{
 "format": "oscr-script-manifest/1",
 "repository": "github.com/broadinstitute/picard",
 "url": "https://github.com/broadinstitute/picard",
 "host": "github.com",
 "commit": "c2a483d497d1b0fe6d0ab518b1b32fe98fad0741",
 "license": "MIT",
 "license_confirmed_by": "license file LICENSE.txt",
 "redistribution": "yes",
 "files": [
  {
   "path": "LICENSE.txt",
   "sha256": "c9eea75fadb411cd47b06afe1fb5834afbafc350fcb5583d924ac3ea54640ec2",
   "language": "License",
   "lines": 21,
   "truncated": false,
   "block": 22,
   "row": 14059
  },
  {
   "path": "README.md",
   "sha256": "e79379f4fedfa2f8dcb228b19cdddc4d184e0f4a7c4f4e526dbb6e1f1f71ef77",
   "language": "Text",
   "lines": 158,
   "truncated": false,
   "block": 24,
   "row": 794
  },
  {
   "path": "build_push_docker.sh",
   "sha256": "dd01e9ef452d7b7b21796ba208d4422f20516fbf114682bf313712cbdfa88dbc",
   "language": "Shell",
   "lines": 25,
   "truncated": false,
   "block": 23,
   "row": 17643
  },
  {
   "path": "src/main/java/picard/PicardException.java",
   "sha256": "ed6d312f65590672672aa82813370b078c3441d2d13b92582ac5f3a4832a4565",
   "language": "Java",
   "lines": 41,
   "truncated": false,
   "block": 22,
   "row": 10406
  },
  {
   "path": "src/main/java/picard/Test.java",
   "sha256": "1ee142ead1f80870f9cc62f706aaacec3a75cd5132078e1981b9a94aae8f2445",
   "language": "Java",
   "lines": 56,
   "truncated": false,
   "block": 22,
   "row": 10487
  },
  {
   "path": "src/main/java/picard/analysis/AbstractWgsMetricsCollector.java",
   "sha256": "07fde3bad1d2ca7ae35741e21d7f0a6592bc89d417375f6c0616c6d874d16d6e",
   "language": "Java",
   "lines": 221,
   "truncated": false,
   "block": 22,
   "row": 11565
  },
  {
   "path": "src/main/java/picard/analysis/AdapterUtility.java",
   "sha256": "1c0592109ead2de84d8673ccf28e2be087cdb904068bc51b2db196e80b7fa38a",
   "language": "Java",
   "lines": 159,
   "truncated": false,
   "block": 22,
   "row": 11372
  },
  {
   "path": "src/main/java/picard/analysis/AlignmentSummaryMetrics.java",
   "sha256": "d87e11bca53c888833f4a981d59ca97756241895e238bf6957a88691aa21bae9",
   "language": "Java",
   "lines": 235,
   "truncated": false,
   "block": 22,
   "row": 11557
  },
  {
   "path": "src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java",
   "sha256": "6e319b7d59321cfa8ca44a72d99c948cfd0836c9496f016eda72a7ab55e99cd9",
   "language": "Java",
   "lines": 500,
   "truncated": false,
   "block": 22,
   "row": 11877
  },
  {
   "path": "src/main/java/picard/analysis/BaseDistributionByCycleMetrics.java",
   "sha256": "29b81968070f0fb4699a5590dbe9ca4340f021d02313f43ed615746d81082c22",
   "language": "Java",
   "lines": 40,
   "truncated": false,
   "block": 22,
   "row": 10447
  },
  {
   "path": "src/main/java/picard/analysis/ChimeraUtil.java",
   "sha256": "cc7a8e8dcc73786e92af04a0f6db40231268d2a36a570fe2f1b1340042d920f6",
   "language": "Java",
   "lines": 80,
   "truncated": false,
   "block": 22,
   "row": 11095
  },
  {
   "path": "src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java",
   "sha256": "6ae13cdd97bbd073bc71fae51913b9fba2ea6cc426f00ba99bfba9ac9ea7005c",
   "language": "Java",
   "lines": 248,
   "truncated": false,
   "block": 22,
   "row": 11713
  },
  {
   "path": "src/main/java/picard/analysis/CollectBaseDistributionByCycle.java",
   "sha256": "68e4bc38a0c70ca764945db4442d2f735f18ffa21682ac0ae05678b678164524",
   "language": "Java",
   "lines": 259,
   "truncated": false,
   "block": 22,
   "row": 11691
  },
  {
   "path": "src/main/java/picard/analysis/CollectGcBiasMetrics.java",
   "sha256": "911f2dded1a8111af233dda67c94e807990a702d2003912b5bbd9b831fda6054",
   "language": "Java",
   "lines": 226,
   "truncated": false,
   "block": 22,
   "row": 11696
  },
  {
   "path": "src/main/java/picard/analysis/CollectInsertSizeMetrics.java",
   "sha256": "ac8099cc0d9cc1ff1fbaaa96269c8cfd5d9a05b7654887da9ea7a3b0b0b995bf",
   "language": "Java",
   "lines": 198,
   "truncated": false,
   "block": 22,
   "row": 11602
  },
  {
   "path": "src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java",
   "sha256": "0eafe452b3ae636b1bcf9358755129f1a64c4a404a7d3a176051400297aa535b",
   "language": "Java",
   "lines": 264,
   "truncated": false,
   "block": 22,
   "row": 11680
  },
  {
   "path": "src/main/java/picard/analysis/CollectMultipleMetrics.java",
   "sha256": "9a6a6dfb930e5ef779d232ce7b36d566272307cfba9130813225b6ed628d7a27",
   "language": "Java",
   "lines": 797,
   "truncated": false,
   "block": 22,
   "row": 11923
  },
  {
   "path": "src/main/java/picard/analysis/CollectOxoGMetrics.java",
   "sha256": "3b724c1056217216c0feab7f9c64c5f5f7add69ef5068558c7459ef5f2bef6d4",
   "language": "Java",
   "lines": 510,
   "truncated": false,
   "block": 22,
   "row": 11874
  },
  {
   "path": "src/main/java/picard/analysis/CollectQualityYieldMetrics.java",
   "sha256": "c876f47645fe072f4f417e83508b62a5392284e346060d32e030f6e938f6fdc8",
   "language": "Java",
   "lines": 314,
   "truncated": false,
   "block": 22,
   "row": 11694
  },
  {
   "path": "src/main/java/picard/analysis/CollectQualityYieldMetricsFlow.java",
   "sha256": "d51415fa318ded6bc16cb06b01cea61a98854b5959f8a1b30d074e4acab8e2e6",
   "language": "Java",
   "lines": 390,
   "truncated": false,
   "block": 22,
   "row": 11774
  },
  {
   "path": "src/main/java/picard/analysis/CollectQualityYieldMetricsSNVQ.java",
   "sha256": "ada676f03aeae1887c1683354b555b9ab6d413c32558266632c48429c2f23238",
   "language": "Java",
   "lines": 549,
   "truncated": false,
   "block": 22,
   "row": 11847
  },
  {
   "path": "src/main/java/picard/analysis/CollectRawWgsMetrics.java",
   "sha256": "73bedba5dbb186a359c7921f20ae19b2d9994b0c237040ca651eda4f79551317",
   "language": "Java",
   "lines": 174,
   "truncated": false,
   "block": 22,
   "row": 11586
  },
  {
   "path": "src/main/java/picard/analysis/CollectRnaSeqMetrics.java",
   "sha256": "f62faeea6af700ef77151189d79a3e342d48e866b21a82fd5fe637face63c9e3",
   "language": "Java",
   "lines": 219,
   "truncated": false,
   "block": 22,
   "row": 11660
  },
  {
   "path": "src/main/java/picard/analysis/CollectRrbsMetrics.java",
   "sha256": "326c4da40d0b01c2ee9846e74bfa9af1eea89b4a26ff6499caab92cf7e71016c",
   "language": "Java",
   "lines": 240,
   "truncated": false,
   "block": 22,
   "row": 11697
  },
  {
   "path": "src/main/java/picard/analysis/CollectUmiPrevalenceMetrics.java",
   "sha256": "762905fa4fdae1f36c87461a0d2ab8ea553a4452ec16dcd93fa18ccacef05bec",
   "language": "Java",
   "lines": 212,
   "truncated": false,
   "block": 22,
   "row": 11572
  },
  {
   "path": "src/main/java/picard/analysis/CollectWgsMetrics.java",
   "sha256": "708d10e487fbb6b4fe5c2d9e84fdac937b62a2823fe665665f2174a88764a348",
   "language": "Java",
   "lines": 448,
   "truncated": false,
   "block": 22,
   "row": 11867
  },
  {
   "path": "src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java",
   "sha256": "fddd407de103bc65f8815abe53d34eb7190f31af8993a0fe15bc959d895348cd",
   "language": "Java",
   "lines": 273,
   "truncated": false,
   "block": 22,
   "row": 11722
  },
  {
   "path": "src/main/java/picard/analysis/CompareMetrics.java",
   "sha256": "f9a0cc6187697d3b9decf5cfd668cfab77aeeb094b1763a24475b077bf6fa474",
   "language": "Java",
   "lines": 437,
   "truncated": false,
   "block": 22,
   "row": 11836
  },
  {
   "path": "src/main/java/picard/analysis/CounterManager.java",
   "sha256": "cff6944a0f5683571c26033988742c7c6eb6ac4457decd5f7f3f86c30a71cdc9",
   "language": "Java",
   "lines": 194,
   "truncated": false,
   "block": 22,
   "row": 11397
  },
  {
   "path": "src/main/java/picard/analysis/FastWgsMetricsCollector.java",
   "sha256": "f1f495bc2f785a29bb29983534f6f786966930e8af6bb0c7bd11ba72ec4b98f8",
   "language": "Java",
   "lines": 195,
   "truncated": false,
   "block": 22,
   "row": 11540
  },
  {
   "path": "src/main/java/picard/analysis/FingerprintingDetailMetrics.java",
   "sha256": "9d0905c7cc544b3b6a1a3d70a855de8c9baf3b2cd7207de3bb7510964f8bbf18",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10769
  },
  {
   "path": "src/main/java/picard/analysis/FingerprintingSummaryMetrics.java",
   "sha256": "cc66840c8e2b29928a1eccc19240639f5d96852155f537eaea5040ae3aedb315",
   "language": "Java",
   "lines": 82,
   "truncated": false,
   "block": 22,
   "row": 10952
  },
  {
   "path": "src/main/java/picard/analysis/GcBiasDetailMetrics.java",
   "sha256": "93b82a0a188b5b4a9fd8af3c55171a88dbdf6617e5b7c1e2ac700ca258a2a42b",
   "language": "Java",
   "lines": 69,
   "truncated": false,
   "block": 22,
   "row": 10812
  },
  {
   "path": "src/main/java/picard/analysis/GcBiasMetricsCollector.java",
   "sha256": "5c5347ec10a5b24a086ff54ae30106e266a1768bf45bab78ccba8bc13dcdc3d6",
   "language": "Java",
   "lines": 412,
   "truncated": false,
   "block": 22,
   "row": 11829
  },
  {
   "path": "src/main/java/picard/analysis/GcBiasSummaryMetrics.java",
   "sha256": "0e0dd60e2758529cbdf1e0a3c0b1a02837fa7d3252f45b6d51d7a135bad4d4c5",
   "language": "Java",
   "lines": 84,
   "truncated": false,
   "block": 22,
   "row": 10855
  },
  {
   "path": "src/main/java/picard/analysis/GcBiasUtils.java",
   "sha256": "a48f915b0ee43db76941c744a283b6676631ec238e0c0331dd97546b608a374a",
   "language": "Java",
   "lines": 122,
   "truncated": false,
   "block": 22,
   "row": 11232
  },
  {
   "path": "src/main/java/picard/analysis/HistogramGenerator.java",
   "sha256": "c4705ac443d3c9f9b22c1d0750d9aafd6168bf5da2128b398562ecdf0612f71d",
   "language": "Java",
   "lines": 231,
   "truncated": false,
   "block": 22,
   "row": 11579
  },
  {
   "path": "src/main/java/picard/analysis/InsertSizeMetrics.java",
   "sha256": "98a0cdf08e8dd6642d27693840e5df149fcd6cbbd87464b951cf6abb290c6c72",
   "language": "Java",
   "lines": 102,
   "truncated": false,
   "block": 22,
   "row": 11197
  },
  {
   "path": "src/main/java/picard/analysis/JumpingLibraryMetrics.java",
   "sha256": "8f7fcbae4f90c664d9fb3a8e98c35bc17c29f24b58d5075a502ec77891522e8c",
   "language": "Java",
   "lines": 128,
   "truncated": false,
   "block": 22,
   "row": 11065
  },
  {
   "path": "src/main/java/picard/analysis/MeanQualityByCycle.java",
   "sha256": "ae275a01642b434178157af7b6fdb040b9e7f188fe03f5045ab05390dd085384",
   "language": "Java",
   "lines": 161,
   "truncated": false,
   "block": 22,
   "row": 11402
  },
  {
   "path": "src/main/java/picard/analysis/MergeableMetricBase.java",
   "sha256": "2d977afcbc5cdd38e24131743374c819d0c8e828b020c240ed63966ad9fa04e3",
   "language": "Java",
   "lines": 271,
   "truncated": false,
   "block": 22,
   "row": 11739
  },
  {
   "path": "src/main/java/picard/analysis/MetricAccumulationLevel.java",
   "sha256": "c8bbc1c43cb05518c89d6a852387c0755a140a8110afe2226cba40469e3e5a06",
   "language": "Java",
   "lines": 32,
   "truncated": false,
   "block": 22,
   "row": 10358
  },
  {
   "path": "src/main/java/picard/analysis/QualityScoreDistribution.java",
   "sha256": "fcfeace2220703e068fd2db03bb4a250d6d0269959c28e4971ae574243fe019c",
   "language": "Java",
   "lines": 183,
   "truncated": false,
   "block": 22,
   "row": 11480
  },
  {
   "path": "src/main/java/picard/analysis/RnaSeqMetrics.java",
   "sha256": "3af062ceae895fe3bc99d50c0b78d29e016f7d50c3f7b9087a601046464d0eb7",
   "language": "Java",
   "lines": 148,
   "truncated": false,
   "block": 22,
   "row": 11422
  },
  {
   "path": "src/main/java/picard/analysis/RrbsCpgDetailMetrics.java",
   "sha256": "ba703bae79b8632ec2a82bf1c5ad933e4fcbead420cd78e35d74061b8f541112",
   "language": "Java",
   "lines": 47,
   "truncated": false,
   "block": 22,
   "row": 10564
  },
  {
   "path": "src/main/java/picard/analysis/RrbsMetrics.java",
   "sha256": "c0fc851eecd39dde3786f1782641964d9f13f91aaeba8170958740107e2ebae7",
   "language": "Java",
   "lines": 59,
   "truncated": false,
   "block": 22,
   "row": 10665
  },
  {
   "path": "src/main/java/picard/analysis/RrbsMetricsCollector.java",
   "sha256": "3b0f8605981c0399d7206dcd8c96faf4d7af634a8bf887f0d377767e48054659",
   "language": "Java",
   "lines": 311,
   "truncated": false,
   "block": 22,
   "row": 11686
  },
  {
   "path": "src/main/java/picard/analysis/RrbsSummaryMetrics.java",
   "sha256": "bdb38814c869c8b25489371832cb334a4b06bb6f46acb09d1a627fc1d3d126d2",
   "language": "Java",
   "lines": 62,
   "truncated": false,
   "block": 22,
   "row": 10732
  },
  {
   "path": "src/main/java/picard/analysis/SinglePassSamProgram.java",
   "sha256": "8a4d44caf815991ac38fba8becfc7ab27535da8ab91f8654244f9f6f7a112dc4",
   "language": "Java",
   "lines": 200,
   "truncated": false,
   "block": 22,
   "row": 11472
  },
  {
   "path": "src/main/java/picard/analysis/TheoreticalSensitivity.java",
   "sha256": "7002b998c2595a4ac4e51c8159e54f01e87fa34b79c07f5877a415904a571548",
   "language": "Java",
   "lines": 408,
   "truncated": false,
   "block": 22,
   "row": 11853
  },
  {
   "path": "src/main/java/picard/analysis/TheoreticalSensitivityMetrics.java",
   "sha256": "dda8dc88e5d7a73c7cf8ef8322a3ee16271474792692c5a5ba00747424a7a0eb",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10701
  },
  {
   "path": "src/main/java/picard/analysis/WgsMetrics.java",
   "sha256": "ad731ae23fbd29beade46ca7a28840e8670c9fba4fb51b297231927402fa5068",
   "language": "Java",
   "lines": 343,
   "truncated": false,
   "block": 22,
   "row": 11823
  },
  {
   "path": "src/main/java/picard/analysis/WgsMetricsProcessor.java",
   "sha256": "d878e2691a9adf48bfe64dc8992d8cce7619f69a6f801d6b1504c043b1d31cfd",
   "language": "Java",
   "lines": 59,
   "truncated": false,
   "block": 22,
   "row": 10671
  },
  {
   "path": "src/main/java/picard/analysis/WgsMetricsProcessorImpl.java",
   "sha256": "1c4f271631378eec5e08cc384c2b0631aee5a80a7702442d87e432b719c01635",
   "language": "Java",
   "lines": 121,
   "truncated": false,
   "block": 22,
   "row": 11166
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/ArtifactCounter.java",
   "sha256": "ac0100e8c3edd565169a84f4ee6c07bd60e23be28e82ce19bbece5a2fa6cbd64",
   "language": "Java",
   "lines": 228,
   "truncated": false,
   "block": 22,
   "row": 11688
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/CollectSequencingArtifactMetrics.java",
   "sha256": "d57675f765885317c02d58fd86e6ec8f2dc84fe6f11c5cf3db1c9ffbc582c851",
   "language": "Java",
   "lines": 381,
   "truncated": false,
   "block": 22,
   "row": 11835
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/ContextAccumulator.java",
   "sha256": "56cbef927e0861a304fa460d1091737412696d025e41280c7986797cd5fce5f9",
   "language": "Java",
   "lines": 194,
   "truncated": false,
   "block": 22,
   "row": 11624
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/ConvertSequencingArtifactToOxoG.java",
   "sha256": "e6a491ca26fadb355b49b05817f468edf9a06c64a194b93fa141d825a2188662",
   "language": "Java",
   "lines": 242,
   "truncated": false,
   "block": 22,
   "row": 11703
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/ErrorSummaryMetrics.java",
   "sha256": "c2c16bf62774a84276d60a3b91dbca4b3d65c11cfb2c952240e84a15457ee85a",
   "language": "Java",
   "lines": 39,
   "truncated": false,
   "block": 22,
   "row": 10399
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/SequencingArtifactMetrics.java",
   "sha256": "3f489b795a9380fa65b185c59c57c04c011cf5036b7ee6b3c5fcd37994596a6a",
   "language": "Java",
   "lines": 305,
   "truncated": false,
   "block": 22,
   "row": 11735
  },
  {
   "path": "src/main/java/picard/analysis/artifacts/Transition.java",
   "sha256": "2f956a2b17d5c94f27f97f99d06f216275a5510ff9af3b8565c6a58c3e93a80a",
   "language": "Java",
   "lines": 99,
   "truncated": false,
   "block": 22,
   "row": 10848
  },
  {
   "path": "src/main/java/picard/analysis/directed/CollectHsMetrics.java",
   "sha256": "3a28f4f810911424d8613242f464c2709a0f29c1a32b9cc4be83e7897a87cdff",
   "language": "Java",
   "lines": 176,
   "truncated": false,
   "block": 22,
   "row": 11559
  },
  {
   "path": "src/main/java/picard/analysis/directed/CollectTargetedMetrics.java",
   "sha256": "b1e8b555c1112938be547a53b0e43552d31b7415830693feb9093764d2d67b30",
   "language": "Java",
   "lines": 211,
   "truncated": false,
   "block": 22,
   "row": 11604
  },
  {
   "path": "src/main/java/picard/analysis/directed/CollectTargetedPcrMetrics.java",
   "sha256": "de30cc5a626ba333d490eef2bc378aed7c71da47cb4f40589b41e3c6849299c9",
   "language": "Java",
   "lines": 115,
   "truncated": false,
   "block": 22,
   "row": 11370
  },
  {
   "path": "src/main/java/picard/analysis/directed/HsMetricCollector.java",
   "sha256": "5d34656559e32e10ee991c67c2eb07ee147fbcfd9b9c8983178066ad64fcae78",
   "language": "Java",
   "lines": 157,
   "truncated": false,
   "block": 22,
   "row": 11515
  },
  {
   "path": "src/main/java/picard/analysis/directed/HsMetrics.java",
   "sha256": "7e47973fc3d32d6bc91b0c0d9d3f5d03696c01cfb1460eb39ec9012f69e08370",
   "language": "Java",
   "lines": 140,
   "truncated": false,
   "block": 22,
   "row": 11403
  },
  {
   "path": "src/main/java/picard/analysis/directed/InsertSizeMetricsCollector.java",
   "sha256": "8996fb309fa641494db30b971367b59bc719e04040eae60152fcbdcf82be5b98",
   "language": "Java",
   "lines": 234,
   "truncated": false,
   "block": 22,
   "row": 11674
  },
  {
   "path": "src/main/java/picard/analysis/directed/PanelMetricsBase.java",
   "sha256": "48e2bb06199b4eeee93b2920a2c6339c9a1c107332a3bd3ec4cd092f1404ad1e",
   "language": "Java",
   "lines": 174,
   "truncated": false,
   "block": 22,
   "row": 11457
  },
  {
   "path": "src/main/java/picard/analysis/directed/RnaSeqMetricsCollector.java",
   "sha256": "936dd3fb348a6628395e0bf70402a1e1ebf49055d2ee53412bcc0fc44ad91d90",
   "language": "Java",
   "lines": 517,
   "truncated": false,
   "block": 22,
   "row": 11891
  },
  {
   "path": "src/main/java/picard/analysis/directed/TargetMetrics.java",
   "sha256": "065de8b6c3a6692a34b0da604888ab0ee09f4e2fcfdabce9ac56cdd62edb5e90",
   "language": "Java",
   "lines": 72,
   "truncated": false,
   "block": 22,
   "row": 10891
  },
  {
   "path": "src/main/java/picard/analysis/directed/TargetMetricsBase.java",
   "sha256": "d24eaa515247d129ef9952d9ff57557392c885953d6ef76fae491987d76bc950",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10547
  },
  {
   "path": "src/main/java/picard/analysis/directed/TargetMetricsCollector.java",
   "sha256": "38c5e2a29c70a7dcb095b282d4e708de83a24e43e60b4ef0a3fa8d3e992c1553",
   "language": "Java",
   "lines": 1016,
   "truncated": false,
   "block": 22,
   "row": 11937
  },
  {
   "path": "src/main/java/picard/analysis/directed/TargetedPcrMetrics.java",
   "sha256": "00ab39d70a952de5a46c601f6f56b96027d9b32cb11029b22110db7ef99ce5d6",
   "language": "Java",
   "lines": 71,
   "truncated": false,
   "block": 22,
   "row": 10838
  },
  {
   "path": "src/main/java/picard/analysis/directed/TargetedPcrMetricsCollector.java",
   "sha256": "904f0444f1eeeecdaf2efebf9dd68b2b00726242cab2b162bada4813eb259aff",
   "language": "Java",
   "lines": 91,
   "truncated": false,
   "block": 22,
   "row": 11210
  },
  {
   "path": "src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java",
   "sha256": "b5e9fa36d528e3d2390c280c2dfac83850f2c685dad15ffdd7d2a4f0ee3328b1",
   "language": "Java",
   "lines": 613,
   "truncated": false,
   "block": 22,
   "row": 11892
  },
  {
   "path": "src/main/java/picard/analysis/replicates/IndependentReplicateMetric.java",
   "sha256": "e9ecdddb6ceb8e7bc6f9de0364d4cbea45c12e00c76ec5435886182ebe452677",
   "language": "Java",
   "lines": 334,
   "truncated": false,
   "block": 22,
   "row": 11670
  },
  {
   "path": "src/main/java/picard/annotation/AnnotationException.java",
   "sha256": "3db2908169e2b128bc04e80c7b64c0ae3b42347ac5d1a12e697530d1743c9098",
   "language": "Java",
   "lines": 40,
   "truncated": false,
   "block": 22,
   "row": 10450
  },
  {
   "path": "src/main/java/picard/annotation/Gene.java",
   "sha256": "d674fe53cddd2d425e4febfe03979dc4e74302c70e2a870d2114a428ff8483bb",
   "language": "Java",
   "lines": 238,
   "truncated": false,
   "block": 22,
   "row": 11537
  },
  {
   "path": "src/main/java/picard/annotation/GeneAnnotationReader.java",
   "sha256": "eae2a2055e62ff2141312a1a67b32f41776e1f791d2df3867b75bfa9c05672c4",
   "language": "Java",
   "lines": 39,
   "truncated": false,
   "block": 22,
   "row": 10436
  },
  {
   "path": "src/main/java/picard/annotation/LocusFunction.java",
   "sha256": "cab2776f43433dfb96e41128c9cfc042031c3ea3abce3c20371f071a80706b33",
   "language": "Java",
   "lines": 33,
   "truncated": false,
   "block": 22,
   "row": 10389
  },
  {
   "path": "src/main/java/picard/annotation/RefFlatReader.java",
   "sha256": "8172d27103976b45bdccdbbb81faa732a9627f20e5cc1bb3714b64d731554abd",
   "language": "Java",
   "lines": 191,
   "truncated": false,
   "block": 22,
   "row": 11562
  },
  {
   "path": "src/main/java/picard/annotation/SortGff.java",
   "sha256": "bf57c4e326b18208a751a583e49b78f3b83a6097cd0b108949e4fe8933cedd74",
   "language": "Java",
   "lines": 273,
   "truncated": false,
   "block": 22,
   "row": 11656
  },
  {
   "path": "src/main/java/picard/arrays/ArraysCallingMetricAccumulator.java",
   "sha256": "25ec8a2f3ffa9d9616725aa71deab1f0a3aab0278807d88d3c8587808b41f7a4",
   "language": "Java",
   "lines": 224,
   "truncated": false,
   "block": 22,
   "row": 11662
  },
  {
   "path": "src/main/java/picard/arrays/BafRegressMetrics.java",
   "sha256": "8d6cd8a952c4e0ec4ab7d2c546049c9d02993709b5a86d1bc6b2d0e302f081a9",
   "language": "Java",
   "lines": 57,
   "truncated": false,
   "block": 22,
   "row": 10595
  },
  {
   "path": "src/main/java/picard/arrays/CollectArraysVariantCallingMetrics.java",
   "sha256": "259615ef6d716213c9023c770024fbd943e27fe4a608d9425a679bc14946ebb0",
   "language": "Java",
   "lines": 497,
   "truncated": false,
   "block": 22,
   "row": 11800
  },
  {
   "path": "src/main/java/picard/arrays/CombineGenotypingArrayVcfs.java",
   "sha256": "b200be739d70262af3a18f0cdded9f1bddf8bc1679be8db71e7eb2da4469b64a",
   "language": "Java",
   "lines": 284,
   "truncated": false,
   "block": 22,
   "row": 11720
  },
  {
   "path": "src/main/java/picard/arrays/CreateBafRegressMetricsFile.java",
   "sha256": "1febf0d58bf1fb72cae6cf9accc6d781bf0a4daddec5c39a335607c969f7caf5",
   "language": "Java",
   "lines": 114,
   "truncated": false,
   "block": 22,
   "row": 11203
  },
  {
   "path": "src/main/java/picard/arrays/CreateVerifyIDIntensityContaminationMetricsFile.java",
   "sha256": "8c45228a913a7efb31a43a01eadf88fd9eeee20e4de5523d9f146eb9ba45455b",
   "language": "Java",
   "lines": 118,
   "truncated": false,
   "block": 22,
   "row": 11249
  },
  {
   "path": "src/main/java/picard/arrays/GtcToVcf.java",
   "sha256": "a01553cdc03308f55ee9e68e8f674ef6b3220ac7fe2a40474dde970dabf08d91",
   "language": "Java",
   "lines": 649,
   "truncated": false,
   "block": 22,
   "row": 11916
  },
  {
   "path": "src/main/java/picard/arrays/MergePedIntoVcf.java",
   "sha256": "2d96c4875dbeaf6501f923c3c46fb2d407693723681f296b90bd5177e8cc0b0f",
   "language": "Java",
   "lines": 264,
   "truncated": false,
   "block": 22,
   "row": 11712
  },
  {
   "path": "src/main/java/picard/arrays/VcfToAdpc.java",
   "sha256": "8749cbe842a528c756c0146b548e8018ca9e055e1476f6b60f8c86cd0cc47402",
   "language": "Java",
   "lines": 247,
   "truncated": false,
   "block": 22,
   "row": 11684
  },
  {
   "path": "src/main/java/picard/arrays/VerifyIDIntensityContaminationMetrics.java",
   "sha256": "ecbf1ae526356a47b4f4783f86761f9199f71ba7c3d9a391b2bf89a8fef963a4",
   "language": "Java",
   "lines": 20,
   "truncated": false,
   "block": 22,
   "row": 10086
  },
  {
   "path": "src/main/java/picard/arrays/ZCallPedFile.java",
   "sha256": "8de3f5fea56820f36d3c7a09b356556de33158dc4d088412255647ec57d5bc77",
