Download manifests/14/github.com__wangjr03__flamingo.json from OpenScientificCodeRegistry/Database: direct link, hf CLI and curl.
- Browser
- Download file 8.72 kB
-
https://huggingface.co/datasets/OpenScientificCodeRegistry/Database/resolve/main/manifests/14/github.com__wangjr03__flamingo.json
- Command line
-
hf download hf://datasets/OpenScientificCodeRegistry/Database/manifests/14/github.com__wangjr03__flamingo.json
-
curl -L -o github.com__wangjr03__flamingo.json https://huggingface.co/datasets/OpenScientificCodeRegistry/Database/resolve/main/manifests/14/github.com__wangjr03__flamingo.json
8.72 kB
| { | |
| "format": "oscr-script-manifest/1", | |
| "repository": "github.com/wangjr03/flamingo", | |
| "url": "https://github.com/wangjr03/FLAMINGO", | |
| "host": "github.com", | |
| "commit": "b81cde591bcea2cdced5bd60ade0088927806e22", | |
| "license": "MIT", | |
| "license_confirmed_by": "license file LICENSE", | |
| "redistribution": "yes", | |
| "files": [ | |
| { | |
| "path": "FLAMINGOr/R/flamingo.assemble_structure.R", | |
| "sha256": "9b6757273185867b5367c3e7316220ad36f048e21d9a0f04d4c4902b1b22d506", | |
| "language": "R", | |
| "lines": 148, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16174 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.calculating_epigenomic_signal.R", | |
| "sha256": "4bfea8cc7af0effbf1d0df1c3472d54a35958d04799fa37cde546ee3902e8f88", | |
| "language": "R", | |
| "lines": 22, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15592 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.construct_flamingo_from_hic.R", | |
| "sha256": "fc89819c18fb68b9c74361d47c1374616462c043259ab7b2ad586085700e6ce5", | |
| "language": "R", | |
| "lines": 33, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15641 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.construct_flamingo_from_mcool.R", | |
| "sha256": "6a246274ba9e0d8e36086eb45569533af41df39128a3907b378ddb0f284d6940", | |
| "language": "R", | |
| "lines": 52, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15806 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.construct_flamingo_from_sparse_matrix.R", | |
| "sha256": "8500c516030a551643de44901cc9b199e4c0878f27b0c625f12dbde4b894f7f4", | |
| "language": "R", | |
| "lines": 41, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15686 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.divide_domain.R", | |
| "sha256": "f3370b3bafb7e546cbfd8fe1be725c2ca506a4b1afb660f126b419fabc2e17f2", | |
| "language": "R", | |
| "lines": 41, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15691 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.estimate_alpha.R", | |
| "sha256": "1d8d7ae537100c03e3216a71b0c069945d4ba6f39c452b62b30f69963af3b6af", | |
| "language": "R", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15483 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.impute_dist_from_epi.R", | |
| "sha256": "df6bd29940d17910210b0fa7570d7274af9b6bf0171b9e8b47c8003dd9209534", | |
| "language": "R", | |
| "lines": 26, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15588 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.init_object.R", | |
| "sha256": "97eeaac83e59e9a3448e3629a49511c7959d955e052e4c5b187e2db1d643c693", | |
| "language": "R", | |
| "lines": 9, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15501 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.main_func.R", | |
| "sha256": "6a1c2c333bbdf83d3a570d6165d84fd878196e1088318cceb937633c5ece16cb", | |
| "language": "R", | |
| "lines": 89, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16285 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.main_func_large.R", | |
| "sha256": "7ac6b5ed098e004684c152bed5e7290c152d2a35afe3f86815a7c98ae928a031", | |
| "language": "R", | |
| "lines": 106, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16383 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.reconstruct_backbone_structure.R", | |
| "sha256": "9a1612155a730aa4cd2d6230d14f1a8f6feb5024607f4856087c6281542a4ca8", | |
| "language": "R", | |
| "lines": 15, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15558 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.reconstruct_structure.R", | |
| "sha256": "dc6319a88aadba8e8b7f99cc5ebbb1db67a4f082fb9f782c3eef296c046eedf0", | |
| "language": "R", | |
| "lines": 32, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15615 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.reconstruct_structure_worker.R", | |
| "sha256": "bd6854334dd519a4fc482b51b72056dc1121cfc56825be0463faed8f5384b0d4", | |
| "language": "R", | |
| "lines": 99, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15996 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.reconstruct_structure_wraper.R", | |
| "sha256": "541a7d16a39f672e72f68209b3ecc337376e3410c017b9a0f84f57fdb09cf72b", | |
| "language": "R", | |
| "lines": 23, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15565 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/flamingo.utils.R", | |
| "sha256": "e30fde02dfe5f055d4f576565c2c20758b4488a5c77eca00df70a6909640111d", | |
| "language": "R", | |
