diff --git "a/baseline_v1/results/growth_runs.json" "b/baseline_v1/results/growth_runs.json" new file mode 100644--- /dev/null +++ "b/baseline_v1/results/growth_runs.json" @@ -0,0 +1,15351 @@ +[ + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262919 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.95703125, + "solid_material_fidelity": 0.9585439838220424, + "structural_iou": 0.9778225806451613, + "defect_density": 0.04296875, + "growth_time": 16.900000000000002, + "repair_attempts": 166, + "successful_repairs": 162, + "repair_overhead": 0.162109375, + "attachment_events": 1024, + "transduction_defects": 20, + "feed_consumed": 470.70000000000095, + "feed_supplied": 234.15684882859472, + "waste_proxy": 9.960000000000004, + "fuel_turnover_kBT_proxy": 22130.0, + "min_concentration": 0.41222300003655954, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9219481396555063, + 0 + ], + [ + 2.0, + 43, + 0, + 0.8568571382228162, + 3 + ], + [ + 3.0, + 95, + 0, + 0.7555463732298984, + 7 + ], + [ + 4.0, + 161, + 1, + 0.7132705502076397, + 15 + ], + [ + 5.0, + 266, + 13, + 0.6511382665382512, + 26 + ], + [ + 6.0, + 390, + 43, + 0.5695993155994818, + 42 + ], + [ + 7.0, + 513, + 98, + 0.5656576656253922, + 57 + ], + [ + 8.0, + 660, + 169, + 0.5621595853224801, + 76 + ], + [ + 9.0, + 788, + 275, + 0.5013970189547435, + 102 + ], + [ + 10.0, + 910, + 399, + 0.5045484652055034, + 115 + ], + [ + 11.0, + 981, + 530, + 0.49491231572389754, + 136 + ], + [ + 12.0, + 1014, + 672, + 0.4986001157596643, + 147 + ], + [ + 13.0, + 1024, + 800, + 0.5021960430711021, + 157 + ], + [ + 14.0, + 1024, + 916, + 0.5057035215768007, + 159 + ], + [ + 15.0, + 1024, + 984, + 0.48522311208078023, + 160 + ], + [ + 16.0, + 1024, + 1015, + 0.40813749158463575, + 162 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 0, + "conductance": 0.17506515863142563, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.12133491810912567, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262920 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9580078125, + "solid_material_fidelity": 0.9575328614762386, + "structural_iou": 0.9787878787878788, + "defect_density": 0.0419921875, + "growth_time": 17.400000000000002, + "repair_attempts": 137, + "successful_repairs": 132, + "repair_overhead": 0.1337890625, + "attachment_events": 1024, + "transduction_defects": 17, + "feed_consumed": 468.96000000000066, + "feed_supplied": 234.61759060962015, + "waste_proxy": 8.22, + "fuel_turnover_kBT_proxy": 21840.0, + "min_concentration": 0.4820459458269395, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.9084660149687533, + 0 + ], + [ + 2.0, + 38, + 0, + 0.8454261397387672, + 2 + ], + [ + 3.0, + 77, + 0, + 0.7806564867416621, + 4 + ], + [ + 4.0, + 120, + 1, + 0.7208464668197607, + 9 + ], + [ + 5.0, + 197, + 15, + 0.6575891503971497, + 16 + ], + [ + 6.0, + 303, + 41, + 0.6016289844617987, + 22 + ], + [ + 7.0, + 430, + 84, + 0.587720348685046, + 27 + ], + [ + 8.0, + 590, + 125, + 0.5459443802696704, + 41 + ], + [ + 9.0, + 758, + 205, + 0.46766863248532586, + 61 + ], + [ + 10.0, + 899, + 312, + 0.47406319415002535, + 80 + ], + [ + 11.0, + 980, + 445, + 0.47825214949355266, + 105 + ], + [ + 12.0, + 1014, + 605, + 0.48230959182615274, + 123 + ], + [ + 13.0, + 1023, + 775, + 0.4845889508583998, + 129 + ], + [ + 14.0, + 1024, + 910, + 0.4868623347553908, + 131 + ], + [ + 15.0, + 1024, + 983, + 0.47349189575059014, + 132 + ], + [ + 16.0, + 1024, + 1014, + 0.4774628568945265, + 132 + ], + [ + 17.0, + 1024, + 1023, + 0.48100006754582775, + 132 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 1, + "conductance": 0.15777361131347623, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.2081224831444598, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262921 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9580078125, + "solid_material_fidelity": 0.9585439838220424, + "structural_iou": 0.9767911200807265, + "defect_density": 0.0419921875, + "growth_time": 21.6, + "repair_attempts": 181, + "successful_repairs": 179, + "repair_overhead": 0.1767578125, + "attachment_events": 1024, + "transduction_defects": 15, + "feed_consumed": 471.60000000000065, + "feed_supplied": 243.30896828506144, + "waste_proxy": 10.860000000000001, + "fuel_turnover_kBT_proxy": 22280.0, + "min_concentration": 0.4847038003330645, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 12, + 0, + 0.8980837804182138, + 1 + ], + [ + 2.0, + 31, + 0, + 0.8383439750887116, + 3 + ], + [ + 3.0, + 84, + 0, + 0.7744137909181611, + 7 + ], + [ + 4.0, + 156, + 3, + 0.715218081032255, + 10 + ], + [ + 5.0, + 239, + 13, + 0.6551437759376847, + 19 + ], + [ + 6.0, + 337, + 36, + 0.5867202241725682, + 25 + ], + [ + 7.0, + 480, + 88, + 0.5412672880225545, + 38 + ], + [ + 8.0, + 645, + 165, + 0.5431361601484751, + 73 + ], + [ + 9.0, + 806, + 248, + 0.542831822305095, + 104 + ], + [ + 10.0, + 926, + 347, + 0.5341153667356927, + 126 + ], + [ + 11.0, + 979, + 500, + 0.4534843759966536, + 146 + ], + [ + 12.0, + 995, + 661, + 0.4592575268090502, + 159 + ], + [ + 13.0, + 1000, + 819, + 0.4648534556095038, + 171 + ], + [ + 14.0, + 1005, + 937, + 0.47027914690812356, + 174 + ], + [ + 15.0, + 1014, + 980, + 0.46068022415013277, + 175 + ], + [ + 16.0, + 1021, + 995, + 0.4646135677444898, + 177 + ], + [ + 17.0, + 1022, + 1000, + 0.4684558138805165, + 179 + ], + [ + 18.0, + 1024, + 1006, + 0.472210255365194, + 179 + ], + [ + 19.0, + 1024, + 1016, + 0.4758800509421679, + 179 + ], + [ + 20.0, + 1024, + 1021, + 0.479468231045763, + 179 + ], + [ + 21.0, + 1024, + 1022, + 0.48297770329990164, + 179 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 2, + "conductance": 0.1624843459955307, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.18447895460039376, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262922 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.970703125, + "solid_material_fidelity": 0.9716885743174924, + "structural_iou": 0.9868819374369324, + "defect_density": 0.029296875, + "growth_time": 19.700000000000003, + "repair_attempts": 158, + "successful_repairs": 156, + "repair_overhead": 0.154296875, + "attachment_events": 1024, + "transduction_defects": 8, + "feed_consumed": 470.2200000000006, + "feed_supplied": 240.89117664148844, + "waste_proxy": 9.48, + "fuel_turnover_kBT_proxy": 22050.0, + "min_concentration": 0.5152165775500415, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9111838816582501, + 0 + ], + [ + 2.0, + 40, + 0, + 0.8402980220026627, + 0 + ], + [ + 3.0, + 98, + 0, + 0.7185294303853, + 6 + ], + [ + 4.0, + 181, + 1, + 0.6907507428679676, + 13 + ], + [ + 5.0, + 275, + 13, + 0.6305335172667359, + 24 + ], + [ + 6.0, + 399, + 42, + 0.5666187301170852, + 41 + ], + [ + 7.0, + 558, + 108, + 0.5254727867893144, + 52 + ], + [ + 8.0, + 713, + 191, + 0.52897107648311, + 75 + ], + [ + 9.0, + 855, + 286, + 0.4939813868379037, + 107 + ], + [ + 10.0, + 948, + 419, + 0.4986600269324294, + 129 + ], + [ + 11.0, + 1002, + 577, + 0.4955992035310406, + 142 + ], + [ + 12.0, + 1015, + 729, + 0.4991768834993459, + 147 + ], + [ + 13.0, + 1019, + 866, + 0.5026648440837753, + 152 + ], + [ + 14.0, + 1020, + 955, + 0.5060665205076265, + 154 + ], + [ + 15.0, + 1021, + 1005, + 0.5002608916621583, + 155 + ], + [ + 16.0, + 1024, + 1016, + 0.5036645842416655, + 155 + ], + [ + 17.0, + 1024, + 1019, + 0.5069805027081083, + 156 + ], + [ + 18.0, + 1024, + 1020, + 0.510212267481122, + 156 + ], + [ + 19.0, + 1024, + 1021, + 0.5133633178118278, + 156 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 3, + "conductance": 0.18026171353659304, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.0952530216484343, + "functional_pass": true + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262923 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9599609375, + "solid_material_fidelity": 0.961577350859454, + "structural_iou": 0.9828629032258065, + "defect_density": 0.0400390625, + "growth_time": 18.1, + "repair_attempts": 150, + "successful_repairs": 148, + "repair_overhead": 0.146484375, + "attachment_events": 1024, + "transduction_defects": 16, + "feed_consumed": 469.74000000000046, + "feed_supplied": 237.5195730239961, + "waste_proxy": 9.0, + "fuel_turnover_kBT_proxy": 21970.0, + "min_concentration": 0.4176777565273367, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 16, + 0, + 0.9026088202399114, + 1 + ], + [ + 2.0, + 36, + 0, + 0.8314062062031993, + 3 + ], + [ + 3.0, + 84, + 0, + 0.747035126631004, + 9 + ], + [ + 4.0, + 155, + 2, + 0.693938495062769, + 12 + ], + [ + 5.0, + 242, + 18, + 0.6330300295939078, + 22 + ], + [ + 6.0, + 347, + 41, + 0.5822500357881563, + 35 + ], + [ + 7.0, + 482, + 89, + 0.5721215268770732, + 47 + ], + [ + 8.0, + 656, + 161, + 0.5487944840060314, + 65 + ], + [ + 9.0, + 802, + 249, + 0.5524775850520662, + 83 + ], + [ + 10.0, + 916, + 362, + 0.5299109098637947, + 105 + ], + [ + 11.0, + 987, + 495, + 0.5087692618335217, + 121 + ], + [ + 12.0, + 1012, + 679, + 0.4774559231542307, + 133 + ], + [ + 13.0, + 1018, + 814, + 0.4821050374424181, + 140 + ], + [ + 14.0, + 1023, + 929, + 0.4556473020381177, + 144 + ], + [ + 15.0, + 1024, + 992, + 0.3987128874089037, + 148 + ], + [ + 16.0, + 1024, + 1013, + 0.40521458481105616, + 148 + ], + [ + 17.0, + 1024, + 1018, + 0.41153403347207257, + 148 + ], + [ + 18.0, + 1024, + 1024, + 0.4176777565273367, + 148 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 4, + "conductance": 0.15685993512968283, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.21270829202345432, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262924 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9599609375, + "solid_material_fidelity": 0.9585439838220424, + "structural_iou": 0.9838220424671386, + "defect_density": 0.0400390625, + "growth_time": 17.0, + "repair_attempts": 159, + "successful_repairs": 157, + "repair_overhead": 0.1552734375, + "attachment_events": 1024, + "transduction_defects": 15, + "feed_consumed": 470.2800000000008, + "feed_supplied": 238.09989011872244, + "waste_proxy": 9.540000000000004, + "fuel_turnover_kBT_proxy": 22060.0, + "min_concentration": 0.5039012529208233, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -5.684341886080801e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.902350572656609, + 0 + ], + [ + 2.0, + 46, + 0, + 0.8189841423833075, + 2 + ], + [ + 3.0, + 100, + 0, + 0.735525421330354, + 10 + ], + [ + 4.0, + 168, + 2, + 0.6774555102241416, + 15 + ], + [ + 5.0, + 255, + 17, + 0.621273192050091, + 23 + ], + [ + 6.0, + 355, + 48, + 0.5510402767101223, + 36 + ], + [ + 7.0, + 503, + 106, + 0.5555690566834364, + 49 + ], + [ + 8.0, + 647, + 177, + 0.556087701221661, + 67 + ], + [ + 9.0, + 796, + 266, + 0.5241993293126169, + 92 + ], + [ + 10.0, + 913, + 366, + 0.5312304881506328, + 108 + ], + [ + 11.0, + 991, + 511, + 0.5380639640482094, + 129 + ], + [ + 12.0, + 1015, + 660, + 0.5267320740453165, + 142 + ], + [ + 13.0, + 1024, + 811, + 0.4977805358025672, + 152 + ], + [ + 14.0, + 1024, + 922, + 0.4926290698665196, + 155 + ], + [ + 15.0, + 1024, + 996, + 0.49661672187719835, + 157 + ], + [ + 16.0, + 1024, + 1016, + 0.500497161187092, + 157 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 5, + "conductance": 0.1891067473248187, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.05085913768765549, + "functional_pass": true + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262925 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9482421875, + "solid_material_fidelity": 0.9494438827098078, + "structural_iou": 0.967741935483871, + "defect_density": 0.0517578125, + "growth_time": 16.3, + "repair_attempts": 138, + "successful_repairs": 135, + "repair_overhead": 0.134765625, + "attachment_events": 1024, + "transduction_defects": 19, + "feed_consumed": 469.0200000000009, + "feed_supplied": 234.78091264745765, + "waste_proxy": 8.279999999999996, + "fuel_turnover_kBT_proxy": 21850.0, + "min_concentration": 0.48829572049854797, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 15, + 0, + 0.9029218580204309, + 0 + ], + [ + 2.0, + 48, + 0, + 0.8317789794367744, + 1 + ], + [ + 3.0, + 105, + 0, + 0.7626590578034423, + 5 + ], + [ + 4.0, + 159, + 1, + 0.6956534854319647, + 8 + ], + [ + 5.0, + 250, + 18, + 0.6251719855108648, + 18 + ], + [ + 6.0, + 365, + 55, + 0.5920635096565559, + 23 + ], + [ + 7.0, + 515, + 110, + 0.5764674204455018, + 40 + ], + [ + 8.0, + 675, + 166, + 0.5365835257264456, + 56 + ], + [ + 9.0, + 836, + 262, + 0.5184401525303006, + 74 + ], + [ + 10.0, + 931, + 378, + 0.5219473851926152, + 93 + ], + [ + 11.0, + 999, + 531, + 0.49733803168173757, + 109 + ], + [ + 12.0, + 1023, + 691, + 0.5000189655616167, + 122 + ], + [ + 13.0, + 1024, + 844, + 0.486925063699143, + 131 + ], + [ + 14.0, + 1024, + 938, + 0.48098975767143315, + 134 + ], + [ + 15.0, + 1024, + 1002, + 0.4843560117472282, + 135 + ], + [ + 16.0, + 1024, + 1023, + 0.48764647873692146, + 135 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 6, + "conductance": 