository` - UniProt entries
- `cell2_splits` - Train/val/test splits

## Usage

### Load All Cell 2
```python
from datasets import load_dataset, concatenate_datasets

all_data = []
for phase in ['cell2_pathways', 'cell2_interactions', 'cell2_structures', 'cell2_repository']:
    try:
        ds = load_dataset("Milad96/Kluyveromyces-marxianus", split='train', data_dir=phase)
        all_data.append(ds)
    except:
        pass

combined = concatenate_datasets(all_data)
```

### Load Specific
```python
pathways = load_dataset("Milad96/Kluyveromyces-marxianus", split='train', data_dir='cell2_pathways')
interactions = load_dataset("Milad96/Kluyveromyces-marxianus", split='train', data_dir='cell2_interactions')
```

### Load Splits
```python
dataset = load_dataset("Milad96/Kluyveromyces-marxianus", data_dir='cell2_splits')
train = dataset['train']
val = dataset.get('validation')
test = dataset.get('test')
```

## Citation
```bibtex
@dataset{km_cell2_v10_0_0,
  title={Kluyveromyces marxianus Cell 2 Dataset},
  version={v10.0.0},
  year={2025},
  url={https://huggingface.co/datasets/Milad96/Kluyveromyces-marxianus}
}
```

**Status**: ✅ Production
**Quality**: 🌟 Quantum Grade
**Pipeline**: Async v10.0
**Compatibility**: Cell 0 ✓ | Cell 1 ✓ | Cell 2 ✓