   "language": "Java",
   "lines": 106,
   "truncated": false,
   "block": 22,
   "row": 11126
  },
  {
   "path": "src/main/java/picard/arrays/illumina/ArraysControlInfo.java",
   "sha256": "261b4903d7179bd0dbd4b6fd24ab3b69603af019da8b3c8bc9421a1b6e0edc7f",
   "language": "Java",
   "lines": 94,
   "truncated": false,
   "block": 22,
   "row": 10983
  },
  {
   "path": "src/main/java/picard/arrays/illumina/BpmToNormalizationManifestCsv.java",
   "sha256": "fe47766a1fe6775fcc71343b36699f46588d335eabcf3809b4be4ed31fb9a84b",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 11100
  },
  {
   "path": "src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifest.java",
   "sha256": "b5d71adfd7d563825bd4516c08debcdb0bc6e3fa5b7163f93ab45841392b1593",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11229
  },
  {
   "path": "src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecord.java",
   "sha256": "0cfda03acd407e66ce070c5cf04b32501cdef6ae4c59466fabdfbc5615b5d7a1",
   "language": "Java",
   "lines": 245,
   "truncated": false,
   "block": 22,
   "row": 11429
  },
  {
   "path": "src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecordCreator.java",
   "sha256": "255f7b0e1ffa7fe26cf2e216a7c9b4a6d1760ad3fd169299cc4188f3927119dd",
   "language": "Java",
   "lines": 528,
   "truncated": false,
   "block": 22,
   "row": 11897
  },
  {
   "path": "src/main/java/picard/arrays/illumina/CompareGtcFiles.java",
   "sha256": "59d10a78256cc38b7b5fa42fcb39ab16e672b7711a48c1e082f54b3498827a8e",
   "language": "Java",
   "lines": 233,
   "truncated": false,
   "block": 22,
   "row": 11593
  },
  {
   "path": "src/main/java/picard/arrays/illumina/CreateExtendedIlluminaManifest.java",
   "sha256": "909ccb2fe7d7a211f236008d22177e118218f4be8707a50d241febbf7e1819b7",
   "language": "Java",
   "lines": 728,
   "truncated": false,
   "block": 22,
   "row": 11919
  },
  {
   "path": "src/main/java/picard/arrays/illumina/IlluminaAdpcFileWriter.java",
   "sha256": "14b4cd97c7b6a6052121a2dd3a402fed2606bb26704a88f376ae2c44beec2187",
   "language": "Java",
   "lines": 116,
   "truncated": false,
   "block": 22,
   "row": 11114
  },
  {
   "path": "src/main/java/picard/arrays/illumina/IlluminaBPMFile.java",
   "sha256": "85cc77dd2b185bc840d4104dca93b969069bb024c5e4bc867af8b28cd6b07888",
   "language": "Java",
   "lines": 206,
   "truncated": false,
   "block": 22,
   "row": 11469
  },
  {
   "path": "src/main/java/picard/arrays/illumina/IlluminaBPMLocusEntry.java",
   "sha256": "408d0e8f2fe07034058da4d636f22885353b8a774273b1c03f47db630c223141",
   "language": "Java",
   "lines": 234,
   "truncated": false,
   "block": 22,
   "row": 11118
  },
  {
   "path": "src/main/java/picard/arrays/illumina/IlluminaGenotype.java",
   "sha256": "3d2f090196c29ce910395d5ebf0374f847d09152072611fef91cc9a2eafbabf6",
   "language": "Java",
   "lines": 38,
   "truncated": false,
   "block": 22,
   "row": 10337
  },
  {
   "path": "src/main/java/picard/arrays/illumina/IlluminaManifest.java",
   "sha256": "dcb375e34d465288b1f926b6f0217a6d8ccf1921521502f8ff29196a4b60a0e4",
   "language": "Java",
   "lines": 358,
   "truncated": false,
   "block": 22,
   "row": 11728
  },
  {
   "path": "src/main/java/picard/arrays/illumina/IlluminaManifestRecord.java",
   "sha256": "12c4ddb69743fbcf24b8725b0cbbe61d81a118aed3bcbd560de825caade7b16a",
   "language": "Java",
   "lines": 375,
   "truncated": false,
   "block": 22,
   "row": 11708
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumDataFile.java",
   "sha256": "6fff320d7d2da780becdbf1847b291646f4424ea742c051edc73521055dea0fc",
   "language": "Java",
   "lines": 397,
   "truncated": false,
   "block": 22,
   "row": 11738
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumEGTFile.java",
   "sha256": "b2911bd050cc748349761ebfcacc7d5814b38af8b6f751670f736972e6cbd55a",
   "language": "Java",
   "lines": 177,
   "truncated": false,
   "block": 22,
   "row": 11252
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumFileTOC.java",
   "sha256": "4d2c70c687997dc63ab59ebcb056fd66fddf7657107a220a749c57ff5b514a2b",
   "language": "Java",
   "lines": 49,
   "truncated": false,
   "block": 22,
   "row": 10461
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumGTCFile.java",
   "sha256": "c03b98c83e39efe8de7bbb5b366ded500f939314a12b2c8a9ac2d7e7dc48416b",
   "language": "Java",
   "lines": 732,
   "truncated": false,
   "block": 22,
   "row": 11871
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumGTCRecord.java",
   "sha256": "fb9f3e545514590172e54020d54371d3740381f783e848af8cd0033a2a017fad",
   "language": "Java",
   "lines": 45,
   "truncated": false,
   "block": 22,
   "row": 10539
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumNormalizationManifest.java",
   "sha256": "b731a080dd4265bd762a6486019ab38dd4570008c71892cd628cf99bbc7665f0",
   "language": "Java",
   "lines": 123,
   "truncated": false,
   "block": 22,
   "row": 11116
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumTransformation.java",
   "sha256": "b7d8f0935c9aed0773e1fbec5b3bf309acca398e3764872c0a9f2f67782298ab",
   "language": "Java",
   "lines": 146,
   "truncated": false,
   "block": 22,
   "row": 10911
  },
  {
   "path": "src/main/java/picard/arrays/illumina/InfiniumVcfFields.java",
   "sha256": "fff6f13a3ff7b578c224a25aaab799d608e82c061d1895890db081c9ff4b2492",
   "language": "Java",
   "lines": 180,
   "truncated": false,
   "block": 22,
   "row": 11512
  },
  {
   "path": "src/main/java/picard/cmdline/CommandLineDefaults.java",
   "sha256": "6085f904b90207f9107b36a5dda870d7e1bf0ee9003155c0f91ff0fa3a19d58e",
   "language": "Java",
   "lines": 48,
   "truncated": false,
   "block": 22,
   "row": 10526
  },
  {
   "path": "src/main/java/picard/cmdline/CommandLineProgram.java",
   "sha256": "e8062363b340c9666d8413bbb642943181b32870ce6816edb08d93a8f8af8595",
   "language": "Java",
   "lines": 522,
   "truncated": false,
   "block": 22,
   "row": 11875
  },
  {
   "path": "src/main/java/picard/cmdline/CommandLineSyntaxTranslater.java",
   "sha256": "4f1e9b7b391d05f5718acc9a939b8c1e8477a903c9afd2637ea9c81c50d24e47",
   "language": "Java",
   "lines": 67,
   "truncated": false,
   "block": 22,
   "row": 10958
  },
  {
   "path": "src/main/java/picard/cmdline/PicardCommandLine.java",
   "sha256": "dcadcbd11083fd2917201e393cb62977f80b6e55781c3b86446737f119b8cf30",
   "language": "Java",
   "lines": 352,
   "truncated": false,
   "block": 22,
   "row": 11788
  },
  {
   "path": "src/main/java/picard/cmdline/StandardOptionDefinitions.java",
   "sha256": "35430cbad73362aed562227a682511844490704bf296307a716d50369c051a75",
   "language": "Java",
   "lines": 50,
   "truncated": false,
   "block": 22,
   "row": 10725
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/EmptyOutputArgumentCollection.java",
   "sha256": "afa1defb3b0b45b8877711c28425d9489f47ff48ff6b7cd03d60a72811e94980",
   "language": "Java",
   "lines": 34,
   "truncated": false,
   "block": 22,
   "row": 10336
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/IntervalArgumentCollection.java",
   "sha256": "8e9b59e2391a0392ff46c5b36db9f0a7a6fbf5e6a54023c5368cb1df8b8fc19e",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10372
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/OptionalReferenceArgumentCollection.java",
   "sha256": "32c92f906a366f3a06317dbb301c30140f12f76df7250b6c1eaf8d26a82c30ab",
   "language": "Java",
   "lines": 57,
   "truncated": false,
   "block": 22,
   "row": 10657
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/OutputArgumentCollection.java",
   "sha256": "8fd909111adc5f996f3173a2bf9702669f46a993ed366d52aa255e1c1f4a1f9d",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10367
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/ReferenceArgumentCollection.java",
   "sha256": "ce69990356affb79944b68f51d7282639173e7e1155da1d734c1bdd6e93eab37",
   "language": "Java",
   "lines": 92,
   "truncated": false,
   "block": 22,
   "row": 11096
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/RequiredOutputArgumentCollection.java",
   "sha256": "cfde43dd97602e60456c6fad6a100319ce835e94654f3b9a0958cd08844351d1",
   "language": "Java",
   "lines": 47,
   "truncated": false,
   "block": 22,
   "row": 10498
  },
  {
   "path": "src/main/java/picard/cmdline/argumentcollections/RequiredReferenceArgumentCollection.java",
   "sha256": "539fd87e4d138061a1225b6f749dbfb580c737496d32467361e655d128c0356b",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10607
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/BaseCallingProgramGroup.java",
   "sha256": "d32799309e225c2343f159f2d0fe085bc960d12f7b57d31c0ce83442d594d10e",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10053
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/DiagnosticsAndQCProgramGroup.java",
   "sha256": "a49c4068b632d20a711964ccc3fdd66b98a15d5226d96ba084d49c28667330ac",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10031
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/GenotypingArraysProgramGroup.java",
   "sha256": "004c5db80ccd0b7cd888a2b0bc43e9d192968eb10493d3f53a9c65d47a488e47",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10038
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/IntervalsManipulationProgramGroup.java",
   "sha256": "4d95a747eb87e62280cecdc685593d0d36ea91b14247994b05a46ce7f685c16f",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10044
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/OtherProgramGroup.java",
   "sha256": "b6bc445373bedc66268a33a1593d7738a3b30a8442423a2081b52796063cd7f1",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10011
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/ReadDataManipulationProgramGroup.java",
   "sha256": "739b2dd22daaa11f091a108ef8f0204f477f2188ba55a0338a4b2c8f25fc4364",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10030
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/ReferenceProgramGroup.java",
   "sha256": "f75477f5989fc1b20b1fa325da36decad818c37e74827eb54462114d6faaa5ec",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10015
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/Testing.java",
   "sha256": "f49da6ec475ca5fb4ef44ba7691d450b87c3f2ea6d0a57435410455b90cfd520",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 9999
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/VariantEvaluationProgramGroup.java",
   "sha256": "699052e6d4d56b41abf6eb346e4e7177aeb55d7b5ea56c59086d60f336864d58",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10059
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/VariantFilteringProgramGroup.java",
   "sha256": "f13877b3860a9e61aeb707d897ec2ac1bed562a9d20d3593b3b4c668a523ebbe",
   "language": "Java",
   "lines": 17,
   "truncated": false,
   "block": 22,
   "row": 10014
  },
  {
   "path": "src/main/java/picard/cmdline/programgroups/VariantManipulationProgramGroup.java",
   "sha256": "76e01788399ce86dce1182ff06ff4d2aaae15e63183f3b912fbe08af98c2d8a3",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10025
  },
  {
   "path": "src/main/java/picard/fastq/BamToBfq.java",
   "sha256": "9841ebd8b8f5905da60d5bf12a2d622473de17c362f28652e3fa4234c7aca45b",
   "language": "Java",
   "lines": 149,
   "truncated": false,
   "block": 22,
   "row": 11336
  },
  {
   "path": "src/main/java/picard/fastq/BamToBfqWriter.java",
   "sha256": "ec1595e848a99631caa5d470ad501babb343ffffe2aba0e20618012a774a21c5",
   "language": "Java",
   "lines": 17,
   "truncated": false,
   "block": 22,
   "row": 10172
  },
  {
   "path": "src/main/java/picard/fastq/Casava18ReadNameEncoder.java",
   "sha256": "09dc127552ef9373fe53bc47c58adf7eb1122859113930c6bd0cf40db647b396",
   "language": "Java",
   "lines": 82,
   "truncated": false,
   "block": 22,
   "row": 10847
  },
  {
   "path": "src/main/java/picard/fastq/IlluminaReadNameEncoder.java",
   "sha256": "483aafa63fec3442615f67d47ff626af82be2d370ca4ff23f6e82921225df234",
   "language": "Java",
   "lines": 35,
   "truncated": false,
   "block": 22,
   "row": 10288
  },
  {
   "path": "src/main/java/picard/fastq/ReadNameEncoder.java",
   "sha256": "5775f051c9bd7b4e34946c99e524735ffc13002136781fc3aeb923a90ebb33d4",
   "language": "Java",
   "lines": 26,
   "truncated": false,
   "block": 22,
   "row": 10163
  },
  {
   "path": "src/main/java/picard/fastq/SamToBfqWriter.java",
   "sha256": "5b269ccbb9d4906af1287c055f61ed8665f5aaf5b88285eb7da34ce70504f1fd",
   "language": "Java",
   "lines": 444,
   "truncated": false,
   "block": 22,
   "row": 11805
  },
  {
   "path": "src/main/java/picard/filter/CountingAdapterFilter.java",
   "sha256": "219eeb35cc929bb37122ecfb92b692c8d2509371c7767c5adc0afab5e5cddaa4",
   "language": "Java",
   "lines": 41,
   "truncated": false,
   "block": 22,
   "row": 10466
  },
  {
   "path": "src/main/java/picard/filter/CountingDuplicateFilter.java",
   "sha256": "fefa67277f09562cc81a2025a0f9453035ae0be7a3107ed06b6ecaf30ad78868",
   "language": "Java",
   "lines": 33,
   "truncated": false,
   "block": 22,
   "row": 10374
  },
  {
   "path": "src/main/java/picard/filter/CountingFilter.java",
   "sha256": "b77368279387e9c21a150ac822711f753b777957bc6bc937e50c131f9771f2e6",
   "language": "Java",
   "lines": 67,
   "truncated": false,
   "block": 22,
   "row": 10740
  },
  {
   "path": "src/main/java/picard/filter/CountingFilterWrapper.java",
   "sha256": "631c07ecbbd2f93da6d84ae1883a8dedea539cc85a3d980fb956dde5c3d8d735",
   "language": "Java",
   "lines": 19,
   "truncated": false,
   "block": 22,
   "row": 10061
  },
  {
   "path": "src/main/java/picard/filter/CountingMapQFilter.java",
   "sha256": "81d0b67b72878189865dbf050a2ad3bf51b00482802140a2ffe8e380a9ac8e64",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10413
  },
  {
   "path": "src/main/java/picard/filter/CountingPairedFilter.java",
   "sha256": "d03f6797d481f99df3f68b4b2002cc5db20ac0b0717b0b62f5a132624ad7db6a",
   "language": "Java",
   "lines": 33,
   "truncated": false,
   "block": 22,
   "row": 10394
  },
  {
   "path": "src/main/java/picard/fingerprint/CalculateFingerprintMetrics.java",
   "sha256": "1bbb5a0457e7587c93a1cd809d1454fcf40624d36cbae149221e37e00e896eb1",
   "language": "Java",
   "lines": 240,
   "truncated": false,
   "block": 22,
   "row": 11692
  },
  {
   "path": "src/main/java/picard/fingerprint/CappedHaplotypeProbabilities.java",
   "sha256": "b73d8c347eac534b849bf9452d1456e26d92809f0333e29a289aaa0ec2532973",
   "language": "Java",
   "lines": 46,
   "truncated": false,
   "block": 22,
   "row": 10580
  },
  {
   "path": "src/main/java/picard/fingerprint/CheckFingerprint.java",
   "sha256": "7cfa06bf9522725834db27df383b47c96662d9e7f625fabfc734abeb13c85d58",
   "language": "Java",
   "lines": 434,
   "truncated": false,
   "block": 22,
   "row": 11872
  },
  {
   "path": "src/main/java/picard/fingerprint/ClusterCrosscheckMetrics.java",
   "sha256": "af62a60d8c5a3acc1103a9c27810b0a25812320d065f620792ba241d09fbe313",
   "language": "Java",
   "lines": 188,
   "truncated": false,
   "block": 22,
   "row": 11576
  },
  {
   "path": "src/main/java/picard/fingerprint/ClusteredCrosscheckMetric.java",
   "sha256": "a065947931a371327fb5e9b99549ea18f0e0d3b0e9cb9e7072864e343bfa8403",
   "language": "Java",
   "lines": 58,
   "truncated": false,
   "block": 22,
   "row": 10618
  },
  {
   "path": "src/main/java/picard/fingerprint/ConvertHaplotypeDatabaseToVcf.java",
   "sha256": "c766b037df5abdb7b457fdfa915bc1ade112ab0644a93eb4ce9ef12ae2a3eb18",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10524
  },
  {
   "path": "src/main/java/picard/fingerprint/CrosscheckFingerprints.java",
   "sha256": "bd6c0449ea9e66a4fd883fe46da4903dc9b1e07d45e58ed742a42456160e17bc",
   "language": "Java",
   "lines": 1081,
   "truncated": false,
   "block": 22,
   "row": 11945
  },
  {
   "path": "src/main/java/picard/fingerprint/CrosscheckMetric.java",
   "sha256": "521d8a38b1ee0ed65233d09d2b4d1941034c30ddc1c30be37d76b66d8468c625",
   "language": "Java",
   "lines": 112,
   "truncated": false,
   "block": 22,
   "row": 11021
  },
  {
   "path": "src/main/java/picard/fingerprint/CrosscheckReadGroupFingerprints.java",
   "sha256": "3423f6a45b4a30b1f15f5db8457f89a6149a38ec64ebcf9f18ac461e38161198",
   "language": "Java",
   "lines": 115,
   "truncated": false,
   "block": 22,
   "row": 11165
  },
  {
   "path": "src/main/java/picard/fingerprint/DiploidGenotype.java",
   "sha256": "8aed25db7cda5310262d8a583d66f0e9613e0df08fed43a9f8b21517cc2bf6a7",
   "language": "Java",
   "lines": 109,
   "truncated": false,
   "block": 22,
   "row": 11044
  },
  {
   "path": "src/main/java/picard/fingerprint/DiploidHaplotype.java",
   "sha256": "3277eeb0693d7592d3cb223ccea2e4db9f5ddaf5dabe1bac4ac50a6cb1bbd827",
   "language": "Java",
   "lines": 35,
   "truncated": false,
   "block": 22,
   "row": 10347
  },
  {
   "path": "src/main/java/picard/fingerprint/ExtractFingerprint.java",
   "sha256": "23c805d94eb01bc8972af7df1bc0960088d4239c95c52b130a2fafeb28d8a6ec",
   "language": "Java",
   "lines": 158,
   "truncated": false,
   "block": 22,
   "row": 11399
  },
  {
   "path": "src/main/java/picard/fingerprint/Fingerprint.java",
   "sha256": "6858b280dd031cd5426b23225b8109429178f8fe01d3108610268b460424c81c",
   "language": "Java",
   "lines": 179,
   "truncated": false,
   "block": 22,
   "row": 11443
  },
  {
   "path": "src/main/java/picard/fingerprint/FingerprintChecker.java",
   "sha256": "f0297a3c7696bbbc0f8ea9cebc46119628d49267562c10f15baa2b0fb292c536",
   "language": "Java",
   "lines": 979,
   "truncated": false,
   "block": 22,
   "row": 11934
  },
  {
   "path": "src/main/java/picard/fingerprint/FingerprintIdDetails.java",
   "sha256": "4dbce9d5fb9c29bec74414c0d646e5ab16a905c80ed2ac49c7d7bc8ec0da4491",
   "language": "Java",
   "lines": 146,
   "truncated": false,
   "block": 22,
   "row": 11286
  },
  {
   "path": "src/main/java/picard/fingerprint/FingerprintMetrics.java",
   "sha256": "09bf71bbe746abca98e5ae7ef3aa3f3ed85a9a69526e3b35dfc065271ddb8744",
   "language": "Java",
   "lines": 122,
   "truncated": false,
   "block": 22,
   "row": 11230
  },
  {
   "path": "src/main/java/picard/fingerprint/FingerprintResults.java",
   "sha256": "ac640a118cd86fd2f61c1690a73473c93b3c0a27eec994305583e757e55603d0",
   "language": "Java",
   "lines": 59,
   "truncated": false,
   "block": 22,
   "row": 10648
  },
  {
   "path": "src/main/java/picard/fingerprint/FingerprintUtils.java",
   "sha256": "40b3863af8973fe2949b640e406ec14da9ff70f235fbffb48fa513254fa2423c",
   "language": "Java",
   "lines": 236,
   "truncated": false,
   "block": 22,
   "row": 11635
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeBlock.java",
   "sha256": "56fbd6a156e61db89f583d750b820984b49eae3b20b00bc769364e1e9197bd17",
   "language": "Java",
   "lines": 175,
   "truncated": false,
   "block": 22,
   "row": 11338
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeMap.java",
   "sha256": "0a327db57cbf67630f9d957c43fd5e4af896d5deb03fcfefee4b928c3bafc9fb",
   "language": "Java",
   "lines": 610,
   "truncated": false,
   "block": 22,
   "row": 11883
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilities.java",
   "sha256": "f2f193683893fd013767dc9d956ea00543880412b9d03ff47f9a9949997c420b",
   "language": "Java",
   "lines": 281,
   "truncated": false,
   "block": 22,
   "row": 11598
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromContaminatorSequence.java",
   "sha256": "5bba2b24cb53720c6765bd8adce01f688c5e17535ea7a73874fc51ed5fc32679",
   "language": "Java",
   "lines": 157,
   "truncated": false,
   "block": 22,
   "row": 11363
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromGenotype.java",
   "sha256": "5b9044912c1df423552eaee089a12c8d033154838339c15e15c20e90c452b4d9",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10854
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromGenotypeLikelihoods.java",
   "sha256": "e4826b214859cb688f5eccd7bb55d0f0fb727a2c850ebacec57eef8cf5683a56",
   "language": "Java",
   "lines": 103,
   "truncated": false,
   "block": 22,
   "row": 11109
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilitiesFromSequence.java",
   "sha256": "4cc6ea9a07ef3db9d26baed9dfc6ade55ef6dfc934a6976a4def44be07aa3773",
   "language": "Java",
   "lines": 142,
   "truncated": false,
   "block": 22,
   "row": 11255
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilitiesUsingLogLikelihoods.java",
   "sha256": "af5acfc3c3c2bdac4fc2475015cef5630d3fba11dd100e4b1c15ad3f5fadaf0a",
   "language": "Java",
   "lines": 217,
   "truncated": false,
   "block": 22,
   "row": 11500
  },
  {
   "path": "src/main/java/picard/fingerprint/HaplotypeProbabilityOfNormalGivenTumor.java",
   "sha256": "31bb9f5ad418cb3e673e3b1e722d915e015ed74692d134cc9c14f81e1c50585b",
   "language": "Java",
   "lines": 138,
   "truncated": false,
   "block": 22,
   "row": 11226
  },
  {
   "path": "src/main/java/picard/fingerprint/IdentifyContaminant.java",
   "sha256": "911e24ee8a184f1193e19f04b16de6e2e31a8684db593b68b76a131a04e8295b",
   "language": "Java",
   "lines": 104,
   "truncated": false,
   "block": 22,
   "row": 11158
  },
  {
   "path": "src/main/java/picard/fingerprint/LiftOverHaplotypeMap.java",
   "sha256": "7d792f4a84b137774f6afc30bf5615fa7d43e3bd1de2a7719079c76d7a55e679",
   "language": "Java",
   "lines": 112,
   "truncated": false,
   "block": 22,
   "row": 11142
  },
  {
   "path": "src/main/java/picard/fingerprint/LocusResult.java",
   "sha256": "70addeeac4665123e045f2779d7400e7b7d4035185d48077db29687ee0260c79",
   "language": "Java",
   "lines": 77,
   "truncated": false,
   "block": 22,
   "row": 10967
  },
  {
   "path": "src/main/java/picard/fingerprint/MatchResults.java",
   "sha256": "ec99b32ab1b3a93f12f89d6faa4bc37f65a7b1535e76387faecebb4b6a7b06a0",
   "language": "Java",
   "lines": 94,
   "truncated": false,
   "block": 22,
   "row": 10941
  },
  {
   "path": "src/main/java/picard/fingerprint/Snp.java",
   "sha256": "34dd7753b12cbc3f389fe2d2732141c2be40b991f186ab5c9cee6022f24d05c5",
   "language": "Java",
   "lines": 143,
   "truncated": false,
   "block": 22,
   "row": 11183
  },
  {
   "path": "src/main/java/picard/flow/FlowBasedArgumentCollection.java",
   "sha256": "ab83764aeb9fd517a33c95b2e6404e67d71f73f4e14711ff804284bea560f5c1",
   "language": "Java",
   "lines": 25,
   "truncated": false,
   "block": 22,
   "row": 10228
  },
  {
   "path": "src/main/java/picard/flow/FlowBasedKeyCodec.java",
   "sha256": "ee257a3cc55d7a03229de0455942784790d276194485fdb1de05234127488d57",
   "language": "Java",
   "lines": 227,
   "truncated": false,
   "block": 22,
   "row": 11513
  },
  {
   "path": "src/main/java/picard/flow/FlowBasedRead.java",
   "sha256": "856885c466453d05aea6ae4f1bcaf8c08f250be334d64c5819743fe6675b1baa",
   "language": "Java",
   "lines": 322,
   "truncated": false,
   "block": 22,
   "row": 11664
  },
  {
   "path": "src/main/java/picard/flow/FlowReadGroupInfo.java",
   "sha256": "6b6d5a2618408d29c4c616cad9eb6b5d7f70fc05b9dd383dbdebb823967b4089",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10335
  },
  {
   "path": "src/main/java/picard/illumina/BarcodeExtractor.java",
   "sha256": "1a21ec7b23a55278418fcde43ac9acedd10d594ad8bb166497c0e08f5cf8f04c",
   "language": "Java",
   "lines": 331,
   "truncated": false,
   "block": 22,
   "row": 11723
  },
  {
   "path": "src/main/java/picard/illumina/BarcodeMetric.java",
   "sha256": "5437a2fb16c5f0b322b9f10ab7f0d6c8da2d83bf096a636e1bc9305549df9977",
   "language": "Java",
   "lines": 134,
   "truncated": false,
   "block": 22,
   "row": 11201
  },
  {
   "path": "src/main/java/picard/illumina/BasecallsConverter.java",
   "sha256": "00c3fb1f2aa429fb92ae51d1dfb212e27ccaa0db82baa9db7b50dad18788875f",
   "language": "Java",
   "lines": 330,
   "truncated": false,
   "block": 22,
   "row": 11762