0.16907987722835432, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.15137549166060982, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262926 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.95703125, + "solid_material_fidelity": 0.9565217391304348, + "structural_iou": 0.9747474747474747, + "defect_density": 0.04296875, + "growth_time": 19.1, + "repair_attempts": 130, + "successful_repairs": 130, + "repair_overhead": 0.126953125, + "attachment_events": 1024, + "transduction_defects": 14, + "feed_consumed": 468.54000000000053, + "feed_supplied": 240.16786435698467, + "waste_proxy": 7.799999999999995, + "fuel_turnover_kBT_proxy": 21770.0, + "min_concentration": 0.5080786374127066, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 20, + 0, + 0.9069386937014303, + 1 + ], + [ + 2.0, + 61, + 0, + 0.8374310020233905, + 1 + ], + [ + 3.0, + 109, + 0, + 0.7575290986375508, + 7 + ], + [ + 4.0, + 163, + 3, + 0.6856265287357574, + 9 + ], + [ + 5.0, + 256, + 24, + 0.6245311495290476, + 16 + ], + [ + 6.0, + 373, + 64, + 0.6082251236730346, + 23 + ], + [ + 7.0, + 494, + 115, + 0.5704004243536251, + 40 + ], + [ + 8.0, + 658, + 169, + 0.5253919024685577, + 59 + ], + [ + 9.0, + 796, + 272, + 0.49324023138397904, + 72 + ], + [ + 10.0, + 903, + 386, + 0.4960739375123772, + 91 + ], + [ + 11.0, + 980, + 509, + 0.4993601800490715, + 106 + ], + [ + 12.0, + 1007, + 679, + 0.5025817566508298, + 117 + ], + [ + 13.0, + 1015, + 808, + 0.4861953356975127, + 125 + ], + [ + 14.0, + 1022, + 915, + 0.4900966539498561, + 129 + ], + [ + 15.0, + 1023, + 984, + 0.49389075326919735, + 129 + ], + [ + 16.0, + 1024, + 1008, + 0.4975819552579185, + 130 + ], + [ + 17.0, + 1024, + 1016, + 0.5011743944848095, + 130 + ], + [ + 18.0, + 1024, + 1022, + 0.5046720268236832, + 130 + ], + [ + 19.0, + 1024, + 1024, + 0.5080786374127066, + 130 + ] + ], + "case": "reference", + "dim": 2, + "replicate": 7, + "conductance": 0.1556928216822419, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.21856612142188225, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262919 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8154296875, + "solid_material_fidelity": 0.8129423660262892, + "structural_iou": 0.8972809667673716, + "defect_density": 0.1845703125, + "growth_time": 16.900000000000002, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 20, + "feed_consumed": 460.7400000000006, + "feed_supplied": 228.85286986858293, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.4457953987738807, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9219481396555063, + 0 + ], + [ + 2.0, + 43, + 0, + 0.8604766566666009, + 0 + ], + [ + 3.0, + 95, + 0, + 0.7848546179405268, + 0 + ], + [ + 4.0, + 161, + 1, + 0.7198412448865249, + 0 + ], + [ + 5.0, + 266, + 13, + 0.6539200371381629, + 0 + ], + [ + 6.0, + 390, + 43, + 0.6074745212022845, + 0 + ], + [ + 7.0, + 513, + 98, + 0.5846649610908522, + 0 + ], + [ + 8.0, + 660, + 169, + 0.5714066868119599, + 0 + ], + [ + 9.0, + 788, + 275, + 0.5159230850841023, + 0 + ], + [ + 10.0, + 910, + 399, + 0.5190165208055652, + 0 + ], + [ + 11.0, + 981, + 530, + 0.5031872525450994, + 0 + ], + [ + 12.0, + 1014, + 672, + 0.5068975589941027, + 0 + ], + [ + 13.0, + 1024, + 800, + 0.5105145167157065, + 0 + ], + [ + 14.0, + 1024, + 916, + 0.5140416375242903, + 0 + ], + [ + 15.0, + 1024, + 984, + 0.4947020516955528, + 0 + ], + [ + 16.0, + 1024, + 1015, + 0.4419261177045439, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 0, + "conductance": 0.059604426064014955, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.7008409422067893, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262920 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.849609375, + "solid_material_fidelity": 0.8503538928210314, + "structural_iou": 0.9226130653266331, + "defect_density": 0.150390625, + "growth_time": 17.400000000000002, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 17, + "feed_consumed": 460.7400000000004, + "feed_supplied": 230.57491248610336, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.4978183865549848, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.9084660149687533, + 0 + ], + [ + 2.0, + 38, + 0, + 0.8524713141694257, + 0 + ], + [ + 3.0, + 77, + 0, + 0.780969596688843, + 0 + ], + [ + 4.0, + 120, + 1, + 0.7211026070991379, + 0 + ], + [ + 5.0, + 197, + 15, + 0.6577670108587458, + 0 + ], + [ + 6.0, + 303, + 41, + 0.6020210882287231, + 0 + ], + [ + 7.0, + 430, + 84, + 0.5932687138536276, + 0 + ], + [ + 8.0, + 590, + 125, + 0.55945406051511, + 0 + ], + [ + 9.0, + 758, + 205, + 0.4820037681372934, + 0 + ], + [ + 10.0, + 899, + 312, + 0.4881249957987047, + 0 + ], + [ + 11.0, + 980, + 445, + 0.49206629568188687, + 0 + ], + [ + 12.0, + 1014, + 605, + 0.4948771389738173, + 0 + ], + [ + 13.0, + 1023, + 775, + 0.4970381996536774, + 0 + ], + [ + 14.0, + 1024, + 910, + 0.49919408051760933, + 0 + ], + [ + 15.0, + 1024, + 983, + 0.4919584280018081, + 0 + ], + [ + 16.0, + 1024, + 1014, + 0.49591967841480383, + 0 + ], + [ + 17.0, + 1024, + 1023, + 0.49674003921787907, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 1, + "conductance": 0.0003722031804235057, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.9981318844905319, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262921 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.7939453125, + "solid_material_fidelity": 0.7937310414560161, + "structural_iou": 0.8815261044176707, + "defect_density": 0.2060546875, + "growth_time": 21.6, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 15, + "feed_consumed": 460.74000000000035, + "feed_supplied": 237.24684867669896, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.4907015211745896, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 12, + 0, + 0.8980837804182138, + 0 + ], + [ + 2.0, + 31, + 0, + 0.8384350768706105, + 0 + ], + [ + 3.0, + 84, + 0, + 0.7746035495586603, + 0 + ], + [ + 4.0, + 156, + 3, + 0.7153046163732147, + 0 + ], + [ + 5.0, + 239, + 13, + 0.6552698254822338, + 0 + ], + [ + 6.0, + 337, + 36, + 0.5877094982111147, + 0 + ], + [ + 7.0, + 480, + 88, + 0.5422618513214917, + 0 + ], + [ + 8.0, + 645, + 165, + 0.5455617028803117, + 0 + ], + [ + 9.0, + 806, + 248, + 0.5483218279160283, + 0 + ], + [ + 10.0, + 926, + 347, + 0.5353890470665357, + 0 + ], + [ + 11.0, + 979, + 500, + 0.4547555297126556, + 0 + ], + [ + 12.0, + 995, + 661, + 0.46052745692817976, + 0 + ], + [ + 13.0, + 1000, + 819, + 0.46612219968047724, + 0 + ], + [ + 14.0, + 1005, + 937, + 0.4715467386645573, + 0 + ], + [ + 15.0, + 1014, + 980, + 0.46641463555917123, + 0 + ], + [ + 16.0, + 1021, + 995, + 0.47039266395042223, + 0 + ], + [ + 17.0, + 1022, + 1000, + 0.4742780154922288, + 0 + ], + [ + 18.0, + 1024, + 1006, + 0.4780740245457134, + 0 + ], + [ + 19.0, + 1024, + 1016, + 0.4817838903624685, + 0 + ], + [ + 20.0, + 1024, + 1021, + 0.48541068285928224, + 0 + ], + [ + 21.0, + 1024, + 1022, + 0.4889573481378322, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 2, + "conductance": 0.08850901510401155, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.5557666550419667, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262922 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.830078125, + "solid_material_fidelity": 0.8291203235591507, + "structural_iou": 0.9044265593561368, + "defect_density": 0.169921875, + "growth_time": 19.700000000000003, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 8, + "feed_consumed": 460.74000000000035, + "feed_supplied": 235.98555816399153, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.5183586103994648, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9111838816582501, + 0 + ], + [ + 2.0, + 40, + 0, + 0.8402980220026627, + 0 + ], + [ + 3.0, + 98, + 0, + 0.7635876671542853, + 0 + ], + [ + 4.0, + 181, + 1, + 0.6936623136627708, + 0 + ], + [ + 5.0, + 275, + 13, + 0.6322306900094573, + 0 + ], + [ + 6.0, + 399, + 42, + 0.5756829654969181, + 0 + ], + [ + 7.0, + 558, + 108, + 0.5286418192686254, + 0 + ], + [ + 8.0, + 713, + 191, + 0.5321422276168574, + 0 + ], + [ + 9.0, + 855, + 286, + 0.49652813577400734, + 0 + ], + [ + 10.0, + 948, + 419, + 0.5012090239877326, + 0 + ], + [ + 11.0, + 1002, + 577, + 0.49931242524513475, + 0 + ], + [ + 12.0, + 1015, + 729, + 0.5029148570037908, + 0 + ], + [ + 13.0, + 1019, + 866, + 0.5064271789125923, + 0 + ], + [ + 14.0, + 1020, + 955, + 0.5098528211688594, + 0 + ], + [ + 15.0, + 1021, + 1005, + 0.5033345673245049, + 0 + ], + [ + 16.0, + 1024, + 1016, + 0.5067531698705441, + 0 + ], + [ + 17.0, + 1024, + 1019, + 0.5100839838440884, + 0 + ], + [ + 18.0, + 1024, + 1020, + 0.5133306140100895, + 0 + ], + [ + 19.0, + 1024, + 1021, + 0.516496485191534, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 3, + "conductance": 0.047411016139700016, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.7620405756086234, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262923 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8330078125, + "solid_material_fidelity": 0.8361981799797775, + "structural_iou": 0.9278557114228457, + "defect_density": 0.1669921875, + "growth_time": 18.1, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 16, + "feed_consumed": 460.7400000000002, + "feed_supplied": 232.85529573692511, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.4180376934295386, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 3.410605131648481e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 16, + 0, + 0.9028253992746771, + 0 + ], + [ + 2.0, + 36, + 0, + 0.8318672281357282, + 0 + ], + [ + 3.0, + 84, + 0, + 0.7682735806428309, + 0 + ], + [ + 4.0, + 155, + 2, + 0.7045411713580778, + 0 + ], + [ + 5.0, + 242, + 18, + 0.6406064377838845, + 0 + ], + [ + 6.0, + 347, + 41, + 0.5861692687700782, + 0 + ], + [ + 7.0, + 482, + 89, + 0.5758077288533803, + 0 + ], + [ + 8.0, + 656, + 161, + 0.5567222410818303, + 0 + ], + [ + 9.0, + 802, + 249, + 0.5588898676053772, + 0 + ], + [ + 10.0, + 916, + 362, + 0.5361370715381069, + 0 + ], + [ + 11.0, + 987, + 495, + 0.53946597848335, + 0 + ], + [ + 12.0, + 1012, + 679, + 0.5293504560771356, + 0 + ], + [ + 13.0, + 1018, + 814, + 0.5325473840716308, + 0 + ], + [ + 14.0, + 1023, + 929, + 0.45840040453723807, + 0 + ], + [ + 15.0, + 1024, + 992, + 0.39906842882160376, + 0 + ], + [ + 16.0, + 1024, + 1013, + 0.40557149536214043, + 0 + ], + [ + 17.0, + 1024, + 1018, + 0.4118924103696682, + 0 + ], + [ + 18.0, + 1024, + 1024, + 0.4180376934295386, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 4, + "conductance": 0.05281983530211287, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.734893309016987, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262924 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8115234375, + "solid_material_fidelity": 0.8119312436804853, + "structural_iou": 0.9006024096385542, + "defect_density": 0.1884765625, + "growth_time": 16.900000000000002, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 13, + "feed_consumed": 460.74000000000035, + "feed_supplied": 233.1120175823164, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.5092622981556452, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.902350572656609, + 0 + ], + [ + 2.0, + 46, + 0, + 0.8385832115128783, + 0 + ], + [ + 3.0, + 100, + 0, + 0.7611443608347332, + 0 + ], + [ + 4.0, + 168, + 2, + 0.6905650596411214, + 0 + ], + [ + 5.0, + 255, + 17, + 0.6277328430977875, + 0 + ], + [ + 6.0, + 355, + 48, + 0.593447040513571, + 0 + ], + [ + 7.0, + 503, + 106, + 0.5919917110213814, + 0 + ], + [ + 8.0, + 647, + 177, + 0.5568794250486756, + 0 + ], + [ + 9.0, + 796, + 266, + 0.5283917943730343, + 0 + ], + [ + 10.0, + 913, + 366, + 0.5354368023377758, + 0 + ], + [ + 11.0, + 980, + 511, + 0.5422261892556128, + 0 + ], + [ + 12.0, + 1017, + 660, + 0.543324613565793, + 0 + ], + [ + 13.0, + 1024, + 811, + 0.5036072675947255, + 0 + ], + [ + 14.0, + 1024, + 922, + 0.4984268920011376, + 0 + ], + [ + 15.0, + 1024, + 984, + 0.502391374272527, + 0 + ], + [ + 16.0, + 1024, + 1017, + 0.5062495672668885, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 5, + "conductance": 0.05811734471303077, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.7083047143659993, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262925 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8310546875, + "solid_material_fidelity": 0.8341759352881699, + "structural_iou": 0.9008016032064128, + "defect_density": 0.1689453125, + "growth_time": 16.3, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 19, + "feed_consumed": 460.7400000000006, + "feed_supplied": 230.62090100503102, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.4932400377948882, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 15, + 0, + 0.9029218580204309, + 0 + ], + [ + 2.0, + 48, + 0, + 0.8317789794367744, + 0 + ], + [ + 3.0, + 105, + 0, + 0.7631358477206476, + 0 + ], + [ + 4.0, + 159, + 1, + 0.6988921413185537, + 0 + ], + [ + 5.0, + 250, + 18, + 0.6293844710657905, + 0 + ], + [ + 6.0, + 365, + 55, + 0.6014196225779326, + 0 + ], + [ + 7.0, + 515, + 110, + 0.5800603044608235, + 0 + ], + [ + 8.0, + 