baseline_v1/REQUIREMENTS_TRACEABILITY.md

Requirement traceability

Requested component	Location	Delivered status
Title, abstract, central contribution	Opening; section 1	Complete text
Mathematical state space and dynamics	Section 3	Defined; physical calibration absent
Theorems A-F and proofs	Sections 4-6, 8-13, 16, 18	Restricted proofs; conditional universality
Compression and seed information	Sections 4-5, 21-22	Bounds and accounting conventions
Morphogenetic proofreading and thresholds	Sections 8-13	Restricted models; no physical universal threshold
New theoretical contribution	Sections 11-12	Reliability-access window and redundancy-access reversal
Genome IR and compiler	Sections 7, 14; src/genome.py	Executable restricted subset; molecular lowering open
Physical finite-alphabet architecture	Sections 6, 16-17	Conditional model and proposed mapping
Multimaterial transduction	Sections 16-17	Qualified process ladder; no new chemistry
Parallel growth bounds	Section 18	Restricted proof and resource bounds
Transport, heat, strain, numerical estimates	Sections 19-20	Calculations with stated assumed parameters
Material logistics and internal access	Sections 11-12, 15, 19	Theory and coarse transport model
Topology/occlusion scheduling	Section 15; src/theory.py	Fixed-path DAG lemma/checker; not integrated into lattice locks
Multiscale precision	Section 21	Geometric fraction calculation and limits
Leverage, autonomy, capacity	Sections 21-22	Defined, with anti-hidden-complexity accounting
Simulation components and ablations	Sections 23-24; src/, results/	Executed, including failures
Experimental roadmap and minimal experiment	Sections 25-26	Proposed design; no sequence set or wet-lab validation
Functional benchmark levels 0-7	Section 26	Prospective criteria; no claim of physical completion
Failure modes and falsification	Section 27	Claim-specific support/failure/alternative tests
Maintenance and biological relation	Section 28	Conditions and explicit limitations
100 nm to 1 cm scaling	Sections 19, 29	Order-of-magnitude assumptions; no manufacturing forecast
1, 3, 5, 10, 20-year programme	Section 30	Conditional milestones
Open problems and adversarial audit	Sections 31-32	Ranked barriers and retained counterevidence
Required final assessment	Final assessment	Subjective maturity estimates clearly identified

A standalone research package means that text, code, configuration, and recorded results are included. It does not mean that the scientific objective of arbitrary universal fabrication has been solved.