  },
  {
   "path": "src/main/java/picard/illumina/BasecallsConverterBuilder.java",
   "sha256": "41c5336d68b751447c24326a667d095d74b8bb0439d1e3266ceb765eae64fe45",
   "language": "Java",
   "lines": 230,
   "truncated": false,
   "block": 22,
   "row": 11632
  },
  {
   "path": "src/main/java/picard/illumina/CheckIlluminaDirectory.java",
   "sha256": "e68d3dbefed4733eaab446d427451832f83acead28cf7ff145ac3003f3fa6d6e",
   "language": "Java",
   "lines": 365,
   "truncated": false,
   "block": 22,
   "row": 11809
  },
  {
   "path": "src/main/java/picard/illumina/ClusterDataToSamConverter.java",
   "sha256": "921f244157e3cdada4cfb83884494bbc2abbc269ebe24e6f8bdf1c1146bbd8d0",
   "language": "Java",
   "lines": 331,
   "truncated": false,
   "block": 22,
   "row": 11749
  },
  {
   "path": "src/main/java/picard/illumina/CollectIlluminaBasecallingMetrics.java",
   "sha256": "da73cfc89744a93d49811c0b9316d297781070c823e50815aba973cf6d6e15e1",
   "language": "Java",
   "lines": 321,
   "truncated": false,
   "block": 22,
   "row": 11783
  },
  {
   "path": "src/main/java/picard/illumina/CollectIlluminaLaneMetrics.java",
   "sha256": "0a756b5239c0dff40651cf20947ab0307bf2c618172c49f8070324f1e663ce3a",
   "language": "Java",
   "lines": 232,
   "truncated": false,
   "block": 22,
   "row": 11719
  },
  {
   "path": "src/main/java/picard/illumina/CustomAdapterPair.java",
   "sha256": "9a3cb5269c14fbc0d14dd1cbaf5d416ef248d0d4e6241da2547fbc00de39bd66",
   "language": "Java",
   "lines": 63,
   "truncated": false,
   "block": 22,
   "row": 10716
  },
  {
   "path": "src/main/java/picard/illumina/DistanceMetric.java",
   "sha256": "926c8f2f34534b3cf7b47d112c38577adc950cc62b16a8b8a97c3565cfe67eab",
   "language": "Java",
   "lines": 82,
   "truncated": false,
   "block": 22,
   "row": 10943
  },
  {
   "path": "src/main/java/picard/illumina/ExtractBarcodesProgram.java",
   "sha256": "2ea19ba4609d54bd5101e6af82b9938b2100bf3c5caa8af2a8e42168f088423a",
   "language": "Java",
   "lines": 321,
   "truncated": false,
   "block": 22,
   "row": 11761
  },
  {
   "path": "src/main/java/picard/illumina/ExtractIlluminaBarcodes.java",
   "sha256": "a226e962589902ee4712821c1ac41303a1752e924864d92d330fb0a5c6e5866c",
   "language": "Java",
   "lines": 396,
   "truncated": false,
   "block": 22,
   "row": 11839
  },
  {
   "path": "src/main/java/picard/illumina/IlluminaBasecallingMetrics.java",
   "sha256": "1c6b52c90f6a5e7d2051184e63a6e2f674964ef340585b665c9cb6b41f01f21f",
   "language": "Java",
   "lines": 87,
   "truncated": false,
   "block": 22,
   "row": 11011
  },
  {
   "path": "src/main/java/picard/illumina/IlluminaBasecallsToFastq.java",
   "sha256": "8a48c627938abc8c1c9f2aa9cf43c35c79f4c905dacf0a16654092068209edde",
   "language": "Java",
   "lines": 757,
   "truncated": false,
   "block": 22,
   "row": 11913
  },
  {
   "path": "src/main/java/picard/illumina/IlluminaBasecallsToSam.java",
   "sha256": "28fef28534b39c75e724b4d5df156c3898a7d9bc2ee168ec8fedb2586ab04457",
   "language": "Java",
   "lines": 708,
   "truncated": false,
   "block": 22,
   "row": 11914
  },
  {
   "path": "src/main/java/picard/illumina/IlluminaLaneMetrics.java",
   "sha256": "35f42fe25420686c4716241afe8f05482a00a798eb1fd5a426da80f8a2155d32",
   "language": "Java",
   "lines": 27,
   "truncated": false,
   "block": 22,
   "row": 10185
  },
  {
   "path": "src/main/java/picard/illumina/IlluminaPhasingMetrics.java",
   "sha256": "240184246b7d98e3b03a270a9131f23e8128b0c44ce9f39196b18c21be9bc1ba",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 11004
  },
  {
   "path": "src/main/java/picard/illumina/LanePhasingMetricsCollector.java",
   "sha256": "b3257036516ea423dd6515927d311149ce662aa50429d785235e82836ddb1dcb",
   "language": "Java",
   "lines": 90,
   "truncated": false,
   "block": 22,
   "row": 11034
  },
  {
   "path": "src/main/java/picard/illumina/MarkIlluminaAdapters.java",
   "sha256": "335905a63b979c38f9dd4ed0e79f60ab23baa9a9f182e643e3aefcbd38b9a47d",
   "language": "Java",
   "lines": 257,
   "truncated": false,
   "block": 22,
   "row": 11667
  },
  {
   "path": "src/main/java/picard/illumina/SortedBasecallsConverter.java",
   "sha256": "f63c4448f9e7b99a51f46b278cfc668b03fd7fda4f0638a1a709d671638f3186",
   "language": "Java",
   "lines": 270,
   "truncated": false,
   "block": 22,
   "row": 11730
  },
  {
   "path": "src/main/java/picard/illumina/UnsortedBasecallsConverter.java",
   "sha256": "ffd7c53e63b0e77b7e1b5f082e28f1031a1bc67e0c36ac1bb960b2956bc921fe",
   "language": "Java",
   "lines": 186,
   "truncated": false,
   "block": 22,
   "row": 11560
  },
  {
   "path": "src/main/java/picard/illumina/parser/BarcodeParser.java",
   "sha256": "f3aaa58c52228598d006d3f733ac3ef6e45c2846566042c2a03e0e6045d49ad5",
   "language": "Java",
   "lines": 84,
   "truncated": false,
   "block": 22,
   "row": 10757
  },
  {
   "path": "src/main/java/picard/illumina/parser/BaseIlluminaDataProvider.java",
   "sha256": "1d4625db518319ecc837c99e90886fae128d2e3d1bbfd8dc0ca474adfc81de77",
   "language": "Java",
   "lines": 92,
   "truncated": false,
   "block": 22,
   "row": 10898
  },
  {
   "path": "src/main/java/picard/illumina/parser/BclData.java",
   "sha256": "70a8dc856b2f8006b0238386df73fb075b813e8bce37bc69255dd0ed48a50727",
   "language": "Java",
   "lines": 30,
   "truncated": false,
   "block": 22,
   "row": 10188
  },
  {
   "path": "src/main/java/picard/illumina/parser/BclParser.java",
   "sha256": "d0d5bf67f22757326adc7e279254c3b6f2e8ba347e4040fc4de90a50c52f282c",
   "language": "Java",
   "lines": 295,
   "truncated": false,
   "block": 22,
   "row": 11701
  },
  {
   "path": "src/main/java/picard/illumina/parser/CbclData.java",
   "sha256": "6eaaaee2f144da7056e4116a4f22ede9d14b34ed0946eeb72678be6a057a96ab",
   "language": "Java",
   "lines": 45,
   "truncated": false,
   "block": 22,
   "row": 10273
  },
  {
   "path": "src/main/java/picard/illumina/parser/ClusterData.java",
   "sha256": "fdc09f7f8d2fa6df4cb037c41385190b096cd180917e27415b04d5d402dc44cb",
   "language": "Java",
   "lines": 200,
   "truncated": false,
   "block": 22,
   "row": 11261
  },
  {
   "path": "src/main/java/picard/illumina/parser/CycleIlluminaFileMap.java",
   "sha256": "147f4a2f88e9cfe38591fb64fb72b71b68d86755ca36fd7a37018010d427a11f",
   "language": "Java",
   "lines": 74,
   "truncated": false,
   "block": 22,
   "row": 10865
  },
  {
   "path": "src/main/java/picard/illumina/parser/FilterParser.java",
   "sha256": "76b42d2e9a43e2b7c5724a4a4c8d598801058b7ca51b791416cc98f1194efb23",
   "language": "Java",
   "lines": 83,
   "truncated": false,
   "block": 22,
   "row": 10818
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaData.java",
   "sha256": "3b64cd8aa424c8e7391c64aa18754b31e64bbb7345ea12acb1f29ea0f5638de9",
   "language": "Java",
   "lines": 61,
   "truncated": false,
   "block": 22,
   "row": 10663
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaDataProvider.java",
   "sha256": "8c7b12b9e40353e1cd756c49f7f2f505ffb4dfb5f080c9b0683d56d6d9538ede",
   "language": "Java",
   "lines": 175,
   "truncated": false,
   "block": 22,
   "row": 11362
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaDataProviderFactory.java",
   "sha256": "5d413af5ea8aec9c0b35382e855febcfd88d6ed9673aa229eed0c427fd6d8423",
   "language": "Java",
   "lines": 405,
   "truncated": false,
   "block": 22,
   "row": 11843
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaDataType.java",
   "sha256": "853f04010862ba701ab6ec0994c40e846a0c1b0933600f55f0ddd9b0c5d1d2ee",
   "language": "Java",
   "lines": 35,
   "truncated": false,
   "block": 22,
   "row": 10402
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaFileMap.java",
   "sha256": "ece0ae22a74eb657a490b0019ed0157d82cf8bac0cb81ce17833e893f556fbb4",
   "language": "Java",
   "lines": 58,
   "truncated": false,
   "block": 22,
   "row": 10668
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaFileNotFoundException.java",
   "sha256": "757d8cb15ff938379fec87a70e35199bd43b7931096b1e1904e124aa9ebc092f",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10455
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaFileUtil.java",
   "sha256": "009472a62815648c824627d3d4922525c3fd3159c5f36519f6d684d31fc1bb2a",
   "language": "Java",
   "lines": 306,
   "truncated": false,
   "block": 22,
   "row": 11717
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaMetricsCode.java",
   "sha256": "f0d5609600cc3e89b76be9d01421c0223c63d333b016cd1cd67d699bb14a201b",
   "language": "Java",
   "lines": 42,
   "truncated": false,
   "block": 22,
   "row": 10395
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaParser.java",
   "sha256": "efb99ac3eaced012f9ecf148e2d088514b092f46e8ddec4f484baa6acd350221",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10768
  },
  {
   "path": "src/main/java/picard/illumina/parser/IlluminaTextIterator.java",
   "sha256": "c9c65fef847f82d2779c6e6081bc99601b0fc7806012cc9ef218ccd12510f719",
   "language": "Java",
   "lines": 121,
   "truncated": false,
   "block": 22,
   "row": 11012
  },
  {
   "path": "src/main/java/picard/illumina/parser/IntensityChannel.java",
   "sha256": "2de7f2428fa736d3307efbf127ad70aab21f65b10186de6888393c10ae104f2c",
   "language": "Java",
   "lines": 38,
   "truncated": false,
   "block": 22,
   "row": 10415
  },
  {
   "path": "src/main/java/picard/illumina/parser/MultiTileBclFileUtil.java",
   "sha256": "3562175be67e9bf67a2565010e668b4f700e5ad10e0cbb8fb13d083622297c66",
   "language": "Java",
   "lines": 126,
   "truncated": false,
   "block": 22,
   "row": 11189
  },
  {
   "path": "src/main/java/picard/illumina/parser/MultiTileBclParser.java",
   "sha256": "e104ad2880f88b94256d3a5ffc36ca356c23ce9a51a1894cdae426d00346dabc",
   "language": "Java",
   "lines": 176,
   "truncated": false,
   "block": 22,
   "row": 11327
  },
  {
   "path": "src/main/java/picard/illumina/parser/MultiTileFileUtil.java",
   "sha256": "085ad95f303674acdf057f5fa9783cd5861a409165b7598f1d08bcd538b3fcd5",
   "language": "Java",
   "lines": 120,
   "truncated": false,
   "block": 22,
   "row": 11112
  },
  {
   "path": "src/main/java/picard/illumina/parser/MultiTileFilterParser.java",
   "sha256": "fd4976ed0778fdb62c41789f69015a2aa93d2e33a88f7e5977144de95f73850f",
   "language": "Java",
   "lines": 64,
   "truncated": false,
   "block": 22,
   "row": 10649
  },
  {
   "path": "src/main/java/picard/illumina/parser/MultiTileLocsParser.java",
   "sha256": "d843e7126339b7dbbb52976999edea3aa08cf46280a750f061b577b514d061be",
   "language": "Java",
   "lines": 82,
   "truncated": false,
   "block": 22,
   "row": 10791
  },
  {
   "path": "src/main/java/picard/illumina/parser/MultiTileParser.java",
   "sha256": "8256297a384f70500129be22a9540b336701e61ba22adfb4c031927da1e14579",
   "language": "Java",
   "lines": 128,
   "truncated": false,
   "block": 22,
   "row": 11213
  },
  {
   "path": "src/main/java/picard/illumina/parser/NewIlluminaDataProvider.java",
   "sha256": "eb91f9b21dcffc8b8b1782e90c38cf8a38bb86f8eaf7547a3d930b4b3bab2c92",
   "language": "Java",
   "lines": 151,
   "truncated": false,
   "block": 22,
   "row": 11279
  },
  {
   "path": "src/main/java/picard/illumina/parser/OutputMapping.java",
   "sha256": "66eb0355ebbfe4cde1fa2b30c9c5edb756917fc8d05a803ba41ee3f3f1475fda",
   "language": "Java",
   "lines": 183,
   "truncated": false,
   "block": 22,
   "row": 11488
  },
  {
   "path": "src/main/java/picard/illumina/parser/ParameterizedFileUtil.java",
   "sha256": "dab083a2ffc95d31be3bcc84d97651133e1059489320d32256be2083f8c07253",
   "language": "Java",
   "lines": 214,
   "truncated": false,
   "block": 22,
   "row": 11462
  },
  {
   "path": "src/main/java/picard/illumina/parser/PerTileCycleParser.java",
   "sha256": "e46a3ac21579e6a2001bb2aab380665d7d991691f5308eb9894380717d14cc56",
   "language": "Java",
   "lines": 202,
   "truncated": false,
   "block": 22,
   "row": 11453
  },
  {
   "path": "src/main/java/picard/illumina/parser/PerTileFileUtil.java",
   "sha256": "c122fd8446b6eac5c6157928e496c7e62cf63a2b401a9ec308e7ce86d7aac419",
   "language": "Java",
   "lines": 86,
   "truncated": false,
   "block": 22,
   "row": 10815
  },
  {
   "path": "src/main/java/picard/illumina/parser/PerTileOrPerRunFileUtil.java",
   "sha256": "7049bd6bd6eed91c12b181ae4fd69d3d20e4191c28c8171ef0286ad1ae8eedcd",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10348
  },
  {
   "path": "src/main/java/picard/illumina/parser/PerTileParser.java",
   "sha256": "75359f2505c06d9959cbbbf53478617ff2d822255506d560fd071f5a50173b73",
   "language": "Java",
   "lines": 142,
   "truncated": false,
   "block": 22,
   "row": 11204
  },
  {
   "path": "src/main/java/picard/illumina/parser/PerTilePerCycleFileUtil.java",
   "sha256": "e4b180f930d6f46f12edc8a0619344f9e0ca91c0d74c27fecbb2d2f2da6d98ea",
   "language": "Java",
   "lines": 267,
   "truncated": false,
   "block": 22,
   "row": 11637
  },
  {
   "path": "src/main/java/picard/illumina/parser/PosParser.java",
   "sha256": "1a7e031c9e19df89324c2196d5b95d39fe9b7b4211e94dae976fdecdf9639354",
   "language": "Java",
   "lines": 133,
   "truncated": false,
   "block": 22,
   "row": 11184
  },
  {
   "path": "src/main/java/picard/illumina/parser/Range.java",
   "sha256": "ec17cc81ec5de87a869a053b674744e4f8ce1a5a51a3f7d37a3699f295c0fc72",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10638
  },
  {
   "path": "src/main/java/picard/illumina/parser/ReadData.java",
   "sha256": "f227521f3aab43f197ad13e8b219d8cd9a08595a1ca747d70731ad2e442549b9",
   "language": "Java",
   "lines": 72,
   "truncated": false,
   "block": 22,
   "row": 10617
  },
  {
   "path": "src/main/java/picard/illumina/parser/ReadDescriptor.java",
   "sha256": "f217422bcd55f62799705e12cddce6ca29497172572888073967dbe3f145fe64",
   "language": "Java",
   "lines": 57,
   "truncated": false,
   "block": 22,
   "row": 10582
  },
  {
   "path": "src/main/java/picard/illumina/parser/ReadStructure.java",
   "sha256": "d1263bb9e02271e6a7c68c81b1b5d4ecd0c1a4d995ad9062e4f75b1865866f17",
   "language": "Java",
   "lines": 367,
   "truncated": false,
   "block": 22,
   "row": 11777
  },
  {
   "path": "src/main/java/picard/illumina/parser/ReadType.java",
   "sha256": "d145afce9336eb8b70535c4f612731b5dcde86127f70c566e294dc733a0eaa11",
   "language": "Java",
   "lines": 40,
   "truncated": false,
   "block": 22,
   "row": 10510
  },
  {
   "path": "src/main/java/picard/illumina/parser/Tile.java",
   "sha256": "d2747f7951a86a49d69a35246a4d646adf0f44a97904af1df2e6339aefd56a92",
   "language": "Java",
   "lines": 116,
   "truncated": false,
   "block": 22,
   "row": 11130
  },
  {
   "path": "src/main/java/picard/illumina/parser/TileIndex.java",
   "sha256": "091f98bf9946724677a3a402ed50bfe13dfe4accfc9eafafc99bca57c96d5a6c",
   "language": "Java",
   "lines": 170,
   "truncated": false,
   "block": 22,
   "row": 11345
  },
  {
   "path": "src/main/java/picard/illumina/parser/TileMetricsUtil.java",
   "sha256": "d49076bdba02eebd8f725ef4efa013a48cca03cccb203a58b85f5538d1071c20",
   "language": "Java",
   "lines": 406,
   "truncated": false,
   "block": 22,
   "row": 11850
  },
  {
   "path": "src/main/java/picard/illumina/parser/TilePhasingValue.java",
   "sha256": "1ef4d38781f6caa7f47c5bec15227ed5b2d046da4e81ff1d77953fdf8ec9a965",
   "language": "Java",
   "lines": 30,
   "truncated": false,
   "block": 22,
   "row": 10171
  },
  {
   "path": "src/main/java/picard/illumina/parser/TileTemplateRead.java",
   "sha256": "9bd664094e0c138cd687c62b8cb4120a630b58afa381175d850cfb51c986874b",
   "language": "Java",
   "lines": 32,
   "truncated": false,
   "block": 22,
   "row": 10317
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/BarcodeFileFaker.java",
   "sha256": "699e8b70c6c96097216d5539f6f602d5b947242d2b884faeec9f9164a982b6c0",
   "language": "Java",
   "lines": 25,
   "truncated": false,
   "block": 22,
   "row": 10057
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/BciFileFaker.java",
   "sha256": "1f9761fa5650650ea38907c639d4322cb1fcfc69e9201f405f862782dd8f1ff0",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10342
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/BclFileFaker.java",
   "sha256": "d32e56c97ce7383ffab342cf9c8a890497fcc855f808733e441c41e3ec654250",
   "language": "Java",
   "lines": 30,
   "truncated": false,
   "block": 22,
   "row": 10135
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/BclIndexFaker.java",
   "sha256": "59936a982e874d99db42ab30b74074d10fc6206672450596149aac902752b023",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10326
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/ClocsFileFaker.java",
   "sha256": "f3ef829c14f6dea476a5f7b736516f0603709479542deccfe0a593cacaab2b8e",
   "language": "Java",
   "lines": 25,
   "truncated": false,
   "block": 22,
   "row": 10067
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/FileFaker.java",
   "sha256": "37c26077f49fdb664da1348705edcca21e895538f92067654354ac1fec5e22ab",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 10734
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/FilterFileFaker.java",
   "sha256": "7066a79e1897e872fcb7538ed7fc29c10de6204ad7488f2e7c176d9d17c43322",
   "language": "Java",
   "lines": 34,
   "truncated": false,
   "block": 22,
   "row": 10251
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/LocsFileFaker.java",
   "sha256": "15efb63ece8aa1b97c8d62ebc786ef47de17e832246643ee04e319160fac8f7a",
   "language": "Java",
   "lines": 28,
   "truncated": false,
   "block": 22,
   "row": 10080
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/MultiTileBclFileFaker.java",
   "sha256": "2975122c8d43375a356213429e04cac8c328815b7ce562f2546f17ffff524373",
   "language": "Java",
   "lines": 66,
   "truncated": false,
   "block": 22,
   "row": 10563
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/MultiTileLocsFileFaker.java",
   "sha256": "7dbfc86ab88379e2ca219e2c0a8a1a21012d0cd6bc4333804c4d60fac377ff14",
   "language": "Java",
   "lines": 30,
   "truncated": false,
   "block": 22,
   "row": 10132
  },
  {
   "path": "src/main/java/picard/illumina/parser/fakers/PosFileFaker.java",
   "sha256": "70a64af0bb49a198b30b515c5f8e0e9b52019e10cf654cd1628109221b9e6f64",
   "language": "Java",
   "lines": 25,
   "truncated": false,
   "block": 22,
   "row": 10058
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/AbstractIlluminaPositionFileReader.java",
   "sha256": "8067c7c7cb32c4d91b3402c1eddfb4f67775ae8993d09d8f5ae13cc6a2e6ee2e",
   "language": "Java",
   "lines": 208,
   "truncated": false,
   "block": 22,
   "row": 11434
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/BarcodeFileReader.java",
   "sha256": "a2b00d8304e6534f5c44ad102007ede5f017dd37916f3cd32e948e125e2fa10f",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10427
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/BaseBclReader.java",
   "sha256": "1ebbd71d435340a357a97d661bd70c2c20119349f41d32c9b9395ec93ccd88a5",
   "language": "Java",
   "lines": 175,
   "truncated": false,
   "block": 22,
   "row": 11384
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/BclIndexReader.java",
   "sha256": "5b4869b1d1c622e47d7fac127591005075f534a5be20f5a449f29a9b9ede42cd",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10774
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/BclQualityEvaluationStrategy.java",
   "sha256": "d010efc346880588c804742592f17fba7288f715ffdd3b16b885e2169d5bba90",
   "language": "Java",
   "lines": 99,
   "truncated": false,
   "block": 22,
   "row": 11149
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/BclReader.java",
   "sha256": "404a3d09f7083c533bc224e1decf838be89be245e50880a32c909993d4582ab1",
   "language": "Java",
   "lines": 305,
   "truncated": false,
   "block": 22,
   "row": 11716
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/CbclReader.java",
   "sha256": "c659a16dd16d2ac08afb0843558c481f275733fd7371190d1dea92c1adc2118c",
   "language": "Java",
   "lines": 441,
   "truncated": false,
   "block": 22,
   "row": 11833
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/ClocsFileReader.java",
   "sha256": "3252f2bbb8171b601ce2c1e1372d6bcff99a3efe2ba981f4cc6062a296b3d50c",
   "language": "Java",
   "lines": 157,
   "truncated": false,
   "block": 22,
   "row": 11289
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/EmpiricalPhasingMetricsOutReader.java",
   "sha256": "1bd37cbae9b2b430183b1ebe6f69831ae21b22cac281ab0886071976030e8ca5",
   "language": "Java",
   "lines": 47,
   "truncated": false,
   "block": 22,
   "row": 10440
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/FilterFileReader.java",
   "sha256": "3d26c22bd5a8d1c8958a9d5fc410c662953dd31d6690303011a3e95cbde9ec3c",
   "language": "Java",
   "lines": 114,
   "truncated": false,
   "block": 22,
   "row": 11113
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/LocsFileReader.java",
   "sha256": "02f1a52cdf2904f4a1af09c69c81ff23fc1cfa52e34fa2e96bbe6b4bc1365bd4",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11091
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/MMapBackedIteratorFactory.java",
   "sha256": "114b5aad4244bf6d1aa4bfb5b5d36514740c3a61e817f619d99269f5a300dac1",
   "language": "Java",
   "lines": 298,
   "truncated": false,
   "block": 22,
   "row": 11634
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/PosFileReader.java",
   "sha256": "ad99735716f9dc92795a3800607bd644dfcde9a82fe00f698085e859fc56a23b",
   "language": "Java",
   "lines": 89,
   "truncated": false,
   "block": 22,
   "row": 10873
  },
  {
   "path": "src/main/java/picard/illumina/parser/readers/TileMetricsOutReader.java",
   "sha256": "850f2a629ffbfb233f29d865ca3ddc9d477d42522d4cfe02a908f33848023c5d",
   "language": "Java",
   "lines": 218,
   "truncated": false,
   "block": 22,
   "row": 11468
  },
  {
   "path": "src/main/java/picard/illumina/quality/CollectHiSeqXPfFailMetrics.java",
   "sha256": "b9152478d0050605ff07824152ed45c5ed7f900a64a965721096a240a3d08efe",
   "language": "Java",
   "lines": 566,
   "truncated": false,
   "block": 22,
   "row": 11887
  },
  {
   "path": "src/main/java/picard/metrics/GcBiasMetrics.java",
   "sha256": "ca3fc597b073aeff94fe33f1da1f5fa0a58e8cf91600ae5bcc7addf12e528db8",
   "language": "Java",
   "lines": 43,
   "truncated": false,
   "block": 22,
   "row": 10501
  },
  {
   "path": "src/main/java/picard/metrics/MultiLevelCollector.java",
   "sha256": "9107e4a1645f3e47d5e0b881e8960a9caaee5889303c35c192a6f196c473647f",
   "language": "Java",
   "lines": 341,
   "truncated": false,
   "block": 22,
   "row": 11771
  },
  {
   "path": "src/main/java/picard/metrics/MultilevelMetrics.java",
   "sha256": "48149b9734a54576d99e58453330930d40693e9a054416a45b568d09c1af2229",
   "language": "Java",
   "lines": 18,
   "truncated": false,
   "block": 22,
   "row": 10092
  },
  {
   "path": "src/main/java/picard/metrics/PerUnitMetricCollector.java",
   "sha256": "863c9ef4b6a49cf9c63283c975d7104a79b874f65b2cace233ba32fc9eaf641c",
   "language": "Java",
   "lines": 61,
   "truncated": false,
   "block": 22,
   "row": 10844
  },
  {
   "path": "src/main/java/picard/metrics/SAMRecordAndReference.java",
   "sha256": "d41c4270ff7fdcee51126ba9169ebd58a6331a32d0a075723acb800f4102df04",
   "language": "Java",
   "lines": 22,
   "truncated": false,
   "block": 22,
   "row": 10046
  },
  {
   "path": "src/main/java/picard/metrics/SAMRecordAndReferenceMultiLevelCollector.java",
   "sha256": "9af262972753dd3e3b174df07b2ffbe93545eba4df055d6d842618fec9247285",
   "language": "Java",
   "lines": 15,
   "truncated": false,
   "block": 22,
   "row": 10037
  },
  {
   "path": "src/main/java/picard/metrics/SAMRecordMultiLevelCollector.java",
   "sha256": "412f711d20dd0399d09cf8b5ab85d2558783f643de0bcf61d4a9fdc8fc52f934",
   "language": "Java",
   "lines": 14,
