{ "format": "oscr-script-manifest/1", "repository": "github.com/ecco-laboratory/looming-fmri-naturalistic", "url": "https://github.com/ecco-laboratory/looming-fmri-naturalistic", "host": "github.com", "commit": "4f44dda4673edda0463951ef069538cbff1fbf9e", "license": "MIT", "license_confirmed_by": "license file LICENSE", "redistribution": "yes", "files": [ { "path": "LICENSE", "sha256": "c9279df47915ce736ac28d7bea58025643a31da8c4d696dc551072c7d71c0753", "language": "License", "lines": 21, "truncated": false, "block": 11, "row": 13954 }, { "path": "README.md", "sha256": "eedf658003e57e1f87a650da05736f371162f9e7fcf8a16e684b6e64399a7066", "language": "Text", "lines": 123, "truncated": false, "block": 13, "row": 6896 }, { "path": "code/R/call-activations.R", "sha256": "03cb938c1b3bd7e0b208496a4b1cb9dcf1a880a93fbb553ae4612a23a1ffcca8", "language": "R", "lines": 57, "truncated": false, "block": 13, "row": 1330 }, { "path": "code/R/call-canlabtools.R", "sha256": "4741b57c75423822d1702a2c8401bcc666d8c20caeddda448ed2153e207d9bb7", "language": "R", "lines": 306, "truncated": false, "block": 13, "row": 2857 }, { "path": "code/R/call-spm.R", "sha256": "cbb2726a9269f7a7a777daeeeb7945a2d6e23d357ed4070bfdcddc5df79e0d00", "language": "R", "lines": 118, "truncated": false, "block": 13, "row": 2000 }, { "path": "code/R/check-upstream-targets.R", "sha256": "46dce4a9091e468171878932601d98ad8c68e59940d62ca6558933086a74bd21", "language": "R", "lines": 27, "truncated": false, "block": 13, "row": 976 }, { "path": "code/R/define-targets-fmri.R", "sha256": "0ba7d4e3427d7b7e7ff1a439d89225b7aeb6c97b52e04485cc6d87d1b95cc768", "language": "R", "lines": 179, "truncated": false, "block": 13, "row": 2612 }, { "path": "code/R/define-targets-scripts.R", "sha256": "adadca016fe0c01998cc24eec1ee85cc7317906795c8963a3ba18792b4c7657f", "language": "R", "lines": 157, "truncated": false, "block": 13, "row": 1951 }, { "path": "code/R/fmri_naturalistic_ms_report.rmd", "sha256": "dd97802a721d73d0632a93a3b7e888839c4109b637d58675c6d0fb66124a7c5e", "language": "R", "lines": 313, "truncated": false, "block": 13, "row": 2641 }, { "path": "code/R/fmri_naturalistic_ms_supp.Rmd", "sha256": "996211bad71d1fe7119e92407d8c3d6dd4056ddc0cfdecb9282a4eaf0be38d78", "language": "R", "lines": 135, "truncated": false, "block": 13, "row": 2217 }, { "path": "code/R/make-plots.R", "sha256": "b3c40ca0d66e387a4ac7fc48a2ec628201fd1ca06e84c5c4fba5a71b9d88eaa0", "language": "R", "lines": 743, "truncated": false, "block": 13, "row": 3299 }, { "path": "code/R/make-rdms.R", "sha256": "1b6422afb4fda705ea22c2514daa9888aa17eef7e9206ca8e61b3a3bd4cabc70", "language": "R", "lines": 36, "truncated": false, "block": 13, "row": 1101 }, { "path": "code/R/make-stimlist.R", "sha256": "7d64cc20c1514f1fa1ffa7be2960246660d9936d1d1e2d90f40da6989c135ce8", "language": "R", "lines": 185, "truncated": false, "block": 13, "row": 2507 }, { "path": "code/R/parse-ann-preds.R", "sha256": "c48d85b732c12e19b85d2d0d59459fb5a9647ab42ed19bc6c05a7f74d0e37721", "language": "R", "lines": 85, "truncated": false, "block": 13, "row": 1928 }, { "path": "code/R/parse-bold.R", "sha256": "2e53bd0e70a6dd1b17901cb753dc7b07bd87d26d37f08163000a2da0045e7480", "language": "R", "lines": 15, "truncated": false, "block": 13, "row": 896 }, { "path": "code/R/parse-confounds.R", "sha256": "69db85221b15889b1cb00da5993e13b24825fc2a1b8dde048e2362c364696f89", "language": "R", "lines": 