675, + 166, + 0.5632737241925202, + 0 + ], + [ + 9.0, + 836, + 262, + 0.5234758149158888, + 0 + ], + [ + 10.0, + 931, + 378, + 0.5269613267438445, + 0 + ], + [ + 11.0, + 999, + 531, + 0.5130320948350422, + 0 + ], + [ + 12.0, + 1023, + 691, + 0.5062573261426428, + 0 + ], + [ + 13.0, + 1024, + 844, + 0.491765250217739, + 0 + ], + [ + 14.0, + 1024, + 938, + 0.4858680969032441, + 0 + ], + [ + 15.0, + 1024, + 1002, + 0.489265034546675, + 0 + ], + [ + 16.0, + 1024, + 1023, + 0.49258502725437137, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 6, + "conductance": 0.0009634337152858282, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.9951644543611313, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262926 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8408203125, + "solid_material_fidelity": 0.840242669362993, + "structural_iou": 0.9225352112676056, + "defect_density": 0.1591796875, + "growth_time": 19.1, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 1024, + "transduction_defects": 14, + "feed_consumed": 460.7400000000002, + "feed_supplied": 235.7212032543991, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 20470.0, + "min_concentration": 0.511228928192452, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 20, + 0, + 0.9078308501267978, + 0 + ], + [ + 2.0, + 61, + 0, + 0.8375217427856892, + 0 + ], + [ + 3.0, + 109, + 0, + 0.7575637583635209, + 0 + ], + [ + 4.0, + 163, + 3, + 0.6856605750659724, + 0 + ], + [ + 5.0, + 256, + 24, + 0.62457598324988, + 0 + ], + [ + 6.0, + 373, + 64, + 0.6091120341073654, + 0 + ], + [ + 7.0, + 494, + 115, + 0.5735505774981585, + 0 + ], + [ + 8.0, + 658, + 169, + 0.5289559682672949, + 0 + ], + [ + 9.0, + 796, + 272, + 0.4941093837422549, + 0 + ], + [ + 10.0, + 903, + 386, + 0.49815753868942647, + 0 + ], + [ + 11.0, + 980, + 509, + 0.5014466911231036, + 0 + ], + [ + 12.0, + 1007, + 679, + 0.5046714133837132, + 0 + ], + [ + 13.0, + 1015, + 808, + 0.4894012578705066, + 0 + ], + [ + 14.0, + 1022, + 915, + 0.49329249967569344, + 0 + ], + [ + 15.0, + 1023, + 984, + 0.4970768227232264, + 0 + ], + [ + 16.0, + 1024, + 1008, + 0.5007585669763195, + 0 + ], + [ + 17.0, + 1024, + 1016, + 0.504341882432008, + 0 + ], + [ + 18.0, + 1024, + 1022, + 0.5078307377010765, + 0 + ], + [ + 19.0, + 1024, + 1024, + 0.511228928192452, + 0 + ] + ], + "case": "no_repair", + "dim": 2, + "replicate": 7, + "conductance": 0.06453195644735946, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6761092998763092, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262919 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8857421875, + "solid_material_fidelity": 0.884732052578362, + "structural_iou": 0.9526209677419355, + "defect_density": 0.1142578125, + "growth_time": 12.3, + "repair_attempts": 20, + "successful_repairs": 19, + "repair_overhead": 0.01953125, + "attachment_events": 1024, + "transduction_defects": 12, + "feed_consumed": 72.82000000000006, + "feed_supplied": 23.08674725462449, + "waste_proxy": 1.2000000000000004, + "fuel_turnover_kBT_proxy": 20670.0, + "min_concentration": 0.8725462670240395, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 10, + 0.9299999999999999, + 0 + ], + [ + 2.0, + 52, + 48, + 0.8652000885936373, + 2 + ], + [ + 3.0, + 98, + 90, + 0.8697635812649254, + 2 + ], + [ + 4.0, + 184, + 177, + 0.8714467014657646, + 4 + ], + [ + 5.0, + 288, + 279, + 0.8688390077583324, + 5 + ], + [ + 6.0, + 415, + 399, + 0.8709925125045699, + 7 + ], + [ + 7.0, + 557, + 537, + 0.8730842295742133, + 8 + ], + [ + 8.0, + 736, + 717, + 0.8665713212148952, + 10 + ], + [ + 9.0, + 895, + 879, + 0.8683816084022402, + 15 + ], + [ + 10.0, + 982, + 979, + 0.8689262179838279, + 16 + ], + [ + 11.0, + 1016, + 1015, + 0.870608975024622, + 18 + ], + [ + 12.0, + 1023, + 1023, + 0.8722294077930174, + 19 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 0, + "conductance": 0.07215684019419029, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6378394399327736, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262920 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.892578125, + "solid_material_fidelity": 0.8928210313447927, + "structural_iou": 0.9405840886203424, + "defect_density": 0.107421875, + "growth_time": 13.100000000000001, + "repair_attempts": 12, + "successful_repairs": 12, + "repair_overhead": 0.01171875, + "attachment_events": 1024, + "transduction_defects": 12, + "feed_consumed": 72.3400000000001, + "feed_supplied": 22.985297398360405, + "waste_proxy": 0.7200000000000002, + "fuel_turnover_kBT_proxy": 20590.0, + "min_concentration": 0.868540634363665, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 11, + 0.9272286403932428, + 0 + ], + [ + 2.0, + 37, + 35, + 0.927348318295965, + 0 + ], + [ + 3.0, + 95, + 86, + 0.8589362378403684, + 1 + ], + [ + 4.0, + 171, + 163, + 0.8613551384387133, + 2 + ], + [ + 5.0, + 276, + 264, + 0.8637056328688867, + 4 + ], + [ + 6.0, + 405, + 395, + 0.8659900200096085, + 5 + ], + [ + 7.0, + 565, + 548, + 0.8677898730296105, + 7 + ], + [ + 8.0, + 729, + 717, + 0.8703692459710498, + 9 + ], + [ + 9.0, + 886, + 875, + 0.8672154384664383, + 10 + ], + [ + 10.0, + 987, + 984, + 0.8615362695695075, + 12 + ], + [ + 11.0, + 1015, + 1015, + 0.8639403801260508, + 12 + ], + [ + 12.0, + 1022, + 1021, + 0.8662743560195635, + 12 + ], + [ + 13.0, + 1024, + 1024, + 0.868540634363665, + 12 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 1, + "conductance": 0.12047772979364987, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.3953132928178129, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262921 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.87109375, + "solid_material_fidelity": 0.8736097067745198, + "structural_iou": 0.9226907630522089, + "defect_density": 0.12890625, + "growth_time": 14.600000000000001, + "repair_attempts": 18, + "successful_repairs": 18, + "repair_overhead": 0.017578125, + "attachment_events": 1024, + "transduction_defects": 12, + "feed_consumed": 72.70000000000009, + "feed_supplied": 23.285086322239238, + "waste_proxy": 1.0800000000000003, + "fuel_turnover_kBT_proxy": 20650.0, + "min_concentration": 0.8709223344635789, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 12, + 10, + 0.9265283805241324, + 0 + ], + [ + 2.0, + 32, + 28, + 0.9222382515442049, + 0 + ], + [ + 3.0, + 68, + 62, + 0.8699999999999999, + 1 + ], + [ + 4.0, + 133, + 127, + 0.8751007653060192, + 3 + ], + [ + 5.0, + 219, + 207, + 0.8794713341441344, + 4 + ], + [ + 6.0, + 318, + 309, + 0.8660140260197782, + 7 + ], + [ + 7.0, + 468, + 449, + 0.8682646480936635, + 10 + ], + [ + 8.0, + 658, + 637, + 0.8651312334218304, + 14 + ], + [ + 9.0, + 809, + 797, + 0.8699925828708662, + 15 + ], + [ + 10.0, + 934, + 923, + 0.8605376316171747, + 18 + ], + [ + 11.0, + 990, + 989, + 0.8629739549832013, + 18 + ], + [ + 12.0, + 1009, + 1008, + 0.8653344425992712, + 18 + ], + [ + 13.0, + 1016, + 1016, + 0.8676219503617082, + 18 + ], + [ + 14.0, + 1021, + 1020, + 0.8698392168000086, + 18 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 2, + "conductance": 0.060652779024659195, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6955791805449251, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262922 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.88671875, + "solid_material_fidelity": 0.8887765419615774, + "structural_iou": 0.9336683417085427, + "defect_density": 0.11328125, + "growth_time": 12.3, + "repair_attempts": 28, + "successful_repairs": 27, + "repair_overhead": 0.02734375, + "attachment_events": 1024, + "transduction_defects": 16, + "feed_consumed": 73.30000000000007, + "feed_supplied": 23.364895338212172, + "waste_proxy": 1.6800000000000004, + "fuel_turnover_kBT_proxy": 20750.0, + "min_concentration": 0.8704187899695007, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 9, + 0.9272830939283125, + 0 + ], + [ + 2.0, + 40, + 38, + 0.9255987409270399, + 0 + ], + [ + 3.0, + 98, + 95, + 0.87466110811695, + 2 + ], + [ + 4.0, + 189, + 180, + 0.8766807175981899, + 3 + ], + [ + 5.0, + 272, + 265, + 0.8786492855930104, + 3 + ], + [ + 6.0, + 411, + 395, + 0.8592154594771275, + 9 + ], + [ + 7.0, + 583, + 565, + 0.8616392227437167, + 12 + ], + [ + 8.0, + 739, + 725, + 0.8614651364968934, + 18 + ], + [ + 9.0, + 879, + 864, + 0.8639013037960649, + 21 + ], + [ + 10.0, + 969, + 965, + 0.8654412173010749, + 26 + ], + [ + 11.0, + 1010, + 1008, + 0.8677434903441267, + 27 + ], + [ + 12.0, + 1023, + 1022, + 0.8699793797963158, + 27 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 3, + "conductance": 0.12684356617270653, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.363362685472328, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262923 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.865234375, + "solid_material_fidelity": 0.865520728008089, + "structural_iou": 0.9386317907444668, + "defect_density": 0.134765625, + "growth_time": 14.3, + "repair_attempts": 16, + "successful_repairs": 16, + "repair_overhead": 0.015625, + "attachment_events": 1024, + "transduction_defects": 17, + "feed_consumed": 72.5800000000001, + "feed_supplied": 23.237446366803987, + "waste_proxy": 0.9600000000000004, + "fuel_turnover_kBT_proxy": 20630.0, + "min_concentration": 0.8778333904410605, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 16, + 13, + 0.9251335086897534, + 1 + ], + [ + 2.0, + 36, + 35, + 0.922798917651855, + 1 + ], + [ + 3.0, + 88, + 81, + 0.8802813472259307, + 2 + ], + [ + 4.0, + 168, + 161, + 0.8816454002839723, + 2 + ], + [ + 5.0, + 271, + 262, + 0.8751538571976315, + 5 + ], + [ + 6.0, + 379, + 365, + 0.8726934303041495, + 8 + ], + [ + 7.0, + 509, + 487, + 0.8657176966904025, + 11 + ], + [ + 8.0, + 670, + 650, + 0.870110012276298, + 14 + ], + [ + 9.0, + 832, + 820, + 0.8666277901119354, + 15 + ], + [ + 10.0, + 953, + 946, + 0.8689178790136652, + 15 + ], + [ + 11.0, + 1001, + 998, + 0.871141182855088, + 16 + ], + [ + 12.0, + 1011, + 1011, + 0.8733000186578669, + 16 + ], + [ + 13.0, + 1016, + 1016, + 0.8753966155446115, + 16 + ], + [ + 14.0, + 1023, + 1023, + 0.8774331182191932, + 16 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 4, + "conductance": 0.11839677091459058, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.40575778056268597, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262924 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8955078125, + "solid_material_fidelity": 0.8968655207280081, + "structural_iou": 0.9416498993963782, + "defect_density": 0.1044921875, + "growth_time": 12.200000000000001, + "repair_attempts": 15, + "successful_repairs": 15, + "repair_overhead": 0.0146484375, + "attachment_events": 1024, + "transduction_defects": 12, + "feed_consumed": 72.52000000000007, + "feed_supplied": 22.846670557292168, + "waste_proxy": 0.9000000000000004, + "fuel_turnover_kBT_proxy": 20620.0, + "min_concentration": 0.8642291857315904, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 13, + 0.9248603256907146, + 0 + ], + [ + 2.0, + 45, + 38, + 0.874390272948781, + 1 + ], + [ + 3.0, + 97, + 94, + 0.8759560750761384, + 1 + ], + [ + 4.0, + 172, + 161, + 0.8774736666803573, + 3 + ], + [ + 5.0, + 260, + 254, + 0.8723248817227242, + 5 + ], + [ + 6.0, + 351, + 338, + 0.8743075120676881, + 5 + ], + [ + 7.0, + 477, + 465, + 0.8644982188394008, + 7 + ], + [ + 8.0, + 635, + 617, + 0.8687203240090201, + 9 + ], + [ + 9.0, + 812, + 793, + 0.8586991360916839, + 13 + ], + [ + 10.0, + 948, + 937, + 0.8607512380039741, + 14 + ], + [ + 11.0, + 1010, + 1007, + 0.8615470038479903, + 15 + ], + [ + 12.0, + 1024, + 1023, + 0.8639890460910294, + 15 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 5, + "conductance": 0.08935200554942244, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.5515356231533791, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262925 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.890625, + "solid_material_fidelity": 0.8897876643073812, + "structural_iou": 0.938508064516129, + "defect_density": 0.109375, + "growth_time": 12.700000000000001, + "repair_attempts": 13, + "successful_repairs": 13, + "repair_overhead": 0.0126953125, + "attachment_events": 1024, + "transduction_defects": 15, + "feed_consumed": 72.39999999999999, + "feed_supplied": 22.88835304567738, + "waste_proxy": 0.7800000000000002, + "fuel_turnover_kBT_proxy": 20600.0, + "min_concentration": 0.8765595269096427, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 15, + 14, + 0.9299999999999999, + 0 + ], + [ + 2.0, + 46, + 44, + 0.9225139068339034, + 0 + ], + [ + 3.0, + 84, + 80, + 0.9195942111314853, + 0 + ], + [ + 4.0, + 148, + 141, + 0.9175794223226688, + 1 + ], + [ + 5.0, + 263, + 249, + 0.8675420010595398, + 3 + ], + [ + 6.0, + 368, + 359, + 0.8748166797513, + 6 + ], + [ + 7.0, + 494, + 485, + 0.8767484535956619, + 7 + ], + [ + 8.0, + 659, + 644, + 0.8682479052747571, + 9 + ], + [ + 9.0, + 823, + 808, + 0.8671390199718486, + 10 + ], + [ + 10.0, + 953, + 943, + 0.869844891250153, + 12 + ], + [ + 11.0, + 1007, + 1000, + 0.8724842031031601, + 12 + ], + [ + 12.0, + 1022, + 1022, + 