   "truncated": false,
   "block": 22,
   "row": 10088
  },
  {
   "path": "src/main/java/picard/nio/DeleteRecursive.java",
   "sha256": "2d211d384eeb0aba560e051a17b1a9ce3b7dcbab035a00d561ac7a03a0596468",
   "language": "Java",
   "lines": 68,
   "truncated": false,
   "block": 22,
   "row": 10644
  },
  {
   "path": "src/main/java/picard/nio/GATKUtils.java",
   "sha256": "3649ad6d216bbc9b576afaec228c4227ce934d75dd4f30a4478bbcbd5ddf7cc4",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10449
  },
  {
   "path": "src/main/java/picard/nio/GoogleStorageUtils.java",
   "sha256": "052e3bcb3743ee252b114ef9c9ee095bc4953bd8b7d8280e59e6565a4bcda154",
   "language": "Java",
   "lines": 91,
   "truncated": false,
   "block": 22,
   "row": 11115
  },
  {
   "path": "src/main/java/picard/nio/PathProvider.java",
   "sha256": "019db7b5adddbe3aed02bfb2afe692615a827636cabf93b37895b10c0d84a204",
   "language": "Java",
   "lines": 30,
   "truncated": false,
   "block": 22,
   "row": 10140
  },
  {
   "path": "src/main/java/picard/nio/PicardBucketUtils.java",
   "sha256": "ea282c31702518d3a8a29505f549baea9c72bead79937521e305b641bf18cd04",
   "language": "Java",
   "lines": 201,
   "truncated": false,
   "block": 22,
   "row": 11573
  },
  {
   "path": "src/main/java/picard/nio/PicardHtsPath.java",
   "sha256": "55079bc78bb475e7aa5313377e4b4dc36e6bfbb5927e1199bb1351e7872a322a",
   "language": "Java",
   "lines": 188,
   "truncated": false,
   "block": 22,
   "row": 11444
  },
  {
   "path": "src/main/java/picard/nio/PicardIOUtils.java",
   "sha256": "d497634396ba8b853671f38ef626204733fc575f073b8fe59b407cdc8b9b2bb4",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10874
  },
  {
   "path": "src/main/java/picard/pedigree/PedFile.java",
   "sha256": "0ae21c22c1ebd0a0755408c0f9f05e93fc8a4eb0c351feb2d8fd6f273c3826e9",
   "language": "Java",
   "lines": 167,
   "truncated": false,
   "block": 22,
   "row": 11378
  },
  {
   "path": "src/main/java/picard/pedigree/Sex.java",
   "sha256": "3b1457a1cc53badea6902a5abf3fa021005225c828ff8df7583ffed40f3e36d1",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10512
  },
  {
   "path": "src/main/java/picard/reference/ExtractSequences.java",
   "sha256": "91bf0941d891d5dd46cce77784f32262788f11d524b4074af8c77be4c8bf79e3",
   "language": "Java",
   "lines": 132,
   "truncated": false,
   "block": 22,
   "row": 11241
  },
  {
   "path": "src/main/java/picard/reference/NonNFastaSize.java",
   "sha256": "29de740635941371e62cdaf631c670e47d8ec6acb26b02bc55a4c60d404b86a7",
   "language": "Java",
   "lines": 126,
   "truncated": false,
   "block": 22,
   "row": 11244
  },
  {
   "path": "src/main/java/picard/reference/NormalizeFasta.java",
   "sha256": "cbed3305f0e801cbb9f5516e221453501b20fccb0575e609ba86b569724edf94",
   "language": "Java",
   "lines": 105,
   "truncated": false,
   "block": 22,
   "row": 11067
  },
  {
   "path": "src/main/java/picard/sam/AbstractAlignmentMerger.java",
   "sha256": "8ecca77d8a32914e3d387d6fcecd490116625e3cfd55cac35e8fefa540ea0e05",
   "language": "Java",
   "lines": 1131,
   "truncated": false,
   "block": 22,
   "row": 11943
  },
  {
   "path": "src/main/java/picard/sam/AddCommentsToBam.java",
   "sha256": "da27946acbbc592146352dbda7a8067e7b44eba08cef8df59f60762b0366a8bd",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10852
  },
  {
   "path": "src/main/java/picard/sam/AddOATag.java",
   "sha256": "7b32f55d640d4bd8cd42f1dcba72893ad013a06d97eaa29bdb5d52a08edc92a4",
   "language": "Java",
   "lines": 128,
   "truncated": false,
   "block": 22,
   "row": 11287
  },
  {
   "path": "src/main/java/picard/sam/AddOrReplaceReadGroups.java",
   "sha256": "ae28e4f9332f263ac46eebe89f25d86c91df3b82fd063049931fc022a74f0736",
   "language": "Java",
   "lines": 234,
   "truncated": false,
   "block": 22,
   "row": 11599
  },
  {
   "path": "src/main/java/picard/sam/BamIndexStats.java",
   "sha256": "839f5c09bed37f6cc0a6cdae000eb6af5b658ff172c5a11037b2fa847c67b36b",
   "language": "Java",
   "lines": 85,
   "truncated": false,
   "block": 22,
   "row": 10959
  },
  {
   "path": "src/main/java/picard/sam/BestEndMapqPrimaryAlignmentStrategy.java",
   "sha256": "c2a2c2eab908b4da3af091018033c3361b2a290159c6b588d779b88133402f8c",
   "language": "Java",
   "lines": 104,
   "truncated": false,
   "block": 22,
   "row": 11085
  },
  {
   "path": "src/main/java/picard/sam/BestMapqPrimaryAlignmentSelectionStrategy.java",
   "sha256": "3dbc39f8807e192cb97039a9cc59653bdb09a31538c79da064f042577d344679",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 11151
  },
  {
   "path": "src/main/java/picard/sam/BuildBamIndex.java",
   "sha256": "28d2338c114b43afb8a131710fae8caa02d417a77d6587cdb8e6050e831eb77c",
   "language": "Java",
   "lines": 127,
   "truncated": false,
   "block": 22,
   "row": 11223
  },
  {
   "path": "src/main/java/picard/sam/CalculateReadGroupChecksum.java",
   "sha256": "920e57edfb04c4f7edd58fa144f243de1582dedaf9a95474221e9030155d56ca",
   "language": "Java",
   "lines": 70,
   "truncated": false,
   "block": 22,
   "row": 10837
  },
  {
   "path": "src/main/java/picard/sam/CheckTerminatorBlock.java",
   "sha256": "58dc332aa10604a4289d8fc1f2ce16f6fe33b17e68201d579bc1771271d2d44b",
   "language": "Java",
   "lines": 47,
   "truncated": false,
   "block": 22,
   "row": 10493
  },
  {
   "path": "src/main/java/picard/sam/CleanSam.java",
   "sha256": "42086d5010cc3d416686febb48a8885b1edbaecea50fd9ae7b60f2625c259337",
   "language": "Java",
   "lines": 104,
   "truncated": false,
   "block": 22,
   "row": 11079
  },
  {
   "path": "src/main/java/picard/sam/CompareSAMs.java",
   "sha256": "40b262194206424d8b22ed32e233e0e86ddabe8f310ce1967f2c5d86fb494308",
   "language": "Java",
   "lines": 132,
   "truncated": false,
   "block": 22,
   "row": 11328
  },
  {
   "path": "src/main/java/picard/sam/CreateSequenceDictionary.java",
   "sha256": "6a2ed79af82df498bd2de6f704d321a21ebc41e16725d4eaf4b1a3eb6db51c81",
   "language": "Java",
   "lines": 354,
   "truncated": false,
   "block": 22,
   "row": 11776
  },
  {
   "path": "src/main/java/picard/sam/DownsampleSam.java",
   "sha256": "c867ddbbf94c1bf53a4dd85644ab01c621ed0cca07ac4ee2aa75efb800a478e5",
   "language": "Java",
   "lines": 329,
   "truncated": false,
   "block": 22,
   "row": 11779
  },
  {
   "path": "src/main/java/picard/sam/DuplicationMetrics.java",
   "sha256": "af744e2ce9be5a839b13bd2f071b4c9c439e101f31024b03cda6b1a84a03826c",
   "language": "Java",
   "lines": 276,
   "truncated": false,
   "block": 22,
   "row": 11595
  },
  {
   "path": "src/main/java/picard/sam/DuplicationMetricsFactory.java",
   "sha256": "b946b3269b2ad76311ed3d8161a3b66abec4b188097a67ea86a2e494f837fe29",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10543
  },
  {
   "path": "src/main/java/picard/sam/EarliestFragmentPrimaryAlignmentSelectionStrategy.java",
   "sha256": "e9e679ad87cc67b8b60c5b1c5a4ec7749d46a85c36bf765af3c6931c038da05b",
   "language": "Java",
   "lines": 93,
   "truncated": false,
   "block": 22,
   "row": 11105
  },
  {
   "path": "src/main/java/picard/sam/FastqToSam.java",
   "sha256": "b0d4eba832fe566f23110df93e1e12487a3ac38e9dd33ddccb4478385c10def6",
   "language": "Java",
   "lines": 598,
   "truncated": false,
   "block": 22,
   "row": 11890
  },
  {
   "path": "src/main/java/picard/sam/FilterSamReads.java",
   "sha256": "3886a53f93b81fe74ef4456a2847c7a850715d7adf8c50a9a7e5fe75e334a21c",
   "language": "Java",
   "lines": 403,
   "truncated": false,
   "block": 22,
   "row": 11810
  },
  {
   "path": "src/main/java/picard/sam/FixMateInformation.java",
   "sha256": "5065c6f414688394988b0f81d75c3ce8812b52f6eb44db7b544c4cfdd8d33c8b",
   "language": "Java",
   "lines": 303,
   "truncated": false,
   "block": 22,
   "row": 11731
  },
  {
   "path": "src/main/java/picard/sam/FlowBasedDuplicationMetrics.java",
   "sha256": "3e6d18ec1a57d220b92b2ea9b737da7304867f95de1aefbcbe1e6cb0e52dce24",
   "language": "Java",
   "lines": 99,
   "truncated": false,
   "block": 22,
   "row": 10897
  },
  {
   "path": "src/main/java/picard/sam/GatherBamFiles.java",
   "sha256": "6d0caf4b1c90d408a2e192cc55d914fa17895d61e13318686cb136eb09c14336",
   "language": "Java",
   "lines": 150,
   "truncated": false,
   "block": 22,
   "row": 11303
  },
  {
   "path": "src/main/java/picard/sam/HitsForInsert.java",
   "sha256": "141daed8bd3ec26c065d5f90aabf46a400b2e41e8d8011bdd13f43cf636ccc63",
   "language": "Java",
   "lines": 285,
   "truncated": false,
   "block": 22,
   "row": 11663
  },
  {
   "path": "src/main/java/picard/sam/MergeBamAlignment.java",
   "sha256": "9a74f3f722c7e7c9aea751e4e659977bee0ad3b9db20b41c8bbfed808f8673b6",
   "language": "Java",
   "lines": 415,
   "truncated": false,
   "block": 22,
   "row": 11865
  },
  {
   "path": "src/main/java/picard/sam/MergeSamFiles.java",
   "sha256": "1acc690763abb8c4a444b6da975abd69d7210a1e8e04657cdc5f0d9c26347395",
   "language": "Java",
   "lines": 242,
   "truncated": false,
   "block": 22,
   "row": 11679
  },
  {
   "path": "src/main/java/picard/sam/MostDistantPrimaryAlignmentSelectionStrategy.java",
   "sha256": "2eef683ec19b98b9b3f7fc1b0cb65f630ee479123ea0d45cc4845bdc0116f339",
   "language": "Java",
   "lines": 188,
   "truncated": false,
   "block": 22,
   "row": 11485
  },
  {
   "path": "src/main/java/picard/sam/MultiHitAlignedReadIterator.java",
   "sha256": "d9fbd19998659b1fe87eeded3839033d84510a021261c528210e468d1d24a1c4",
   "language": "Java",
   "lines": 215,
   "truncated": false,
   "block": 22,
   "row": 11574
  },
  {
   "path": "src/main/java/picard/sam/PositionBasedDownsampleSam.java",
   "sha256": "affd5ca5b62531f6bc44be82566d1ad7d43d5ded06c9a77fc2b75befad993b3d",
   "language": "Java",
   "lines": 449,
   "truncated": false,
   "block": 22,
   "row": 11854
  },
  {
   "path": "src/main/java/picard/sam/PrimaryAlignmentSelectionStrategy.java",
   "sha256": "06aa81d745d3638edf3ffe23adf5d1457ddd490d6db30c9ba9eeefbb7f24fd8b",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10471
  },
  {
   "path": "src/main/java/picard/sam/ReorderSam.java",
   "sha256": "5cb47158ecc705fcdf8cc663e202028cbd6a37482039b652a7096d45db6d20c4",
   "language": "Java",
   "lines": 290,
   "truncated": false,
   "block": 22,
   "row": 11724
  },
  {
   "path": "src/main/java/picard/sam/ReplaceSamHeader.java",
   "sha256": "654b9f242912265386f8525b000be0e09ed254b9a35fb184d92052bd98dd5fb7",
   "language": "Java",
   "lines": 149,
   "truncated": false,
   "block": 22,
   "row": 11376
  },
  {
   "path": "src/main/java/picard/sam/RevertOriginalBaseQualitiesAndAddMateCigar.java",
   "sha256": "4c8deb591495c42791bf8adf19b2ddc53d7747cbee76cc00d9f66a1dd46f8ebd",
   "language": "Java",
   "lines": 203,
   "truncated": false,
   "block": 22,
   "row": 11581
  },
  {
   "path": "src/main/java/picard/sam/RevertSam.java",
   "sha256": "bedff2f545df7f68070d9fe5efa9f4479aee20a51c114018b8ff194e0f86e636",
   "language": "Java",
   "lines": 932,
   "truncated": false,
   "block": 22,
   "row": 11932
  },
  {
   "path": "src/main/java/picard/sam/SamAlignmentMerger.java",
   "sha256": "6deb21bee7f054351478edb893107173b9a2f35c4179afec32b51d4752e9fe18",
   "language": "Java",
   "lines": 422,
   "truncated": false,
   "block": 22,
   "row": 11864
  },
  {
   "path": "src/main/java/picard/sam/SamComparisonMetric.java",
   "sha256": "a366d616009adeec1824b5b11862521cbc8ab0826cfe077944a73a6f5f0564bd",
   "language": "Java",
   "lines": 107,
   "truncated": false,
   "block": 22,
   "row": 11048
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/BaseCalculator.java",
   "sha256": "23a54ec36d277bc37b1a2111c7ebda73041b9e4ce5b743404384c296084ad4a5",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10592
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/BaseErrorAggregation.java",
   "sha256": "76192e147c5fe20e803cb94ba714737d8555a75a7ab37c745be9bbdc643de799",
   "language": "Java",
   "lines": 80,
   "truncated": false,
   "block": 22,
   "row": 10913
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/BaseErrorCalculator.java",
   "sha256": "67c01db1aa41b50f64217d5adeeea3cb659d7e0418ff6974d785e0959ac9d7cc",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10651
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/BaseErrorMetric.java",
   "sha256": "5d61e8ae0abd84a45495d0171c26c1858eb7d408098db1bf62276fad8a947406",
   "language": "Java",
   "lines": 57,
   "truncated": false,
   "block": 22,
   "row": 10594
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/CollectSamErrorMetrics.java",
   "sha256": "e1b1f0c407f4134b39e8856269534615647b7ca6ed63c52eb1ac08e7573a2fb5",
   "language": "Java",
   "lines": 823,
   "truncated": false,
   "block": 22,
   "row": 11917
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/ErrorMetric.java",
   "sha256": "255cb3811c5e615d75e5a1ef6a9756dcb4617096ebb687a39426ea7f68af633a",
   "language": "Java",
   "lines": 81,
   "truncated": false,
   "block": 22,
   "row": 10789
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/ErrorType.java",
   "sha256": "ad8a5b811f2a5ab3c8aaf1994f693abc2530e4cc1534e69094d17b2c38ce53bc",
   "language": "Java",
   "lines": 62,
   "truncated": false,
   "block": 22,
   "row": 10726
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/IndelErrorCalculator.java",
   "sha256": "42329cb21d84629ad21ac0b151ef5c89baa71d7e7c193546ffdb0886dad8ba3d",
   "language": "Java",
   "lines": 91,
   "truncated": false,
   "block": 22,
   "row": 10857
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/IndelErrorMetric.java",
   "sha256": "2ce418dd6e3ae559c6c2035eb3cebc731d2f1a18f4ec02e88b58bb48532f589e",
   "language": "Java",
   "lines": 97,
   "truncated": false,
   "block": 22,
   "row": 10841
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/OverlappingErrorMetric.java",
   "sha256": "75c6409d3041a61d002b33e383959efcecdacd9ccaf4a6a5375e7ee60259ad8a",
   "language": "Java",
   "lines": 95,
   "truncated": false,
   "block": 22,
   "row": 11107
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/OverlappingReadsErrorCalculator.java",
   "sha256": "4355ad9143e6c23206c4c35765fe81dd414ce5e59c296d6b46f6a3b781127599",
   "language": "Java",
   "lines": 147,
   "truncated": false,
   "block": 22,
   "row": 11354
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/ReadBaseStratification.java",
   "sha256": "a23bcfb16a78b2b1cfc046399578c2d22aa7629f3e263f3c6e627b46df823604",
   "language": "Java",
   "lines": 1291,
   "truncated": false,
   "block": 22,
   "row": 11939
  },
  {
   "path": "src/main/java/picard/sam/SamErrorMetric/SimpleErrorCalculator.java",
   "sha256": "cd153a0a87aba870aab6c223a6a08ccce55a24d8889eb24839a3cb2a9681e229",
   "language": "Java",
   "lines": 69,
   "truncated": false,
   "block": 22,
   "row": 10721
  },
  {
   "path": "src/main/java/picard/sam/SamFormatConverter.java",
   "sha256": "cb980427623b30716c6cd17eeac633de21d582f8ad6eb4dbd077d22dd7eff508",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 11089
  },
  {
   "path": "src/main/java/picard/sam/SamToFastq.java",
   "sha256": "15d31a4e733896154bbf97caf9925bb0ae21f739c5be1c2aea97f3f8735784c3",
   "language": "Java",
   "lines": 554,
   "truncated": false,
   "block": 22,
   "row": 11889
  },
  {
   "path": "src/main/java/picard/sam/SamToFastqWithTags.java",
   "sha256": "ac403046ebeebe455294b7226761b8791aacf13d72b8849bfefd86a0df398422",
   "language": "Java",
   "lines": 225,
   "truncated": false,
   "block": 22,
   "row": 11619
  },
  {
   "path": "src/main/java/picard/sam/SetNmAndUqTags.java",
   "sha256": "c179a4d6982427cb74d9a1b561764ab325bb2ad7e1e601b0bbf1abbe157e01fd",
   "language": "Java",
   "lines": 58,
   "truncated": false,
   "block": 22,
   "row": 10709
  },
  {
   "path": "src/main/java/picard/sam/SetNmMdAndUqTags.java",
   "sha256": "5553c5db4ef10dbdddcb7c5dfff081a5f5d6bc75a0437a280ea277bd66d3576d",
   "language": "Java",
   "lines": 151,
   "truncated": false,
   "block": 22,
   "row": 11310
  },
  {
   "path": "src/main/java/picard/sam/SortSam.java",
   "sha256": "6f053cca78d1714c2f95e27e482ad63ba83e7bbf4c4f38bf2715f8c8f6adfee8",
   "language": "Java",
   "lines": 173,
   "truncated": false,
   "block": 22,
   "row": 11491
  },
  {
   "path": "src/main/java/picard/sam/SplitSamByLibrary.java",
   "sha256": "0b8a22cbc34360640d6cc5f6341907b30a1981cc6fa09f74914f24cb404e95c8",
   "language": "Java",
   "lines": 186,
   "truncated": false,
   "block": 22,
   "row": 11438
  },
  {
   "path": "src/main/java/picard/sam/SplitSamByNumberOfReads.java",
   "sha256": "2fdaad1d99ea981bc48dc7b2e2f14ad8bd0c275ad83b865f3e234d0fb345f696",
   "language": "Java",
   "lines": 187,
   "truncated": false,
   "block": 22,
   "row": 11558
  },
  {
   "path": "src/main/java/picard/sam/ValidateSamFile.java",
   "sha256": "c3e84c247d73345576d92fd84595ba4a10e04f49df38565a59527e1de73b8ff7",
   "language": "Java",
   "lines": 309,
   "truncated": false,
   "block": 22,
   "row": 11756
  },
  {
   "path": "src/main/java/picard/sam/ViewSam.java",
   "sha256": "f927508e073601bba65dc6ddd36f8bf1ef75f5d4fd2e214daf0a627b5ba0f185",
   "language": "Java",
   "lines": 206,
   "truncated": false,
   "block": 22,
   "row": 11536
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/CheckDuplicateMarking.java",
   "sha256": "9b50932bfd99402742d3aa069b9cec5757aeaaa08a4b60357ef8d6d5bf7fa6cd",
   "language": "Java",
   "lines": 174,
   "truncated": false,
   "block": 22,
   "row": 11396
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/CollectDuplicateMetrics.java",
   "sha256": "1873317fa69affb8b122925634f129931bdbc02c1423029cecf0480795a65f07",
   "language": "Java",
   "lines": 105,
   "truncated": false,
   "block": 22,
   "row": 11039
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/ElcDuplicatesFinder.java",
   "sha256": "a7cf47b413d98113470417ca02feb9b1fa082ea7d7b3135af73cbb8659ecd4c4",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 10861
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/ElcDuplicatesFinderResolver.java",
   "sha256": "d389c34f82cca93b7863c452e0e85b8e3e70391acbab5bc9a3163b39e472a3b3",
   "language": "Java",
   "lines": 80,
   "truncated": false,
   "block": 22,
   "row": 10849
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/ElcHashBasedDuplicatesFinder.java",
   "sha256": "e8320412b01498811a4ec6291e920ca303cfaab5b87ef66b105e429480a376f4",
   "language": "Java",
   "lines": 242,
   "truncated": false,
   "block": 22,
   "row": 11555
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinder.java",
   "sha256": "1cc463c3e983089f6c733b60c914392f1aa5d8f55285c8ec1fd486618936aa96",
   "language": "Java",
   "lines": 116,
   "truncated": false,
   "block": 22,
   "row": 11138
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/EstimateLibraryComplexity.java",
   "sha256": "01af3acfb6f52c2da6f78a6dcccae0b0d36be342bed0227c932e5b57a25210b1",
   "language": "Java",
   "lines": 676,
   "truncated": false,
   "block": 22,
   "row": 11904
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/MarkDuplicates.java",
   "sha256": "944494d190971a2f2e00f83b41c1c6517f58d11e0d3666ed4d409583f3a6e874",
   "language": "Java",
   "lines": 1054,
   "truncated": false,
   "block": 22,
   "row": 11938
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/MarkDuplicatesForFlowArgumentCollection.java",
   "sha256": "eb296fcc654e31342312068b2cb4bcf3859cb48c229f218fc4881af12130ed39",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10881
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/MarkDuplicatesForFlowHelper.java",
   "sha256": "c90eedf2e643486d297ddc90e10aefb87c161bd9cecfd0dd5920047e9afa614a",
   "language": "Java",
   "lines": 504,
   "truncated": false,
   "block": 22,
   "row": 11861
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/MarkDuplicatesHelper.java",
   "sha256": "c5b7ed046991ad3fe61d506a7b72ba315789d3091ff376def2337b6535da5301",
   "language": "Java",
   "lines": 36,
   "truncated": false,
   "block": 22,
   "row": 10465
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigar.java",
   "sha256": "e56dfb1d94ff5f190dc86909f58322e113596d3e8f1d8ab76cfebf684e1bcc8f",
   "language": "Java",
   "lines": 237,
   "truncated": false,
   "block": 22,
   "row": 11683
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigarIterator.java",
   "sha256": "a9796da64048b31a2ba210c50d49091ac4d3ab657cd8a7a6f6692be3dcc172de",
   "language": "Java",
   "lines": 620,
   "truncated": false,
   "block": 22,
   "row": 11906
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigar.java",
   "sha256": "63b8d0b5380493b006cedf2a2189697af3e086a704e6778daf84dd0e44cba73c",
   "language": "Java",
   "lines": 236,
   "truncated": false,
   "block": 22,
   "row": 11640
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/UmiAwareDuplicateSetIterator.java",
   "sha256": "99d124871d370f3958aeb3802371f51fc9f3c2437c6257076725a28b09562f07",
   "language": "Java",
   "lines": 187,
   "truncated": false,
   "block": 22,
   "row": 11478
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigar.java",
   "sha256": "5cdfabbae9ce803dd45a5466ae6ec0b7aa1f9ccf0244438478797fe2b737f747",
   "language": "Java",
   "lines": 158,
   "truncated": false,
   "block": 22,
   "row": 11570
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/UmiGraph.java",
   "sha256": "173f8bff9bb562c2446d904926d735e5672fde9611981a77e91af61cf9e7f8ca",
   "language": "Java",
   "lines": 216,
   "truncated": false,
   "block": 22,
   "row": 11566
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/UmiMetrics.java",
   "sha256": "15e5ca19a0ca412fdfefd419bf42d502c777d3d1139424dd9239ea17b8a81ed6",
   "language": "Java",
   "lines": 156,
   "truncated": false,
   "block": 22,
   "row": 11377
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/UmiUtil.java",
   "sha256": "a0291b344c14f0f6cf33910b4b8c30767dbe8e872bcfe907465d3b25656edf77",
   "language": "Java",
   "lines": 189,
   "truncated": false,
   "block": 22,
   "row": 11481
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/AbstractMarkDuplicatesCommandLineProgram.java",
   "sha256": "dae2a34d18b8ccc7e8a34d6722c2d4088265c133390898ae8e3d219d286075ae",
   "language": "Java",
   "lines": 378,
   "truncated": false,
   "block": 22,
   "row": 11806
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/AbstractOpticalDuplicateFinderCommandLineProgram.java",
   "sha256": "02e315165ce3bda29dde144757e143872a58501490c7dd7e929de2d574417bf7",
   "language": "Java",
   "lines": 82,
   "truncated": false,
   "block": 22,
   "row": 11167
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/DiskBasedReadEndsForMarkDuplicatesMap.java",
   "sha256": "7ec8eaaecd3681b1490c5a10ad2d29e9b7f8d53ca794652aec9070c2a100db3a",
   "language": "Java",
   "lines": 111,
   "truncated": false,
   "block": 22,
   "row": 11212
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/LibraryIdGenerator.java",
   "sha256": "e3045c4e6a493bbc3986f9dd2c1de7905d3d912304173a0fb92a6c2de2991632",
   "language": "Java",
   "lines": 148,
   "truncated": false,
   "block": 22,
   "row": 11246
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/MarkQueue.java",
   "sha256": "cc4579ea698be314f8ba1e17d8fa137e0bb4b3c63bbc50aaeafcc5fed5997bd6",
   "language": "Java",
   "lines": 371,
   "truncated": false,
   "block": 22,
   "row": 11842
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/MemoryBasedReadEndsForMarkDuplicatesMap.java",
   "sha256": "abd7cfe57e67f930bf39303d91126a04b778adcc021c42772e3977c6183fadde",
   "language": "Java",
   "lines": 72,
   "truncated": false,
   "block": 22,
   "row": 10752
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/OpticalDuplicateFinder.java",
   "sha256": "6a20f257e6ba3ff7c1bcb2d411001d33d90a0ca3f5c1b2a671bf1393fc79bd85",
   "language": "Java",
   "lines": 342,
   "truncated": false,
   "block": 22,
   "row": 11818