| "lines": 321, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16378 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/iflamingo.main_func.R", | |
| "sha256": "4deaff726cecfc907d2051c2fbf738cf12e0148fdd5729c4f6b82001dc12a9a4", | |
| "language": "R", | |
| "lines": 94, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16309 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/iflamingo.reconstruct_structure.R", | |
| "sha256": "28c9f168e4e5421269e0295b6c88901df014d7fc036487d407300386c65c7e77", | |
| "language": "R", | |
| "lines": 32, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15627 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/iflamingo.reconstruct_structure_worker.R", | |
| "sha256": "4d3a9afca2f07ed10ff5abed36552a3da7d3e1a7314ace7139ccd2a4f56fe014", | |
| "language": "R", | |
| "lines": 98, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16016 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/iflamingo.reconstruct_structure_wraper.R", | |
| "sha256": "4335e941f03fcc46e33d606452f4f4993de874733abd5c2afb2fa943908d6447", | |
| "language": "R", | |
| "lines": 25, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15605 | |
| }, | |
| { | |
| "path": "FLAMINGOr/R/write.vtk.R", | |
| "sha256": "e56d576beae24d081d54f786b37881080d0a25a0f45bab749999bbb40e636376", | |
| "language": "R", | |
| "lines": 28, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15706 | |
| }, | |
| { | |
| "path": "FLAMINGOr/tests/testthat.R", | |
| "sha256": "45da4de9747181f3f04aa72dc51d8736a5a735ed4a08abc6c3e6172643059104", | |
| "language": "R", | |
| "lines": 4, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15419 | |
| }, | |
| { | |
| "path": "FLAMINGOr/tests/testthat/test-flamingo.R", | |
| "sha256": "79b0200c9538c47e4aa5a7a3404d653c1f468e25be95bc042724bd7d2e558b34", | |
| "language": "R", | |
| "lines": 3, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15422 | |
| }, | |
| { | |
| "path": "LICENSE", | |
| "sha256": "179ae4b080d68285de47b679449cb91fbbbcdf33aaac0b42bb3d3f9fbf8d854f", | |
| "language": "License", | |
| "lines": 21, | |
| "truncated": false, | |
| "block": 22, | |
| "row": 13882 | |
| }, | |
| { | |
| "path": "README.md", | |
| "sha256": "01ffa11080ca0922830c9f40329686ab329d53e2adcfa36459d246b926b25101", | |
| "language": "Text", | |
| "lines": 300, | |
| "truncated": false, | |
| "block": 24, | |
| "row": 968 | |
| }, | |
| { | |
| "path": "code/1_preprocess_HiC.R", | |
| "sha256": "69f4d4634df6fdb9258c78e8caecf942a0b20df9bfd02bc5532e4dce1d1046f9", | |
| "language": "R", | |
| "lines": 49, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15576 | |
| }, | |
| { | |
| "path": "code/2_generate_fragment_data.R", | |
| "sha256": "1d1d57f72d256e195688c63ae2314415620dbe229b19341dfb06bad9902501d1", | |
| "language": "R", | |
| "lines": 26, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15524 | |
| }, | |
| { | |
| "path": "code/3_generate_fragment_DNase.R", | |
| "sha256": "4866f1a5e044d08e0a5e59a7476b3d783e0389542ad97edba8886f83637ddaf1", | |
| "language": "R", | |
| "lines": 21, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15498 | |
| }, | |
| { | |
| "path": "code/4_generate_DNase_profile.R", | |
| "sha256": "80fcc22bce90b585689e00b90660bd3ac85be7f8c91042f6a6cfb0c70757d6ad", | |
| "language": "R", | |
| "lines": 34, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15545 | |
| }, | |
| { | |
| "path": "code/4_generate_DNase_profile.sh", | |
| "sha256": "156131284bcdc106827255966c9f79923818c616d7c82adfd1a434bd33a2d4c3", | |
| "language": "Shell", | |
| "lines": 8, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 17122 | |
| }, | |
| { | |
| "path": "code/5_impute_DNase_dist.R", | |
| "sha256": "ddf3dd0df78a2a3cb4252e8db662d5bee8cc1817b0a3c0811bc7a14d3ce48b6d", | |
| "language": "R", | |
| "lines": 30, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15556 | |
| }, | |
| { | |
| "path": "code/6_generate_backbone_data.R", | |
| "sha256": "d62c6e72f481b25b959cbf1b116eae971d754abbce82e9fc3115e52fc73d8582", | |
| "language": "R", | |
| "lines": 43, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 15569 | |
| }, | |
| { | |
| "path": "code/7_reconstruct_model_DNase.R", | |
| "sha256": "d7c282cf7d1e159022637fd58d67cbafeb1845b730589159b254c7f4522b45dc", | |
| "language": "R", | |
| "lines": 366, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16325 | |
| }, | |
| { | |
| "path": "code/7_reconstruct_within_cellline.R", | |
| "sha256": "810ca8e902b80cc4d915837de3630118c87dbb13aedd49d877c65b4997ac0354", | |
| "language": "R", | |
| "lines": 354, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16283 | |
| }, | |
| { | |
| "path": "code/8_ensemble_structure_V2.R", | |
| "sha256": "accaffacc9d60de5fab7b34cfab0aadec0504301c80f7ef37fe3340073d4bc14", | |
| "language": "R", | |
| "lines": 244, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 16239 | |
| }, | |
| { | |
| "path": "code/process_data_wrapper.sh", | |
| "sha256": "f634ccc361b90a030901b875b5b2b93b817a6a3cb7fb08636430c54fac3ba1c9", | |
| "language": "Shell", | |
| "lines": 7, | |
| "truncated": false, | |
| "block": 23, | |
| "row": 17269 | |
| } | |
| ] | |
| } |