{
 "format": "oscr-script-manifest/1",
 "repository": "figshare:28401326",
 "url": "https://doi.org/10.6084/m9.figshare.28401326",
 "host": "figshare.com",
 "commit": "",
 "license": "MIT",
 "license_confirmed_by": "license file LICENSE",
 "redistribution": "yes",
 "files": [
  {
   "path": "LICENSE",
   "sha256": "55fb2dbe54e5e5224337e2b58c396ba57d199fe3599503e6560322f6e28c86ee",
   "language": "License",
   "lines": 12,
   "truncated": false,
   "block": 17,
   "row": 7932
  },
  {
   "path": "README.md",
   "sha256": "4d4fa5f4e4219fa59a70e270862d963766bf9590cbb0f28b23460e1690e3be54",
   "language": "Text",
   "lines": 104,
   "truncated": false,
   "block": 18,
   "row": 10910
  },
  {
   "path": "src/MannWhitneyU.py",
   "sha256": "20bbf701c41c6e0480233596445109c1604040edf7f922eb07a52e6866f34dcf",
   "language": "Python",
   "lines": 134,
   "truncated": false,
   "block": 17,
   "row": 28798
  },
  {
   "path": "src/PairwiseTest.py",
   "sha256": "02f76dd85350f65c433c5417a68a8c5a92c5624563246bba83bf3cdce5e2356f",
   "language": "Python",
   "lines": 137,
   "truncated": false,
   "block": 17,
   "row": 28217
  },
  {
   "path": "src/compute_protein_activity.R",
   "sha256": "cd3245ec172420fd66eaf0e239e669032e78f067c1cd8a430b4a61e3c523d107",
   "language": "R",
   "lines": 147,
   "truncated": false,
   "block": 18,
   "row": 7169
  },
  {
   "path": "src/evaluate_activity.R",
   "sha256": "c6ebbc984c3aa867dfb43e2f70bf0ead452e745fcc1d7c26b619f0814f11a22b",
   "language": "R",
   "lines": 546,
   "truncated": false,
   "block": 18,
   "row": 8250
  },
  {
   "path": "src/gsea_on_matrix.R",
   "sha256": "0b42be0262fee2e741ac8b3949453342d189ec2232a308b95aedfc6132d831cb",
   "language": "R",
   "lines": 140,
   "truncated": false,
   "block": 18,
   "row": 7121
  },
  {
   "path": "src/process_inputs.py",
   "sha256": "53c7e176c6b6bee3e94a7580e92d862302944e8164878e0052d962d15a24d611",
   "language": "Python",
   "lines": 74,
   "truncated": false,
   "block": 17,
   "row": 23295
  },
  {
   "path": "src/util.py",
   "sha256": "1ec68cc6fbe55f49fb158898413de565d9be4046de9f357e83434bc191a4be07",
   "language": "Python",
   "lines": 145,
   "truncated": false,
   "block": 17,
   "row": 27892
  },
  {
   "path": "src/vipersp/scripts/adjust_genexpr_sf_activity.py",
   "sha256": "42d23d266e041ed049c8bcac776a909c7695616fb69ff41f1ef91ef540326231",
   "language": "Python",
   "lines": 81,
   "truncated": false,
   "block": 17,
   "row": 24065
  },
  {
   "path": "src/vipersp/setup.py",
   "sha256": "456284738814cc7fc03291b7b13180424fad70f9d454279700ff8abbb0ae0dba",
   "language": "Python",
   "lines": 10,
   "truncated": false,
   "block": 17,
   "row": 17640
  },
  {
   "path": "src/vipersp/vipersp/model.py",
   "sha256": "0e0831df11961b034f4afb6583104202bda0818ba032642b611b75e374b8238a",
   "language": "Python",
   "lines": 73,
   "truncated": false,
   "block": 17,
   "row": 23668
  },
  {
   "path": "workflows/02-preprocess_data/scripts/preprocess_stringdb.py",
   "sha256": "8a4698bcc1532ea3ca3b561c692883642ef91569f4ced68d537f114543934ebf",