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/PhysicalLocationForMateCigar.java",
   "sha256": "b09288238b0d02c1297f05dd3cb6264866c00672ed6fe6689ee46f04c2810a22",
   "language": "Java",
   "lines": 85,
   "truncated": false,
   "block": 22,
   "row": 10801
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/PhysicalLocationForMateCigarSet.java",
   "sha256": "64572f3870bcf8a60524d3629e72271f7607c18a62da752b2e35e169d7062e31",
   "language": "Java",
   "lines": 77,
   "truncated": false,
   "block": 22,
   "row": 10864
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEnds.java",
   "sha256": "f125bf929be1fba8b7f9301aea9f1c8c609396fb511fe82878bc2feb4dab00f1",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10822
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEndsForMarkDuplicates.java",
   "sha256": "7e9281b420cce9a8be204181e4401f0f0b2073798960e5b28e1d1a5cab2738dd",
   "language": "Java",
   "lines": 108,
   "truncated": false,
   "block": 22,
   "row": 11031
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesCodec.java",
   "sha256": "b62a217ad131335d93e2a6735275e300dc700518bc850ef6f6cd211cbf4a4d6d",
   "language": "Java",
   "lines": 124,
   "truncated": false,
   "block": 22,
   "row": 11150
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesMap.java",
   "sha256": "7fb97b445639171e53fc83f519e8367ffe109720698cca9eef991999c0646379",
   "language": "Java",
   "lines": 61,
   "truncated": false,
   "block": 22,
   "row": 10736
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesWithBarcodes.java",
   "sha256": "74799c26f82e5f39a271b580d9a73b6b0c7957df2b50a83c1353ca9e2d0d307c",
   "language": "Java",
   "lines": 53,
   "truncated": false,
   "block": 22,
   "row": 10620
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesWithBarcodesCodec.java",
   "sha256": "c361df67768a131b68f55cff6edf774066b7bc421cb266bde5e0014f84f6c28c",
   "language": "Java",
   "lines": 74,
   "truncated": false,
   "block": 22,
   "row": 10773
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/ReadEndsForMateCigar.java",
   "sha256": "0ac5be6375fe59c07ff4d3c825bfd046c6f84ee61cf2cbf7276168888018fddb",
   "language": "Java",
   "lines": 167,
   "truncated": false,
   "block": 22,
   "row": 11427
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/RepresentativeReadIndexerCodec.java",
   "sha256": "76b0d60e48d33bc35b1c2540777922f7a96a7b8343da2ced680a9cb80d8682d6",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 10835
  },
  {
   "path": "src/main/java/picard/sam/markduplicates/util/SamRecordWithOrdinalAndSetDuplicateReadFlag.java",
   "sha256": "feadbe75dd268b74db6dffedd58bf9ac5a2183f7f97366cfa84d4b088fc079f3",
   "language": "Java",
   "lines": 49,
   "truncated": false,
   "block": 22,
   "row": 10517
  },
  {
   "path": "src/main/java/picard/sam/util/PGTagArgumentCollection.java",
   "sha256": "fbd60aa38709a4ea0affa80ea1e1051365b7f3e8f4815c809ea8fbbc5b0fa714",
   "language": "Java",
   "lines": 13,
   "truncated": false,
   "block": 22,
   "row": 9973
  },
  {
   "path": "src/main/java/picard/sam/util/Pair.java",
   "sha256": "9d2e3d72b00e7a9a469e19a7c925ca866554eac2808d31d8b43d2231181b1937",
   "language": "Java",
   "lines": 102,
   "truncated": false,
   "block": 22,
   "row": 10805
  },
  {
   "path": "src/main/java/picard/sam/util/PhysicalLocation.java",
   "sha256": "62b0f318f4a5c031cfdd61b29aa2f432fe51d4f79f03b5741c97a87346ce67f1",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10195
  },
  {
   "path": "src/main/java/picard/sam/util/PhysicalLocationInt.java",
   "sha256": "adbe8845b300b839c904960c7b23dca323007a2074df5a82918bc655670eeb06",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10299
  },
  {
   "path": "src/main/java/picard/sam/util/PhysicalLocationShort.java",
   "sha256": "cdac7ddf853f2d074debf2e981d270b9099920aebac088472302cd4b605c13da",
   "language": "Java",
   "lines": 42,
   "truncated": false,
   "block": 22,
   "row": 10500
  },
  {
   "path": "src/main/java/picard/sam/util/PrimaryAlignmentKey.java",
   "sha256": "62a1412decd1128d30cfaeae0232c912ef85399d587dc442493c15c500c70a2d",
   "language": "Java",
   "lines": 55,
   "truncated": false,
   "block": 22,
   "row": 10485
  },
  {
   "path": "src/main/java/picard/sam/util/ReadNameParser.java",
   "sha256": "cd70240dfe4bc1f6981e39388988b2ad540e20f26839ccf00722c5dce2257687",
   "language": "Java",
   "lines": 221,
   "truncated": false,
   "block": 22,
   "row": 11583
  },
  {
   "path": "src/main/java/picard/sam/util/RepresentativeReadIndexer.java",
   "sha256": "6932d97709b07cf84ee746bb2d75bf2e2fc97de76dbe059e7dd8561c62a9e784",
   "language": "Java",
   "lines": 11,
   "truncated": false,
   "block": 22,
   "row": 9968
  },
  {
   "path": "src/main/java/picard/sam/util/SAMComparisonArgumentCollection.java",
   "sha256": "c54c72772c9b45dc63c00e1fa64caac66f6a31bd943747193bcd921abf63f7f1",
   "language": "Java",
   "lines": 33,
   "truncated": false,
   "block": 22,
   "row": 10628
  },
  {
   "path": "src/main/java/picard/sam/util/SamComparison.java",
   "sha256": "5bf02c8f86fba349ae474de8efae36cbe9d502bd40a9df6267cce0f39613a182",
   "language": "Java",
   "lines": 618,
   "truncated": false,
   "block": 22,
   "row": 11902
  },
  {
   "path": "src/main/java/picard/util/AbstractInputParser.java",
   "sha256": "29863b100a7aaa1139ec56d650c3cfbd2fadcfdeed964e69e67d4fa097680387",
   "language": "Java",
   "lines": 199,
   "truncated": false,
   "block": 22,
   "row": 11436
  },
  {
   "path": "src/main/java/picard/util/AccumulateQualityYieldMetrics.java",
   "sha256": "960eaf3d5b0a28173c033a8dd9b0de96162ced597f43a080e1b3deb4687ea2a2",
   "language": "Java",
   "lines": 77,
   "truncated": false,
   "block": 22,
   "row": 10882
  },
  {
   "path": "src/main/java/picard/util/AdapterMarker.java",
   "sha256": "2d16fb12ce150caec7971c9f5433e9abcac73e59db07acc8d855d3e49acd6870",
   "language": "Java",
   "lines": 427,
   "truncated": false,
   "block": 22,
   "row": 11816
  },
  {
   "path": "src/main/java/picard/util/AdapterPair.java",
   "sha256": "b2e08b9c946ee9e1a2fea55671876d3e77cff24e7caeb5285490f0f5539ad04a",
   "language": "Java",
   "lines": 16,
   "truncated": false,
   "block": 22,
   "row": 10002
  },
  {
   "path": "src/main/java/picard/util/AlleleSubsettingUtils.java",
   "sha256": "54e22ed46e5c9c8251759c2f91af94c1805a5b223820e30cfee5afcb6d74e5f1",
   "language": "Java",
   "lines": 272,
   "truncated": false,
   "block": 22,
   "row": 11718
  },
  {
   "path": "src/main/java/picard/util/AsyncIterator.java",
   "sha256": "241651dfc6dc6cda838d92cdfa4795555e37cb4ab9227f68915d6c47d61abb36",
   "language": "Java",
   "lines": 170,
   "truncated": false,
   "block": 22,
   "row": 11296
  },
  {
   "path": "src/main/java/picard/util/AtomicIterator.java",
   "sha256": "6a3280f8cd0c00d0db089161c5923414140f407ba4a9c041e0e66d9ff0eb52a0",
   "language": "Java",
   "lines": 12,
   "truncated": false,
   "block": 22,
   "row": 9950
  },
  {
   "path": "src/main/java/picard/util/BaitDesigner.java",
   "sha256": "c8f50e244805c569ec726d21bf675d0009b80fd09dc229de4599cc5268dd737b",
   "language": "Java",
   "lines": 641,
   "truncated": false,
   "block": 22,
   "row": 11893
  },
  {
   "path": "src/main/java/picard/util/BarcodeEditDistanceQuery.java",
   "sha256": "a89322d96f25b7131437cc9f3d2d0aa7e622ffb18421406159f15672f22e3520",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10751
  },
  {
   "path": "src/main/java/picard/util/BasicInputParser.java",
   "sha256": "1d793645745a7824e4f2ea9a08cdf213b41ec000ce6e562865956ea960d177e4",
   "language": "Java",
   "lines": 176,
   "truncated": false,
   "block": 22,
   "row": 11343
  },
  {
   "path": "src/main/java/picard/util/BedToIntervalList.java",
   "sha256": "2355abe19cc94f78b5e85312562dfd2d93b22257d0ec212abdacc0c2b49203c4",
   "language": "Java",
   "lines": 234,
   "truncated": false,
   "block": 22,
   "row": 11702
  },
  {
   "path": "src/main/java/picard/util/CircularByteBuffer.java",
   "sha256": "89f13a1d56aeebef2598dacc6ada5ea74c605b4af99e28eba5de84e6f66e20a0",
   "language": "Java",
   "lines": 94,
   "truncated": false,
   "block": 22,
   "row": 11041
  },
  {
   "path": "src/main/java/picard/util/ClippingUtility.java",
   "sha256": "ec1c221974a3824a1c0c316fce7e2a17903e9c912d55836c683a5cc6f9e59a80",
   "language": "Java",
   "lines": 318,
   "truncated": false,
   "block": 22,
   "row": 11758
  },
  {
   "path": "src/main/java/picard/util/CsvInputParser.java",
   "sha256": "e8e0a85b7cd08b19460931342863d8a0fb2ccc460adcfebf3e7df52598a40279",
   "language": "Java",
   "lines": 36,
   "truncated": false,
   "block": 22,
   "row": 10186
  },
  {
   "path": "src/main/java/picard/util/DbSnpBitSetUtil.java",
   "sha256": "cb6b6fd2c385b986b77cec616b4060a8980825b3632db144cb0810e182529907",
   "language": "Java",
   "lines": 271,
   "truncated": false,
   "block": 22,
   "row": 11727
  },
  {
   "path": "src/main/java/picard/util/DelimitedTextFileWithHeaderIterator.java",
   "sha256": "621db1e40e7ecf4c803afece1eca002a7918b6446cd80135acb2d1cb32aafb6d",
   "language": "Java",
   "lines": 115,
   "truncated": false,
   "block": 22,
   "row": 10909
  },
  {
   "path": "src/main/java/picard/util/FifoBuffer.java",
   "sha256": "e64b2457e4dceeeedc36555158bb2566a5d6d0a10a9d0ff668e8ea2c6b3c5e07",
   "language": "Java",
   "lines": 193,
   "truncated": false,
   "block": 22,
   "row": 11479
  },
  {
   "path": "src/main/java/picard/util/GraphUtils.java",
   "sha256": "6986eda4339a9a489d0fcdce62c588cac9fe4ff9d442dbbdba2a18f2c94eab7a",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11110
  },
  {
   "path": "src/main/java/picard/util/IlluminaUtil.java",
   "sha256": "50339e0aa583701d23c89f04a168b300dd84e2990b4ab734d224138b74237790",
   "language": "Java",
   "lines": 246,
   "truncated": false,
   "block": 22,
   "row": 11649
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScatter.java",
   "sha256": "0390fbb46a44b083650e32699479407d486152704936c9274f5f3b0c670f7b86",
   "language": "Java",
   "lines": 108,
   "truncated": false,
   "block": 22,
   "row": 11147
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScatterMode.java",
   "sha256": "36352c00c7509cc4426add73c28b8106b6b96c750e41014baaa3ce99302f3255",
   "language": "Java",
   "lines": 114,
   "truncated": false,
   "block": 22,
   "row": 11297
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScatterer.java",
   "sha256": "f9376392f0c25b6aba007066832a874431b2f43843b30705c357f4c24671e42f",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 11073
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScattererByBaseCount.java",
   "sha256": "0d7ca9ceadb8f2fb52d9b6c3ac5065a306aad48b47aa3f1195778753274c5f06",
   "language": "Java",
   "lines": 51,
   "truncated": false,
   "block": 22,
   "row": 10522
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScattererByIntervalCount.java",
   "sha256": "63ab49eb5b7bb792b621965ddf3ed874a9f67e600eec0104123752c81efe40f0",
   "language": "Java",
   "lines": 64,
   "truncated": false,
   "block": 22,
   "row": 10705
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScattererByIntervalCountWithDistributedRemainder.java",
   "sha256": "1549dc3daddb05db6af8a1c4d837d3a1319b10f0aad5df229ff83154efc4bd39",
   "language": "Java",
   "lines": 23,
   "truncated": false,
   "block": 22,
   "row": 10177
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScattererWithSubdivision.java",
   "sha256": "03556351fd42d5a75ba74f6bc4ad2ed86320f119f2a8d4c79ae0ffd8b8790d3c",
   "language": "Java",
   "lines": 74,
   "truncated": false,
   "block": 22,
   "row": 10796
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScattererWithoutSubdivision.java",
   "sha256": "0604a4158fa5db749ca14c2cfef0e8112148bd88e017ecddac8926ac3df3bf95",
   "language": "Java",
   "lines": 67,
   "truncated": false,
   "block": 22,
   "row": 10783
  },
  {
   "path": "src/main/java/picard/util/IntervalList/IntervalListScattererWithoutSubdivisionWithOverflow.java",
   "sha256": "fdb5c7e37c670c566ff534fafb9319c9bb843272611b7f0823d06854582aabca",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10469
  },
  {
   "path": "src/main/java/picard/util/IntervalListToBed.java",
   "sha256": "466d8af80e593c27c1d5b870987afa7d048459d90e0ccadf4bdf4aa817bf3d4e",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11220
  },
  {
   "path": "src/main/java/picard/util/IntervalListTools.java",
   "sha256": "8c3ff8d29845f4695b81fa51550e096bbfef21c330280f3890cd5a3b21426eac",
   "language": "Java",
   "lines": 638,
   "truncated": false,
   "block": 22,
   "row": 11903
  },
  {
   "path": "src/main/java/picard/util/Iterators.java",
   "sha256": "70d07873d390f7c76e37351a942f3e56a9d385a8eb81e40ee51df3aba876fa37",
   "language": "Java",
   "lines": 23,
   "truncated": false,
   "block": 22,
   "row": 10100
  },
  {
   "path": "src/main/java/picard/util/LiftOverIntervalList.java",
   "sha256": "bb8c0e1e410e6cc2f5e29bb67ee06aea63ed646234c4a7e9b46b5dfb6033b34d",
   "language": "Java",
   "lines": 186,
   "truncated": false,
   "block": 22,
   "row": 11571
  },
  {
   "path": "src/main/java/picard/util/LiftoverUtils.java",
   "sha256": "0d72e2840974d39c54d257cf630497107abc57e2067e5d3a457f2b3b9863930f",
   "language": "Java",
   "lines": 497,
   "truncated": false,
   "block": 22,
   "row": 11868
  },
  {
   "path": "src/main/java/picard/util/MathUtil.java",
   "sha256": "3d93ebe50970af4aeb75b551fad44aa5dfb92e5a4b40aa05e12a5eb3480cc74a",
   "language": "Java",
   "lines": 697,
   "truncated": false,
   "block": 22,
   "row": 11860
  },
  {
   "path": "src/main/java/picard/util/PropertyUtils.java",
   "sha256": "e9a5043a8cf21a8a02635621ad7f15f54f6f4f548e29565b0929c8dbae98997a",
   "language": "Java",
   "lines": 36,
   "truncated": false,
   "block": 22,
   "row": 10315
  },
  {
   "path": "src/main/java/picard/util/QuerySortedReadPairIteratorUtil.java",
   "sha256": "8a1bccf390226840be3331d53493fea7c253c0362fbcd4ada20cf3478324b6c6",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10632
  },
  {
   "path": "src/main/java/picard/util/RExecutor.java",
   "sha256": "e7971643dffa6cc40ab059597559200beb632c56cfdd4d24f342001bf3458391",
   "language": "Java",
   "lines": 133,
   "truncated": false,
   "block": 22,
   "row": 11237
  },
  {
   "path": "src/main/java/picard/util/ReflectionUtil.java",
   "sha256": "7475a95e0abf8b32e20e5188e036fee982b6e5cb55c7c3981efeaf83b8b2f507",
   "language": "Java",
   "lines": 49,
   "truncated": false,
   "block": 22,
   "row": 10497
  },
  {
   "path": "src/main/java/picard/util/ScatterIntervalsByNs.java",
   "sha256": "7f8ddfce5f0d5ad2fc43a5744737894bdf3a01de3c343d6a8159ee9f6ad09712",
   "language": "Java",
   "lines": 255,
   "truncated": false,
   "block": 22,
   "row": 11687
  },
  {
   "path": "src/main/java/picard/util/SequenceDictionaryUtils.java",
   "sha256": "1ec8955fed869694e8c2cc71e9d084bde523350e95889dd53b51deba02cfb416",
   "language": "Java",
   "lines": 256,
   "truncated": false,
   "block": 22,
   "row": 11584
  },
  {
   "path": "src/main/java/picard/util/SeriesStats.java",
   "sha256": "74e6bf56cd355b78d3c628df4ec98cbb954383bbc2891430288b85ae34c7adcc",
   "language": "Java",
   "lines": 128,
   "truncated": false,
   "block": 22,
   "row": 10826
  },
  {
   "path": "src/main/java/picard/util/SingleBarcodeDistanceMetric.java",
   "sha256": "a45e2f425b17536b9b7854ccd19ec07612f0b3fd4ec822efddf61a6668576b8c",
   "language": "Java",
   "lines": 282,
   "truncated": false,
   "block": 22,
   "row": 11647
  },
  {
   "path": "src/main/java/picard/util/TabbedInputParser.java",
   "sha256": "045c436eb276fe83c913691f1c70ca3c6ad93f7d261538f0148e1d94dada619b",
   "language": "Java",
   "lines": 64,
   "truncated": false,
   "block": 22,
   "row": 10612
  },
  {
   "path": "src/main/java/picard/util/TabbedTextFileWithHeaderParser.java",
   "sha256": "2ef1382a888cff04cf0f8bfdf25a6865d78e61a9a8092e61292dda866a9fa523",
   "language": "Java",
   "lines": 186,
   "truncated": false,
   "block": 22,
   "row": 11308
  },
  {
   "path": "src/main/java/picard/util/ThreadPoolExecutorUtil.java",
   "sha256": "6ed69f0e01f07104fbf72d77113de2fe834a5a350a9f1c2f0734c1a09c3560ce",
   "language": "Java",
   "lines": 29,
   "truncated": false,
   "block": 22,
   "row": 10328
  },
  {
   "path": "src/main/java/picard/util/ThreadPoolExecutorWithExceptions.java",
   "sha256": "f401baf7e3d6ba145d751f86c838d6b2ac1f47374c942ab7e738e112b3514206",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10684
  },
  {
   "path": "src/main/java/picard/util/UnsignedTypeUtil.java",
   "sha256": "b95de01d1fc23257311702ca2efe4f16c3c9a66979338310f90035ba74aeaee6",
   "language": "Java",
   "lines": 32,
   "truncated": false,
   "block": 22,
   "row": 10223
  },
  {
   "path": "src/main/java/picard/util/VariantType.java",
   "sha256": "5aae80bf34527d7ed3b77a5ab53587a00545f693523d73bff6eebe5bf4708dbc",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10472
  },
  {
   "path": "src/main/java/picard/util/help/HelpConstants.java",
   "sha256": "c18ac9ef4e9fc2fd7d5b3a8163616a21bd4e05a2ac4e915f8c6bd4340782aef4",
   "language": "Java",
   "lines": 98,
   "truncated": false,
   "block": 22,
   "row": 11190
  },
  {
   "path": "src/main/java/picard/util/help/PicardHelpDocWorkUnitHandler.java",
   "sha256": "4c3a0f71f07fae76eb83f65bfd35d4bed4624c14782fb939e1b9f7a36a9e7ca0",
   "language": "Java",
   "lines": 107,
   "truncated": false,
   "block": 22,
   "row": 11157
  },
  {
   "path": "src/main/java/picard/util/help/PicardHelpDoclet.java",
   "sha256": "76f9015dd28de79e4b6295c17d4fda2f3f8afacc2c15dfeba2e6ab2d92e17787",
   "language": "Java",
   "lines": 63,
   "truncated": false,
   "block": 22,
   "row": 10635
  },
  {
   "path": "src/main/java/picard/vcf/AccumulateVariantCallingMetrics.java",
   "sha256": "26609b746b657f30912f02899a49aa9ddb71cbd25225d9eb3eda25fa7e98be99",
   "language": "Java",
   "lines": 136,
   "truncated": false,
   "block": 22,
   "row": 11424
  },
  {
   "path": "src/main/java/picard/vcf/ByIntervalListVariantContextIterator.java",
   "sha256": "3c8b27b1e0007cbbc62436771f66b905926917397022c606941a801ef5b386ff",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10780
  },
  {
   "path": "src/main/java/picard/vcf/CallingMetricAccumulator.java",
   "sha256": "9b3386ec9bee5de32eaabab3685d89ff75ca0fe33ee97f7de101570fdd505372",
   "language": "Java",
   "lines": 280,
   "truncated": false,
   "block": 22,
   "row": 11693
  },
  {
   "path": "src/main/java/picard/vcf/CollectVariantCallingMetrics.java",
   "sha256": "8325efa92e5cbb1b288a7d244c206b9cf72af488412c0ea326cecd70edb7bfde",
   "language": "Java",
   "lines": 346,
   "truncated": false,
   "block": 22,
   "row": 11750
  },
  {
   "path": "src/main/java/picard/vcf/FixVcfHeader.java",
   "sha256": "adea5d1f40cd68226179b76e62a76177104f5b58f7e2255fe964a97bbd849f0c",
   "language": "Java",
   "lines": 233,
   "truncated": false,
   "block": 22,
   "row": 11671
  },
  {
   "path": "src/main/java/picard/vcf/GA4GHScheme.java",
   "sha256": "d14c4fbccbf245a6d025db8fad98858ff8fbce6aebe6dc1356af6cb374a36500",
   "language": "Java",
   "lines": 71,
   "truncated": false,
   "block": 22,
   "row": 11321
  },
  {
   "path": "src/main/java/picard/vcf/GA4GHSchemeWithMissingAsHomRef.java",
   "sha256": "f40f75deeb2e2c7945b7d8206b518be44f5eae2b1fcc395ad09f72db62ea485d",
   "language": "Java",
   "lines": 57,
   "truncated": false,
   "block": 22,
   "row": 11215
  },
  {
   "path": "src/main/java/picard/vcf/GatherVcfs.java",
   "sha256": "ca843cb5d0c5f48b1fa793f60cf44e9ed6054d70699c115949f5a2b1b18a8b3f",
   "language": "Java",
   "lines": 379,
   "truncated": false,
   "block": 22,
   "row": 11798
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordance.java",
   "sha256": "b64a7f0774a650d9b4a97df9588f01b32069111ae5886ae98a85c6edf0afe20c",
   "language": "Java",
   "lines": 1040,
   "truncated": false,
   "block": 22,
   "row": 11941
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceContingencyMetrics.java",
   "sha256": "12d3d1bfa182675b74edaffc04152546658dd6460168dd6a013d0324220007f2",
   "language": "Java",
   "lines": 64,
   "truncated": false,
   "block": 22,
   "row": 10682
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceCounts.java",
   "sha256": "3ad6e8bd8745831af91b2d041c413e5ab2e3062ceef42c8c33e5f6879e19d088",
   "language": "Java",
   "lines": 303,
   "truncated": false,
   "block": 22,
   "row": 11733
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceDetailMetrics.java",
   "sha256": "36d2eca049a59995c5574ce6f67a726b91d52be1236c980c4de0afaf71f3facf",
   "language": "Java",
   "lines": 43,
   "truncated": false,
   "block": 22,
   "row": 10616
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceScheme.java",
   "sha256": "cdd6b05fa99bf7ae72a981e3f6302a6032c935287c0d160b2d0f3ce981da4fd5",
   "language": "Java",
   "lines": 137,
   "truncated": false,
   "block": 22,
   "row": 11326
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceSchemeFactory.java",
   "sha256": "720a65a333b49fec1c86ed87bf23cbb0a185f9100852698b5a8625501c602f0a",
   "language": "Java",
   "lines": 39,
   "truncated": false,
   "block": 22,
   "row": 10385
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceStateCodes.java",
   "sha256": "3c1151dffb31d1dd37f081bb20753623409bfee7d8b61668b5a1380a8f179fde",
   "language": "Java",
   "lines": 23,
   "truncated": false,
   "block": 22,
   "row": 10099
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceStates.java",
   "sha256": "22ebf243400f26d89227c1b3d039f5a9e0eb5cfbff1b6524c1f26ce1cb8d6722",
   "language": "Java",
   "lines": 204,
   "truncated": false,
   "block": 22,
   "row": 11461
  },
  {
   "path": "src/main/java/picard/vcf/GenotypeConcordanceSummaryMetrics.java",
   "sha256": "4bc11ae12c600800a4f3fb8316f7c1ba6697cf517429fc376661e027707af20e",
   "language": "Java",
   "lines": 93,
   "truncated": false,
   "block": 22,
   "row": 11082
  },
  {
   "path": "src/main/java/picard/vcf/GvcfMetricAccumulator.java",
   "sha256": "1a897dcc080c9390cf2b19a011560ecdf5578a81a8883d2d5d2880b166bca83d",
   "language": "Java",
   "lines": 64,
   "truncated": false,
   "block": 22,
   "row": 10756
  },
  {
   "path": "src/main/java/picard/vcf/LiftoverVcf.java",
   "sha256": "86f3e4b286e7323da36eb7f83cc8a64831bab6113c99b3fbfe69fabf1b02e7d0",
   "language": "Java",
   "lines": 587,
   "truncated": false,
   "block": 22,
   "row": 11900
  },
  {
   "path": "src/main/java/picard/vcf/MakeSitesOnlyVcf.java",
   "sha256": "bd69a28e84884d1d26eddd995e438cfb0bada41a42bf040f2fc80e677d7f48e7",
   "language": "Java",
   "lines": 134,
   "truncated": false,
   "block": 22,
   "row": 11288
  },
  {
   "path": "src/main/java/picard/vcf/MakeVcfSampleNameMap.java",
   "sha256": "465b781bc67c09ad507d091e1081c3a8183ccd3f585a5de4bd20a59ab8172b01",
   "language": "Java",
   "lines": 141,
   "truncated": false,
   "block": 22,
   "row": 11268
  },
  {
   "path": "src/main/java/picard/vcf/MendelianViolations/FindMendelianViolations.java",
   "sha256": "fba6ad00e272242a1c79fc39358da1bceeaffe29851aab003ebf2ec3a5ebd71e",
   "language": "Java",
   "lines": 352,
   "truncated": false,
   "block": 22,
   "row": 11784
  },
  {
   "path": "src/main/java/picard/vcf/MendelianViolations/MendelianViolationDetector.java",
   "sha256": "3ebb060c814a18051499c98b43e9b5e508d2f8d462058159ea2fc56f55e4c231",
   "language": "Java",
   "lines": 358,
   "truncated": false,
   "block": 22,
   "row": 11790
  },
  {
   "path": "src/main/java/picard/vcf/MendelianViolations/MendelianViolationMetrics.java",
   "sha256": "490f345e0cf1170cf8b572b9a5b8be7fb5c6565dd80e87fbae83ea3f40203c28",
   "language": "Java",
   "lines": 89,
   "truncated": false,
   "block": 22,
   "row": 11042
  },
  {
   "path": "src/main/java/picard/vcf/MendelianViolations/MendelianViolationsByFamily.java",
