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provenance.json

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+{"prefix": {"pb": "https://github.com/NI3singh/provbench-bioactivity-catalog#", "chembl": "https://www.ebi.ac.uk/chembl/"}, "agent": {"pb:pipeline": {"prov:type": "prov:SoftwareAgent", "prov:label": "ProvBench curation pipeline"}}, "entity": {"chembl:EGFR-activities": {"prov:label": "ChEMBL EGFR IC50/Ki activities", "pb:upstreamSources": "BindingDB Patent Bioactivity Data, Chemical Probe data from Scientific Literature, DrugMatrix, EUbOPEN Chemogenomic Library Literature Data, PubChem BioAssays, SGC Frankfurt - Donated Chemical Probes, Scientific Literature, SureChEMBL Patent Bioactivity Data"}, "pb:standardized": {"prov:label": "Standardized source records"}, "pb:consensus": {"prov:label": "Consensus dataset", "pb:version": "1.0.0"}}, "activity": {"pb:standardize": {"prov:label": "RDKit standardization + InChIKey"}, "pb:harmonize": {"prov:label": "units->nM, pActivity, consensus"}, "pb:flag": {"prov:label": "ChEMBL-style validity flagging"}, "pb:qc": {"prov:label": "Landrum-Riniker QC report"}}, "wasAssociatedWith": {"_:id1": {"prov:activity": "pb:standardize", "prov:agent": "pb:pipeline"}, "_:id2": {"prov:activity": "pb:harmonize", "prov:agent": "pb:pipeline"}, "_:id3": {"prov:activity": "pb:flag", "prov:agent": "pb:pipeline"}, "_:id4": {"prov:activity": "pb:qc", "prov:agent": "pb:pipeline"}}, "used": {"_:id5": {"prov:activity": "pb:standardize", "prov:entity": "chembl:EGFR-activities"}, "_:id7": {"prov:activity": "pb:harmonize", "prov:entity": "pb:standardized"}, "_:id9": {"prov:activity": "pb:flag", "prov:entity": "pb:standardized"}, "_:id10": {"prov:activity": "pb:qc", "prov:entity": "pb:consensus"}}, "wasGeneratedBy": {"_:id6": {"prov:entity": "pb:standardized", "prov:activity": "pb:standardize"}, "_:id8": {"prov:entity": "pb:consensus", "prov:activity": "pb:harmonize"}}, "wasDerivedFrom": {"_:id11": {"prov:generatedEntity": "pb:standardized", "prov:usedEntity": "chembl:EGFR-activities"}, "_:id12": {"prov:generatedEntity": "pb:consensus", "prov:usedEntity": "pb:standardized"}}}