File size: 5,904 Bytes
c64ac01 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 | {
"format": "oscr-script-manifest/1",
"repository": "zenodo:20765877",
"url": "10.5281/zenodo.20765877",
"host": "zenodo.org",
"commit": "",
"license": "MIT",
"license_confirmed_by": "license file LICENSE",
"redistribution": "yes",
"files": [
{
"path": "LICENSE",
"sha256": "1a77fba277207010ec789db695ed1f7e5899bc90e846b995a288067b9f96f118",
"language": "License",
"lines": 36,
"truncated": false,
"block": 6,
"row": 2022
},
{
"path": "README.md",
"sha256": "e5fbe66bff7e3b6ee883c6057fcdb5687b5fb4ea16a01a4db4a123b0e1c0d0b3",
"language": "Text",
"lines": 180,
"truncated": false,
"block": 8,
"row": 10672
},
{
"path": "R_dependencies.R",
"sha256": "d8c63bf96287679201db558f3e158ba30117c1ba58d9bdc3955951b0cc62a781",
"language": "R",
"lines": 17,
"truncated": false,
"block": 8,
"row": 1474
},
{
"path": "data\\herb_list.py",
"sha256": "b0178511ca88936d566a2ae413ccad0e2037adfc12a559c336d4a71b7ca25d76",
"language": "Python",
"lines": 110,
"truncated": false,
"block": 6,
"row": 41087
},
{
"path": "scripts\\apply_ref_audit.py",
"sha256": "6b4bcf17134256d6b100ea9a66cbfdda6345ccb3e1534181034ac3de96f55396",
"language": "Python",
"lines": 67,
"truncated": false,
"block": 6,
"row": 41679
},
{
"path": "scripts\\clean_supp_tables.py",
"sha256": "be8371bc2637fa381da7a5c7464fe331044b4380d5d8614096cc54dbe609d678",
"language": "Python",
"lines": 99,
"truncated": false,
"block": 6,
"row": 43087
},
{
"path": "scripts\\editor_round2_analyses.py",
"sha256": "516f90b5634144551e698f21445ea8676862ec560db19f3f00c56c14d553f95c",
"language": "Python",
"lines": 257,
"truncated": false,
"block": 7,
"row": 3444
},
{
"path": "scripts\\generate_figures.py",
"sha256": "302fde57276f9b76c446be8e2a388eca850b30f13f450c9b19515ee9130f7306",
"language": "Python",
"lines": 668,
"truncated": false,
"block": 7,
"row": 10878
},
{
"path": "scripts\\p1_compile_data.py",
"sha256": "87f545d5e9bdf4e3e979a81973248a3290ee7d41a9a152966a8a8f785b6b7e32",
"language": "Python",
"lines": 201,
"truncated": false,
"block": 7,
"row": 2931
},
{
"path": "scripts\\p1_tcmnp_query.R",
"sha256": "76fdb89ec12e6045a9ed6d48acbb98a1ae318c0d5b26396274cbac73c28c7504",
"language": "R",
"lines": 115,
"truncated": false,
"block": 8,
"row": 2978
},
{
"path": "scripts\\p1_tcmsp_scraper.py",
"sha256": "e100c762e6123c51701eb089e2bd0c7244f27ab7dd879960e1a4f5416c86087f",
"language": "Python",
"lines": 174,
"truncated": false,
"block": 6,
"row": 43425
},
{
"path": "scripts\\p2_pathway_classification.R",
"sha256": "523643f637f75d971c01d116057094b9ecd3aacacd294190380319d48b55729a",
"language": "R",
"lines": 218,
"truncated": false,
"block": 8,
"row": 3912
},
{
"path": "scripts\\p3_admet_screening.py",
"sha256": "5ea39cad27ad65e8c10216bb53f697a7a7a5b06d57c91f97706ceb489cf5e94c",
"language": "Python",
"lines": 421,
"truncated": false,
"block": 7,
"row": 5685
},
{
"path": "scripts\\p4_molecular_docking.py",
"sha256": "5a0548c6884051854578c6da2a75ebc7a49095ba3a2ba02f4e0bca8d05417cb3",
"language": "Python",
"lines": 410,
"truncated": false,
"block": 7,
"row": 7268
},
{
"path": "scripts\\p4_supplementary_docking.py",
"sha256": "250bdd2b7c6ec4d13fc7a14a56a46b8d055103cdef6643f8e184dcc4148f5843",
"language": "Python",
"lines": 275,
"truncated": false,
"block": 7,
"row": 2900
},
{
"path": "scripts\\p6_geo_dual_disease.R",
"sha256": "1ccd0502128c8c50d95af7ebc4e286eed2bbabf203d87d6079c9d8de56674cf6",
"language": "R",
"lines": 251,
"truncated": false,
"block": 8,
"row": 4148
},
{
"path": "scripts\\p7_tissue_specificity.py",
"sha256": "8e3734bcb2646c230ff22c6fd69c9fd8bb0433d1f3ff7963f57c4d4857b01c44",
"language": "Python",
"lines": 303,
"truncated": false,
"block": 7,
"row": 5167
},
{
"path": "scripts\\p7_twas_demote.py",
"sha256": "385d20242a30b1bb6b7fd3b63438f2db4dd3a993642b0cbe1fd00a2a10fee571",
"language": "Python",
"lines": 72,
"truncated": false,
"block": 6,
"row": 36693
},
{
"path": "scripts\\p7_twas_final.py",
"sha256": "1fffea7d33098fbe74d7d8376b15eebfb161fbf157b133c40cc86decc65520e2",
"language": "Python",
"lines": 172,
"truncated": false,
"block": 7,
"row": 347
},
{
"path": "scripts\\p7_twas_recalculation.py",
"sha256": "e05981ca23e642a16b5aaba6fe10bed9dc0c7afb9d131915f14d02b7ebca392d",
"language": "Python",
"lines": 208,
"truncated": false,
"block": 7,
"row": 1078
},
{
"path": "scripts\\p7_twas_v2.py",
"sha256": "5680327c080cbfebe5e48d44ea8261d501bd0d9c1fe8ad8a19b1838fcd09195e",
"language": "Python",
"lines": 189,
"truncated": false,
"block": 6,
"row": 45549
},
{
"path": "scripts\\p8_generalization.py",
"sha256": "bb765d71ea8a914576629993e9ea968bc74ae55865f9f48e01b90b197aff754c",
"language": "Python",
"lines": 126,
"truncated": false,
"block": 6,
"row": 42829
},
{
"path": "scripts\\p9_figures_repositioned.py",
"sha256": "fe7f88c1b56684e15b3bd0f6a14322f66a0d5900757b3c77c536229329682204",
"language": "Python",
"lines": 116,
"truncated": false,
"block": 6,
"row": 41630
},
{
"path": "scripts\\to_author_date.py",
"sha256": "11ddef00ca5ffef63a6ff13e22b3e15a6cb852619831723263dafefd49589c26",
"language": "Python",
"lines": 75,
"truncated": false,
"block": 6,
"row": 45262
},
{
"path": "scripts\\verify_claims.py",
"sha256": "401c5fda4894f4f0fb1114808cf32b10c57dc7f64847c09e88575cdcd89750d3",
"language": "Python",
"lines": 63,
"truncated": false,
"block": 6,
"row": 37535
}
]
} |