   "sha256": "fd6995f3103f70ee81cb2a12a00777139d9ce5ae3ca7a059ffa37720acb68b09",
   "language": "Java",
   "lines": 41,
   "truncated": false,
   "block": 22,
   "row": 10419
  },
  {
   "path": "src/main/java/picard/vcf/MergeVcfs.java",
   "sha256": "d3d93a99731927fc659c4a31e4e6c9fcda3096cc9f4073fd17fc2593a92cc12b",
   "language": "Java",
   "lines": 248,
   "truncated": false,
   "block": 22,
   "row": 11673
  },
  {
   "path": "src/main/java/picard/vcf/PairedVariantSubContextIterator.java",
   "sha256": "a0859063cd15c0826ca546e96165a5feb9cbce4d95cc639a92a6475eb12eac2e",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11273
  },
  {
   "path": "src/main/java/picard/vcf/RenameSampleInVcf.java",
   "sha256": "68a8add7f55484b6ab2a98b2e90fd23adc0a652c073af3ff321ee5325f31bf64",
   "language": "Java",
   "lines": 142,
   "truncated": false,
   "block": 22,
   "row": 11311
  },
  {
   "path": "src/main/java/picard/vcf/SortVcf.java",
   "sha256": "7cf9a26f45bfd28972dab480168d43d8b18d36f504ce7a487e4508a5ef7fe670",
   "language": "Java",
   "lines": 188,
   "truncated": false,
   "block": 22,
   "row": 11552
  },
  {
   "path": "src/main/java/picard/vcf/SplitVcfs.java",
   "sha256": "8343e8502c4d48b0e4aa2580051276a7635cddc0bc0c6910719fffd680d5eb30",
   "language": "Java",
   "lines": 132,
   "truncated": false,
   "block": 22,
   "row": 11281
  },
  {
   "path": "src/main/java/picard/vcf/UpdateVcfSequenceDictionary.java",
   "sha256": "5e66017b2b3469ef52d92d689441438a1c3a5fc39265460f6d1de44c473de155",
   "language": "Java",
   "lines": 107,
   "truncated": false,
   "block": 22,
   "row": 11145
  },
  {
   "path": "src/main/java/picard/vcf/VcfFormatConverter.java",
   "sha256": "4b603441a756a2eeeb2f10e2b418bb19d50cbfe579c56906a8d40ce9b9bf0ac8",
   "language": "Java",
   "lines": 127,
   "truncated": false,
   "block": 22,
   "row": 11221
  },
  {
   "path": "src/main/java/picard/vcf/VcfToIntervalList.java",
   "sha256": "8850827a66feaf74d72f2a265af54a66cc56a0541d0e2e948b60b58bc5edf606",
   "language": "Java",
   "lines": 124,
   "truncated": false,
   "block": 22,
   "row": 11191
  },
  {
   "path": "src/main/java/picard/vcf/VcfUtils.java",
   "sha256": "6e061219ca57d8f7fc4b0070358784ab8c5c16c8dbacfecf3bb743962b309fb3",
   "language": "Java",
   "lines": 22,
   "truncated": false,
   "block": 22,
   "row": 10079
  },
  {
   "path": "src/main/java/picard/vcf/filter/AlleleBalanceFilter.java",
   "sha256": "4b027204440a8b2c105159916fd1c8e1fdb7e82247c3eb443636dc2d2ba1187c",
   "language": "Java",
   "lines": 86,
   "truncated": false,
   "block": 22,
   "row": 10925
  },
  {
   "path": "src/main/java/picard/vcf/filter/DepthFilter.java",
   "sha256": "de6270d4b61523d75b0dae8edce443b7b60b0cc115edb54734216dd4d5539a10",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10470
  },
  {
   "path": "src/main/java/picard/vcf/filter/FilterApplyingVariantIterator.java",
   "sha256": "656c5e73febdac6baea64868672305dd2d476a885be24172cab0092a8d545198",
   "language": "Java",
   "lines": 134,
   "truncated": false,
   "block": 22,
   "row": 11264
  },
  {
   "path": "src/main/java/picard/vcf/filter/FilterVcf.java",
   "sha256": "2731fd1db320e137accc7b86c0ae9a3ce5b7957170ff2170866518f16d0c4f2f",
   "language": "Java",
   "lines": 198,
   "truncated": false,
   "block": 22,
   "row": 11554
  },
  {
   "path": "src/main/java/picard/vcf/filter/FisherStrandFilter.java",
   "sha256": "ccec6eb5469bb89196279a199bfd5eacb01afff50e509fdde3b211532dd603f7",
   "language": "Java",
   "lines": 55,
   "truncated": false,
   "block": 22,
   "row": 10597
  },
  {
   "path": "src/main/java/picard/vcf/filter/GenotypeFilter.java",
   "sha256": "ac12cf149828d21666dece62223b9c6f5cb1c7f13053e688374204bdceca1ff7",
   "language": "Java",
   "lines": 38,
   "truncated": false,
   "block": 22,
   "row": 10482
  },
  {
   "path": "src/main/java/picard/vcf/filter/GenotypeQualityFilter.java",
   "sha256": "740e132df0f9c808ba3bfec3494c33da127a5c8c977cd66a5b62a7ad7a8a3708",
   "language": "Java",
   "lines": 46,
   "truncated": false,
   "block": 22,
   "row": 10478
  },
  {
   "path": "src/main/java/picard/vcf/filter/QdFilter.java",
   "sha256": "cd0b80f1dbbc9a3a4add610b968cbb1fbcde64b7f759aca302df0780ad3d2080",
   "language": "Java",
   "lines": 62,
   "truncated": false,
   "block": 22,
   "row": 10647
  },
  {
   "path": "src/main/java/picard/vcf/filter/VariantFilter.java",
   "sha256": "555aac47571e82c8a3b085c435a5accbbdb774ced138a16a7aff5784ccd155ff",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10537
  },
  {
   "path": "src/main/java/picard/vcf/processor/VariantAccumulatorExecutor.java",
   "sha256": "f1c33de254eb4b439235734f75ea87df26b4ffd4d495a0ea72296e17b6f1c885",
   "language": "Java",
   "lines": 159,
   "truncated": false,
   "block": 22,
   "row": 11374
  },
  {
   "path": "src/main/java/picard/vcf/processor/VariantIteratorProducer.java",
   "sha256": "1d60997bb937377deedb72fa168ecf96e1634645bb43e64016fead16ae8f4050",
   "language": "Java",
   "lines": 272,
   "truncated": false,
   "block": 22,
   "row": 11752
  },
  {
   "path": "src/main/java/picard/vcf/processor/VariantProcessor.java",
   "sha256": "d2e5f13e7bcd6bb1b65ff275a14fb2ab867dc8aa90c56b75aaf25a6c151b4fc3",
   "language": "Java",
   "lines": 179,
   "truncated": false,
   "block": 22,
   "row": 11412
  },
  {
   "path": "src/main/java/picard/vcf/processor/VcfFileSegment.java",
   "sha256": "a606b5ca7360bee4b43b0359f44b13a73764479951a18029b87805d3c3297b96",
   "language": "Java",
   "lines": 91,
   "truncated": false,
   "block": 22,
   "row": 10765
  },
  {
   "path": "src/main/java/picard/vcf/processor/VcfFileSegmentGenerator.java",
   "sha256": "f7e477f386a8a21da3ba96708e72aba0ebb7cd2d43ddcd31d396e7988a5736e0",
   "language": "Java",
   "lines": 191,
   "truncated": false,
   "block": 22,
   "row": 11448
  },
  {
   "path": "src/main/java/picard/vcf/processor/VcfPathSegment.java",
   "sha256": "9d264514df674b77299ad35735f3b5e0b0037b3234a4dc2554d944aafbaa6f91",
   "language": "Java",
   "lines": 85,
   "truncated": false,
   "block": 22,
   "row": 10755
  },
  {
   "path": "src/main/java/picard/vcf/processor/VcfPathSegmentGenerator.java",
   "sha256": "ae91274655cb7664d3966022a65ab3587ceae00be27b253da5e10bef2ee43262",
   "language": "Java",
   "lines": 190,
   "truncated": false,
   "block": 22,
   "row": 11449
  },
  {
   "path": "src/main/java/picard/vcf/processor/util/PredicateFilterDecoratingClosableIterator.java",
   "sha256": "6251d0cdfcff7ca0d23dfa36698091dbbc333d9ad5e84c2dfa00e1d3b2593627",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 10786
  },
  {
   "path": "src/main/resources/picard/analysis/baseDistributionByCycle.R",
   "sha256": "21aa07cb69dbfe2d9abb0c2ccca41378789f46e9787aaeda844b44aa5191baac",
   "language": "R",
   "lines": 52,
   "truncated": false,
   "block": 8,
   "row": 1811
  },
  {
   "path": "src/main/resources/picard/analysis/checkRInstallation.R",
   "sha256": "659ff31fe6897a4b270e358bcfeaedc24c2d842a79874aaf66f4578020abbb22",
   "language": "R",
   "lines": 4,
   "truncated": false,
   "block": 23,
   "row": 15435
  },
  {
   "path": "src/main/resources/picard/analysis/gcBias.R",
   "sha256": "b402b979fd4e12b6504b3767efa16ca07c0f77afab2b48619fbfa594d14ecaef",
   "language": "R",
   "lines": 110,
   "truncated": false,
   "block": 23,
   "row": 16045
  },
  {
   "path": "src/main/resources/picard/analysis/insertSizeHistogram.R",
   "sha256": "1e68753468f0af24ebbfb09061f13fc2907ecb2c0995f6cee9df76b977237139",
   "language": "R",
   "lines": 105,
   "truncated": false,
   "block": 23,
   "row": 15994
  },
  {
   "path": "src/main/resources/picard/analysis/meanQualityByCycle.R",
   "sha256": "2d54ffac907e933313253d35c90036339d3577f81ada0b6fd90071da37d76528",
   "language": "R",
   "lines": 59,
   "truncated": false,
   "block": 8,
   "row": 1945
  },
  {
   "path": "src/main/resources/picard/analysis/qualityScoreDistribution.R",
   "sha256": "1c4d841764807c7a000eec072c5d05fc2eeaa779fe2405fb0efdbf323db27f37",
   "language": "R",
   "lines": 57,
   "truncated": false,
   "block": 8,
   "row": 1952
  },
  {
   "path": "src/main/resources/picard/analysis/readLengthDistribution.R",
   "sha256": "8807107b306fa9a283064d371c1c92ec628c338e1dbe701a8f9e9eb28b40d321",
   "language": "R",
   "lines": 68,
   "truncated": false,
   "block": 23,
   "row": 15750
  },
  {
   "path": "src/main/resources/picard/analysis/rnaSeqCoverage.R",
   "sha256": "da285d92897f280e18718cf07cde995178300caafe287b0bab7fe81cf254de1d",
   "language": "R",
   "lines": 70,
   "truncated": false,
   "block": 23,
   "row": 15827
  },
  {
   "path": "src/main/resources/picard/analysis/rrbsQc.R",
   "sha256": "aab62c767fde3d11bc9acbadc225e63b4dda4f4cea0f2ae27ee5d50c5f398549",
   "language": "R",
   "lines": 109,
   "truncated": false,
   "block": 23,
   "row": 16103
  },
  {
   "path": "src/main/resources/picard/analysis/sample_relatedness_network.py",
   "sha256": "596bdb6417eec830afa9683726277638a80480851d9749e4fe50cc554a6eeb1a",
   "language": "Python",
   "lines": 146,
   "truncated": false,
   "block": 23,
   "row": 8216
  },
  {
   "path": "src/main/resources/picard/analysis/visualize_cluster_crosscheck_output.py",
   "sha256": "e45d030a6645d5b4fd4366e7212c390c1c885a35a939135345f183cd6677c666",
   "language": "Python",
   "lines": 217,
   "truncated": false,
   "block": 23,
   "row": 10642
  },
  {
   "path": "src/main/resources/picard/analysis/wgsHistogram.R",
   "sha256": "0807bb181bcf8847f4af04db11a5c3e728bdc61be745a8fd8a44aa08037ace90",
   "language": "R",
   "lines": 121,
   "truncated": false,
   "block": 23,
   "row": 16042
  },
  {
   "path": "src/main/resources/release_picard.sh",
   "sha256": "ef9bb430b51b2e817453d1f73477a3fcecdfd664414bea727d600ef76ef25e88",
   "language": "Shell",
   "lines": 290,
   "truncated": false,
   "block": 24,
   "row": 44
  },
  {
   "path": "src/test/java/picard/IntelInflaterDeflaterLoadTest.java",
   "sha256": "77221aa8b3e3f56637fcbf4f2fdef9211f1bd8a7bdd4032d4630ba343cbde41f",
   "language": "Java",
   "lines": 97,
   "truncated": false,
   "block": 22,
   "row": 11032
  },
  {
   "path": "src/test/java/picard/TestDataProviders.java",
   "sha256": "3a56a94bae03e7ed09278d6a97ccb0f2808bccc9d8bd1f6345281b424c63747a",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 10979
  },
  {
   "path": "src/test/java/picard/analysis/AbstractWgsMetricsCollectorTest.java",
   "sha256": "91cdc2fa271fc430a5481b341637704125c20daff0d2ae330da1211506f958dc",
   "language": "Java",
   "lines": 107,
   "truncated": false,
   "block": 22,
   "row": 11127
  },
  {
   "path": "src/test/java/picard/analysis/AdapterUtilityTest.java",
   "sha256": "5dc11f41980333774b884c16f4b66132eaccd78a86dbbfce8d7f1b77ab1529f4",
   "language": "Java",
   "lines": 68,
   "truncated": false,
   "block": 22,
   "row": 11094
  },
  {
   "path": "src/test/java/picard/analysis/AlignmentSummaryMetricsCollectorTest.java",
   "sha256": "41c8867556b637ce5954570544bc72aa2df65139c70d308d64cb3e640761af12",
   "language": "Java",
   "lines": 48,
   "truncated": false,
   "block": 22,
   "row": 10423
  },
  {
   "path": "src/test/java/picard/analysis/CollectAlignmentSummaryMetricsTest.java",
   "sha256": "481f2a1871aa1ac7041c81b62acfa9f66bc06e9125e7d276aa2dee143308ed51",
   "language": "Java",
   "lines": 847,
   "truncated": false,
   "block": 22,
   "row": 11928
  },
  {
   "path": "src/test/java/picard/analysis/CollectBaseDistributionByCycleTest.java",
   "sha256": "97b65235acefd0fe1ad82e5c43751a676814bb782fc9e50087a108c77d6551c4",
   "language": "Java",
   "lines": 207,
   "truncated": false,
   "block": 22,
   "row": 11524
  },
  {
   "path": "src/test/java/picard/analysis/CollectGcBiasMetricsTest.java",
   "sha256": "3fef689b9f2c05787ba3306098b0b4f06aa0024f7162bcca647c3d41d58d8dfc",
   "language": "Java",
   "lines": 569,
   "truncated": false,
   "block": 22,
   "row": 11894
  },
  {
   "path": "src/test/java/picard/analysis/CollectInsertSizeMetricsTest.java",
   "sha256": "a6bd3db81550bb2405eea06b853fb3ba1784ff0e00f415df1e022e5f75b7fe34",
   "language": "Java",
   "lines": 455,
   "truncated": false,
   "block": 22,
   "row": 11866
  },
  {
   "path": "src/test/java/picard/analysis/CollectJumpingLibraryMetricsTest.java",
   "sha256": "c1647aeb322ce3819b7517c6d0884f44c4f996fd04af55fb5823030f7e3ec6f9",
   "language": "Java",
   "lines": 50,
   "truncated": false,
   "block": 22,
   "row": 10664
  },
  {
   "path": "src/test/java/picard/analysis/CollectMultipleMetricsTest.java",
   "sha256": "4318aaf79589e1ff435bd90fbf25d8998fc5e505d23d9acc6b7f4d2849e1af18",
   "language": "Java",
   "lines": 698,
   "truncated": false,
   "block": 22,
   "row": 11924
  },
  {
   "path": "src/test/java/picard/analysis/CollectOxoGMetricsTest.java",
   "sha256": "57efaf1dd761b1ceedeb0049647d0c019d95e6eb8bc9cfdabdefb0d281ccc2b6",
   "language": "Java",
   "lines": 247,
   "truncated": false,
   "block": 22,
   "row": 11704
  },
  {
   "path": "src/test/java/picard/analysis/CollectQualityYieldMetricsFlowTest.java",
   "sha256": "94fa25961a4408188484c35131af095dfa48d961c0bc5af09d23395f79539dc6",
   "language": "Java",
   "lines": 74,
   "truncated": false,
   "block": 22,
   "row": 10824
  },
  {
   "path": "src/test/java/picard/analysis/CollectQualityYieldMetricsSNVQTest.java",
   "sha256": "c6948e59fe08e60a6938a6e28a95c3a6b4d9b8592c65feae831ab6a4f0a072a4",
   "language": "Java",
   "lines": 93,
   "truncated": false,
   "block": 22,
   "row": 11086
  },
  {
   "path": "src/test/java/picard/analysis/CollectQualityYieldMetricsTest.java",
   "sha256": "1ccd38cd1ee34bbbf5c1e5813c6473b76c5967832b81f58371419405f5919b7e",
   "language": "Java",
   "lines": 81,
   "truncated": false,
   "block": 22,
   "row": 10866
  },
  {
   "path": "src/test/java/picard/analysis/CollectRnaSeqMetricsTest.java",
   "sha256": "a036814a4d9d03cdef1a5eb06538ee7de5e4724932c4fb3a36e2477da2762b85",
   "language": "Java",
   "lines": 658,
   "truncated": false,
   "block": 22,
   "row": 11910
  },
  {
   "path": "src/test/java/picard/analysis/CollectRrbsMetricsTest.java",
   "sha256": "09e1b0c05002856716e9edc208ecc18afd67a26cd73177453a5338e8bc69094f",
   "language": "Java",
   "lines": 163,
   "truncated": false,
   "block": 22,
   "row": 11471
  },
  {
   "path": "src/test/java/picard/analysis/CollectUmiPrevalenceMetricsTest.java",
   "sha256": "76055e4302b0d21767020c174eea375ee724a6f36f3ea2ec7b06aff94e8afc32",
   "language": "Java",
   "lines": 50,
   "truncated": false,
   "block": 22,
   "row": 10453
  },
  {
   "path": "src/test/java/picard/analysis/CollectWgsMetricsTest.java",
   "sha256": "27ddd30024868f2f58c024cb84a39ed132f6d56c64a823b710df544633635928",
   "language": "Java",
   "lines": 546,
   "truncated": false,
   "block": 22,
   "row": 11881
  },
  {
   "path": "src/test/java/picard/analysis/CollectWgsMetricsTestUtils.java",
   "sha256": "3b2b71dc15c8462d5f509173ae066e0f8a3dda7b003a6504a5208be16aadf217",
   "language": "Java",
   "lines": 248,
   "truncated": false,
   "block": 22,
   "row": 11603
  },
  {
   "path": "src/test/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverageTest.java",
   "sha256": "e531ca1f7471458359a9c711aa62eb0a83c620a3cb0fa7a8aa02364f203e0f6a",
   "language": "Java",
   "lines": 340,
   "truncated": false,
   "block": 22,
   "row": 11770
  },
  {
   "path": "src/test/java/picard/analysis/CompareMetricsTest.java",
   "sha256": "90a4c36434572082c9cc7801efb7c3bf0479225324272295365b38a0c3829102",
   "language": "Java",
   "lines": 133,
   "truncated": false,
   "block": 22,
   "row": 11575
  },
  {
   "path": "src/test/java/picard/analysis/CounterManagerTest.java",
   "sha256": "d595c09e52b09c4e05edbbc7a8aa14b4e614c13e807af0506fb1aa63950d978b",
   "language": "Java",
   "lines": 95,
   "truncated": false,
   "block": 22,
   "row": 10876
  },
  {
   "path": "src/test/java/picard/analysis/FastWgsMetricsCollectorTest.java",
   "sha256": "5daa42215d3318710d6bc7a2b984248fb3680e715e56c86d044822b810eb1647",
   "language": "Java",
   "lines": 278,
   "truncated": false,
   "block": 22,
   "row": 11759
  },
  {
   "path": "src/test/java/picard/analysis/MeanQualityByCycleTest.java",
   "sha256": "5f44fe6b180135a8404a98fe84c0e0e242123910869060846b83fcb32ccd5ccd",
   "language": "Java",
   "lines": 129,
   "truncated": false,
   "block": 22,
   "row": 11196
  },
  {
   "path": "src/test/java/picard/analysis/MergeableMetricBaseTest.java",
   "sha256": "00541a1e261ba432ebdfebcab58876086afae59a4726f6bbb646f86fdb90152c",
   "language": "Java",
   "lines": 324,
   "truncated": false,
   "block": 22,
   "row": 11648
  },
  {
   "path": "src/test/java/picard/analysis/MultiLevelCollectorTest.java",
   "sha256": "71678bc174a73d82d390358a01ec731c6448ccd23df4abef106ee65f6d291b77",
   "language": "Java",
   "lines": 195,
   "truncated": false,
   "block": 22,
   "row": 11458
  },
  {
   "path": "src/test/java/picard/analysis/QualityScoreDistributionTest.java",
   "sha256": "89a1c5c2d0f094ab1f0303071fdb3ae6db050a4e3e4ade0d4dc8cabe0c8142e1",
   "language": "Java",
   "lines": 134,
   "truncated": false,
   "block": 22,
   "row": 11240
  },
  {
   "path": "src/test/java/picard/analysis/TheoreticalSensitivityTest.java",
   "sha256": "f5513509c7fb295ae2dd866111bf6780c2b794a6279ef94c1ec8072889139a37",
   "language": "Java",
   "lines": 418,
   "truncated": false,
   "block": 22,
   "row": 11844
  },
  {
   "path": "src/test/java/picard/analysis/WgsMetricsProcessorImplTest.java",
   "sha256": "0b094562d233c71de0a1a98a5a4fc8e90c9ba4d66e4f3eb9a1fe2c5bc48175bd",
   "language": "Java",
   "lines": 86,
   "truncated": false,
   "block": 22,
   "row": 11055
  },
  {
   "path": "src/test/java/picard/analysis/WgsMetricsTest.java",
   "sha256": "6225e5ec2d1354a09a166a6011ecb11f4bec1ba77467c824f44d9a2397ede07a",
   "language": "Java",
   "lines": 110,
   "truncated": false,
   "block": 22,
   "row": 11186
  },
  {
   "path": "src/test/java/picard/analysis/artifacts/CollectSequencingArtifactMetricsTest.java",
   "sha256": "931e4e49bf003ba592720f0f960d29b5f46d7f3f312f81615ca6826b60435f73",
   "language": "Java",
   "lines": 132,
   "truncated": false,
   "block": 22,
   "row": 11260
  },
  {
   "path": "src/test/java/picard/analysis/artifacts/ConvertSequencingArtifactToOxoGTest.java",
   "sha256": "362eda41abb0b8dcbaab85e3146f1f97c24676e9fec87c53a915b8b450bf37d1",
   "language": "Java",
   "lines": 157,
   "truncated": false,
   "block": 22,
   "row": 11411
  },
  {
   "path": "src/test/java/picard/analysis/artifacts/TransitionTest.java",
   "sha256": "31c44a5ef9e32b82e5db57f10df789efec28f65dc1d2f21278f425fb91dedd60",
   "language": "Java",
   "lines": 51,
   "truncated": false,
   "block": 22,
   "row": 10434
  },
  {
   "path": "src/test/java/picard/analysis/directed/CollectHsMetricsTest.java",
   "sha256": "1ad4817e2e87962218bf946067ef3b90c63644d6d36fc1ca314f5ccce40c0e2e",
   "language": "Java",
   "lines": 295,
   "truncated": false,
   "block": 22,
   "row": 11785
  },
  {
   "path": "src/test/java/picard/analysis/directed/CollectTargetedMetricsTest.java",
   "sha256": "31f3f6f99a188a2f3ec0d4188a685cf56be664795dd74612a012c800923351e9",
   "language": "Java",
   "lines": 256,
   "truncated": false,
   "block": 22,
   "row": 11639
  },
  {
   "path": "src/test/java/picard/analysis/replicates/CollectIndependentReplicatesMetricTest.java",
   "sha256": "050feeca3ef87ae2b59e95e26ce5e09098d942f8c76279b928c977926bc870a4",
   "language": "Java",
   "lines": 222,
   "truncated": false,
   "block": 22,
   "row": 11518
  },
  {
   "path": "src/test/java/picard/annotation/SortGffTest.java",
   "sha256": "a2582af17dd18b7ce940f549ffd2167af82d6947e7648812fa05e776c89094cc",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 11140
  },
  {
   "path": "src/test/java/picard/arrays/CollectArraysVariantCallingMetricsTest.java",
   "sha256": "013474f9a081badcad853993ebda3db6cd002269c046f9c67e9c96b5345e33ac",
   "language": "Java",
   "lines": 353,
   "truncated": false,
   "block": 22,
   "row": 11849
  },
  {
   "path": "src/test/java/picard/arrays/CreateBafRegressMetricsFileTest.java",
   "sha256": "f77ddfcd95e7567e8f8ffcf5c14280f824099e5989561a9a2e039cab1bcbeaa2",
   "language": "Java",
   "lines": 58,
   "truncated": false,
   "block": 22,
   "row": 10748
  },
  {
   "path": "src/test/java/picard/arrays/CreateVerifyIDIntensityContaminationMetricsFileTest.java",
   "sha256": "56f7beea2714b0ac6c204e88871b254d094f46a99fea862482e4be9cf889366f",
   "language": "Java",
   "lines": 71,
   "truncated": false,
   "block": 22,
   "row": 11009
  },
  {
   "path": "src/test/java/picard/arrays/GtcToVcfTest.java",
   "sha256": "ab9b3f3dc4d57c1b7a60fac207af49a5efc332c505c28ac24e69281fdcfc74ac",
   "language": "Java",
   "lines": 130,
   "truncated": false,
   "block": 22,
   "row": 11410
  },
  {
   "path": "src/test/java/picard/arrays/MergePedIntoVcfTest.java",
   "sha256": "21331977a0685d762a0f2b12066c0ffd04c519e960ff74d475933123e82e2b09",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10364
  },
  {
   "path": "src/test/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecordCreatorTest.java",
   "sha256": "6c86166bf6815cca98fec01ca9e0ad41a4220aaa5ccd47105630a08b294ffe23",
   "language": "Java",
   "lines": 124,
   "truncated": false,
   "block": 22,
   "row": 11564
  },
  {
   "path": "src/test/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestTest.java",
   "sha256": "a2457c894d9fc810be37db5f26645df0f9233f720208462d9a7f8099697326b4",
   "language": "Java",
   "lines": 126,
   "truncated": false,
   "block": 22,
   "row": 11425
  },
  {
   "path": "src/test/java/picard/arrays/illumina/CombineGenotypingArrayVcfsTest.java",
   "sha256": "e73bfb7d831671b7b38a4d703b0fd462cf003dc102c37e037550c552be24f025",
   "language": "Java",
   "lines": 52,
   "truncated": false,
   "block": 22,
   "row": 10600
  },
  {
   "path": "src/test/java/picard/arrays/illumina/CreateExtendedIlluminaManifestTest.java",
   "sha256": "2b7f6a543b684f25048c5241a74ba085b9e7946e087469e4afcf883a1a67ed8c",
   "language": "Java",
   "lines": 97,
   "truncated": false,
   "block": 22,
   "row": 11177
  },
  {
   "path": "src/test/java/picard/arrays/illumina/IlluminaAdpcFileWriterTest.java",
   "sha256": "de897411073e4dd324e4ce1a300e21b14f33c717a40ea2f89d2052b8e5fc48c7",
   "language": "Java",
   "lines": 33,
   "truncated": false,
   "block": 22,
   "row": 10452
  },
  {
   "path": "src/test/java/picard/arrays/illumina/IlluminaManifestTest.java",
   "sha256": "65f3fa36dea71a848d4aa57c2535b672b705e801d7cfd53d0d930de5e308d5ff",
   "language": "Java",
   "lines": 70,
   "truncated": false,
   "block": 22,
   "row": 11005
  },
  {
   "path": "src/test/java/picard/arrays/illumina/InfiniumDataFileTest.java",
   "sha256": "1c157cc05a55e1c5296c1f8b7d77a1a8ddf41b249e299294d93ceb4feefaf7e8",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10676
  },
  {
   "path": "src/test/java/picard/arrays/illumina/InfiniumNormalizationManifestTest.java",
   "sha256": "83b63805828dd27c9f659bc93505459dfd30a31411c0f4368c05b9fc3d9e76f4",
   "language": "Java",
   "lines": 35,
   "truncated": false,
   "block": 22,
   "row": 10409
  },
  {
   "path": "src/test/java/picard/arrays/illumina/InfiniumVcfFieldsTest.java",
   "sha256": "b09839ba16933b21a6f8d27db3d0e64dc0a0297d6cddffcfa0477fa7ffc073ae",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 11047
  },
  {
   "path": "src/test/java/picard/arrays/illumina/VcfToAdpcTest.java",
   "sha256": "85914926d4012a87073d7ae388155501bfd936fb9f7fd1da88b18612fe9a923c",
   "language": "Java",
   "lines": 94,
   "truncated": false,
   "block": 22,
   "row": 11257
  },
  {
   "path": "src/test/java/picard/cmdline/CommandLineProgramStartupErrorLogTest.java",
   "sha256": "c9eaa9d88b364337aac84833bc6daaafca19159cc3e733052889d73b874622f8",