0.8750521219453539, + 13 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 6, + "conductance": 0.11933541721115362, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.4010466448262341, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262926 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.884765625, + "solid_material_fidelity": 0.8867542972699697, + "structural_iou": 0.9386934673366835, + "defect_density": 0.115234375, + "growth_time": 13.200000000000001, + "repair_attempts": 16, + "successful_repairs": 16, + "repair_overhead": 0.015625, + "attachment_events": 1024, + "transduction_defects": 14, + "feed_consumed": 72.58000000000006, + "feed_supplied": 23.022914199719576, + "waste_proxy": 0.9600000000000002, + "fuel_turnover_kBT_proxy": 20630.0, + "min_concentration": 0.8749421161494032, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 20, + 15, + 0.9210536160983653, + 0 + ], + [ + 2.0, + 61, + 56, + 0.9221848063273577, + 0 + ], + [ + 3.0, + 117, + 109, + 0.9176293873359219, + 1 + ], + [ + 4.0, + 200, + 191, + 0.9177045840432647, + 1 + ], + [ + 5.0, + 293, + 280, + 0.8783720797771578, + 2 + ], + [ + 6.0, + 406, + 400, + 0.8627717921308763, + 4 + ], + [ + 7.0, + 541, + 528, + 0.8646638800364412, + 7 + ], + [ + 8.0, + 703, + 691, + 0.8664947924699353, + 11 + ], + [ + 9.0, + 829, + 818, + 0.8682652465233464, + 12 + ], + [ + 10.0, + 926, + 918, + 0.8699776786691323, + 16 + ], + [ + 11.0, + 980, + 974, + 0.8716344205167085, + 16 + ], + [ + 12.0, + 1017, + 1012, + 0.8732377035165717, + 16 + ], + [ + 13.0, + 1024, + 1023, + 0.8747896634469171, + 16 + ] + ], + "case": "early_lock", + "dim": 2, + "replicate": 7, + "conductance": 0.11273551333062806, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.4341720544108052, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262919 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9462890625, + "solid_material_fidelity": 0.9453993933265925, + "structural_iou": 0.9696969696969697, + "defect_density": 0.0537109375, + "growth_time": 16.900000000000002, + "repair_attempts": 159, + "successful_repairs": 155, + "repair_overhead": 0.1552734375, + "attachment_events": 1024, + "transduction_defects": 13, + "feed_consumed": 470.2800000000005, + "feed_supplied": 87.09056513783852, + "waste_proxy": 9.54, + "fuel_turnover_kBT_proxy": 22060.0, + "min_concentration": 0.39881966329465374, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9219481394990717, + 0 + ], + [ + 2.0, + 43, + 0, + 0.8377368634519989, + 3 + ], + [ + 3.0, + 95, + 0, + 0.7476087703219418, + 7 + ], + [ + 4.0, + 161, + 1, + 0.6914257575047112, + 14 + ], + [ + 5.0, + 257, + 13, + 0.6078656671364989, + 28 + ], + [ + 6.0, + 367, + 43, + 0.5499089995984496, + 41 + ], + [ + 7.0, + 509, + 98, + 0.5034908730192731, + 57 + ], + [ + 8.0, + 692, + 169, + 0.4589349415876621, + 78 + ], + [ + 9.0, + 844, + 273, + 0.40590935300367026, + 91 + ], + [ + 10.0, + 949, + 378, + 0.38837941136021603, + 114 + ], + [ + 11.0, + 1008, + 531, + 0.3924541201547328, + 134 + ], + [ + 12.0, + 1022, + 713, + 0.39639728452218687, + 148 + ], + [ + 13.0, + 1024, + 854, + 0.400213894293206, + 154 + ], + [ + 14.0, + 1024, + 959, + 0.387855429472513, + 155 + ], + [ + 15.0, + 1024, + 1009, + 0.39212374674996864, + 155 + ], + [ + 16.0, + 1024, + 1022, + 0.39589018317266844, + 155 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 0, + "conductance": 0.15666779335442027, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.21367266591724077, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262920 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.953125, + "solid_material_fidelity": 0.9514661274014156, + "structural_iou": 0.9757330637007078, + "defect_density": 0.046875, + "growth_time": 16.8, + "repair_attempts": 145, + "successful_repairs": 142, + "repair_overhead": 0.1416015625, + "attachment_events": 1024, + "transduction_defects": 25, + "feed_consumed": 469.4400000000003, + "feed_supplied": 87.35312689998003, + "waste_proxy": 8.7, + "fuel_turnover_kBT_proxy": 21920.0, + "min_concentration": 0.3462205576146515, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.9084660149687533, + 0 + ], + [ + 2.0, + 38, + 0, + 0.8359932072354361, + 2 + ], + [ + 3.0, + 77, + 0, + 0.7800749632291321, + 4 + ], + [ + 4.0, + 120, + 1, + 0.7091162748918501, + 9 + ], + [ + 5.0, + 197, + 15, + 0.6342374559553087, + 16 + ], + [ + 6.0, + 300, + 41, + 0.5673108900130909, + 22 + ], + [ + 7.0, + 406, + 84, + 0.49945262206221586, + 33 + ], + [ + 8.0, + 572, + 125, + 0.48791903605908804, + 49 + ], + [ + 9.0, + 746, + 205, + 0.40475112925505974, + 73 + ], + [ + 10.0, + 901, + 307, + 0.36527641345995765, + 89 + ], + [ + 11.0, + 995, + 421, + 0.35989109349388404, + 109 + ], + [ + 12.0, + 1018, + 586, + 0.33907189968972806, + 122 + ], + [ + 13.0, + 1024, + 760, + 0.3277113056597163, + 134 + ], + [ + 14.0, + 1024, + 909, + 0.3329190475601728, + 140 + ], + [ + 15.0, + 1024, + 1003, + 0.3379717201998572, + 141 + ], + [ + 16.0, + 1024, + 1020, + 0.34287472301754757, + 142 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 1, + "conductance": 0.16284162051614412, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.18268576714741092, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262921 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9580078125, + "solid_material_fidelity": 0.9595551061678463, + "structural_iou": 0.9768145161290323, + "defect_density": 0.0419921875, + "growth_time": 18.8, + "repair_attempts": 155, + "successful_repairs": 150, + "repair_overhead": 0.1513671875, + "attachment_events": 1024, + "transduction_defects": 14, + "feed_consumed": 470.0400000000005, + "feed_supplied": 89.98948779777568, + "waste_proxy": 9.300000000000004, + "fuel_turnover_kBT_proxy": 22020.0, + "min_concentration": 0.37165762235336974, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 12, + 0, + 0.8980837803891495, + 1 + ], + [ + 2.0, + 31, + 0, + 0.8383376385011639, + 3 + ], + [ + 3.0, + 84, + 0, + 0.7738272679566592, + 7 + ], + [ + 4.0, + 160, + 3, + 0.7088418550103124, + 9 + ], + [ + 5.0, + 250, + 13, + 0.622498396582291, + 24 + ], + [ + 6.0, + 355, + 36, + 0.5304332805429293, + 32 + ], + [ + 7.0, + 490, + 88, + 0.4845295330996632, + 46 + ], + [ + 8.0, + 651, + 167, + 0.4455529732774552, + 63 + ], + [ + 9.0, + 833, + 262, + 0.448653135372947, + 93 + ], + [ + 10.0, + 935, + 363, + 0.42553441573835726, + 113 + ], + [ + 11.0, + 988, + 506, + 0.4292991818951007, + 125 + ], + [ + 12.0, + 1010, + 672, + 0.3791026328673133, + 138 + ], + [ + 13.0, + 1017, + 850, + 0.34647544333433894, + 143 + ], + [ + 14.0, + 1019, + 943, + 0.350274949594586, + 144 + ], + [ + 15.0, + 1024, + 990, + 0.35508941697280255, + 148 + ], + [ + 16.0, + 1024, + 1011, + 0.35975609270202324, + 149 + ], + [ + 17.0, + 1024, + 1017, + 0.36428013638000795, + 150 + ], + [ + 18.0, + 1024, + 1020, + 0.36866651044427745, + 150 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 2, + "conductance": 0.1641868045972687, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.17593418796375337, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262922 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.953125, + "solid_material_fidelity": 0.9534883720930233, + "structural_iou": 0.9656912209889001, + "defect_density": 0.046875, + "growth_time": 17.2, + "repair_attempts": 150, + "successful_repairs": 147, + "repair_overhead": 0.146484375, + "attachment_events": 1024, + "transduction_defects": 19, + "feed_consumed": 469.74000000000024, + "feed_supplied": 89.03673291188822, + "waste_proxy": 9.0, + "fuel_turnover_kBT_proxy": 21970.0, + "min_concentration": 0.3883476776051967, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": 2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9111838816582501, + 0 + ], + [ + 2.0, + 40, + 0, + 0.8402935371952123, + 0 + ], + [ + 3.0, + 98, + 0, + 0.7124730237417252, + 6 + ], + [ + 4.0, + 181, + 1, + 0.6767571634467796, + 12 + ], + [ + 5.0, + 275, + 13, + 0.6032848852571997, + 23 + ], + [ + 6.0, + 399, + 42, + 0.5221468914474865, + 39 + ], + [ + 7.0, + 556, + 108, + 0.475133022992827, + 56 + ], + [ + 8.0, + 691, + 191, + 0.4627905580058362, + 74 + ], + [ + 9.0, + 833, + 286, + 0.42405401915324914, + 96 + ], + [ + 10.0, + 952, + 419, + 0.42796272172802935, + 116 + ], + [ + 11.0, + 1003, + 569, + 0.4039520941229953, + 131 + ], + [ + 12.0, + 1017, + 705, + 0.38510360272048344, + 142 + ], + [ + 13.0, + 1022, + 851, + 0.38970980129196525, + 146 + ], + [ + 14.0, + 1024, + 960, + 0.38426633215565503, + 146 + ], + [ + 15.0, + 1024, + 1005, + 0.3795052819946765, + 147 + ], + [ + 16.0, + 1024, + 1018, + 0.3837897945573312, + 147 + ], + [ + 17.0, + 1024, + 1023, + 0.3879398696865328, + 147 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 3, + "conductance": 0.15893790513555722, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.20227880565591017, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262923 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9521484375, + "solid_material_fidelity": 0.9504550050556118, + "structural_iou": 0.9737108190091001, + "defect_density": 0.0478515625, + "growth_time": 17.1, + "repair_attempts": 156, + "successful_repairs": 156, + "repair_overhead": 0.15234375, + "attachment_events": 1024, + "transduction_defects": 21, + "feed_consumed": 470.10000000000076, + "feed_supplied": 88.54370816204452, + "waste_proxy": 9.36, + "fuel_turnover_kBT_proxy": 22030.0, + "min_concentration": 0.34944975780615467, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 16, + 0, + 0.902608819409942, + 1 + ], + [ + 2.0, + 36, + 0, + 0.8314038547050705, + 3 + ], + [ + 3.0, + 84, + 0, + 0.746749853375235, + 9 + ], + [ + 4.0, + 155, + 2, + 0.6928992279256732, + 12 + ], + [ + 5.0, + 258, + 18, + 0.6181368618701739, + 19 + ], + [ + 6.0, + 391, + 41, + 0.5294749314227692, + 35 + ], + [ + 7.0, + 524, + 89, + 0.4943361097319387, + 51 + ], + [ + 8.0, + 684, + 161, + 0.4619428812096594, + 76 + ], + [ + 9.0, + 833, + 266, + 0.4246923149058422, + 93 + ], + [ + 10.0, + 929, + 408, + 0.41946615670307386, + 124 + ], + [ + 11.0, + 993, + 538, + 0.42336804337959166, + 136 + ], + [ + 12.0, + 1015, + 699, + 0.3922986447966824, + 148 + ], + [ + 13.0, + 1023, + 846, + 0.35950969329503174, + 153 + ], + [ + 14.0, + 1024, + 933, + 0.3341197056137317, + 155 + ], + [ + 15.0, + 1024, + 994, + 0.33939745916521746, + 156 + ], + [ + 16.0, + 1024, + 1018, + 0.34450539448463235, + 156 + ], + [ + 17.0, + 1024, + 1024, + 0.34944975780615467, + 156 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 4, + "conductance": 0.17245865677768724, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.13441714522197756, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262924 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9453125, + "solid_material_fidelity": 0.9453993933265925, + "structural_iou": 0.9757820383451059, + "defect_density": 0.0546875, + "growth_time": 15.9, + "repair_attempts": 156, + "successful_repairs": 153, + "repair_overhead": 0.15234375, + "attachment_events": 1024, + "transduction_defects": 14, + "feed_consumed": 470.10000000000093, + "feed_supplied": 87.47915800351642, + "waste_proxy": 9.360000000000005, + "fuel_turnover_kBT_proxy": 22030.0, + "min_concentration": 0.35392393006486006, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": -5.684341886080801e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.902350572656609, + 0 + ], + [ + 2.0, + 46, + 0, + 0.8189751869657137, + 2 + ], + [ + 3.0, + 99, + 0, + 0.7354754536584952, + 10 + ], + [ + 4.0, + 181, + 2, + 0.67262293831859, + 17 + ], + [ + 5.0, + 268, + 17, + 0.5941056726389957, + 23 + ], + [ + 6.0, + 390, + 48, + 0.5208687368531293, + 39 + ], + [ + 7.0, + 558, + 104, + 0.4364832071726366, + 56 + ], + [ + 8.0, + 732, + 193, + 0.4208106849949767, + 81 + ], + [ + 9.0, + 873, + 280, + 0.4241842872816021, + 105 + ], + [ + 10.0, + 967, + 408, + 0.4274652088702233, + 124 + ], + [ + 11.0, + 1008, + 572, + 0.38236362870320334, + 138 + ], + [ + 12.0, + 1024, + 752, + 0.33948942345192706, + 143 + ], + [ + 13.0, + 1024, + 885, + 0.34340417019919883, + 150 + ], + [ + 14.0, + 1024, + 974, + 0.347234868848424, + 153 + ], + [ + 15.0, + 1024, + 1012, + 0.3509832805863369, + 153 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 5, + "conductance": 0.16816204217298944, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.1559821742260562, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262925 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.95703125, + "solid_material_fidelity": 0.9605662285136501, + "structural_iou": 0.9748490945674044, + "defect_density": 0.04296875, + "growth_time": 17.400000000000002, + "repair_attempts": 157, + "successful_repairs": 151, + "repair_overhead": 0.1533203125, + "attachment_events": 1024, + "transduction_defects": 12, + "feed_consumed": 470.16000000000037, + "feed_supplied": 87.41048946562168, + "waste_proxy": 9.420000000000003, + "fuel_turnover_kBT_proxy": 22040.0, + "min_concentration": 