   "language": "Python",
   "lines": 95,
   "truncated": false,
   "block": 17,
   "row": 23846
  },
  {
   "path": "workflows/03-new_empirical_network/scripts/figures_cancer_splicing_program.R",
   "sha256": "bea0cbe3f6f630fdc24a2c6bcf67ffdd7ff9a8346695e367eb052c1c9f2e208c",
   "language": "R",
   "lines": 667,
   "truncated": false,
   "block": 18,
   "row": 8392
  },
  {
   "path": "workflows/03-new_empirical_network/scripts/figures_carcinogenesis.R",
   "sha256": "4c95a67605a6ea5e952f6b8d9aadb0b869937bd49c331b113dc2d47242bd0215",
   "language": "R",
   "lines": 494,
   "truncated": false,
   "block": 18,
   "row": 8275
  },
  {
   "path": "workflows/03-new_empirical_network/scripts/figures_empirical_psi_networks.R",
   "sha256": "99538722520fb437cc30e7ded5349aa30aa814b81090f94baf1b0c0f4d116c02",
   "language": "R",
   "lines": 296,
   "truncated": false,
   "block": 18,
   "row": 7962
  },
  {
   "path": "workflows/04-sf_programs_in_differentiation/scripts/figures_CardosoMoreira2020.R",
   "sha256": "bc05dda9ac91ebd5e97ed23a3f93168f2bdb150c5fcd8dcb0adce05c70c1035d",
   "language": "R",
   "lines": 392,
   "truncated": false,
   "block": 18,
   "row": 8183
  },
  {
   "path": "workflows/05-activity_estimation_w_genexpr/scripts/figures_activity_modeling.R",
   "sha256": "62c621a4135a3c39b4afa2df82f3750b4e7688c575c9a3a09043de1a34959d25",
   "language": "R",
   "lines": 177,
   "truncated": false,
   "block": 18,
   "row": 7481
  },
  {
   "path": "workflows/05-activity_estimation_w_genexpr/scripts/figures_eval_carcinogenesis.R",
   "sha256": "cdf9a336f62f932963e9f26b94c4c79734da34b09741353934331b40127a3ad8",
   "language": "R",
   "lines": 326,
   "truncated": false,
   "block": 18,
   "row": 8110
  },
  {
   "path": "workflows/05-activity_estimation_w_genexpr/scripts/figures_genexpr_networks.R",
   "sha256": "1631d1bdf0d69051a3bc22c472dd12beb39fd1c9dfbf41ad0046a69eced63d71",
   "language": "R",
   "lines": 219,
   "truncated": false,
   "block": 18,
   "row": 7659
  },
  {
   "path": "workflows/05-activity_estimation_w_genexpr/scripts/figures_network_evaluation.R",
   "sha256": "c3e6edb4c73e93dda930d19df75b8bb70d30320c67d0b28b4b9530abfe79a917",
   "language": "R",
   "lines": 264,
   "truncated": false,
   "block": 18,
   "row": 7840
  },
  {
   "path": "workflows/06-carcinogenic_switch_regulation/scripts/figures_gsea_carcinogenesis.R",
   "sha256": "9ef6fd1a9b911c5e6068d7116a151887dc829d830068365a05723336ee26c749",
   "language": "R",
   "lines": 1242,
   "truncated": false,
   "block": 18,
   "row": 8499
  },
  {
   "path": "workflows/06-carcinogenic_switch_regulation/scripts/figures_upstream_regulators.R",
   "sha256": "857e4750553709807861adb0bc94c3bf39dab0055d345c8c4c48a1065a91b54f",
   "language": "R",
   "lines": 902,
   "truncated": false,
   "block": 18,
   "row": 8460
  },
  {
   "path": "workflows/06-carcinogenic_switch_regulation/scripts/ppi_path_lengths.py",
   "sha256": "5c6642be8eaad350825f62fc29cab24e1b348f9818d07b674f6a8ed0afb9f603",
   "language": "Python",
   "lines": 124,
   "truncated": false,
   "block": 17,
   "row": 25378
  }
 ]
}