127, "truncated": false, "block": 13, "row": 2102 }, { "path": "code/R/parse-events.R", "sha256": "319f9559e6e3fb1c25b229c5b47eb046103a5c5187dc97b091a2165e592c8efa", "language": "R", "lines": 356, "truncated": false, "block": 13, "row": 2964 }, { "path": "code/R/parse-parcels.R", "sha256": "0fcfc89a80a2432fc4bf0b12b6aa8e8eda33ddb2a8012bbd829a662925eed50a", "language": "R", "lines": 84, "truncated": false, "block": 13, "row": 1660 }, { "path": "code/R/parse-qualtrics.R", "sha256": "c14c50fb116c15e1c7d0ab42e024772250ab5694bb0b1e11a66dfe06795175a1", "language": "R", "lines": 52, "truncated": false, "block": 13, "row": 1479 }, { "path": "code/R/proc-classify-controlled.R", "sha256": "bdcc67c4c9b0f0b1c69a1c8fab6fec61cf4995836b289fd9907830c58c6fa8e3", "language": "R", "lines": 17, "truncated": false, "block": 13, "row": 1041 }, { "path": "code/R/proc-post-canlabtools.R", "sha256": "bb33ed22b06f38822a4c110a6d292a4482605dd283f872a7ef4638591fe3715c", "language": "R", "lines": 721, "truncated": false, "block": 13, "row": 3293 }, { "path": "code/R/set-study-defaults.R", "sha256": "e966cb4bc8d92cb6560c6f1bd4bfa09edabcced02c40d8180729a8958e6eb73c", "language": "R", "lines": 70, "truncated": false, "block": 13, "row": 1634 }, { "path": "code/R/utils/call-matlab.R", "sha256": "6f959983e4fd7b12382a627321c0984e697399ece45e82f66959375877f1c047", "language": "R", "lines": 30, "truncated": false, "block": 13, "row": 1073 }, { "path": "code/R/utils/call-python.R", "sha256": "e6587df120511c90db64ed00fe3a375dc382d8b3294b4a310bbf2fc4cff081b8", "language": "R", "lines": 6, "truncated": false, "block": 13, "row": 802 }, { "path": "code/R/utils/latin-square.R", "sha256": "63df19f70469011f487a12b2a5e2db791c6f47d59c0f10db8309f81f40557e2f", "language": "R", "lines": 29, "truncated": false, "block": 13, "row": 1065 }, { "path": "code/R/utils/stats-helpers.R", "sha256": "9bf2c415829ffe0ec8233bb3292e50dd5fad811f213f57d2fcea7d6e5b9ac144", "language": "R", "lines": 48, "truncated": false, "block": 13, "row": 1260 }, { "path": "code/R/utils/targets-helpers.R", "sha256": "8934d06c7a82b98d47a2d3faeae2f63c5ac1cd52017b1c2e37abec9b1bd2527d", "language": "R", "lines": 16, "truncated": false, "block": 13, "row": 927 }, { "path": "code/R/utils/tidymodels-helpers.R", "sha256": "40acfd6a4c6f3a0e68072bf586df843087ae9c8af71183a6d6e66603a44b737c", "language": "R", "lines": 276, "truncated": false, "block": 13, "row": 2771 }, { "path": "code/_targets_controlled.R", "sha256": "a1cca4eacce792e8a002b311840b0f9203a59ede1846719183181400802bf81b", "language": "R", "lines": 612, "truncated": false, "block": 13, "row": 3276 }, { "path": "code/_targets_naturalistic.R", "sha256": "610c5a6b8e9ce8ab0078706e3ce9d4c8f5a7e2498f46f5dbfc31cc511c7b71a2", "language": "R", "lines": 2402, "truncated": false, "block": 13, "row": 3482 }, { "path": "code/matlab/apply_wb_signature_canlabtools.m", "sha256": "c446b77086fc34ece064444633fce9eb06612940dbcd96164be0b1e71c6d4433", "language": "MATLAB", "lines": 72, "truncated": false, "block": 11, "row": 21862 }, { "path": "code/matlab/calc_contrasts_level1_controlled.m", "sha256": "a0072d0cdb3cda28001f710a7b1f550b4bad7688f3cf8052e575138a907b36c3", "language": "MATLAB", "lines": 69, "truncated": false, "block": 11, "row": 23310 }, { "path": "code/matlab/calc_contrasts_level1_naturalistic.m", "sha256": "e9319d910d5c767d252fb0f355a1924c49e6136b0ee52bc040d33dc3ea3c9bb4", "language": "MATLAB", "lines": 19, "truncated": false, "block": 11, "row": 18815 }, { "path": "code/matlab/calc_ittikoch_activations.m", "sha256": "2455058a7e7f2f3b65f73b79d9d737ef727f8f53c44da71c803565576bdca95e", "language": "MATLAB", "lines": 31, "truncated": false, "block": 11, "row": 17194 }, { "path": "code/matlab/combine_mask_betas_canlabtools.m", "sha256": "b3da556fb4eb32663dac40dfd2139d003e3f324e72f65c08201df2b1d4e88a08", "language": "MATLAB", "lines": 54, "truncated": false, "block": 11, "row": 20085 }, { "path": "code/matlab/decode_objects_from_SC.m", "sha256": "34aceaf13757ebef1279552ba83c5e9a9a4e1c194dba0f55b0d7cf7c9e1836b1", "language": "MATLAB", "lines": 144, "truncated": false, "block": 11, "row": 22771 }, { "path": "code/matlab/export_mask_nifti_canlabtools.m", "sha256": "98965949f48f347e624103ae537a14ed3ab249771a302deeab1336074d97773b", "language": "MATLAB", "lines": 37, "truncated": false, "block": 11, "row": 18365 }, { "path": "code/matlab/export_statmap_canlabtools.m", "sha256": "769428e81d71b025fc44cf79307eb6db6f84f7f988c4a8ea58c237f95ec1046a", "language": "MATLAB", "lines": 49, "truncated": false, "block": 11, "row": 20152 }, { "path": "code/matlab/fit_modelbased_connectivity_canlabtools.m", "sha256": "a671ce408863bb60387807cf711f95733bf2a78b375fa9835ce48b4a8437bb43", "language": "MATLAB", "lines": 65, "truncated": false, "block": 11, "row": 21929 }, { "path": "code/matlab/fit_pls_canlabtools.m", "sha256": "2da6af7cca3e203b751d87bf297c5c094f3b36d6781feed6c35d3bfd58a237eb", "language": "MATLAB", "lines": 120, "truncated": false, "block": 11, "row": 23373 }, { "path": "code/matlab/fit_pls_no_xval_canlabtools.m", "sha256": "eda629fb5ff16fd7e48fc780ffba2af62cd63976cee6c2a7e8b8d1814a9d8db7", "language": "MATLAB", "lines": 66, "truncated": false, "block": 11, "row": 21230 }, { "path": "code/matlab/load_encoding_activations_allsubs.m", "sha256": "1df89cc363a468cc32e951f4451cbd4c9dd46388d6cacb97de7817021c4f3e00", "language": "MATLAB", "lines": 32, "truncated": false, "block": 11, "row": 18728 }, { "path": "code/matlab/load_fmri_data_for_pls_allsubs.m", "sha256": "b250bd659e880293a2b185bd40804d710da75dba5cedc1cdc28aca51fe5ce77c", "language": "MATLAB", "lines": 34, "truncated": false, "block": 11, "row": 18375 }, { "path": "code/matlab/mask_fmri_data_canlabtools.m", "sha256": "cb9bcc1aab6ecf7e565bf7a60bf1d722291a7d19a48a49e21c8e306a1416eddb", "language": "MATLAB", "lines": 42, "truncated": false, "block": 11, "row": 19360 }, { "path": "code/matlab/model_sc_pathways_controlled_task.m", "sha256": "bca765f8eaa9b951ecf63be9402dd0b0c3501ed91cca7594c58e07d7e0131076", "language": "MATLAB", "lines": 206, "truncated": false, "block": 12, "row": 717 }, { "path": "code/matlab/optimize_ga_trial_order.m", "sha256": "71748d58eb46c7c4fdf0a8460c3c89fdb3d78345b638cc34c34b6162a1097548", "language": "MATLAB", "lines": 281, "truncated": false, "block": 12, "row": 1616 }, { "path": "code/matlab/parcellate_avg_fmri_data_canlabtools.m", "sha256": "336c9b9aabfaff591d9553bc5ab8f07c01fb4d671a2bb8de43ec179cec1a1627", "language": "MATLAB", "lines": 71, "truncated": false, "block": 11, "row": 21765 }, { "path": "code/matlab/parcellate_betas_canlabtools.m", "sha256": "7a755f86c35ba819ce7e6af6125af6a174a41078dda4ef82236134277a3401b8", "language": "MATLAB", "lines": 