0.3895360096554689, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 15, + 0, + 0.9029218580157695, + 0 + ], + [ + 2.0, + 48, + 0, + 0.8317321380004531, + 1 + ], + [ + 3.0, + 105, + 0, + 0.7615634741776057, + 5 + ], + [ + 4.0, + 157, + 1, + 0.6473245021167783, + 10 + ], + [ + 5.0, + 225, + 18, + 0.5545032841255325, + 19 + ], + [ + 6.0, + 323, + 55, + 0.525900116649361, + 28 + ], + [ + 7.0, + 451, + 110, + 0.47332055424646874, + 41 + ], + [ + 8.0, + 582, + 163, + 0.4747331258837267, + 59 + ], + [ + 9.0, + 743, + 235, + 0.3884670145771172, + 79 + ], + [ + 10.0, + 895, + 333, + 0.3561892776129639, + 97 + ], + [ + 11.0, + 977, + 469, + 0.36152949875245377, + 121 + ], + [ + 12.0, + 1008, + 597, + 0.3666796068921075, + 138 + ], + [ + 13.0, + 1022, + 760, + 0.37164705516341223, + 146 + ], + [ + 14.0, + 1024, + 905, + 0.3764389846494776, + 150 + ], + [ + 15.0, + 1024, + 984, + 0.38103004128836254, + 151 + ], + [ + 16.0, + 1024, + 1009, + 0.38480609532234755, + 151 + ], + [ + 17.0, + 1024, + 1022, + 0.3884619975307567, + 151 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 6, + "conductance": 0.17065828632862623, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.14345333871944332, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20262926 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9580078125, + "solid_material_fidelity": 0.9575328614762386, + "structural_iou": 0.9808080808080808, + "defect_density": 0.0419921875, + "growth_time": 18.3, + "repair_attempts": 120, + "successful_repairs": 118, + "repair_overhead": 0.1171875, + "attachment_events": 1024, + "transduction_defects": 13, + "feed_consumed": 467.94000000000034, + "feed_supplied": 87.50098066943686, + "waste_proxy": 7.199999999999994, + "fuel_turnover_kBT_proxy": 21670.0, + "min_concentration": 0.29473716839497716, + "reservoir_site_fraction": 0.12109375, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 20, + 0, + 0.9069386937011856, + 1 + ], + [ + 2.0, + 61, + 0, + 0.8373638331477231, + 1 + ], + [ + 3.0, + 109, + 0, + 0.7565294193621314, + 6 + ], + [ + 4.0, + 163, + 3, + 0.671789195583804, + 9 + ], + [ + 5.0, + 255, + 24, + 0.587008501191314, + 15 + ], + [ + 6.0, + 362, + 64, + 0.4990288320417673, + 21 + ], + [ + 7.0, + 501, + 115, + 0.48030361281414125, + 32 + ], + [ + 8.0, + 651, + 169, + 0.4610312871592946, + 46 + ], + [ + 9.0, + 798, + 266, + 0.4319901312706215, + 59 + ], + [ + 10.0, + 919, + 374, + 0.4361338720275486, + 81 + ], + [ + 11.0, + 1002, + 517, + 0.41886303159679317, + 94 + ], + [ + 12.0, + 1021, + 669, + 0.3649999757591633, + 107 + ], + [ + 13.0, + 1023, + 816, + 0.32327510607898435, + 111 + ], + [ + 14.0, + 1023, + 927, + 0.32251377033081124, + 116 + ], + [ + 15.0, + 1024, + 1004, + 0.3288948870103976, + 117 + ], + [ + 16.0, + 1024, + 1022, + 0.335060220786406, + 118 + ], + [ + 17.0, + 1024, + 1023, + 0.341017825112096, + 118 + ], + [ + 18.0, + 1024, + 1023, + 0.3011328837642132, + 118 + ] + ], + "case": "no_internal_supply", + "dim": 2, + "replicate": 7, + "conductance": 0.16009919624573068, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.1964501990022699, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262919 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.88671875, + "solid_material_fidelity": 0.890798786653185, + "structural_iou": 0.9498495486459378, + "defect_density": 0.11328125, + "growth_time": 16.900000000000002, + "repair_attempts": 166, + "successful_repairs": 162, + "repair_overhead": 0.162109375, + "attachment_events": 1024, + "transduction_defects": 20, + "feed_consumed": 470.70000000000095, + "feed_supplied": 234.15684882859472, + "waste_proxy": 9.960000000000004, + "fuel_turnover_kBT_proxy": 22130.0, + "min_concentration": 0.41222300003655954, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9219481396555063, + 0 + ], + [ + 2.0, + 43, + 0, + 0.8568571382228162, + 3 + ], + [ + 3.0, + 95, + 0, + 0.7555463732298984, + 7 + ], + [ + 4.0, + 161, + 1, + 0.7132705502076397, + 15 + ], + [ + 5.0, + 266, + 13, + 0.6511382665382512, + 26 + ], + [ + 6.0, + 390, + 43, + 0.5695993155994818, + 42 + ], + [ + 7.0, + 513, + 98, + 0.5656576656253922, + 57 + ], + [ + 8.0, + 660, + 169, + 0.5621595853224801, + 76 + ], + [ + 9.0, + 788, + 275, + 0.5013970189547435, + 102 + ], + [ + 10.0, + 910, + 399, + 0.5045484652055034, + 115 + ], + [ + 11.0, + 981, + 530, + 0.49491231572389754, + 136 + ], + [ + 12.0, + 1014, + 672, + 0.4986001157596643, + 147 + ], + [ + 13.0, + 1024, + 800, + 0.5021960430711021, + 157 + ], + [ + 14.0, + 1024, + 916, + 0.5057035215768007, + 159 + ], + [ + 15.0, + 1024, + 984, + 0.48522311208078023, + 160 + ], + [ + 16.0, + 1024, + 1015, + 0.40813749158463575, + 162 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 0, + "conductance": 0.11560624782627554, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.41976362397025346, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262920 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9091796875, + "solid_material_fidelity": 0.9079878665318504, + "structural_iou": 0.9596367305751766, + "defect_density": 0.0908203125, + "growth_time": 17.400000000000002, + "repair_attempts": 137, + "successful_repairs": 132, + "repair_overhead": 0.1337890625, + "attachment_events": 1024, + "transduction_defects": 17, + "feed_consumed": 468.96000000000066, + "feed_supplied": 234.61759060962015, + "waste_proxy": 8.22, + "fuel_turnover_kBT_proxy": 21840.0, + "min_concentration": 0.4820459458269395, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.9084660149687533, + 0 + ], + [ + 2.0, + 38, + 0, + 0.8454261397387672, + 2 + ], + [ + 3.0, + 77, + 0, + 0.7806564867416621, + 4 + ], + [ + 4.0, + 120, + 1, + 0.7208464668197607, + 9 + ], + [ + 5.0, + 197, + 15, + 0.6575891503971497, + 16 + ], + [ + 6.0, + 303, + 41, + 0.6016289844617987, + 22 + ], + [ + 7.0, + 430, + 84, + 0.587720348685046, + 27 + ], + [ + 8.0, + 590, + 125, + 0.5459443802696704, + 41 + ], + [ + 9.0, + 758, + 205, + 0.46766863248532586, + 61 + ], + [ + 10.0, + 899, + 312, + 0.47406319415002535, + 80 + ], + [ + 11.0, + 980, + 445, + 0.47825214949355266, + 105 + ], + [ + 12.0, + 1014, + 605, + 0.48230959182615274, + 123 + ], + [ + 13.0, + 1023, + 775, + 0.4845889508583998, + 129 + ], + [ + 14.0, + 1024, + 910, + 0.4868623347553908, + 131 + ], + [ + 15.0, + 1024, + 983, + 0.47349189575059014, + 132 + ], + [ + 16.0, + 1024, + 1014, + 0.4774628568945265, + 132 + ], + [ + 17.0, + 1024, + 1023, + 0.48100006754582775, + 132 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 1, + "conductance": 0.07879858338119942, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6045040357499338, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262921 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8818359375, + "solid_material_fidelity": 0.8827098078867543, + "structural_iou": 0.9567404426559356, + "defect_density": 0.1181640625, + "growth_time": 21.6, + "repair_attempts": 181, + "successful_repairs": 179, + "repair_overhead": 0.1767578125, + "attachment_events": 1024, + "transduction_defects": 15, + "feed_consumed": 471.60000000000065, + "feed_supplied": 243.30896828506144, + "waste_proxy": 10.860000000000001, + "fuel_turnover_kBT_proxy": 22280.0, + "min_concentration": 0.4847038003330645, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 12, + 0, + 0.8980837804182138, + 1 + ], + [ + 2.0, + 31, + 0, + 0.8383439750887116, + 3 + ], + [ + 3.0, + 84, + 0, + 0.7744137909181611, + 7 + ], + [ + 4.0, + 156, + 3, + 0.715218081032255, + 10 + ], + [ + 5.0, + 239, + 13, + 0.6551437759376847, + 19 + ], + [ + 6.0, + 337, + 36, + 0.5867202241725682, + 25 + ], + [ + 7.0, + 480, + 88, + 0.5412672880225545, + 38 + ], + [ + 8.0, + 645, + 165, + 0.5431361601484751, + 73 + ], + [ + 9.0, + 806, + 248, + 0.542831822305095, + 104 + ], + [ + 10.0, + 926, + 347, + 0.5341153667356927, + 126 + ], + [ + 11.0, + 979, + 500, + 0.4534843759966536, + 146 + ], + [ + 12.0, + 995, + 661, + 0.4592575268090502, + 159 + ], + [ + 13.0, + 1000, + 819, + 0.4648534556095038, + 171 + ], + [ + 14.0, + 1005, + 937, + 0.47027914690812356, + 174 + ], + [ + 15.0, + 1014, + 980, + 0.46068022415013277, + 175 + ], + [ + 16.0, + 1021, + 995, + 0.4646135677444898, + 177 + ], + [ + 17.0, + 1022, + 1000, + 0.4684558138805165, + 179 + ], + [ + 18.0, + 1024, + 1006, + 0.472210255365194, + 179 + ], + [ + 19.0, + 1024, + 1016, + 0.4758800509421679, + 179 + ], + [ + 20.0, + 1024, + 1021, + 0.479468231045763, + 179 + ], + [ + 21.0, + 1024, + 1022, + 0.48297770329990164, + 179 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 2, + "conductance": 0.13090627810822694, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.34297163140177644, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262922 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.9052734375, + "solid_material_fidelity": 0.9049544994944388, + "structural_iou": 0.9616935483870968, + "defect_density": 0.0947265625, + "growth_time": 19.700000000000003, + "repair_attempts": 158, + "successful_repairs": 156, + "repair_overhead": 0.154296875, + "attachment_events": 1024, + "transduction_defects": 8, + "feed_consumed": 470.2200000000006, + "feed_supplied": 240.89117664148844, + "waste_proxy": 9.48, + "fuel_turnover_kBT_proxy": 22050.0, + "min_concentration": 0.5152165775500415, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9111838816582501, + 0 + ], + [ + 2.0, + 40, + 0, + 0.8402980220026627, + 0 + ], + [ + 3.0, + 98, + 0, + 0.7185294303853, + 6 + ], + [ + 4.0, + 181, + 1, + 0.6907507428679676, + 13 + ], + [ + 5.0, + 275, + 13, + 0.6305335172667359, + 24 + ], + [ + 6.0, + 399, + 42, + 0.5666187301170852, + 41 + ], + [ + 7.0, + 558, + 108, + 0.5254727867893144, + 52 + ], + [ + 8.0, + 713, + 191, + 0.52897107648311, + 75 + ], + [ + 9.0, + 855, + 286, + 0.4939813868379037, + 107 + ], + [ + 10.0, + 948, + 419, + 0.4986600269324294, + 129 + ], + [ + 11.0, + 1002, + 577, + 0.4955992035310406, + 142 + ], + [ + 12.0, + 1015, + 729, + 0.4991768834993459, + 147 + ], + [ + 13.0, + 1019, + 866, + 0.5026648440837753, + 152 + ], + [ + 14.0, + 1020, + 955, + 0.5060665205076265, + 154 + ], + [ + 15.0, + 1021, + 1005, + 0.5002608916621583, + 155 + ], + [ + 16.0, + 1024, + 1016, + 0.5036645842416655, + 155 + ], + [ + 17.0, + 1024, + 1019, + 0.5069805027081083, + 156 + ], + [ + 18.0, + 1024, + 1020, + 0.510212267481122, + 156 + ], + [ + 19.0, + 1024, + 1021, + 0.5133633178118278, + 156 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 3, + "conductance": 0.0757733271182264, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6196880224599479, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262923 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.880859375, + "solid_material_fidelity": 0.8837209302325582, + "structural_iou": 0.9487951807228916, + "defect_density": 0.119140625, + "growth_time": 18.1, + "repair_attempts": 150, + "successful_repairs": 148, + "repair_overhead": 0.146484375, + "attachment_events": 1024, + "transduction_defects": 16, + "feed_consumed": 469.74000000000046, + "feed_supplied": 237.5195730239961, + "waste_proxy": 9.0, + "fuel_turnover_kBT_proxy": 21970.0, + "min_concentration": 0.4176777565273367, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 16, + 0, + 0.9026088202399114, + 1 + ], + [ + 2.0, + 36, + 0, + 0.8314062062031993, + 3 + ], + [ + 3.0, + 84, + 0, + 0.747035126631004, + 9 + ], + [ + 4.0, + 155, + 2, + 0.693938495062769, + 12 + ], + [ + 5.0, + 242, + 18, + 0.6330300295939078, + 22 + ], + [ + 6.0, + 347, + 41, + 0.5822500357881563, + 35 + ], + [ + 7.0, + 482, + 89, + 0.5721215268770732, + 47 + ], + [ + 8.0, + 656, + 161, + 0.5487944840060314, + 65 + ], + [ + 9.0, + 802, + 249, + 0.5524775850520662, + 83 + ], + [ + 10.0, + 916, + 362, + 0.5299109098637947, + 105 + ], + [ + 11.0, + 987, + 495, + 0.5087692618335217, + 121 + ], + [ + 12.0, + 1012, + 679, + 0.4774559231542307, + 133 + ], + [ + 13.0, + 1018, + 814, + 0.4821050374424181, + 140 + ], + [ + 14.0, + 1023, + 929, + 0.4556473020381177, + 144 + ], + [ + 15.0, + 1024, + 992, + 0.3987128874089037, + 148 + ], + [ + 16.0, + 1024, + 1013, + 0.40521458481105616, + 148 + ], + [ + 17.0, + 1024, + 1018, + 0.41153403347207257, + 148 + ], + [ + 18.0, + 1024, + 1024, + 0.4176777565273367, + 148 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 4, + "conductance": 0.07016535212553904, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.647834867010358, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262924 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8876953125, + "solid_material_fidelity": 0.8867542972699697, + "structural_iou": 0.9566532258064516, + "defect_density": 0.1123046875, + "growth_time": 17.0, + "repair_attempts": 159, + "successful_repairs": 157, + "repair_overhead": 0.1552734375, + "attachment_events": 1024, + "transduction_defects": 15, + "feed_consumed": 470.2800000000008, + "feed_supplied": 238.09989011872244, + "waste_proxy": 9.540000000000004, + "fuel_turnover_kBT_proxy": 22060.0, + "min_concentration": 