   "language": "Java",
   "lines": 63,
   "truncated": false,
   "block": 22,
   "row": 10551
  },
  {
   "path": "src/test/java/picard/cmdline/CommandLineProgramTest.java",
   "sha256": "8b119161dd7618f8a75054700315891ea1a37ebae222a6113b37c2b1f3a2a0cf",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11188
  },
  {
   "path": "src/test/java/picard/cmdline/PicardCommandLineTest.java",
   "sha256": "8a246c4ddd69effb04796a36f9f340199a2c2988cb1602c1dc4d58eb923f5728",
   "language": "Java",
   "lines": 121,
   "truncated": false,
   "block": 22,
   "row": 11307
  },
  {
   "path": "src/test/java/picard/fastq/BamToBfqTest.java",
   "sha256": "3c38d61ec28fab51432727d0c9a56db1ec77e524297ec60da02e537404fa9632",
   "language": "Java",
   "lines": 48,
   "truncated": false,
   "block": 22,
   "row": 10538
  },
  {
   "path": "src/test/java/picard/fastq/Casava18ReadNameEncoderTest.java",
   "sha256": "9779949e25b41bd8c5625915ff29e76e1d4e6749d99f9bda157d8995a49b9cee",
   "language": "Java",
   "lines": 26,
   "truncated": false,
   "block": 22,
   "row": 10224
  },
  {
   "path": "src/test/java/picard/fingerprint/CalculateFingerprintMetricsTest.java",
   "sha256": "63fca2c57cfab21ac5b23a5af3a107aea09639422e1cd224008f6f5c58266e02",
   "language": "Java",
   "lines": 84,
   "truncated": false,
   "block": 22,
   "row": 10960
  },
  {
   "path": "src/test/java/picard/fingerprint/CheckFingerprintTest.java",
   "sha256": "82c3aa57f3c48b954a636809f9d4bc2e22c1c9ee01a01be9e928c242ab3f4a78",
   "language": "Java",
   "lines": 339,
   "truncated": false,
   "block": 22,
   "row": 11775
  },
  {
   "path": "src/test/java/picard/fingerprint/ClusterCrosscheckMetricsTest.java",
   "sha256": "ac9364e3b8581af277b86dd332163b05acfa57a00563841b9c1862d00c5bee42",
   "language": "Java",
   "lines": 87,
   "truncated": false,
   "block": 22,
   "row": 10914
  },
  {
   "path": "src/test/java/picard/fingerprint/ConvertHaplotypeDatabaseToVcfTest.java",
   "sha256": "1498bd92f47de0214f79e0d7162cbc2f00080fa1b5f632cbf1fae5d1c0324492",
   "language": "Java",
   "lines": 89,
   "truncated": false,
   "block": 22,
   "row": 10904
  },
  {
   "path": "src/test/java/picard/fingerprint/CrosscheckFingerprintsTest.java",
   "sha256": "fb33542fd6acbe931fbe7d410d1455c5b50cf3d9f8a2f6b95a33498f070694c3",
   "language": "Java",
   "lines": 1160,
   "truncated": false,
   "block": 22,
   "row": 11948
  },
  {
   "path": "src/test/java/picard/fingerprint/CrosscheckReadGroupFingerprintsTest.java",
   "sha256": "ee7a3d0a841d405462b1ddd01d03f0e1023b31408242d21a9dbedb66b131af03",
   "language": "Java",
   "lines": 287,
   "truncated": false,
   "block": 22,
   "row": 11742
  },
  {
   "path": "src/test/java/picard/fingerprint/FingerprintCheckerTest.java",
   "sha256": "0966cffff4f2cf4e27be99d79fa0dc6c5c30a67c466a88e7d9a0187f6fcd353e",
   "language": "Java",
   "lines": 574,
   "truncated": false,
   "block": 22,
   "row": 11899
  },
  {
   "path": "src/test/java/picard/fingerprint/FingerprintingTestUtils.java",
   "sha256": "a750bf38ebccd08afb7ccdd7d5850d703cace56d6821b535dcb81f7e08e7d24f",
   "language": "Java",
   "lines": 40,
   "truncated": false,
   "block": 22,
   "row": 10391
  },
  {
   "path": "src/test/java/picard/fingerprint/HaplotypeMapTest.java",
   "sha256": "5be95fc286f8b29b8663d831c40fecdf95b5bbe7b44679467c4108faa5eefc22",
   "language": "Java",
   "lines": 185,
   "truncated": false,
   "block": 22,
   "row": 11548
  },
  {
   "path": "src/test/java/picard/fingerprint/HaplotypeProbabilitiesTest.java",
   "sha256": "10303bff778e693aaa3fd4f1c1e836508b172b5980c7c85880656a2568bfb88c",
   "language": "Java",
   "lines": 226,
   "truncated": false,
   "block": 22,
   "row": 11658
  },
  {
   "path": "src/test/java/picard/fingerprint/HaplotypeProbabilityOfNormalGivenTumorTest.java",
   "sha256": "b1f5a0be99aee92bb81176c6031c6ac54bcbf4c5e772b971aed7e1b0a74f8ec4",
   "language": "Java",
   "lines": 55,
   "truncated": false,
   "block": 22,
   "row": 10729
  },
  {
   "path": "src/test/java/picard/fingerprint/LiftOverHaplotypeMapTest.java",
   "sha256": "ea035862c6b6948733081548f1097c7882935b13fb6317bd408bd2b2bec8d772",
   "language": "Java",
   "lines": 78,
   "truncated": false,
   "block": 22,
   "row": 10937
  },
  {
   "path": "src/test/java/picard/flow/FlowBasedKeyCodecUnitTest.java",
   "sha256": "7ca9d22795bd1f8e4d24bb97d91800710e13f8c15b8ce3fab299ada82e9a59cb",
   "language": "Java",
   "lines": 82,
   "truncated": false,
   "block": 22,
   "row": 10956
  },
  {
   "path": "src/test/java/picard/flow/FlowReadGroupInfoUnitTest.java",
   "sha256": "e8224f5c411e5017c8c124b132400a49352a4ae28c67c180fcf718a35b96732f",
   "language": "Java",
   "lines": 39,
   "truncated": false,
   "block": 22,
   "row": 10380
  },
  {
   "path": "src/test/java/picard/illumina/CheckIlluminaDirectoryTest.java",
   "sha256": "54fe162ecb8c37daa6ea3643d149196ae0904387e3129d93fd4120995514c1b6",
   "language": "Java",
   "lines": 426,
   "truncated": false,
   "block": 22,
   "row": 11824
  },
  {
   "path": "src/test/java/picard/illumina/CollectIlluminaBasecallingMetricsTest.java",
   "sha256": "12a9ef95c95e660b66cc79c7eb416cf466baa5702bae75349275068579f92c70",
   "language": "Java",
   "lines": 202,
   "truncated": false,
   "block": 22,
   "row": 11643
  },
  {
   "path": "src/test/java/picard/illumina/DistanceMetricTest.java",
   "sha256": "3e300356e08e0faa4e10370f5972e8dd67c3a304e51191c3098eec49553b77b9",
   "language": "Java",
   "lines": 94,
   "truncated": false,
   "block": 22,
   "row": 11162
  },
  {
   "path": "src/test/java/picard/illumina/ExtractIlluminaBarcodesTest.java",
   "sha256": "816fc7272707dad068b30aa4324bf828d34d0e032fd098ecf7c6c81a2fe29550",
   "language": "Java",
   "lines": 438,
   "truncated": false,
   "block": 22,
   "row": 11815
  },
  {
   "path": "src/test/java/picard/illumina/IlluminaBasecallsToFastqTest.java",
   "sha256": "f89dac42cb97d1b030ed0236675db4128c137ee5ee72779a86d09711229a9399",
   "language": "Java",
   "lines": 389,
   "truncated": false,
   "block": 22,
   "row": 11825
  },
  {
   "path": "src/test/java/picard/illumina/IlluminaBasecallsToSamAdapterClippingTest.java",
   "sha256": "54419605e7fc9da3d54d863ed0d7134609ac03d953a39fd8c5f01309cd790238",
   "language": "Java",
   "lines": 133,
   "truncated": false,
   "block": 22,
   "row": 11320
  },
  {
   "path": "src/test/java/picard/illumina/IlluminaBasecallsToSamTest.java",
   "sha256": "055dbb42c88c9664ab496f03200bd2bcd4b74491fc6afdbdc155456a0d22a797",
   "language": "Java",
   "lines": 332,
   "truncated": false,
   "block": 22,
   "row": 11821
  },
  {
   "path": "src/test/java/picard/illumina/IlluminaLaneMetricsCollectorTest.java",
   "sha256": "22d460a888fa2ce34381d97aa260d0a8e40687c56cdcc0108f62ff80ec75559d",
   "language": "Java",
   "lines": 151,
   "truncated": false,
   "block": 22,
   "row": 11487
  },
  {
   "path": "src/test/java/picard/illumina/ReadStructureTest.java",
   "sha256": "8eaeecd179584cbe16c18196982b954db6cdbb5926f7d0e685d92e4a639c7fe9",
   "language": "Java",
   "lines": 203,
   "truncated": false,
   "block": 22,
   "row": 11591
  },
  {
   "path": "src/test/java/picard/illumina/parser/BclParserTest.java",
   "sha256": "781ae34fc6f40787b330f9f8c29e617d104210ac36bba00b5d02984f05ae9e3f",
   "language": "Java",
   "lines": 461,
   "truncated": false,
   "block": 22,
   "row": 11863
  },
  {
   "path": "src/test/java/picard/illumina/parser/BinTdUtil.java",
   "sha256": "8f1545c2573c03d399891c8c54926589f14edde2fb94cc5e2cc1f835240e53d0",
   "language": "Java",
   "lines": 297,
   "truncated": false,
   "block": 22,
   "row": 11832
  },
  {
   "path": "src/test/java/picard/illumina/parser/CycleIlluminaFileMapTest.java",
   "sha256": "2c764d13e2b51536785943cd4ffc8f42253b63deb956be0f976a7b4160b4a54f",
   "language": "Java",
   "lines": 116,
   "truncated": false,
   "block": 22,
   "row": 11192
  },
  {
   "path": "src/test/java/picard/illumina/parser/FilterParserTest.java",
   "sha256": "3f12f793a8aac9d1d0aee982718fd06c4ee9bf7616d94c6ea82a0cb145dfd8a0",
   "language": "Java",
   "lines": 171,
   "truncated": false,
   "block": 22,
   "row": 11379
  },
  {
   "path": "src/test/java/picard/illumina/parser/IlluminaDataProviderFactoryTest.java",
   "sha256": "8b0a0dc664510d3d23f71e2dcb5fbd5e28ec53a4270716d7001b37902babf1d2",
   "language": "Java",
   "lines": 17,
   "truncated": false,
   "block": 22,
   "row": 10073
  },
  {
   "path": "src/test/java/picard/illumina/parser/IlluminaDataProviderTest.java",
   "sha256": "44ce740e2a1fbae485c171e1177575647fbc3847422afa6abe34d8cc70aa5ae5",
   "language": "Java",
   "lines": 265,
   "truncated": false,
   "block": 22,
   "row": 11657
  },
  {
   "path": "src/test/java/picard/illumina/parser/IlluminaFileUtilTest.java",
   "sha256": "72fe29742f7a0da3482225cf4e5f4893a6fb8607aa62fa2c4f40854816628ec7",
   "language": "Java",
   "lines": 693,
   "truncated": false,
   "block": 22,
   "row": 11898
  },
  {
   "path": "src/test/java/picard/illumina/parser/MultiTileBclFileFakerTest.java",
   "sha256": "7006abcfddaad1f238e64902decd2df20d860cc984158abd2f0367032c4a25d5",
   "language": "Java",
   "lines": 24,
   "truncated": false,
   "block": 22,
   "row": 10191
  },
  {
   "path": "src/test/java/picard/illumina/parser/PerTileParserTest.java",
   "sha256": "147a88e998a800aa69874922b77152772db2b3575196f31590e3fc6323a2a91b",
   "language": "Java",
   "lines": 174,
   "truncated": false,
   "block": 22,
   "row": 11262
  },
  {
   "path": "src/test/java/picard/illumina/parser/PerTilePerCycleParserTest.java",
   "sha256": "f19a888e5749094f06e9498ace76cd87e1eadd2d8af71723b5ff93621ebb3147",
   "language": "Java",
   "lines": 197,
   "truncated": false,
   "block": 22,
   "row": 11361
  },
  {
   "path": "src/test/java/picard/illumina/parser/PosParserTest.java",
   "sha256": "668ea6722642cbdec289a16bf697ac1acfd74efebac2e2c938e9cf99ef352fac",
   "language": "Java",
   "lines": 206,
   "truncated": false,
   "block": 22,
   "row": 11426
  },
  {
   "path": "src/test/java/picard/illumina/parser/TileMetricsUtilTest.java",
   "sha256": "dd8f74425d50ed8795207958f826e924148ccd504f3d8f2589bdffd9475c7a46",
   "language": "Java",
   "lines": 125,
   "truncated": false,
   "block": 22,
   "row": 11146
  },
  {
   "path": "src/test/java/picard/illumina/parser/fakers/BclFileFakerTest.java",
   "sha256": "30d51763b566d5df4236721782f20141c78387e2a39ca5a4b45018f0ce3f1293",
   "language": "Java",
   "lines": 59,
   "truncated": false,
   "block": 22,
   "row": 10707
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/AbstractIlluminaPositionFileReaderTest.java",
   "sha256": "251fea71f2fc2e932dd95f98f21fd6721412b377819fa05d5e9df433866a3e8b",
   "language": "Java",
   "lines": 156,
   "truncated": false,
   "block": 22,
   "row": 11295
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/BclReaderTest.java",
   "sha256": "717c55dcbfabf18da5309d0fa10e2a0c1f1bf93c30d7da022c919a7cd4f8369c",
   "language": "Java",
   "lines": 172,
   "truncated": false,
   "block": 22,
   "row": 11504
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/CbclReaderTest.java",
   "sha256": "195484670b11127b18f119eba659940be57f71037111f83e7e5289c222aff195",
   "language": "Java",
   "lines": 78,
   "truncated": false,
   "block": 22,
   "row": 10936
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/ClocsFileReaderTest.java",
   "sha256": "401f98ccf779db9544e86d83f19d85902c7becc4542029b2d5e6a31c27e6e2ce",
   "language": "Java",
   "lines": 160,
   "truncated": false,
   "block": 22,
   "row": 11418
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/FilterFileReaderTest.java",
   "sha256": "2a17ca596eb2b0e24123464a1ee374ab3a2e41d5e08003318b300e5be4c499f9",
   "language": "Java",
   "lines": 93,
   "truncated": false,
   "block": 22,
   "row": 10980
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/IlluminaFileUtilTest.java",
   "sha256": "9808e7b920b26ab1eb124351b9586adc211a398ddb6a57ff187ea38abeb5bbe4",
   "language": "Java",
   "lines": 11,
   "truncated": false,
   "block": 22,
   "row": 9940
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/LocsFileReaderTest.java",
   "sha256": "34d2b85dfc87affe90dc6413151dcf4eebd8761f15fc16dfadcdf5b02c930989",
   "language": "Java",
   "lines": 69,
   "truncated": false,
   "block": 22,
   "row": 10719
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/MMapBackedIteratorFactoryTest.java",
   "sha256": "98c9d46581adc3a673765aa2fad2189dc895f198434956657752e9709aaa3f76",
   "language": "Java",
   "lines": 208,
   "truncated": false,
   "block": 22,
   "row": 11463
  },
  {
   "path": "src/test/java/picard/illumina/parser/readers/PosFileReaderTest.java",
   "sha256": "6d1de30ab79b268802bb337fcbe079d0798293accc4283cf8fd73750941ffb58",
   "language": "Java",
   "lines": 91,
   "truncated": false,
   "block": 22,
   "row": 11029
  },
  {
   "path": "src/test/java/picard/metrics/CollectRrbsMetricsTest.java",
   "sha256": "46f63e5b3501934e08e7d0736cda17479a4d91def44f07e429fee25a7251838d",
   "language": "Java",
   "lines": 101,
   "truncated": false,
   "block": 22,
   "row": 11060
  },
  {
   "path": "src/test/java/picard/metrics/MetricBaseTest.java",
   "sha256": "9b2753d4ce0937de280a6df9e6458738fe34fecd5f25f45ee5b0bb8f1a55ae21",
   "language": "Java",
   "lines": 34,
   "truncated": false,
   "block": 22,
   "row": 10245
  },
  {
   "path": "src/test/java/picard/nio/HttpNioIntegrationTest.java",
   "sha256": "0fd7fbe83011bfda413db20bc9c8aadd7e2c938b712a9b517098128beefcb33d",
   "language": "Java",
   "lines": 17,
   "truncated": false,
   "block": 22,
   "row": 10026
  },
  {
   "path": "src/test/java/picard/nio/PicardBucketUtilsTest.java",
   "sha256": "05b6da8890c962fb39c3c17ccb2b22107949cca118e3a3b97141fda0c81d6fd2",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10533
  },
  {
   "path": "src/test/java/picard/nio/PicardHtsPathUnitTest.java",
   "sha256": "b04974ac07ec1a7c9260c1f301f61b5264e5492fabda6edcc793c9f091adad5f",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10951
  },
  {
   "path": "src/test/java/picard/pedigree/PedFileTest.java",
   "sha256": "2a7029b098bcb8a6518a67306e0a5ca7279a11b3458367d344f9028c40013e6d",
   "language": "Java",
   "lines": 58,
   "truncated": false,
   "block": 22,
   "row": 10609
  },
  {
   "path": "src/test/java/picard/pedigree/SexTest.java",
   "sha256": "e16a49d733b8d7dce8de1f7c3ca66b71afb4c736cd6aa4f3939225240077cd62",
   "language": "Java",
   "lines": 57,
   "truncated": false,
   "block": 22,
   "row": 10414
  },
  {
   "path": "src/test/java/picard/reference/NonNFastaSizeTest.java",
   "sha256": "5ab6cf6464dbac34c5096f27b4a18aa79bae25535cfce069d47485b6890c31fd",
   "language": "Java",
   "lines": 87,
   "truncated": false,
   "block": 22,
   "row": 10871
  },
  {
   "path": "src/test/java/picard/sam/AbstractAlignmentMergerTest.java",
   "sha256": "5becb2b1dded090ff0d59240918d90af53938b05a6d861c801b5f8e062b39f73",
   "language": "Java",
   "lines": 818,
   "truncated": false,
   "block": 22,
   "row": 11940
  },
  {
   "path": "src/test/java/picard/sam/AddCommentsToBamTest.java",
   "sha256": "c6569c3728a00f91599deba027c6c3869232d9577b6f7e25600bdabfcf7bfbdd",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 10862
  },
  {
   "path": "src/test/java/picard/sam/AddOATagTest.java",
   "sha256": "ffbc728d73f113330c62fb830949120bbf094baad5395b0a7a28c2559a1ad5c7",
   "language": "Java",
   "lines": 108,
   "truncated": false,
   "block": 22,
   "row": 11106
  },
  {
   "path": "src/test/java/picard/sam/BuildBamIndexTest.java",
   "sha256": "9dd948aa366f239bee56148f71c84dc2483a8b27e02631dc2e14d5657006c1c2",
   "language": "Java",
   "lines": 72,
   "truncated": false,
   "block": 22,
   "row": 10784
  },
  {
   "path": "src/test/java/picard/sam/CleanSamTest.java",
   "sha256": "d7cab237eba1230f9a84e9c4ce133d8693f1952860c93d66b6ab4b7a18ca8f50",
   "language": "Java",
   "lines": 107,
   "truncated": false,
   "block": 22,
   "row": 11198
  },
  {
   "path": "src/test/java/picard/sam/CompareSAMsTest.java",
   "sha256": "1ff698f7b5bdcd78fcdf01c3414b9cc06a229c4e47bdc5cc14265998088fb7a9",
   "language": "Java",
   "lines": 197,
   "truncated": false,
   "block": 22,
   "row": 11659
  },
  {
   "path": "src/test/java/picard/sam/CramCompatibilityTest.java",
   "sha256": "55a299a46b9759a2e9a2376e512299703f9f05e19626a4ff115831eb0541b5a1",
   "language": "Java",
   "lines": 284,
   "truncated": false,
   "block": 22,
   "row": 11747
  },
  {
   "path": "src/test/java/picard/sam/CreateSequenceDictionaryTest.java",
   "sha256": "9a708dbdb70a58428691540b6234c1361e5c460f0e62c74d9f8ddbe789556ee3",
   "language": "Java",
   "lines": 334,
   "truncated": false,
   "block": 22,
   "row": 11769
  },
  {
   "path": "src/test/java/picard/sam/DownsampleSamTest.java",
   "sha256": "2ad5711cab7e272a94551d502846af391f0cf667d30694a10707a53d7c985317",
   "language": "Java",
   "lines": 288,
   "truncated": false,
   "block": 22,
   "row": 11732
  },
  {
   "path": "src/test/java/picard/sam/DuplicationMetricsTest.java",
   "sha256": "e03dacc02cfa7850a5417d7ce199d022e62a36d8df03f342783efa287a9472fb",
   "language": "Java",
   "lines": 101,
   "truncated": false,
   "block": 22,
   "row": 11099
  },
  {
   "path": "src/test/java/picard/sam/FastqToSamTest.java",
   "sha256": "6110f92d7539c90ad297366cf83814226bb38179d726d9a778de61146bc39834",
   "language": "Java",
   "lines": 391,
   "truncated": false,
   "block": 22,
   "row": 11793
  },
  {
   "path": "src/test/java/picard/sam/FilterSamReadsTest.java",
   "sha256": "38dd29d5a541a539af3ae5c2c967bea1cb7efc6704c046807d58494ff69288e6",
   "language": "Java",
   "lines": 375,
   "truncated": false,
   "block": 22,
   "row": 11778
  },
  {
   "path": "src/test/java/picard/sam/FixMateInformationTest.java",
   "sha256": "0888be6d779f1f487b0a7a5c00ba1f2d2ef80343e5d7112e8bf13fe7e8d0b7c2",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10717
  },
  {
   "path": "src/test/java/picard/sam/GatherBamFilesTest.java",
   "sha256": "58bce4383444a286549f79d83a816e9878a8fbf811cb0bff5e961af2a5494959",
   "language": "Java",
   "lines": 70,
   "truncated": false,
   "block": 22,
   "row": 10781
  },
  {
   "path": "src/test/java/picard/sam/MergeBamAlignmentTest.java",
   "sha256": "b8c067e3f32671f4d90b6d71156f046210d89a8f9d96b783a3fdbcca3b6e94ac",
   "language": "Java",
   "lines": 2095,
   "truncated": false,
   "block": 22,
   "row": 11949
  },
  {
   "path": "src/test/java/picard/sam/MergeSamFilesTest.java",
   "sha256": "e49d9e3c328132d793925edd7dd43b545b0f36ce7feb831d642adda9debfe9cd",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10883
  },
  {
   "path": "src/test/java/picard/sam/PipedDataTest.java",
   "sha256": "787783aa2f24e9f07eefe00c8ee8e05b39f292bb2a46c3e043237dd27cf63941",
   "language": "Java",
   "lines": 111,
   "truncated": false,
   "block": 22,
   "row": 11128
  },
  {
   "path": "src/test/java/picard/sam/PositionBasedDownsampleSamTest.java",
   "sha256": "c4a1800c3d7b0ee593daf8f3ce376c3491fbaa91ff48adf14411076a7c3e5d2a",
   "language": "Java",
   "lines": 228,
   "truncated": false,
   "block": 22,
   "row": 11519
  },
  {
   "path": "src/test/java/picard/sam/ReorderSamTest.java",
   "sha256": "7b03cb88a4209e82e919afaf2a63f91ea6b965865efcf0bf64ab79fd5c19a427",
   "language": "Java",
   "lines": 203,
   "truncated": false,
   "block": 22,
   "row": 11549
  },
  {
   "path": "src/test/java/picard/sam/RevertSamTest.java",
   "sha256": "c4caaa851fb4c88597bfbbc6b51c6b28e45eb0e8d71c1f895ab933333ae18471",
   "language": "Java",
   "lines": 821,
   "truncated": false,
   "block": 22,
   "row": 11926
  },
  {
   "path": "src/test/java/picard/sam/SamErrorMetric/BaseErrorAggregationTest.java",
   "sha256": "2bdcc140dc34db941da0c5bb6dd7f03c261acfd309ea8707e02b38e53eb96e01",
   "language": "Java",
   "lines": 170,
   "truncated": false,
   "block": 22,
   "row": 11525
  },
  {
   "path": "src/test/java/picard/sam/SamErrorMetric/BaseErrorCalculationTest.java",
   "sha256": "8ecda3486cbd66ed863855132514948bea2419ce6514e648541f65fd6bcd21d1",
   "language": "Java",
   "lines": 155,
   "truncated": false,
   "block": 22,
   "row": 11416
  },
  {
   "path": "src/test/java/picard/sam/SamErrorMetric/CollectSamErrorMetricsTest.java",
   "sha256": "3a36400c45b2aac35c032dbffb6c9f961cb38137266570294571d86e967fd394",
   "language": "Java",
   "lines": 713,
   "truncated": false,
   "block": 22,
   "row": 11927
  },
  {
   "path": "src/test/java/picard/sam/SamErrorMetric/ReadBaseStratificationTest.java",
   "sha256": "253accd7cf679280a68034094437878993ce5bec6f688c8812693854a31c4d95",
   "language": "Java",
   "lines": 545,
   "truncated": false,
   "block": 22,
   "row": 11920
  },
  {
   "path": "src/test/java/picard/sam/SamFormatConverterTest.java",
   "sha256": "97a05b3aef6ac94faeadaf6dd3f508206ed2728db516d74f08049c3e2d5f3dc3",
   "language": "Java",
   "lines": 90,
   "truncated": false,
   "block": 22,
   "row": 10995
  },
  {
   "path": "src/test/java/picard/sam/SamToFastqTest.java",
   "sha256": "514f09f0ce3928a8bc9999139fb6cda86b98bebd296eca837dd9c5c7ad9ee418",
   "language": "Java",
   "lines": 480,
   "truncated": false,
   "block": 22,
   "row": 11851
  },
  {
   "path": "src/test/java/picard/sam/SamToFastqWithTagsTest.java",
   "sha256": "b3c19e689e2d83c5d6f0bb7a183bcbcddd405e21768628dfd927038c42e1485e",
   "language": "Java",
   "lines": 232,
   "truncated": false,
   "block": 22,
   "row": 11616
  },
  {
   "path": "src/test/java/picard/sam/SetNmMdAndUqTagsTest.java",
   "sha256": "c85972c99a407a8cff345227186df057ccc657d9351184152002165159879057",
   "language": "Java",
   "lines": 110,
   "truncated": false,
   "block": 22,
   "row": 11054
  },
  {
   "path": "src/test/java/picard/sam/SortSamTest.java",
   "sha256": "ed15274907476d10770198566124ed1d86e3fed21bfd001141f2721b7a14d10a",
   "language": "Java",
   "lines": 24,
   "truncated": false,
   "block": 22,
   "row": 10131
  },
  {
   "path": "src/test/java/picard/sam/SplitSamByLibraryTest.java",
   "sha256": "4bdcce782c26f942ac4a0bbccaeee79dfc36d111e3f8c099fd9eda704fc808db",
   "language": "Java",
   "lines": 112,
   "truncated": false,
   "block": 22,
   "row": 11081
  },
  {
   "path": "src/test/java/picard/sam/SplitSamByNumberOfReadsTest.java",
   "sha256": "d91a843cf02a5e3408d3b4014371beb04dff565a19d724226c11053e0d01e0d8",
   "language": "Java",
   "lines": 275,
   "truncated": false,
   "block": 22,
   "row": 11625
  },
  {
   "path": "src/test/java/picard/sam/ValidateSamFileTest.java",
   "sha256": "8abeb824c79f8068d833792f0b6a893bac9cdf5db0f4c329683ac409049718f3",
   "language": "Java",
   "lines": 66,
   "truncated": false,
   "block": 22,
   "row": 10778
  },
  {
   "path": "src/test/java/picard/sam/ViewSamTest.java",
   "sha256": "a3977fa3d5b745a8cfc35e6157309d962bdcb90ea78496d7fe5624ad33d50b3f",
   "language": "Java",
   "lines": 136,
   "truncated": false,
   "block": 22,
   "row": 11332
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTest.java",
   "sha256": "7d97795dc575a225c42331ab17673acbe58269f05387e61ffa607b7d332be9e2",
   "language": "Java",
   "lines": 752,
   "truncated": false,
   "block": 22,
   "row": 11925
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTester.java",
   "sha256": "8f1f13ce3b6238ade001d19af3db5e7bb91d26fb1c3319e7199bcedb6f12785a",
   "language": "Java",
   "lines": 253,
   "truncated": false,
   "block": 22,
   "row": 11699
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/AsIsCollectDuplicateMetricsTest.java",
   "sha256": "ddef171713d4cdde3afe2f5d459c18edfcce80f621ca4ff43db5617a18a08637",
   "language": "Java",
   "lines": 10,
   "truncated": false,
   "block": 22,
   "row": 9965
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/AsIsMarkDuplicatesTest.java",
