matter-embryogenesis / baseline_v1 /src /functionality.py
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"""A passive scalar-resistor benchmark, not an electronic-device simulator."""
import numpy as np
from scipy.sparse import coo_matrix
from scipy.sparse.linalg import spsolve
def conductance(material):
sig=np.full(material.shape,1e-8)
sig[material==0]=1e-7; sig[material==1]=1e-4; sig[material==2]=1.
fixed=np.zeros(material.shape,bool); fixed[0]=True; fixed[-1]=True
volt=np.zeros(material.shape); volt[0]=1.
ids=np.full(material.shape,-1,int); ids[~fixed]=np.arange((~fixed).sum())
n=int((~fixed).sum()); rows=[]; cols=[]; data=[]; rhs=np.zeros(n)
diag=np.zeros(n)
for ax in range(material.ndim):
a=[slice(None)]*material.ndim; b=a.copy(); a[ax]=slice(None,-1); b[ax]=slice(1,None)
a,b=tuple(a),tuple(b)
g=2*sig[a]*sig[b]/(sig[a]+sig[b]); ia,ib=ids[a],ids[b]
for i,j,vj in [(ia,ib,volt[b]),(ib,ia,volt[a])]:
inside=i>=0
np.add.at(diag,i[inside],g[inside])
ff=inside&(j<0); np.add.at(rhs,i[ff],(g*vj)[ff])
both=inside&(j>=0)
rows.extend(i[both]);cols.extend(j[both]);data.extend(-g[both])
rows.extend(range(n));cols.extend(range(n));data.extend(diag)
A=coo_matrix((data,(rows,cols)),shape=(n,n)).tocsr()
volt[~fixed]=spsolve(A,rhs)
g0=2*sig[0]*sig[1]/(sig[0]+sig[1])
return float(np.sum(g0*(1-volt[1])))