0.5039012529208233, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -5.684341886080801e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.902350572656609, + 0 + ], + [ + 2.0, + 46, + 0, + 0.8189841423833075, + 2 + ], + [ + 3.0, + 100, + 0, + 0.735525421330354, + 10 + ], + [ + 4.0, + 168, + 2, + 0.6774555102241416, + 15 + ], + [ + 5.0, + 255, + 17, + 0.621273192050091, + 23 + ], + [ + 6.0, + 355, + 48, + 0.5510402767101223, + 36 + ], + [ + 7.0, + 503, + 106, + 0.5555690566834364, + 49 + ], + [ + 8.0, + 647, + 177, + 0.556087701221661, + 67 + ], + [ + 9.0, + 796, + 266, + 0.5241993293126169, + 92 + ], + [ + 10.0, + 913, + 366, + 0.5312304881506328, + 108 + ], + [ + 11.0, + 991, + 511, + 0.5380639640482094, + 129 + ], + [ + 12.0, + 1015, + 660, + 0.5267320740453165, + 142 + ], + [ + 13.0, + 1024, + 811, + 0.4977805358025672, + 152 + ], + [ + 14.0, + 1024, + 922, + 0.4926290698665196, + 155 + ], + [ + 15.0, + 1024, + 996, + 0.49661672187719835, + 157 + ], + [ + 16.0, + 1024, + 1016, + 0.500497161187092, + 157 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 5, + "conductance": 0.12072520035719393, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.394071219611003, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262925 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8681640625, + "solid_material_fidelity": 0.8685540950455005, + "structural_iou": 0.937625754527163, + "defect_density": 0.1318359375, + "growth_time": 16.3, + "repair_attempts": 138, + "successful_repairs": 135, + "repair_overhead": 0.134765625, + "attachment_events": 1024, + "transduction_defects": 19, + "feed_consumed": 469.0200000000009, + "feed_supplied": 234.78091264745765, + "waste_proxy": 8.279999999999996, + "fuel_turnover_kBT_proxy": 21850.0, + "min_concentration": 0.48829572049854797, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 15, + 0, + 0.9029218580204309, + 0 + ], + [ + 2.0, + 48, + 0, + 0.8317789794367744, + 1 + ], + [ + 3.0, + 105, + 0, + 0.7626590578034423, + 5 + ], + [ + 4.0, + 159, + 1, + 0.6956534854319647, + 8 + ], + [ + 5.0, + 250, + 18, + 0.6251719855108648, + 18 + ], + [ + 6.0, + 365, + 55, + 0.5920635096565559, + 23 + ], + [ + 7.0, + 515, + 110, + 0.5764674204455018, + 40 + ], + [ + 8.0, + 675, + 166, + 0.5365835257264456, + 56 + ], + [ + 9.0, + 836, + 262, + 0.5184401525303006, + 74 + ], + [ + 10.0, + 931, + 378, + 0.5219473851926152, + 93 + ], + [ + 11.0, + 999, + 531, + 0.49733803168173757, + 109 + ], + [ + 12.0, + 1023, + 691, + 0.5000189655616167, + 122 + ], + [ + 13.0, + 1024, + 844, + 0.486925063699143, + 131 + ], + [ + 14.0, + 1024, + 938, + 0.48098975767143315, + 134 + ], + [ + 15.0, + 1024, + 1002, + 0.4843560117472282, + 135 + ], + [ + 16.0, + 1024, + 1023, + 0.48764647873692146, + 135 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 6, + "conductance": 0.10172726018021139, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.4894232976136319, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262926 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.876953125, + "solid_material_fidelity": 0.8756319514661274, + "structural_iou": 0.9445564516129032, + "defect_density": 0.123046875, + "growth_time": 19.1, + "repair_attempts": 130, + "successful_repairs": 130, + "repair_overhead": 0.126953125, + "attachment_events": 1024, + "transduction_defects": 14, + "feed_consumed": 468.54000000000053, + "feed_supplied": 240.16786435698467, + "waste_proxy": 7.799999999999995, + "fuel_turnover_kBT_proxy": 21770.0, + "min_concentration": 0.5080786374127066, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 20, + 0, + 0.9069386937014303, + 1 + ], + [ + 2.0, + 61, + 0, + 0.8374310020233905, + 1 + ], + [ + 3.0, + 109, + 0, + 0.7575290986375508, + 7 + ], + [ + 4.0, + 163, + 3, + 0.6856265287357574, + 9 + ], + [ + 5.0, + 256, + 24, + 0.6245311495290476, + 16 + ], + [ + 6.0, + 373, + 64, + 0.6082251236730346, + 23 + ], + [ + 7.0, + 494, + 115, + 0.5704004243536251, + 40 + ], + [ + 8.0, + 658, + 169, + 0.5253919024685577, + 59 + ], + [ + 9.0, + 796, + 272, + 0.49324023138397904, + 72 + ], + [ + 10.0, + 903, + 386, + 0.4960739375123772, + 91 + ], + [ + 11.0, + 980, + 509, + 0.4993601800490715, + 106 + ], + [ + 12.0, + 1007, + 679, + 0.5025817566508298, + 117 + ], + [ + 13.0, + 1015, + 808, + 0.4861953356975127, + 125 + ], + [ + 14.0, + 1022, + 915, + 0.4900966539498561, + 129 + ], + [ + 15.0, + 1023, + 984, + 0.49389075326919735, + 129 + ], + [ + 16.0, + 1024, + 1008, + 0.4975819552579185, + 130 + ], + [ + 17.0, + 1024, + 1016, + 0.5011743944848095, + 130 + ], + [ + 18.0, + 1024, + 1022, + 0.5046720268236832, + 130 + ], + [ + 19.0, + 1024, + 1024, + 0.5080786374127066, + 130 + ] + ], + "case": "common_mode", + "dim": 2, + "replicate": 7, + "conductance": 0.07184982779591793, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6393803580467967, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262919 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.86328125, + "solid_material_fidelity": 0.8645096056622852, + "structural_iou": 0.9206030150753769, + "defect_density": 0.13671875, + "growth_time": 19.6, + "repair_attempts": 162, + "successful_repairs": 159, + "repair_overhead": 0.158203125, + "attachment_events": 1024, + "transduction_defects": 112, + "feed_consumed": 470.46000000000015, + "feed_supplied": 240.33494780193598, + "waste_proxy": 9.720000000000006, + "fuel_turnover_kBT_proxy": 22090.0, + "min_concentration": 0.4876410546465327, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9219481396555063, + 0 + ], + [ + 2.0, + 43, + 0, + 0.8568571382228162, + 3 + ], + [ + 3.0, + 95, + 0, + 0.7555463732298984, + 7 + ], + [ + 4.0, + 161, + 1, + 0.7132705502076397, + 15 + ], + [ + 5.0, + 265, + 13, + 0.6511382665382512, + 28 + ], + [ + 6.0, + 409, + 43, + 0.5959020104426151, + 41 + ], + [ + 7.0, + 534, + 98, + 0.5724969150271604, + 55 + ], + [ + 8.0, + 710, + 169, + 0.5702162743952853, + 77 + ], + [ + 9.0, + 852, + 279, + 0.512711088187356, + 104 + ], + [ + 10.0, + 959, + 424, + 0.44949160639192626, + 120 + ], + [ + 11.0, + 999, + 555, + 0.45400706153514575, + 137 + ], + [ + 12.0, + 1015, + 731, + 0.4583923759618917, + 147 + ], + [ + 13.0, + 1021, + 866, + 0.4626529443631233, + 154 + ], + [ + 14.0, + 1022, + 963, + 0.4667939212723029, + 158 + ], + [ + 15.0, + 1022, + 1003, + 0.47082023208888363, + 158 + ], + [ + 16.0, + 1024, + 1015, + 0.4747365835852488, + 159 + ], + [ + 17.0, + 1024, + 1021, + 0.4785474739216899, + 159 + ], + [ + 18.0, + 1024, + 1022, + 0.48225720219282847, + 159 + ], + [ + 19.0, + 1024, + 1022, + 0.4858698775277495, + 159 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 0, + "conductance": 0.0011998399389380944, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.9939779139010603, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262920 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8681640625, + "solid_material_fidelity": 0.865520728008089, + "structural_iou": 0.9283551967709385, + "defect_density": 0.1318359375, + "growth_time": 16.8, + "repair_attempts": 140, + "successful_repairs": 137, + "repair_overhead": 0.13671875, + "attachment_events": 1024, + "transduction_defects": 106, + "feed_consumed": 469.1400000000003, + "feed_supplied": 236.5079900660078, + "waste_proxy": 8.399999999999997, + "fuel_turnover_kBT_proxy": 21870.0, + "min_concentration": 0.4760052032849923, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.9084660149687533, + 0 + ], + [ + 2.0, + 38, + 0, + 0.8454261397387672, + 2 + ], + [ + 3.0, + 77, + 0, + 0.7806564867416621, + 4 + ], + [ + 4.0, + 120, + 1, + 0.7208464668197607, + 9 + ], + [ + 5.0, + 197, + 15, + 0.6575891503971497, + 16 + ], + [ + 6.0, + 291, + 41, + 0.6016289844617987, + 22 + ], + [ + 7.0, + 403, + 84, + 0.5877203375814644, + 32 + ], + [ + 8.0, + 544, + 125, + 0.5595017750001183, + 46 + ], + [ + 9.0, + 717, + 205, + 0.48351241259466843, + 70 + ], + [ + 10.0, + 873, + 299, + 0.48078070903070336, + 91 + ], + [ + 11.0, + 968, + 417, + 0.4745179219255021, + 110 + ], + [ + 12.0, + 1013, + 560, + 0.4778167985195957, + 124 + ], + [ + 13.0, + 1024, + 736, + 0.48154349775722904, + 132 + ], + [ + 14.0, + 1024, + 881, + 0.4623810662642778, + 137 + ], + [ + 15.0, + 1024, + 975, + 0.4678580178555854, + 137 + ], + [ + 16.0, + 1024, + 1014, + 0.4726998095675449, + 137 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 1, + "conductance": 0.0423656830496061, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.7873634785062096, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262921 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.869140625, + "solid_material_fidelity": 0.8695652173913043, + "structural_iou": 0.9336016096579477, + "defect_density": 0.130859375, + "growth_time": 17.5, + "repair_attempts": 140, + "successful_repairs": 138, + "repair_overhead": 0.13671875, + "attachment_events": 1024, + "transduction_defects": 116, + "feed_consumed": 469.14000000000067, + "feed_supplied": 237.511061733089, + "waste_proxy": 8.399999999999997, + "fuel_turnover_kBT_proxy": 21870.0, + "min_concentration": 0.49712398312892253, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -3.410605131648481e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 12, + 0, + 0.8980837804182138, + 1 + ], + [ + 2.0, + 31, + 0, + 0.8383439750887116, + 3 + ], + [ + 3.0, + 84, + 0, + 0.7744137909181611, + 7 + ], + [ + 4.0, + 156, + 3, + 0.715218081032255, + 10 + ], + [ + 5.0, + 249, + 13, + 0.6551437759420308, + 16 + ], + [ + 6.0, + 342, + 36, + 0.587583105013158, + 25 + ], + [ + 7.0, + 496, + 88, + 0.5421346268851899, + 39 + ], + [ + 8.0, + 669, + 165, + 0.5325922272660673, + 55 + ], + [ + 9.0, + 839, + 263, + 0.5086624472175453, + 73 + ], + [ + 10.0, + 948, + 350, + 0.5119886276852612, + 101 + ], + [ + 11.0, + 995, + 508, + 0.5151865281896145, + 116 + ], + [ + 12.0, + 1013, + 688, + 0.488250833290292, + 128 + ], + [ + 13.0, + 1019, + 852, + 0.49369377366259426, + 134 + ], + [ + 14.0, + 1024, + 955, + 0.4836492944350776, + 135 + ], + [ + 15.0, + 1024, + 996, + 0.48773160654531916, + 136 + ], + [ + 16.0, + 1024, + 1013, + 0.4917129830047639, + 137 + ], + [ + 17.0, + 1024, + 1021, + 0.49559692726330035, + 137 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 2, + "conductance": 0.07195615739424358, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.6388466818661642, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262922 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.87890625, + "solid_material_fidelity": 0.8776541961577351, + "structural_iou": 0.9435483870967742, + "defect_density": 0.12109375, + "growth_time": 19.200000000000003, + "repair_attempts": 146, + "successful_repairs": 143, + "repair_overhead": 0.142578125, + "attachment_events": 1024, + "transduction_defects": 99, + "feed_consumed": 469.5000000000008, + "feed_supplied": 240.56965131934246, + "waste_proxy": 8.760000000000005, + "fuel_turnover_kBT_proxy": 21930.0, + "min_concentration": 0.40540442823676404, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -3.410605131648481e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 11, + 0, + 0.9111838816582501, + 0 + ], + [ + 2.0, + 40, + 0, + 0.8402980220026627, + 0 + ], + [ + 3.0, + 98, + 0, + 0.7185294303853, + 6 + ], + [ + 4.0, + 181, + 1, + 0.6907507428679676, + 13 + ], + [ + 5.0, + 275, + 13, + 0.6305335172667359, + 24 + ], + [ + 6.0, + 405, + 42, + 0.5666187301170852, + 35 + ], + [ + 7.0, + 547, + 108, + 0.5254727871414699, + 52 + ], + [ + 8.0, + 711, + 191, + 0.5289710773618285, + 75 + ], + [ + 9.0, + 870, + 286, + 0.5009649013572924, + 95 + ], + [ + 10.0, + 953, + 418, + 0.4496336939173695, + 112 + ], + [ + 11.0, + 1002, + 569, + 0.45527013643304537, + 126 + ], + [ + 12.0, + 1009, + 725, + 0.46074062833625556, + 136 + ], + [ + 13.0, + 1018, + 876, + 0.4586572170124907, + 139 + ], + [ + 14.0, + 1020, + 960, + 0.3703275843064592, + 142 + ], + [ + 15.0, + 1023, + 1003, + 0.37818143049449243, + 143 + ], + [ + 16.0, + 1024, + 1010, + 0.3851249073658715, + 143 + ], + [ + 17.0, + 1024, + 1018, + 0.39186719486822336, + 143 + ], + [ + 18.0, + 1024, + 1020, + 0.3984158641688261, + 143 + ], + [ + 19.0, + 1024, + 1023, + 0.4047781760887357, + 143 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 3, + "conductance": 0.10585227375899195, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.4687195469511083, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262923 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.869140625, + "solid_material_fidelity": 0.8675429726996967, + "structural_iou": 0.9324596774193549, + "defect_density": 0.130859375, + "growth_time": 19.3, + "repair_attempts": 148, + "successful_repairs": 145, + "repair_overhead": 0.14453125, + "attachment_events": 1024, + "transduction_defects": 109, + "feed_consumed": 469.62000000000097, + "feed_supplied": 238.0638317677757, + "waste_proxy": 8.88, + "fuel_turnover_kBT_proxy": 21950.0, + "min_concentration": 0.3757052775957043, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -5.684341886080801e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 16, + 0, + 