   "sha256": "0927c73207f7633293cbb620d4a04fae842de4e70ebde418a87388aa8abdc5c0",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 11033
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/BySumOfBaseQAndInOriginalOrderMDTester.java",
   "sha256": "390f652e873fa477cada1cdc207ca6654fb4eed7c5056e13b6bed1edb8af577e",
   "language": "Java",
   "lines": 44,
   "truncated": false,
   "block": 22,
   "row": 10484
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/CheckDuplicateMarkingTest.java",
   "sha256": "6e7c6542070e018ed227c6fcf287c9632d97523196619d60a401b2e523b7ad85",
   "language": "Java",
   "lines": 34,
   "truncated": false,
   "block": 22,
   "row": 10341
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/CollectDuplicateMetricsTest.java",
   "sha256": "261c4f67443f24a08bfb4d2c408ed1fc67688774c71260b5b92c2f8fff2a6a6a",
   "language": "Java",
   "lines": 36,
   "truncated": false,
   "block": 22,
   "row": 10422
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/CollectDuplicateMetricsTester.java",
   "sha256": "792a6a365b28ddc5ae8b86ec9b11a230f526028cb9c824afb83707bea03637b8",
   "language": "Java",
   "lines": 91,
   "truncated": false,
   "block": 22,
   "row": 10912
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/ElcHashBasedDuplicatesFinderTest.java",
   "sha256": "19c598ecf460991a7e2f7694e10e6fea250fe05e05585ebd3375420248d6f4e0",
   "language": "Java",
   "lines": 182,
   "truncated": false,
   "block": 22,
   "row": 11413
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java",
   "sha256": "8bf926ae9146abb28ada0cfa8fd545a827999a38d335e40772c38028cd3c28f6",
   "language": "Java",
   "lines": 208,
   "truncated": false,
   "block": 22,
   "row": 11508
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java",
   "sha256": "2317cb1270ff2fa66fbbe47266e9c1ce97a8a72f4fe5e8ac262614d55e6683f6",
   "language": "Java",
   "lines": 187,
   "truncated": false,
   "block": 22,
   "row": 11465
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicateWithMissingBarcodeTest.java",
   "sha256": "2a39147e3ea156aa6398fabbc03691e717db70309d304472ee4186f8e8b80f48",
   "language": "Java",
   "lines": 42,
   "truncated": false,
   "block": 22,
   "row": 10354
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicateWithMissingReadOneBarcodeTest.java",
   "sha256": "f1e556a51878c5533703a8f28e32caf5cb197d2896b0d6e342436696b5b24770",
   "language": "Java",
   "lines": 22,
   "truncated": false,
   "block": 22,
   "row": 10062
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicateWithMissingReadTwoBarcodeTest.java",
   "sha256": "92b1f9881966584109da09deb4caf2b420618acbd0c8c5503068eedc247d178d",
   "language": "Java",
   "lines": 21,
   "truncated": false,
   "block": 22,
   "row": 10045
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicateWithMissingSampleBarcodeTest.java",
   "sha256": "718c93d2df1b024af69e07912c9fcf12b14f8ea9a35b7aed87b602dcd6925428",
   "language": "Java",
   "lines": 21,
   "truncated": false,
   "block": 22,
   "row": 10036
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesForFlowHelperTest.java",
   "sha256": "6c28dc6844de13b14dd472296a16b9262b73c8d1d73026e1c0dd6fd3a3a179f2",
   "language": "Java",
   "lines": 403,
   "truncated": false,
   "block": 22,
   "row": 11831
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesSetSizeHistogramTest.java",
   "sha256": "dda55ec0b13a92e6fec9ce1ec2c011187ddf1a5d30471d10f6a19eb57fadf546",
   "language": "Java",
   "lines": 113,
   "truncated": false,
   "block": 22,
   "row": 11358
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesTagRepresentativeReadIndexTest.java",
   "sha256": "fa2f93d11dea1bc99a9987b62e31deac0aa490d603a8274b405862c49d75ff35",
   "language": "Java",
   "lines": 115,
   "truncated": false,
   "block": 22,
   "row": 11394
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesTagRepresentativeReadIndexTester.java",
   "sha256": "5ca3143d2fb611ecb329268229b70da5eeb08c4d94806f6607d565e634af49b8",
   "language": "Java",
   "lines": 99,
   "truncated": false,
   "block": 22,
   "row": 11052
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java",
   "sha256": "736ae327e09f59b045263febc7f3a3a9d4dbca3651fb89892296d4fbdc2129d0",
   "language": "Java",
   "lines": 414,
   "truncated": false,
   "block": 22,
   "row": 11869
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesTestQueryNameSorted.java",
   "sha256": "bd25f91a3a783873130ed2464a5d077d8480398249881f5bfa6ece9126686a08",
   "language": "Java",
   "lines": 70,
   "truncated": false,
   "block": 22,
   "row": 10859
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesTester.java",
   "sha256": "df54b5edf7be9f96a90ff59e5e45e609ba5f66de8035516a825bc91c026d56cf",
   "language": "Java",
   "lines": 45,
   "truncated": false,
   "block": 22,
   "row": 10555
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigarTest.java",
   "sha256": "d3fa2366556b03635eba06ff853ad6c01f9c8bc0dee222a732b21524cac3c81a",
   "language": "Java",
   "lines": 129,
   "truncated": false,
   "block": 22,
   "row": 11380
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigarTester.java",
   "sha256": "418a50e35ce2f855d79aa8e23e216e14fc80c0f25e8a423a7e2b52382185fb03",
   "language": "Java",
   "lines": 49,
   "truncated": false,
   "block": 22,
   "row": 10610
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/QuerySortedMarkDuplicatesTester.java",
   "sha256": "e7c37c6586e3d1b3252026767e96ca3519fcee7d38341341b356a5e1ce0b51a4",
   "language": "Java",
   "lines": 51,
   "truncated": false,
   "block": 22,
   "row": 10631
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigarTest.java",
   "sha256": "432bce0483a5c36251f0365320b3aa0156483f2619833e1f8b23174743456b18",
   "language": "Java",
   "lines": 54,
   "truncated": false,
   "block": 22,
   "row": 10622
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigarTester.java",
   "sha256": "ab87709774fd4670b48e612599917655eb6e47689fe75f152ac884be0c83fe1c",
   "language": "Java",
   "lines": 48,
   "truncated": false,
   "block": 22,
   "row": 10520
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java",
   "sha256": "63013139bacdb1d36211c48339d2c715025ebb37c5a876370905200d01413c48",
   "language": "Java",
   "lines": 506,
   "truncated": false,
   "block": 22,
   "row": 11901
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTester.java",
   "sha256": "b377f7d844002294f5bae00bdc1655a85af495d0fb898c990efb8af520282f63",
   "language": "Java",
   "lines": 257,
   "truncated": false,
   "block": 22,
   "row": 11681
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/UmiUtilTest.java",
   "sha256": "f37da9828c7ea52feb491e3763e1dc2574429bfc7da208cba87f7631e86c9167",
   "language": "Java",
   "lines": 127,
   "truncated": false,
   "block": 22,
   "row": 11337
  },
  {
   "path": "src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java",
   "sha256": "1c99656352431b649d4126b0573d5c397162094271a618f26f13cc4d3df3415b",
   "language": "Java",
   "lines": 244,
   "truncated": false,
   "block": 22,
   "row": 11626
  },
  {
   "path": "src/test/java/picard/sam/testers/CleanSamTester.java",
   "sha256": "74f06a9951c307f12bda64264f318881993e5c76b6ef69b95ab2edf47481a5ce",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10702
  },
  {
   "path": "src/test/java/picard/sam/testers/SamFileTester.java",
   "sha256": "067ff7bcd2f2a075c16af5ec342441747f7a34bf25452d6a8da738fc2e5b7e5b",
   "language": "Java",
   "lines": 434,
   "truncated": false,
   "block": 22,
   "row": 11841
  },
  {
   "path": "src/test/java/picard/sam/testers/ValidateSamTester.java",
   "sha256": "ef05040c60298a10150d4c00e240f65a99f63af617162708b05911b2d77f9e5a",
   "language": "Java",
   "lines": 34,
   "truncated": false,
   "block": 22,
   "row": 10279
  },
  {
   "path": "src/test/java/picard/sam/util/PrimaryAlignmentKeyTest.java",
   "sha256": "b7be18c97f6052504789ea2b104ea1a3e08613b0f5f37b7e4d4a1b33e5a36c3d",
   "language": "Java",
   "lines": 118,
   "truncated": false,
   "block": 22,
   "row": 11193
  },
  {
   "path": "src/test/java/picard/sam/util/ReadNameParserTests.java",
   "sha256": "9633f4abefa65978a4ecc20cab4d66e89b16286033507038fb089f372f26dccf",
   "language": "Java",
   "lines": 175,
   "truncated": false,
   "block": 22,
   "row": 11506
  },
  {
   "path": "src/test/java/picard/sam/util/SamComparisonTest.java",
   "sha256": "51bed5f79b60fd7a9585305b84c217d9a51217f13c75a8080ac8a75fe2465555",
   "language": "Java",
   "lines": 166,
   "truncated": false,
   "block": 22,
   "row": 11578
  },
  {
   "path": "src/test/java/picard/sam/util/SamTestUtil.java",
   "sha256": "b39f6e7e89257c7b6c7fcc0fb673bbf7ccb742cafdac0807500e017827c4c2dd",
   "language": "Java",
   "lines": 26,
   "truncated": false,
   "block": 22,
   "row": 10168
  },
  {
   "path": "src/test/java/picard/util/AccumulateQualityYieldMetricsTest.java",
   "sha256": "1b8fc8230d3e2be454f3e9578e0bbe917889568bbc037f9160f2c8e9094adc14",
   "language": "Java",
   "lines": 78,
   "truncated": false,
   "block": 22,
   "row": 10902
  },
  {
   "path": "src/test/java/picard/util/AlleleSubsettingUtilsTest.java",
   "sha256": "02fae5af5b562e4251c5d4ee20e97d17d454c78c34484d86dc44234eae5ce303",
   "language": "Java",
   "lines": 165,
   "truncated": false,
   "block": 22,
   "row": 11618
  },
  {
   "path": "src/test/java/picard/util/BedToIntervalListTest.java",
   "sha256": "a0b216dfd5c88105437c0a1af6c42ec23612bf0e14411543795e80f04df9a315",
   "language": "Java",
   "lines": 131,
   "truncated": false,
   "block": 22,
   "row": 11181
  },
  {
   "path": "src/test/java/picard/util/ClippingUtilityTest.java",
   "sha256": "52dbcb3cf5b8e77083ec8d5d2a3dac86f365354ebfee97990755c330fc8660d2",
   "language": "Java",
   "lines": 380,
   "truncated": false,
   "block": 22,
   "row": 11822
  },
  {
   "path": "src/test/java/picard/util/DelimitedTextFileWithHeaderIteratorTest.java",
   "sha256": "082d900cb72577a57b27a16a569257ca9c82f791118c30af3a7a48c4e3848189",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 10930
  },
  {
   "path": "src/test/java/picard/util/EditDistanceQueriesTest.java",
   "sha256": "1b1f62c6f995911a414fe63e5cd4156bd9f725cfc33c16516fe3d943c41750e4",
   "language": "Java",
   "lines": 89,
   "truncated": false,
   "block": 22,
   "row": 10899
  },
  {
   "path": "src/test/java/picard/util/FifoBufferTest.java",
   "sha256": "98903d6f74c6ca77c60223e1e5ba56150c3342e2f727012f5b00e9c3ae2ede5d",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10747
  },
  {
   "path": "src/test/java/picard/util/GCloudTestUtils.java",
   "sha256": "3b0e1576ffe652b39680b666755eb2a09b1497434de4cf5c923ba1b72bad862e",
   "language": "Java",
   "lines": 65,
   "truncated": false,
   "block": 22,
   "row": 10872
  },
  {
   "path": "src/test/java/picard/util/GCloudTestUtilsUnitTest.java",
   "sha256": "5b2d792e8d12b80e40c480e000f8b2d0c9e1fa9abfee28050184a54f471a15e9",
   "language": "Java",
   "lines": 37,
   "truncated": false,
   "block": 22,
   "row": 10334
  },
  {
   "path": "src/test/java/picard/util/GraphUtilsTest.java",
   "sha256": "b18bf3f2f5f9b9f71b3dbd40cea824398eef3820ad28afc98b2f4ee39d523cf2",
   "language": "Java",
   "lines": 111,
   "truncated": false,
   "block": 22,
   "row": 10878
  },
  {
   "path": "src/test/java/picard/util/IlluminaUtilTest.java",
   "sha256": "82760f12f111072ef71248c1786007f2817119dac5bcdea8fdcea24866e74ddc",
   "language": "Java",
   "lines": 87,
   "truncated": false,
   "block": 22,
   "row": 10875
  },
  {
   "path": "src/test/java/picard/util/IntervalListScattererTest.java",
   "sha256": "fe0bbab6d6499c998515089f274e3dd14bfd530c9cbdcd4b4d7c9df42383f9d8",
   "language": "Java",
   "lines": 465,
   "truncated": false,
   "block": 22,
   "row": 11845
  },
  {
   "path": "src/test/java/picard/util/IntervalListToBedTest.java",
   "sha256": "84229774449508d305544899002f97c7b3cefa493e5765815b3567edf88dc20b",
   "language": "Java",
   "lines": 67,
   "truncated": false,
   "block": 22,
   "row": 10776
  },
  {
   "path": "src/test/java/picard/util/IntervalListToolsTest.java",
   "sha256": "96eb9e0f5a638cd9d9de39ec82d2089bd1952aff145f7727acb4cd7b80be3497",
   "language": "Java",
   "lines": 579,
   "truncated": false,
   "block": 22,
   "row": 11895
  },
  {
   "path": "src/test/java/picard/util/LiftoverUtilsTest.java",
   "sha256": "7b3cc0b661a0aeea9c6da0ab10c6bd1b6a620a238b90673745380ed94724e76a",
   "language": "Java",
   "lines": 124,
   "truncated": false,
   "block": 22,
   "row": 11202
  },
  {
   "path": "src/test/java/picard/util/LiftoverVcfTest.java",
   "sha256": "cb45fd280841921945c4bc40a1c3399f8ec1fb1fb9e8d56a758d25cbb6fe3f2b",
   "language": "Java",
   "lines": 1424,
   "truncated": false,
   "block": 22,
   "row": 11947
  },
  {
   "path": "src/test/java/picard/util/MathUtilTest.java",
   "sha256": "15939a576e39910e9be96c442fa35e35ee944f28b1785033a602e52c37d101d4",
   "language": "Java",
   "lines": 289,
   "truncated": false,
   "block": 22,
   "row": 11646
  },
  {
   "path": "src/test/java/picard/util/MergingIteratorTest.java",
   "sha256": "863101b890f83b293dd2e89fcd393875c218aaf230dff11cd4a1942607fd121c",
   "language": "Java",
   "lines": 177,
   "truncated": false,
   "block": 22,
   "row": 11199
  },
  {
   "path": "src/test/java/picard/util/MiscTest.java",
   "sha256": "6b117779bdf6516392c4ef2b1bfbfff02a26366acd9e296745ff2cee3fed3bef",
   "language": "Java",
   "lines": 26,
   "truncated": false,
   "block": 22,
   "row": 10107
  },
  {
   "path": "src/test/java/picard/util/QuerySortedReadPairIteratorUtilTest.java",
   "sha256": "d6a7d2478ec516286440df203ff5d11e62d9037ba6334285b823d4b9f1c248ed",
   "language": "Java",
   "lines": 93,
   "truncated": false,
   "block": 22,
   "row": 11036
  },
  {
   "path": "src/test/java/picard/util/RExecutorTest.java",
   "sha256": "74ddbbe45d8eeecb7bef6bac84fbb597c4f19f68e9f8de70f4d881dc60f466be",
   "language": "Java",
   "lines": 49,
   "truncated": false,
   "block": 22,
   "row": 10481
  },
  {
   "path": "src/test/java/picard/util/ScatterIntervalsByNsTest.java",
   "sha256": "9aa0c9b0af7a4ca1bfbd886f6e5f98cceebfa8bfbb01c7b98d66ecc4d9bea746",
   "language": "Java",
   "lines": 163,
   "truncated": false,
   "block": 22,
   "row": 11356
  },
  {
   "path": "src/test/java/picard/util/SequenceDictionaryUtilsTest.java",
   "sha256": "582858fc8eb5903e319f3418f918102d2a802c851546e6cd6a9e3b909e06a5d2",
   "language": "Java",
   "lines": 81,
   "truncated": false,
   "block": 22,
   "row": 10807
  },
  {
   "path": "src/test/java/picard/util/TabbedTextFileWithHeaderParserTest.java",
   "sha256": "0cef5319cd7a63b73f81f03c93bb6d381de142b36d3e58b7c8d74e84099729e9",
   "language": "Java",
   "lines": 94,
   "truncated": false,
   "block": 22,
   "row": 10850
  },
  {
   "path": "src/test/java/picard/util/TestNGUtil.java",
   "sha256": "88b8bb5ee6cf89697450c22d02e482d8261bc5b8ede0d7de196967f4c90bb8ee",
   "language": "Java",
   "lines": 163,
   "truncated": false,
   "block": 22,
   "row": 11392
  },
  {
   "path": "src/test/java/picard/util/TextFileParsersTest.java",
   "sha256": "7cf4850793820bfb9e91553e62da7643cd47b43a3b0a3efb0d8a36877899e22c",
   "language": "Java",
   "lines": 314,
   "truncated": false,
   "block": 22,
   "row": 11707
  },
  {
   "path": "src/test/java/picard/util/UnsignedTypeUtilTest.java",
   "sha256": "f028a525c09fd826193c992d73be119d5a2d223c6d8110014120e934a68ab902",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10694
  },
  {
   "path": "src/test/java/picard/util/help/DocumentationGenerationIntegrationTest.java",
   "sha256": "e3231be2eabd7ff65313ffc922f3bf59c91307fa9676ab595e570480c131ce08",
   "language": "Java",
   "lines": 70,
   "truncated": false,
   "block": 22,
   "row": 10764
  },
  {
   "path": "src/test/java/picard/vcf/AbstractVcfMergingClpTester.java",
   "sha256": "4296ab48c51ce9aa358a170fc4c4940f49abb407affc04d88e1533dfff34c325",
   "language": "Java",
   "lines": 183,
   "truncated": false,
   "block": 22,
   "row": 11503
  },
  {
   "path": "src/test/java/picard/vcf/AccumulateVariantCallingMetricsTest.java",
   "sha256": "ac2dc438da7e2004ef6e46de7c7467ee6e38e1ed5a7aad5c61fdfaf47e8ed548",
   "language": "Java",
   "lines": 173,
   "truncated": false,
   "block": 22,
   "row": 11470
  },
  {
   "path": "src/test/java/picard/vcf/ByIntervalListVariantContextIteratorTest.java",
   "sha256": "39914ced96e46a1d14001a730100edc61f0f9252d6b23f3a37d4d8d3542ab389",
   "language": "Java",
   "lines": 141,
   "truncated": false,
   "block": 22,
   "row": 11318
  },
  {
   "path": "src/test/java/picard/vcf/CallingMetricAccumulatorTest.java",
   "sha256": "bd9bef57b11dd60f07f45f98699b5a030e6046765ef1855f92109cac37da1f7b",
   "language": "Java",
   "lines": 73,
   "truncated": false,
   "block": 22,
   "row": 10819
  },
  {
   "path": "src/test/java/picard/vcf/CollectVariantCallingMetricsTest.java",
   "sha256": "39b40c102e4f41f45e1b442d1d8b59b83cf58b65e7f1976b0647ed4d6816d913",
   "language": "Java",
   "lines": 226,
   "truncated": false,
   "block": 22,
   "row": 11651
  },
  {
   "path": "src/test/java/picard/vcf/FixVcfHeaderTest.java",
   "sha256": "1ae6fed3fe58a4c55f72aef22389fbb9046fbd422b0a7abe4de6ed17efb3fa8d",
   "language": "Java",
   "lines": 125,
   "truncated": false,
   "block": 22,
   "row": 11294
  },
  {
   "path": "src/test/java/picard/vcf/GatherVcfsTest.java",
   "sha256": "32017c05c6bf1d371926426f5485ccb55453cc31c8950179da7fe0ed89cd21b0",
   "language": "Java",
   "lines": 89,
   "truncated": false,
   "block": 22,
   "row": 11122
  },
  {
   "path": "src/test/java/picard/vcf/GenotypeConcordanceGA4GHSchemeTest.java",
   "sha256": "047a44334cb5a92f559271f6baae7dca08407f6bb935dd18feb70b33dc964bd9",
   "language": "Java",
   "lines": 157,
   "truncated": false,
   "block": 22,
   "row": 11665
  },
  {
   "path": "src/test/java/picard/vcf/GenotypeConcordanceGA4GHSchemeWithMissingTest.java",
   "sha256": "0930373a6108ecc3df2faf4f38b3bb605b004ba8d63668f5b8290782789e00b0",
   "language": "Java",
   "lines": 79,
   "truncated": false,
   "block": 22,
   "row": 11175
  },
  {
   "path": "src/test/java/picard/vcf/GenotypeConcordanceTest.java",
   "sha256": "f7c0aa7739823e3d1051f5d5f20bc0b22f5a8642bcc319e0739af89ff4dd6f06",
   "language": "Java",
   "lines": 718,
   "truncated": false,
   "block": 22,
   "row": 11931
  },
  {
   "path": "src/test/java/picard/vcf/MakeVcfSampleNameMapTest.java",
   "sha256": "e390d46013b8e01ac107c4ba268981b7e44f2ba74812edc708fff49e0669c8d7",
   "language": "Java",
   "lines": 55,
   "truncated": false,
   "block": 22,
   "row": 10545
  },
  {
   "path": "src/test/java/picard/vcf/MendelianViolations/FindMendelianViolationsTest.java",
   "sha256": "3f2153bc4f236e019a125dc1886a445dfa0b6c0a62beb62ec142eb74d3f18350",
   "language": "Java",
   "lines": 162,
   "truncated": false,
   "block": 22,
   "row": 11442
  },
  {
   "path": "src/test/java/picard/vcf/MergeVcfsTest.java",
   "sha256": "bdde763e70d0a892b0e7b9f8952a9b3c60e440ce76ddc11dc827b66d3d65d59b",
   "language": "Java",
   "lines": 40,
   "truncated": false,
   "block": 22,
   "row": 10314
  },
  {
   "path": "src/test/java/picard/vcf/SamTestUtils.java",
   "sha256": "8b8ffa702f85b150fda6b45042d1d7f998568cdd021051b1a0c35115e0dc4656",
   "language": "Java",
   "lines": 55,
   "truncated": false,
   "block": 22,
   "row": 10696
  },
  {
   "path": "src/test/java/picard/vcf/SortVcfsTest.java",
   "sha256": "332ec4247b6e9d2bf6e4cc54958434915679c4053a8ba1c8ceb5e306df6d2b84",
   "language": "Java",
   "lines": 119,
   "truncated": false,
   "block": 22,
   "row": 11224
  },
  {
   "path": "src/test/java/picard/vcf/SplitVcfsTest.java",
   "sha256": "24a91da29ae530775f3adca36a541e68565734ce0b1e8ae2528a1eed060cd161",
   "language": "Java",
   "lines": 60,
   "truncated": false,
   "block": 22,
   "row": 10685
  },
  {
   "path": "src/test/java/picard/vcf/UpdateVcfSequenceDictionaryTest.java",
   "sha256": "86a758dbc120bab1a757372b305ff7fe09b4aa82f3d970cd06ad6f7befc298b2",
   "language": "Java",
   "lines": 164,
   "truncated": false,
   "block": 22,
   "row": 11419
  },
  {
   "path": "src/test/java/picard/vcf/VariantContextComparatorTest.java",
   "sha256": "fed0cb2208719f7fb42a9bace1dec2285b18f52ff0e33b76be49c6153c0fa48a",
   "language": "Java",
   "lines": 107,
   "truncated": false,
   "block": 22,
   "row": 11169
  },
  {
   "path": "src/test/java/picard/vcf/VcfFormatConverterTest.java",
   "sha256": "8a7a4e567ddc80e430cc083bbbbba3a96c1d3d99d83be74c3552331465f2b849",
   "language": "Java",
   "lines": 127,
   "truncated": false,
   "block": 22,
   "row": 11088
  },
  {
   "path": "src/test/java/picard/vcf/VcfTestUtils.java",
   "sha256": "c6159d41096841e513939af5fe3c653d350b0bf4b972deede93be5e4d8c3b08c",
   "language": "Java",
   "lines": 179,
   "truncated": false,
   "block": 22,
   "row": 11499
  },
  {
   "path": "src/test/java/picard/vcf/VcfToIntervalListTest.java",
   "sha256": "28f9c84f339a839370d4d8ac03c696fb4a17c865dacde8eb6a6fd95b4c58c732",
   "language": "Java",
   "lines": 75,
   "truncated": false,
   "block": 22,
   "row": 10760
  },
  {
   "path": "src/test/java/picard/vcf/filter/TestFilterVcf.java",
   "sha256": "bbae28621226dacf3afa9ae98fbba0b0a13ecd5230750b19155eb5cf9db0a472",
   "language": "Java",
   "lines": 284,
   "truncated": false,
   "block": 22,
   "row": 11650
  },
  {
   "path": "src/test/java/picard/vcf/processor/AccumulatorExecutorTest.java",
   "sha256": "02fef7fb35e5bfd65d76ef01d6aca12ad7c728ba0386fb7b5f2ada938b1bdfd1",
   "language": "Java",
   "lines": 86,
   "truncated": false,
   "block": 22,
   "row": 10957
  },
  {
   "path": "src/test/java/picard/vcf/processor/ByWholeContigTest.java",
   "sha256": "1d33db7fa0601e279e3085e05285e86e8396654072aa401a3a10b20368373349",
   "language": "Java",
   "lines": 46,
   "truncated": false,
   "block": 22,
   "row": 10507
  },
  {
   "path": "src/test/java/picard/vcf/processor/ThreadsafeTest.java",
   "sha256": "ec0ec67511d086109f2e4000d7fc9101b8f30983329159b41ea82c63e1e31afd",
   "language": "Java",
   "lines": 96,
   "truncated": false,
   "block": 22,
   "row": 11057
  },
  {
   "path": "src/test/java/picard/vcf/processor/VcfFileSegmentGeneratorTest.java",
   "sha256": "e10f39e3618eccfee25f5310dc7f57276bf943dc4c9cc7ce437092727f94f3b2",
   "language": "Java",
   "lines": 55,
   "truncated": false,
   "block": 22,
   "row": 10704
  },
  {
   "path": "src/test/java/picard/vcf/processor/VcfPathSegmentGeneratorTest.java",
   "sha256": "299a98cfe5c8469960c693a261ac2de2e593037064797f173fcdf48332804e2a",
   "language": "Java",
   "lines": 50,
   "truncated": false,
   "block": 22,
   "row": 10677
  },
  {
   "path": "src/test/java/picard/vcf/processor/WidthLimitingDecoratorTest.java",
   "sha256": "3a8de1a86f8b5e0e88fea67ee995c138e240785bf70227188876c0f19e5a0376",
   "language": "Java",
   "lines": 122,
   "truncated": false,
   "block": 22,
   "row": 11063
  },
  {
   "path": "src/test/resources/failing.R",
   "sha256": "5ca9111b2064c4461858aaf469cb276886e1ee5aa8d4bdab72f618ef36f2b94e",
   "language": "R",
   "lines": 1,
   "truncated": false,
   "block": 23,
   "row": 15416
  },
  {
   "path": "src/test/resources/passing.R",
   "sha256": "756ffe4415499092b4c30fbbe8ef0b326a5db6b011a6dd23b6e29361c26d496c",
   "language": "R",
   "lines": 1,
   "truncated": false,
   "block": 23,
   "row": 15417
  },
  {
   "path": "testdata/picard/sam/FilterSamReads/filterOddStarts.js",
   "sha256": "6ef099cd758bcc185196c9e5e6cf6d47357e8c94658da6ef5deeec412a058c31",
   "language": "JavaScript",
   "lines": 2,
   "truncated": false,
   "block": 22,
   "row": 11964
  },
  {
   "path": "testdata/picard/sam/FilterSamReads/filterReadsWithout5primeSoftClip.js",
   "sha256": "92a76511ec7d9bf93beacc583c602b797be5795266509fc8a9379deeae729da5",
   "language": "JavaScript",
   "lines": 10,
   "truncated": false,
   "block": 22,
   "row": 11981
  }
 ]
}