Database / manifests /07 /github.com__rnajena__dynamont.json
opsecsystems's picture
Scripts of 2026-10-01: 3 new block(s), 1272 manifest(s), 0 removed
1eb821d verified
Raw History Blame Contribute Delete
8.12 kB
{
"format": "oscr-script-manifest/1",
"repository": "github.com/rnajena/dynamont",
"url": "https://github.com/rnajena/dynamont/tree/0.8.1",
"host": "github.com",
"commit": "5fc0da10bea8f9ad23a2019a01682a6357a367c3",
"license": "GPL-3.0",
"license_confirmed_by": "license file LICENSE",
"redistribution": "yes",
"files": [
{
"path": "LICENSE",
"sha256": "f817886ee6bb65ed3098a7987b1e9781653d15c71f85589ce0d2af663c66d373",
"language": "License",
"lines": 674,
"truncated": false,
"block": 11,
"row": 14440
},
{
"path": "README.md",
"sha256": "3ff3c8c545e9b18ae2d67b33600114476ca883e35d45e7e8493956625b5979d5",
"language": "Text",
"lines": 99,
"truncated": false,
"block": 13,
"row": 6640
},
{
"path": "README.rst",
"sha256": "19179e273e3b6c4b62817c2f7810a824dc14318db6203cf94db790dad3e9d59a",
"language": "Text",
"lines": 45,
"truncated": false,
"block": 13,
"row": 6189
},
{
"path": "build.sh",
"sha256": "e53f0d4e191e6c6efa6692851868328ab1df33e7e8bd627dca8f99fe955e6d04",
"language": "Shell",
"lines": 40,
"truncated": false,
"block": 13,
"row": 5043
},
{
"path": "models/9merTo5mer.py",
"sha256": "f7f7e18f9362063e96c0e06913e62188193e65982c641e5ca9a2256bffe8bf53",
"language": "Python",
"lines": 70,
"truncated": false,
"block": 12,
"row": 8627
},
{
"path": "src/cpp/NTK_aligner_api.cpp",
"sha256": "0c84f039b4a4e9888077d864b7ce81a9bd82caf28a8c19d0b5fb72abb1a87e36",
"language": "C++",
"lines": 929,
"truncated": false,
"block": 11,
"row": 4272
},
{
"path": "src/cpp/NT_aligner_api.cpp",
"sha256": "d97b3ec49fc77c70306476af14c263b1aaacd93d72c59f20b103302eef9e2c46",
"language": "C++",
"lines": 727,
"truncated": false,
"block": 11,
"row": 4139
},
{
"path": "src/cpp/aligner.cpp",
"sha256": "e8350fbf7760d23b3cded83a139bf4bda3a2b820bb918788f9c0a1c6e1b7f05d",
"language": "C++",
"lines": 294,
"truncated": false,
"block": 11,
"row": 3293
},
{
"path": "src/cpp/aligner_bindings.cpp",
"sha256": "dcbc77381c01c17a436e86e5dad4ab06cd4a1d8f8870366aa5f1f0503b415aeb",
"language": "C++",
"lines": 219,
"truncated": false,
"block": 11,
"row": 3301
},
{
"path": "src/dynamont/__init__.py",
"sha256": "a30b1f62469f51675ba2dc7c81b4585b949b0b2c7655eefb4923fb1e9b67bfc9",
"language": "Python",
"lines": 13,
"truncated": false,
"block": 12,
"row": 3914
},
{
"path": "src/dynamont/misc/__init__.py",
"sha256": "79a3188fae02ecd4d5c445bf70e9ae7c237c75d61a01b42986557aa7e56a2fa0",
"language": "Python",
"lines": 3,
"truncated": false,
"block": 12,
"row": 3196
},
{
"path": "src/dynamont/misc/collectMetrics.py",
"sha256": "0813c767fa222d3f65e13dd66c34049ccaf55298125c809aa62207c49dc1d330",
"language": "Python",
"lines": 208,
"truncated": false,
"block": 12,
"row": 17459
},
{
"path": "src/dynamont/misc/compareDatasets.py",
"sha256": "2d7bc4874049b00e07ac11855b896bb9f5ad7a957d8f40c47cdd3f5353c05f0a",
"language": "Python",
"lines": 334,
"truncated": false,
"block": 12,
"row": 20943
},
{
"path": "src/dynamont/misc/compareTools.py",
"sha256": "97e64356903c3d8f7d570d71bba8ba39d083e0b4ec90f364d037e1610e56dc86",
"language": "Python",
"lines": 1205,
"truncated": false,
"block": 13,
"row": 252
},
{
"path": "src/dynamont/misc/csv_to_ms_heatmap.py",
"sha256": "28ab850f049b7e8c06e595add1c4e968431e1faceb6e479629788dcb6b39afcf",
"language": "Python",
"lines": 244,
"truncated": false,
"block": 12,
"row": 17712
},
{
"path": "src/dynamont/misc/csv_to_tex.py",
"sha256": "8bacfd1c664b18d96cc41ad7b4374b8c5c5b1fb480ecdd53a5bbfa071cfde9cc",
"language": "Python",
"lines": 183,
"truncated": false,
"block": 12,
"row": 16450
},
{