0.9026088202399114, + 1 + ], + [ + 2.0, + 36, + 0, + 0.8314062062031993, + 3 + ], + [ + 3.0, + 84, + 0, + 0.747035126631004, + 9 + ], + [ + 4.0, + 155, + 2, + 0.693938495062769, + 12 + ], + [ + 5.0, + 242, + 18, + 0.6330300295939078, + 22 + ], + [ + 6.0, + 357, + 41, + 0.5822500357881563, + 34 + ], + [ + 7.0, + 492, + 89, + 0.5721215006759689, + 54 + ], + [ + 8.0, + 633, + 161, + 0.5492525609600205, + 72 + ], + [ + 9.0, + 795, + 249, + 0.5352747299228481, + 89 + ], + [ + 10.0, + 922, + 369, + 0.5258894107181267, + 107 + ], + [ + 11.0, + 981, + 501, + 0.5036093896084316, + 124 + ], + [ + 12.0, + 1008, + 651, + 0.4050258606928369, + 136 + ], + [ + 13.0, + 1017, + 811, + 0.3212481114827844, + 142 + ], + [ + 14.0, + 1020, + 929, + 0.3315076393627007, + 144 + ], + [ + 15.0, + 1022, + 985, + 0.34056404416877434, + 145 + ], + [ + 16.0, + 1024, + 1010, + 0.3493446094025843, + 145 + ], + [ + 17.0, + 1024, + 1019, + 0.35785955984138296, + 145 + ], + [ + 18.0, + 1024, + 1020, + 0.36611871076911795, + 145 + ], + [ + 19.0, + 1024, + 1022, + 0.3741314852652134, + 145 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 4, + "conductance": 0.12823222837616302, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.3563928863514889, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262924 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.8681640625, + "solid_material_fidelity": 0.8685540950455005, + "structural_iou": 0.9295774647887324, + "defect_density": 0.1318359375, + "growth_time": 16.7, + "repair_attempts": 171, + "successful_repairs": 169, + "repair_overhead": 0.1669921875, + "attachment_events": 1024, + "transduction_defects": 108, + "feed_consumed": 471.00000000000097, + "feed_supplied": 239.11397843423802, + "waste_proxy": 10.259999999999996, + "fuel_turnover_kBT_proxy": 22180.0, + "min_concentration": 0.4006171129929874, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 14, + 0, + 0.902350572656609, + 0 + ], + [ + 2.0, + 46, + 0, + 0.8189841423833075, + 2 + ], + [ + 3.0, + 100, + 0, + 0.735525421330354, + 10 + ], + [ + 4.0, + 168, + 2, + 0.6774555102241416, + 15 + ], + [ + 5.0, + 277, + 17, + 0.6212756169169437, + 27 + ], + [ + 6.0, + 410, + 48, + 0.5773949835430171, + 42 + ], + [ + 7.0, + 541, + 106, + 0.5798924318586259, + 69 + ], + [ + 8.0, + 700, + 177, + 0.551864993176921, + 85 + ], + [ + 9.0, + 852, + 294, + 0.4990155518397751, + 107 + ], + [ + 10.0, + 949, + 420, + 0.4537914995384569, + 129 + ], + [ + 11.0, + 994, + 556, + 0.4584071129454355, + 149 + ], + [ + 12.0, + 1020, + 720, + 0.42045858297805755, + 161 + ], + [ + 13.0, + 1024, + 863, + 0.3731675355386071, + 167 + ], + [ + 14.0, + 1024, + 953, + 0.3811049554237545, + 169 + ], + [ + 15.0, + 1024, + 997, + 0.3887970253230107, + 169 + ], + [ + 16.0, + 1024, + 1022, + 0.3962530587856563, + 169 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 5, + "conductance": 0.10216098535546278, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.4872463986257942, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262925 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.87109375, + "solid_material_fidelity": 0.8736097067745198, + "structural_iou": 0.929718875502008, + "defect_density": 0.12890625, + "growth_time": 15.9, + "repair_attempts": 151, + "successful_repairs": 149, + "repair_overhead": 0.1474609375, + "attachment_events": 1024, + "transduction_defects": 106, + "feed_consumed": 469.8000000000003, + "feed_supplied": 236.33770720107634, + "waste_proxy": 9.060000000000004, + "fuel_turnover_kBT_proxy": 21980.0, + "min_concentration": 0.4968860859648498, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -1.1368683772161603e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 15, + 0, + 0.9029218580204309, + 0 + ], + [ + 2.0, + 48, + 0, + 0.8317789794367744, + 1 + ], + [ + 3.0, + 105, + 0, + 0.7626590578034423, + 5 + ], + [ + 4.0, + 159, + 1, + 0.6956534854319647, + 8 + ], + [ + 5.0, + 245, + 18, + 0.6239590799158368, + 18 + ], + [ + 6.0, + 375, + 55, + 0.5918663660809008, + 30 + ], + [ + 7.0, + 495, + 110, + 0.5767018083963051, + 51 + ], + [ + 8.0, + 645, + 166, + 0.5599128418125601, + 74 + ], + [ + 9.0, + 827, + 256, + 0.5129560781540338, + 91 + ], + [ + 10.0, + 962, + 389, + 0.4701902899268928, + 113 + ], + [ + 11.0, + 1005, + 508, + 0.475109742558725, + 131 + ], + [ + 12.0, + 1024, + 668, + 0.4798906863877149, + 138 + ], + [ + 13.0, + 1024, + 842, + 0.4845384363596467, + 144 + ], + [ + 14.0, + 1024, + 967, + 0.489058085173156, + 148 + ], + [ + 15.0, + 1024, + 1008, + 0.4934545130729384, + 149 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 6, + "conductance": 0.07472692441626688, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.624939995628086, + "functional_pass": false + }, + { + "config": { + "n": 32, + "dim": 2, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20262926 + }, + "genome": { + "op": "paired_path", + "n": 32 + }, + "program_bytes": 27, + "completed_fraction": 1.0, + "material_fidelity": 0.875, + "solid_material_fidelity": 0.8776541961577351, + "structural_iou": 0.9327309236947792, + "defect_density": 0.125, + "growth_time": 17.7, + "repair_attempts": 114, + "successful_repairs": 113, + "repair_overhead": 0.111328125, + "attachment_events": 1024, + "transduction_defects": 110, + "feed_consumed": 467.5800000000005, + "feed_supplied": 237.9151931190327, + "waste_proxy": 6.839999999999997, + "fuel_turnover_kBT_proxy": 21610.0, + "min_concentration": 0.49474224437256054, + "reservoir_site_fraction": 0.296875, + "mass_balance_residual": -2.2737367544323206e-13, + "temporary_counter_bits_per_site": 10, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 20, + 0, + 0.9069386937014303, + 1 + ], + [ + 2.0, + 61, + 0, + 0.8374310020233905, + 1 + ], + [ + 3.0, + 109, + 0, + 0.7575290986375508, + 7 + ], + [ + 4.0, + 163, + 3, + 0.6856265287357574, + 9 + ], + [ + 5.0, + 244, + 24, + 0.6245311495290476, + 14 + ], + [ + 6.0, + 331, + 64, + 0.6082239476385166, + 21 + ], + [ + 7.0, + 475, + 115, + 0.5703880197989629, + 28 + ], + [ + 8.0, + 639, + 169, + 0.5254700221806594, + 44 + ], + [ + 9.0, + 789, + 247, + 0.493091820781459, + 56 + ], + [ + 10.0, + 896, + 342, + 0.4978265081477492, + 74 + ], + [ + 11.0, + 969, + 490, + 0.502429030684313, + 91 + ], + [ + 12.0, + 1006, + 658, + 0.506904342073807, + 95 + ], + [ + 13.0, + 1020, + 804, + 0.5112571945818286, + 105 + ], + [ + 14.0, + 1024, + 903, + 0.5154921477014285, + 111 + ], + [ + 15.0, + 1024, + 974, + 0.5196135763756713, + 112 + ], + [ + 16.0, + 1024, + 1008, + 0.48826611802992437, + 113 + ], + [ + 17.0, + 1024, + 1021, + 0.4923436486988004, + 113 + ] + ], + "case": "conversion_damage", + "dim": 2, + "replicate": 7, + "conductance": 0.08107313563891223, + "target_conductance": 0.19923991773371486, + "conductance_relative_error": 0.5930878884056412, + "functional_pass": false + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263919 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.963623046875, + "solid_material_fidelity": 0.9658997534921939, + "structural_iou": 0.956, + "defect_density": 0.036376953125, + "growth_time": 12.600000000000001, + "repair_attempts": 620, + "successful_repairs": 609, + "repair_overhead": 0.1513671875, + "attachment_events": 4096, + "transduction_defects": 61, + "feed_consumed": 1880.3399999999986, + "feed_supplied": 1198.9105576532518, + "waste_proxy": 37.2, + "fuel_turnover_kBT_proxy": 88110.0, + "min_concentration": 0.45641595570296095, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 48, + 0, + 0.9114392495036368, + 1 + ], + [ + 2.0, + 362, + 0, + 0.842465946250141, + 11 + ], + [ + 3.0, + 1152, + 0, + 0.7669987524119442, + 65 + ], + [ + 4.0, + 2575, + 4, + 0.6710028807965637, + 176 + ], + [ + 5.0, + 3675, + 62, + 0.6354599779429363, + 326 + ], + [ + 6.0, + 4041, + 431, + 0.5706537057149957, + 465 + ], + [ + 7.0, + 4092, + 1276, + 0.48559110950439355, + 555 + ], + [ + 8.0, + 4094, + 2723, + 0.42945785617366045, + 594 + ], + [ + 9.0, + 4096, + 3747, + 0.43807491297439705, + 605 + ], + [ + 10.0, + 4096, + 4051, + 0.4352628234771693, + 609 + ], + [ + 11.0, + 4096, + 4092, + 0.44447645279138226, + 609 + ], + [ + 12.0, + 4096, + 4094, + 0.452518204723928, + 609 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 0 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263920 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.9619140625, + "solid_material_fidelity": 0.9638455217748562, + "structural_iou": 0.9540367705835332, + "defect_density": 0.0380859375, + "growth_time": 12.3, + "repair_attempts": 642, + "successful_repairs": 634, + "repair_overhead": 0.15673828125, + "attachment_events": 4096, + "transduction_defects": 56, + "feed_consumed": 1881.6599999999994, + "feed_supplied": 1195.405519592947, + "waste_proxy": 38.52000000000001, + "fuel_turnover_kBT_proxy": 88330.0, + "min_concentration": 0.45187523815856206, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9250921535195618, + 0 + ], + [ + 2.0, + 239, + 0, + 0.8440787334093868, + 11 + ], + [ + 3.0, + 863, + 0, + 0.7711650905269751, + 49 + ], + [ + 4.0, + 2107, + 2, + 0.716515577828219, + 138 + ], + [ + 5.0, + 3489, + 45, + 0.628007589153886, + 296 + ], + [ + 6.0, + 4020, + 271, + 0.5656781605356344, + 448 + ], + [ + 7.0, + 4091, + 943, + 0.5010281559897357, + 539 + ], + [ + 8.0, + 4095, + 2239, + 0.47375638001413917, + 610 + ], + [ + 9.0, + 4096, + 3570, + 0.426601581135846, + 634 + ], + [ + 10.0, + 4096, + 4038, + 0.434849773116881, + 634 + ], + [ + 11.0, + 4096, + 4092, + 0.442773432981965, + 634 + ], + [ + 12.0, + 4096, + 4095, + 0.4503880811470352, + 634 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 1 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263921 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.96142578125, + "solid_material_fidelity": 0.9695973705834018, + "structural_iou": 0.9495631453534551, + "defect_density": 0.03857421875, + "growth_time": 11.3, + "repair_attempts": 668, + "successful_repairs": 653, + "repair_overhead": 0.1630859375, + "attachment_events": 4096, + "transduction_defects": 65, + "feed_consumed": 1883.2199999999996, + "feed_supplied": 1194.123451797374, + "waste_proxy": 40.07999999999999, + "fuel_turnover_kBT_proxy": 88590.0, + "min_concentration": 0.45586731560350713, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 40, + 0, + 0.9253127732402283, + 1 + ], + [ + 2.0, + 261, + 0, + 0.84879156291723, + 12 + ], + [ + 3.0, + 902, + 0, + 0.7735376263266915, + 49 + ], + [ + 4.0, + 2206, + 2, + 0.706797431321339, + 155 + ], + [ + 5.0, + 3560, + 49, + 0.6691516843645648, + 315 + ], + [ + 6.0, + 4049, + 296, + 0.5979336879252033, + 476 + ], + [ + 7.0, + 4095, + 1002, + 0.5294930341861327, + 563 + ], + [ + 8.0, + 4096, + 2360, + 0.47364242661996425, + 623 + ], + [ + 9.0, + 4096, + 3626, + 0.45961467544834206, + 647 + ], + [ + 10.0, + 4096, + 4058, + 0.4567706141308155, + 653 + ], + [ + 11.0, + 4096, + 4095, + 0.45351956083668155, + 653 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 2 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263922 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.96337890625, + "solid_material_fidelity": 0.9617912900575185, + "structural_iou": 0.9574468085106383, + "defect_density": 0.03662109375, + "growth_time": 11.4, + "repair_attempts": 650, + "successful_repairs": 637, + "repair_overhead": 0.15869140625, + "attachment_events": 4096, + "transduction_defects": 54, + "feed_consumed": 1882.1399999999994, + "feed_supplied": 1194.4997995420176, + "waste_proxy": 38.99999999999999, + "fuel_turnover_kBT_proxy": 88410.0, + "min_concentration": 0.39566129735994837, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 3.183231456205249e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 42, + 0, + 0.8964704510511073, + 2 + ], + [ + 2.0, + 284, + 0, + 0.8528361613876309, + 11 + ], + [ + 3.0, + 950, + 0, + 0.785400293929833, + 48 + ], + [ + 4.0, + 2298, + 2, + 0.7179008631243307, + 155 + ], + [ + 5.0, + 3612, + 54, + 0.6519411685611668, + 304 + ], + [ + 6.0, + 4042, + 324, + 0.5898138798453831, + 445 + ], + [ + 7.0, + 4091, + 1049, + 0.551295264614992, + 546 + ], + [ + 8.0, + 4096, + 2455, + 0.5118387285181195, + 612 + ], + [ + 9.0, + 4096, + 3683, + 0.4273117420998519, + 632 + ], + [ + 10.0, + 4096, + 4059, + 0.382997056503597, + 637 + ], + [ + 11.0, + 4096, + 4092, + 0.3928025118356572, + 637 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 3 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263923 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.96142578125, + "solid_material_fidelity": 0.9601479046836483, + "structural_iou": 0.9579158316633266, + "defect_density": 0.03857421875, + "growth_time": 13.0, + "repair_attempts": 613, + "successful_repairs": 597, + "repair_overhead": 0.149658203125, + "attachment_events": 4096, + "transduction_defects": 71, + "feed_consumed": 1879.9199999999987, + "feed_supplied": 1199.0887923850125, + "waste_proxy": 36.77999999999998, + "fuel_turnover_kBT_proxy": 88040.0, + "min_concentration": 