Datasets:
Formats:
json
Languages:
English
Size:
1K - 10K
Tags:
matter-embryogenesis
developmental-fabrication
nanotechnology
self-assembly
materials-science
passive-networks
| from pathlib import Path | |
| import json | |
| import numpy as np | |
| import matplotlib | |
| matplotlib.use('Agg') | |
| import matplotlib.pyplot as plt | |
| from gauge_contracts import uniform_reserve_yield | |
| ROOT=Path(__file__).resolve().parents[1] | |
| DATA=ROOT/'results/gauge';FIG=ROOT/'figures' | |
| plt.rcParams.update({'font.size':9,'axes.spines.top':False, | |
| 'axes.spines.right':False,'savefig.dpi':200}) | |
| phase=json.loads((DATA/'phase.json').read_text()) | |
| palette=['#17647f','#3c8d99','#768c45','#b07e3c','#9c4f6e'] | |
| fig,ax=plt.subplots(1,2,figsize=(10,3.65),layout='constrained') | |
| for color,N in zip(palette,[4,16,64,256,1024]): | |
| cs=np.linspace(.4,.65,301) | |
| probability=[uniform_reserve_yield(N,.65,1.35,c,.04) for c in cs] | |
| ax[0].plot(cs,probability,color=color,label=f'{N} modules') | |
| rows=[r for r in phase['rows'] if r['modules']==N and r['capacity']<=.65] | |
| ax[0].scatter([r['capacity'] for r in rows], | |
| [r['passes']/r['trials'] for r in rows],s=10,color=color) | |
| ax[0].axvline(phase['critical_capacity'],color='#263542',ls='--',lw=1) | |
| ax[0].set(xlabel='Reachable additive reserve per module', | |
| ylabel='Probability of G2 feasibility',ylim=(-.025,1.04), | |
| title='Exact finite-size reserve transition') | |
| ax[0].legend(frameon=False,fontsize=7,loc='upper left') | |
| for color,c in zip(palette,[.55,.58,.59,.60]): | |
| Ns=np.arange(2,1025,2) | |
| ys=np.maximum([uniform_reserve_yield(int(N),.65,1.35,c,.04) for N in Ns],1e-40) | |
| ax[1].semilogy(Ns,ys,color=color,label=f'Reserve = {c:.2f}') | |
| ax[1].set(xlabel='Number of modules',ylabel='Exact feasibility probability', | |
| ylim=(1e-32,1.5),title='Subcritical yield vanishes exponentially') | |
| ax[1].legend(frameon=False,fontsize=8) | |
| fig.savefig(FIG/'gauge_reserve_phase.png');plt.close(fig) | |
| cal=json.loads((DATA/'calibration.json').read_text()) | |
| fig,ax=plt.subplots(1,2,figsize=(10,3.4),layout='constrained') | |
| for dim,color in zip([1,2,3],palette): | |
| rows=[r for r in cal['scaling'] if r['dimension']==dim] | |
| ax[0].loglog([r['nodes'] for r in rows],[r['rho_max'] for r in rows], | |
| 'o-',color=color,label=f'{dim}D') | |
| ax[1].loglog([r['nodes'] for r in rows], | |
| [r['samples_for_radius_006'] for r in rows], | |
| 'o-',color=color,label=f'{dim}D') | |
| ax[0].set(xlabel='Comparison nodes',ylabel='Maximum effective resistance', | |
| title='Comparison topology controls noise amplification') | |
| ax[1].set(xlabel='Comparison nodes',ylabel='Samples per edge', | |
| title='Radius 0.006; 128 inspections; failure budget 0.005') | |
| for a in ax:a.legend(frameon=False);a.grid(alpha=.18) | |
| fig.savefig(FIG/'gauge_calibration.png');plt.close(fig) | |
| summary=json.loads((DATA/'summary.json').read_text()) | |
| methods=['projective','common_detector_gain','common_material_scale', | |
| 'conventional_joint','fixed_representative','insufficient_reserve', | |
| 'differential_bias','early_reference_release'] | |
| labels=['Projective repair','Shared detector gain','Common material scale', | |
| 'Matched conventional','Fixed representative','Insufficient reserve', | |
| 'Differential bias','Early reference release'] | |
| fig,ax=plt.subplots(1,2,figsize=(10,4.4),layout='constrained',sharey=True) | |
| y=np.arange(len(methods)) | |
| for d,shift,color in [(2,-.18,'#17647f'),(3,.18,'#b07e3c')]: | |
| rows={r['method']:r for r in summary if r['dimension']==d} | |
| ax[0].barh(y+shift,[rows[m]['functional']/32 for m in methods], | |
| height=.32,color=color,label=f'{d}D') | |
| ax[1].barh(y+shift,[rows[m]['false_certificates']/32 for m in methods], | |
| height=.32,color=color) | |
| ax[0].set(yticks=y,yticklabels=labels,xlim=(0,1.03), | |
| xlabel='Completed functional objects / 32', | |
| title='Model results with explicit negative controls') | |
| ax[0].invert_yaxis() | |
| ax[1].set(xlim=(0,1.03),xlabel='False local certificates / 32', | |
| title='Differential bias remains a hard failure') | |
| ax[0].legend(frameon=False,loc='lower right') | |
| fig.savefig(FIG/'gauge_results.png');plt.close(fig) | |
| print('Created three v3 scientific figures.') | |