"path": "src/dynamont/misc/edgeDetection.py",
"sha256": "34ac8906b8b1e06f74cba95e9a3daff1ef399d5c4fdbb41fa73828a659026a82",
"language": "Python",
"lines": 247,
"truncated": false,
"block": 12,
"row": 18167
},
{
"path": "src/dynamont/misc/evaluateReads.py",
"sha256": "c75a09b488c6b2c2dd7561ab08b39676bd6ce3ad1efe7726c96e084229c2097f",
"language": "Python",
"lines": 235,
"truncated": false,
"block": 12,
"row": 16189
},
{
"path": "src/dynamont/misc/evaluateSubsequentTools.py",
"sha256": "e60c9db6080ef6676c2267f2240bc3a53c9b9900b99757e48e250220d530c818",
"language": "Python",
"lines": 116,
"truncated": false,
"block": 12,
"row": 11134
},
{
"path": "src/dynamont/misc/extractDoradoMoves.py",
"sha256": "a7b9a648992b8e9e761fdef11bcdbd6d5a926b25520ef0c1b170fabc797d6e46",
"language": "Python",
"lines": 84,
"truncated": false,
"block": 12,
"row": 11618
},
{
"path": "src/dynamont/misc/segToFasta.py",
"sha256": "2863543685558b78eab2b3d53a9db0690ca8646132bcd8850032488cd11b9097",
"language": "Python",
"lines": 162,
"truncated": false,
"block": 12,
"row": 14605
},
{
"path": "src/dynamont/misc/tomboToFasta.py",
"sha256": "49e1817d994456c1e4f5d5901a528b4504d3afd05f94bc458a1e2b3ee6d5db65",
"language": "Python",
"lines": 93,
"truncated": false,
"block": 12,
"row": 10529
},
{
"path": "src/dynamont/plot/__init__.py",
"sha256": "79a3188fae02ecd4d5c445bf70e9ae7c237c75d61a01b42986557aa7e56a2fa0",
"language": "Python",
"lines": 3,
"truncated": false,
"block": 12,
"row": 3196
},
{
"path": "src/dynamont/plot/plotSegmentation.py",
"sha256": "40c7302984f72182b396f41404ee78b80708beb10b8ac38405e6201f52364b43",
"language": "Python",
"lines": 327,
"truncated": false,
"block": 12,
"row": 19725
},
{
"path": "src/dynamont/plot/plotToolSegments.py",
"sha256": "90522a76302437f8585a51c3606daeeb6622a0e7c236fcf933e3901c0ef408e1",
"language": "Python",
"lines": 284,
"truncated": false,
"block": 12,
"row": 19337
},
{
"path": "src/dynamont/plot/plotTrainedParams.py",
"sha256": "a93fd2e80c96ac0ed126550bed7d023cb62cd912ad5a44c13278e59bb3f371aa",
"language": "Python",
"lines": 22,
"truncated": false,
"block": 12,
"row": 4944
},
{
"path": "src/dynamont/pod5_io.py",
"sha256": "413769b3e553b1423697b5651299e48688eb753d6c60b5a9253302b1b1afe1b7",
"language": "Python",
"lines": 16,
"truncated": false,
"block": 12,
"row": 4957
},
{
"path": "src/dynamont/segmentation/__init__.py",
"sha256": "79a3188fae02ecd4d5c445bf70e9ae7c237c75d61a01b42986557aa7e56a2fa0",
"language": "Python",
"lines": 3,
"truncated": false,
"block": 12,
"row": 3196
},
{
"path": "src/dynamont/segmentation/segment.py",
"sha256": "664fcd1cb4aa3ed09df3908c6483e7e229082452fec8b484cbe5532a264f7222",
"language": "Python",
"lines": 398,
"truncated": false,
"block": 12,
"row": 19231
},
{
"path": "src/dynamont/segmentation/train.py",
"sha256": "fc958ebeec89018ffa20b690a4125bb31ab6608f11947196457d67e5fff28016",
"language": "Python",
"lines": 277,
"truncated": false,
"block": 12,
"row": 19003
},
{
"path": "src/dynamont/segmentation/utils.py",
"sha256": "b7d1ba2a78d21413e3dc5322738e0e8c7878130c4b18b139ec753a42a681a625",
"language": "Python",
"lines": 256,
"truncated": false,
"block": 12,
"row": 16831
},
{
"path": "tests/test_managed_list.py",
"sha256": "0ced11557bda88c09f8b324ba6eabc8d060b03f1d98d71547af540c38da07e8b",
"language": "Python",
"lines": 61,
"truncated": false,
"block": 12,
"row": 8063
},
{
"path": "tests/test_segment.py",
"sha256": "37263734af24d8e43fbca768c7317de275206ff36bd3fa69f0c678136aa078c2",
"language": "Python",
"lines": 262,
"truncated": false,
"block": 12,
"row": 16881
},
{
"path": "tests/test_utils.py",
"sha256": "2657891a2af7ff2c10a0bacc891e900570a14f1e5c9857d776bdd3273dfefe38",
"language": "Python",
"lines": 131,
"truncated": false,
"block": 12,
"row": 12488
}
]
}