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README.md

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 ---
-dataset_info:
-  features:
-  - name: id
-    dtype: string
-  - name: source
-    dtype: string
-  - name: category
-    dtype: string
-  - name: gene_id
-    dtype: string
-  - name: gene_name
-    dtype: string
-  - name: gene_symbol
-    dtype: string
-  - name: protein_id
-    dtype: string
-  - name: protein_name
-    dtype: string
-  - name: sequence
-    dtype: string
-  - name: title
-    dtype: string
-  - name: abstract
-    dtype: string
-  - name: full_text
-    dtype: string
-  - name: pmid
-    dtype: string
-  - name: doi
-    dtype: string
-  - name: authors
-    dtype: string
-  - name: journal
-    dtype: string
-  - name: year
-    dtype: string
-  - name: timestamp
-    dtype: string
-  splits:
-  - name: train
-    num_bytes: 40452
-    num_examples: 299
-  - name: validation
-    num_bytes: 4734
-    num_examples: 35
-  - name: test
-    num_bytes: 2433
-    num_examples: 18
-  download_size: 28311
-  dataset_size: 47619
-configs:
-- config_name: default
-  data_files:
-  - split: train
-    path: cell1_splits/train-*
-  - split: validation
-    path: cell1_splits/validation-*
-  - split: test
-    path: cell1_splits/test-*
+language: [en]
+license: cc-by-4.0
+task_categories: [text-generation,token-classification,question-answering]
+tags: [biology,kluyveromyces-marxianus,yeast,genomics,proteomics,bioinformatics]
+size_categories: ["10K<n<100K"]
 ---
+
+# 🧬 Kluyveromyces marxianus Quantum Dataset v10.0.0
+
+## Overview
+
+Comprehensive multi-omics dataset for *Kluyveromyces marxianus* collected using quantum-grade async streaming pipeline, fully integrated with Cell 0's structured directory system.
+
+### Statistics
+
+| Metric | Value |
+|--------|-------|
+| **Total Collected** | 3,836 |
+| **Total Local Saved** | 3,836 |
+| **Version** | v10.0.0 |
+| **Collection Date** | 2025-11-10 |
+
+### Data Categories & Local Storage
+
+- **Literature**: 1,417 records (local: 1,417)
+- **Proteins**: 1,001 records (local: 1,001)
+- **PMC Full-Text**: 1,000 records (local: 1,000)
+- **SRA Sequencing**: 352 records (local: 352)
+- **GEO Expression**: 48 records (local: 48)
+- **Nucleotide Sequences**: 18 records (local: 18)
+
+### Cell 0 Integration
+
+This dataset **strictly respects** Cell 0's directory structure. Only folders actively used by collectors:
+
+```
+km_dataset/
+├── genomic/          # Genes, nucleotide sequences
+├── protein/          # Protein sequences
+├── literature/       # PubMed, PMC articles
+├── expression/       # GEO, SRA sequencing data
+└── checkpoints/
+    └── cell1_quantum/  # Collection checkpoints
+```
+
+**Note**: Cell 0 also creates `pathway/`, `interaction/`, `structure/`, `repository/` folders, but current collectors don't produce data for these categories yet.
+
+### HuggingFace Organization
+
+Data is organized by phase using `data_dir` to prevent overwrites:
+- `cell1_genes` - Gene data
+- `cell1_proteins` - Protein sequences
+- `cell1_literature` - PubMed articles
+- `cell1_pmc` - PMC full-text articles
+- `cell1_sequences` - Nucleotide sequences
+- `cell1_geo` - GEO expression data
+- `cell1_sra` - SRA sequencing data
+- `cell1_splits` - Train/validation/test splits
+
+## Usage
+
+### Load All Data
+```python
+from datasets import load_dataset, concatenate_datasets
+
+# Load all phases (FIXED: correct data_dir names)
+all_data = []
+for phase in ['cell1_genes', 'cell1_proteins', 'cell1_literature',
+              'cell1_pmc', 'cell1_sequences', 'cell1_geo', 'cell1_sra']:
+    try:
+        ds = load_dataset("Milad96/Kluyveromyces-marxianus", split='train', data_dir=phase)
+        all_data.append(ds)
+    except:
+        pass
+
+combined = concatenate_datasets(all_data)
+```
+
+### Load Specific Phase
+```python
+# Load only genes
+genes = load_dataset("Milad96/Kluyveromyces-marxianus", split='train', data_dir='cell1_genes')
+
+# Load only literature
+literature = load_dataset("Milad96/Kluyveromyces-marxianus", split='train', data_dir='cell1_literature')
+```
+
+### Load Splits
+```python
+dataset = load_dataset("Milad96/Kluyveromyces-marxianus", data_dir='cell1_splits')
+train = dataset['train']
+val = dataset.get('validation')
+test = dataset.get('test')
+```
+
+## Citation
+```bibtex
+@dataset{km_quantum_v10_0_0,
+  title={Kluyveromyces marxianus Quantum Dataset},
+  version={v10.0.0},
+  year={2025},
+  url={https://huggingface.co/datasets/Milad96/Kluyveromyces-marxianus}
+}
+```
+
+**Status**: ✅ Production Ready
+**Quality**: 🌟 Quantum Grade
+**Pipeline**: Async Streaming v10.0 + Cell 0 Full Integration
+**Local Storage**: ✅ All records saved in structured folders
+**Overwrite Protection**: ✅ Phase-specific data_dirs