69, "truncated": false, "block": 11, "row": 21640 }, { "path": "code/matlab/pred_pls_canlabtools.m", "sha256": "447e83cad0dfe58b1f2eeb765e4a1f935ffd7136069d8e176f05d3e67fc26bf3", "language": "MATLAB", "lines": 97, "truncated": false, "block": 11, "row": 22783 }, { "path": "code/matlab/preproc_fmri_data_canlabtools.m", "sha256": "b5ba2d70a74d827e1099c7a8470852d65acb24b0a914c386328941f6ba3f2ecd", "language": "MATLAB", "lines": 38, "truncated": false, "block": 11, "row": 19399 }, { "path": "code/matlab/rm_anova_selfreport_natvids.m", "sha256": "ae11081f809b8d1bb0e12d17281887ef05f7f91110faf0628166046ba54940b0", "language": "MATLAB", "lines": 60, "truncated": false, "block": 11, "row": 18547 }, { "path": "code/matlab/select_this_atlas_subset.m", "sha256": "328a9ecdfac21ae2d9839d7328ac03cc031f5f0591723ad96ee5d851230779dd", "language": "MATLAB", "lines": 47, "truncated": false, "block": 11, "row": 19634 }, { "path": "code/matlab/set_library_paths.m", "sha256": "0bea444b7e3592784c13f39221e3868345828dbe714b6412cd3c88e0aefceda2", "language": "MATLAB", "lines": 8, "truncated": false, "block": 11, "row": 15850 }, { "path": "code/matlab/smooth.m", "sha256": "e46bd05b6f44966348f94dedc713f6e0b57a63742ae07b09d45ba1e70b15e629", "language": "MATLAB", "lines": 24, "truncated": false, "block": 11, "row": 17495 }, { "path": "code/matlab/specify_estimate_level1.m", "sha256": "17f9048e6a6b8c5d0706799cc545ef82dc3530251b08f6e1fdee2be41ed9d65e", "language": "MATLAB", "lines": 104, "truncated": false, "block": 11, "row": 23037 }, { "path": "code/matlab/specify_estimate_level2.m", "sha256": "da8e308ed7a058ec33debdf0596c96f551d1bd7185faf9484e098307c033c2dc", "language": "MATLAB", "lines": 56, "truncated": false, "block": 11, "row": 21142 }, { "path": "code/matlab/voi.m", "sha256": "f7a5e23e78221501d113f3ea492980c3648178fe35d14f9743444af1edcbf8d3", "language": "MATLAB", "lines": 32, "truncated": false, "block": 11, "row": 18017 }, { "path": "code/python/calc_alexnet_activations.py", "sha256": "164491f2e518375d6ff9c169637b633e096dee46b860ff89e9ced155a44eb9c9", "language": "Python", "lines": 89, "truncated": false, "block": 12, "row": 9677 }, { "path": "code/python/calc_flynet_activations.py", "sha256": "fd3b682c035988ac8d9e0e8307205785d989a1c0b2b1900f4286746bb17bda92", "language": "Python", "lines": 147, "truncated": false, "block": 12, "row": 12707 }, { "path": "code/python/combine_downsample_recon_mesh.py", "sha256": "2919e022b00fa19a7f1a464151edd2194393535ecc776678bf09196d9e961e68", "language": "Python", "lines": 40, "truncated": false, "block": 12, "row": 6959 }, { "path": "code/python/get_imagenet_categories.py", "sha256": "d68fdd852d156992fa0951650fe6a39c36b3ac4dcc76a93fef9ea615c832e3b4", "language": "Python", "lines": 69, "truncated": false, "block": 12, "row": 8943 }, { "path": "code/python/get_video_metadata.py", "sha256": "90c96e13d5db5cc5a49d6d9c69a03f5611146a48724825b214e7fce30ca78053", "language": "Python", "lines": 72, "truncated": false, "block": 12, "row": 7969 }, { "path": "code/python/make_looming_video.py", "sha256": "7088fef5671ebe897d1275d3c7575c9fa2fc985daafc2b4b9e5704297c562bfa", "language": "Python", "lines": 309, "truncated": false, "block": 12, "row": 18149 }, { "path": "code/python/myutils/emonet_utils.py", "sha256": "8c3179dc147026b8727ea082851a9bbedf80a504b54a9e65f6b326ab7dab9b8c", "language": "Python", "lines": 204, "truncated": false, "block": 12, "row": 16139 }, { "path": "code/python/myutils/flynet_utils.py", "sha256": "0c54a8ae02662d349296c7384e2a4129972bf2261c4339f502477afa60e55bf1", "language": "Python", "lines": 159, "truncated": false, "block": 12, "row": 13887 }, { "path": "code/python/myutils/image_utils.py", "sha256": "1821788668733035cc9f44be28d7808492027b7b7596068640c444a1d0961fdf", "language": "Python", "lines": 83, "truncated": false, "block": 12, "row": 10168 }, { "path": "code/python/myutils/video_utils.py", "sha256": "200b144dca39fc2f82a30964ceb5b9caf1321478134a718cf0dc606fa95e79e5", "language": "Python", "lines": 152, "truncated": false, "block": 12, "row": 14436 }, { "path": "code/python/resample_video_fps.py", "sha256": "39a71d4211c3e26a51729616008db51c80857da4382bd3067ae157779d3c0d67", "language": "Python", "lines": 48, "truncated": false, "block": 12, "row": 6030 }, { "path": "code/shell/download_mesh.sh", "sha256": "ab45f0164707cc068d0f83b02e236b9a3b0b4f68260cabaab20509d7c4eeca3d", "language": "Shell", "lines": 8, "truncated": false, "block": 13, "row": 4502 }, { "path": "code/shell/get_fmri_data.sh", "sha256": "874f6f4eb30bcb74018cb5d4c531a5b62df52c14425e20f735be8e424c7b4c76", "language": "Shell", "lines": 8, "truncated": false, "block": 13, "row": 4706 }, { "path": "code/shell/init_project.sh", "sha256": "a216385ccd6459b0a4d21ad2264ed624f0863857c9a8a979719ddd767392a119", "language": "Shell", "lines": 38, "truncated": false, "block": 13, "row": 5162 }, { "path": "code/shell/monitor_fmriprep.sh", "sha256": "fd3c7a8cb5d1829231190eba5933201542dcf2876702421bce947794d80f08f1", "language": "Shell", "lines": 47, "truncated": false, "block": 13, "row": 5370 }, { "path": "code/shell/run_fmriprep.sh", "sha256": "930a83257e373d8b3262fd6871382e994d54a654786b0aea5d3775f7f5594ecf", "language": "Shell", "lines": 11, "truncated": false, "block": 13, "row": 4585 }, { "path": "code/shell/run_heudiconv.sh", "sha256": "7b4958e3325cb9bfd37ae1e41759a7dd151e0123eea4cb8692d0c71acd155abb", "language": "Shell", "lines": 20, "truncated": false, "block": 13, "row": 4844 }, { "path": "code/shell/sbatch_fmriprep.sh", "sha256": "0faaf38cd25779a688d3ae98aea76f02aef49306fde2ae0a4e8c494e8b83250f", "language": "Shell", "lines": 59, "truncated": false, "block": 13, "row": 5467 }, { "path": "code/shell/sbatch_reconall.sh", "sha256": "fad4be0ac07f6fd1b3fdba955ffd0063a31a3002a0b1f4fecaae0a9c7cfd6815", "language": "Shell", "lines": 32, "truncated": false, "block": 13, "row": 5176 }, { "path": "code/shell/slurm_targets.sh", "sha256": "1052e2110a26d6eaa32e99a7b986ffe46b4eb5a0082cf76c25e1c656c5055336", "language": "Shell", "lines": 17, "truncated": false, "block": 13, "row": 4775 }, { "path": "code/shell/upload_beh.sh", "sha256": "a16c4e43ae320b42b9f70a21425828334fecd8076f695a3003a3f96945a616aa", "language": "Shell", "lines": 11, "truncated": false, "block": 13, "row": 4671 }, { "path": "renv/activate.R", "sha256": "72b65f4dae2573cc846dda898a43b2dd6a4a71ab6b0a53dfb5632e34d58220c4", "language": "R", "lines": 1334, "truncated": false, "block": 13, "row": 3321 }, { "path": "run.r", "sha256": "800eea267a2db5460d35d392b31ea2a5829aff3e3b9d39e20d15247112531354", "language": "R", "lines": 47, "truncated": false, "block": 13, "row": 1360 } ] }