0.45814775332882374, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 49, + 0, + 0.8548553558760246, + 1 + ], + [ + 2.0, + 272, + 0, + 0.8357173970025518, + 10 + ], + [ + 3.0, + 840, + 0, + 0.7605788539999048, + 51 + ], + [ + 4.0, + 2063, + 2, + 0.6629964901902995, + 132 + ], + [ + 5.0, + 3437, + 59, + 0.6404847870784741, + 271 + ], + [ + 6.0, + 3992, + 311, + 0.5741174509447682, + 427 + ], + [ + 7.0, + 4086, + 925, + 0.5104702817973171, + 519 + ], + [ + 8.0, + 4095, + 2209, + 0.48847541630865504, + 568 + ], + [ + 9.0, + 4096, + 3518, + 0.48094883043540626, + 592 + ], + [ + 10.0, + 4096, + 4018, + 0.4387624155442817, + 597 + ], + [ + 11.0, + 4096, + 4089, + 0.44572623914979737, + 597 + ], + [ + 12.0, + 4096, + 4095, + 0.45239115327463375, + 597 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 4 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263924 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.963134765625, + "solid_material_fidelity": 0.9638455217748562, + "structural_iou": 0.9563476171405687, + "defect_density": 0.036865234375, + "growth_time": 12.4, + "repair_attempts": 643, + "successful_repairs": 633, + "repair_overhead": 0.156982421875, + "attachment_events": 4096, + "transduction_defects": 54, + "feed_consumed": 1881.7199999999991, + "feed_supplied": 1198.609960566908, + "waste_proxy": 38.58, + "fuel_turnover_kBT_proxy": 88340.0, + "min_concentration": 0.46949423761239084, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 70, + 0, + 0.8996977203472704, + 4 + ], + [ + 2.0, + 368, + 0, + 0.8344378501292942, + 17 + ], + [ + 3.0, + 1119, + 0, + 0.7720722247990668, + 75 + ], + [ + 4.0, + 2522, + 3, + 0.7059863022510368, + 187 + ], + [ + 5.0, + 3697, + 95, + 0.6165779565012935, + 346 + ], + [ + 6.0, + 4054, + 409, + 0.5532554067154982, + 477 + ], + [ + 7.0, + 4091, + 1254, + 0.4920295525261005, + 566 + ], + [ + 8.0, + 4095, + 2680, + 0.4985059310564544, + 611 + ], + [ + 9.0, + 4096, + 3753, + 0.44749348750362783, + 627 + ], + [ + 10.0, + 4096, + 4061, + 0.454473891549156, + 633 + ], + [ + 11.0, + 4096, + 4094, + 0.4611756977779781, + 633 + ], + [ + 12.0, + 4096, + 4095, + 0.467612762546222, + 633 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 5 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263925 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.9677734375, + "solid_material_fidelity": 0.9708299096138044, + "structural_iou": 0.96312625250501, + "defect_density": 0.0322265625, + "growth_time": 11.4, + "repair_attempts": 632, + "successful_repairs": 621, + "repair_overhead": 0.154296875, + "attachment_events": 4096, + "transduction_defects": 45, + "feed_consumed": 1881.0600000000006, + "feed_supplied": 1193.1231094663565, + "waste_proxy": 37.91999999999999, + "fuel_turnover_kBT_proxy": 88230.0, + "min_concentration": 0.45823902114643583, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9234923568068939, + 1 + ], + [ + 2.0, + 265, + 0, + 0.8279781874607082, + 12 + ], + [ + 3.0, + 952, + 0, + 0.7741051476725564, + 60 + ], + [ + 4.0, + 2185, + 5, + 0.7194927908705565, + 145 + ], + [ + 5.0, + 3453, + 43, + 0.6373515987095864, + 273 + ], + [ + 6.0, + 4019, + 310, + 0.570340930575805, + 419 + ], + [ + 7.0, + 4092, + 1048, + 0.5416224441451912, + 534 + ], + [ + 8.0, + 4096, + 2333, + 0.4928636567558643, + 600 + ], + [ + 9.0, + 4096, + 3553, + 0.4896393492084988, + 621 + ], + [ + 10.0, + 4096, + 4039, + 0.44814984712302575, + 621 + ], + [ + 11.0, + 4096, + 4092, + 0.4559610155459006, + 621 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 6 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263926 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.9599609375, + "solid_material_fidelity": 0.9609695973705834, + "structural_iou": 0.9532560926887734, + "defect_density": 0.0400390625, + "growth_time": 11.200000000000001, + "repair_attempts": 624, + "successful_repairs": 612, + "repair_overhead": 0.15234375, + "attachment_events": 4096, + "transduction_defects": 69, + "feed_consumed": 1880.5799999999997, + "feed_supplied": 1197.3801034135379, + "waste_proxy": 37.44000000000002, + "fuel_turnover_kBT_proxy": 88150.0, + "min_concentration": 0.45243185631646976, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 9.094947017729282e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 69, + 0, + 0.878512594216405, + 2 + ], + [ + 2.0, + 343, + 0, + 0.7977885296509482, + 19 + ], + [ + 3.0, + 1190, + 0, + 0.7626960209389629, + 63 + ], + [ + 4.0, + 2588, + 4, + 0.7051243814399949, + 169 + ], + [ + 5.0, + 3729, + 79, + 0.6429782366515453, + 316 + ], + [ + 6.0, + 4060, + 398, + 0.5844242120102293, + 452 + ], + [ + 7.0, + 4094, + 1308, + 0.5247585024943437, + 536 + ], + [ + 8.0, + 4096, + 2745, + 0.4890797351062031, + 592 + ], + [ + 9.0, + 4096, + 3795, + 0.47298456748442363, + 608 + ], + [ + 10.0, + 4096, + 4068, + 0.4440850388423198, + 612 + ], + [ + 11.0, + 4096, + 4095, + 0.451690061323104, + 612 + ] + ], + "case": "reference", + "dim": 3, + "replicate": 7 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263919 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.822021484375, + "solid_material_fidelity": 0.8221035332785538, + "structural_iou": 0.8142857142857143, + "defect_density": 0.177978515625, + "growth_time": 11.200000000000001, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 63, + "feed_consumed": 1843.1399999999994, + "feed_supplied": 1169.4225149171016, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.4559953346066775, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 48, + 0, + 0.9114392495036368, + 0 + ], + [ + 2.0, + 362, + 0, + 0.8424684354249529, + 0 + ], + [ + 3.0, + 1152, + 0, + 0.7749420211824787, + 0 + ], + [ + 4.0, + 2575, + 4, + 0.7062927777609908, + 0 + ], + [ + 5.0, + 3700, + 62, + 0.6413603123195912, + 0 + ], + [ + 6.0, + 4054, + 431, + 0.5797802203889102, + 0 + ], + [ + 7.0, + 4094, + 1276, + 0.4975439265737426, + 0 + ], + [ + 8.0, + 4096, + 2723, + 0.4413876385186543, + 0 + ], + [ + 9.0, + 4096, + 3759, + 0.44998896099172025, + 0 + ], + [ + 10.0, + 4096, + 4063, + 0.4482644454135993, + 0 + ], + [ + 11.0, + 4096, + 4095, + 0.4553073833109798, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 0 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263920 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.822998046875, + "solid_material_fidelity": 0.8262119967132292, + "structural_iou": 0.8081140350877193, + "defect_density": 0.177001953125, + "growth_time": 12.3, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 56, + "feed_consumed": 1843.1399999999996, + "feed_supplied": 1170.1311154355662, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.45683456348424883, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9250921535195618, + 0 + ], + [ + 2.0, + 239, + 0, + 0.8696268976775678, + 0 + ], + [ + 3.0, + 863, + 0, + 0.7996708756501498, + 0 + ], + [ + 4.0, + 2107, + 2, + 0.7307005708599067, + 0 + ], + [ + 5.0, + 3489, + 45, + 0.66787761681327, + 0 + ], + [ + 6.0, + 4020, + 271, + 0.5884683112613631, + 0 + ], + [ + 7.0, + 4091, + 943, + 0.5591876723416677, + 0 + ], + [ + 8.0, + 4095, + 2239, + 0.4787968150239418, + 0 + ], + [ + 9.0, + 4096, + 3570, + 0.43161234170463053, + 0 + ], + [ + 10.0, + 4096, + 4038, + 0.4398437492429916, + 0 + ], + [ + 11.0, + 4096, + 4092, + 0.4477512841588477, + 0 + ], + [ + 12.0, + 4096, + 4095, + 0.455350433699509, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 1 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263921 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.817138671875, + "solid_material_fidelity": 0.8245686113393591, + "structural_iou": 0.8040638606676342, + "defect_density": 0.182861328125, + "growth_time": 11.3, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 64, + "feed_consumed": 1843.1400000000003, + "feed_supplied": 1167.4128851385528, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.45633350890699925, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 40, + 0, + 0.9253127732402283, + 0 + ], + [ + 2.0, + 261, + 0, + 0.8741018419865787, + 0 + ], + [ + 3.0, + 902, + 0, + 0.8079670296369411, + 0 + ], + [ + 4.0, + 2206, + 2, + 0.7399442340644009, + 0 + ], + [ + 5.0, + 3541, + 49, + 0.6757006872743212, + 0 + ], + [ + 6.0, + 4049, + 296, + 0.602962130729327, + 0 + ], + [ + 7.0, + 4095, + 1002, + 0.5352220968020375, + 0 + ], + [ + 8.0, + 4096, + 2360, + 0.48165704988312363, + 0 + ], + [ + 9.0, + 4096, + 3637, + 0.4717902796980945, + 0 + ], + [ + 10.0, + 4096, + 4066, + 0.4467724075687384, + 0 + ], + [ + 11.0, + 4096, + 4095, + 0.45477576928006663, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 2 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263922 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.818359375, + "solid_material_fidelity": 0.8258011503697618, + "structural_iou": 0.8057371096586783, + "defect_density": 0.181640625, + "growth_time": 11.3, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 58, + "feed_consumed": 1843.1399999999996, + "feed_supplied": 1168.176215911719, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.4454321995126496, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 42, + 0, + 0.9120687138886074, + 0 + ], + [ + 2.0, + 284, + 0, + 0.855406838263532, + 0 + ], + [ + 3.0, + 950, + 0, + 0.7874559793473984, + 0 + ], + [ + 4.0, + 2298, + 2, + 0.7195662035810492, + 0 + ], + [ + 5.0, + 3616, + 54, + 0.6584142412112282, + 0 + ], + [ + 6.0, + 4040, + 324, + 0.5926301174371339, + 0 + ], + [ + 7.0, + 4094, + 1049, + 0.5603064228822513, + 0 + ], + [ + 8.0, + 4096, + 2455, + 0.5167883466771237, + 0 + ], + [ + 9.0, + 4096, + 3708, + 0.4618551732759289, + 0 + ], + [ + 10.0, + 4096, + 4054, + 0.450203712146917, + 0 + ], + [ + 11.0, + 4096, + 4094, + 0.4516535849474792, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 3 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263923 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.82666015625, + "solid_material_fidelity": 0.819227608874281, + "structural_iou": 0.8180473372781065, + "defect_density": 0.17333984375, + "growth_time": 11.600000000000001, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 67, + "feed_consumed": 1843.1399999999985, + "feed_supplied": 1171.1177444662617, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.45338397962690075, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.2737367544323206e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 49, + 0, + 0.908587367080717, + 0 + ], + [ + 2.0, + 272, + 0, + 0.8464200180859572, + 0 + ], + [ + 3.0, + 840, + 0, + 0.7841006661910146, + 0 + ], + [ + 4.0, + 2063, + 2, + 0.7182848802094831, + 0 + ], + [ + 5.0, + 3416, + 59, + 0.6574697255140949, + 0 + ], + [ + 6.0, + 4009, + 311, + 0.5898050567462945, + 0 + ], + [ + 7.0, + 4090, + 925, + 0.5160622577823336, + 0 + ], + [ + 8.0, + 4096, + 2210, + 0.4940526870775538, + 0 + ], + [ + 9.0, + 4096, + 3510, + 0.4908778427485614, + 0 + ], + [ + 10.0, + 4096, + 4034, + 0.4780644697618467, + 0 + ], + [ + 11.0, + 4096, + 4092, + 0.4842607208390921, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 4 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263924 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.82080078125, + "solid_material_fidelity": 0.8171733771569433, + "structural_iou": 0.8071979434447301, + "defect_density": 0.17919921875, + "growth_time": 12.4, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 54, + "feed_consumed": 1843.1400000000003, + "feed_supplied": 1173.318562307342, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.47791077858484804, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 70, + 0, + 0.8997364413600201, + 0 + ], + [ + 2.0, + 368, + 0, + 0.8403531652312454, + 0 + ], + [ + 3.0, + 1119, + 0, + 0.7737453395860527, + 0 + ], + [ + 4.0, + 2522, + 3, + 0.7075328749964382, + 0 + ], + [ + 5.0, + 3697, + 95, + 0.6493395906368294, + 0 + ], + [ + 6.0, + 4054, + 409, + 0.5865490381916975, + 0 + ], + [ + 7.0, + 4091, + 1254, + 0.49687437993725325, + 0 + ], + [ + 8.0, + 4095, + 2680, + 0.5033939140777643, + 0 + ], + [ + 9.0, + 4096, + 3753, + 0.45605371929785576, + 0 + ], + [ + 10.0, + 4096, + 4061, + 0.46298998715903067, + 0 + ], + [ + 11.0, + 4096, + 4094, + 0.4696481752393914, + 0 + ], + [ + 12.0, + 4096, + 4095, + 0.47604213543973833, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 5 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263925 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.81787109375, + "solid_material_fidelity": 0.8266228430566968, + "structural_iou": 0.8016678752719362, + "defect_density": 0.18212890625, + "growth_time": 12.5, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 62, + "feed_consumed": 1843.1399999999985, + "feed_supplied": 1171.621340922009, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.46656505394785025, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 3.183231456205249e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9234975018068938, + 0 + ], + [ + 2.0, + 265, + 0, + 0.8667979688207302, + 0 + ], + [ + 3.0, + 953, + 0, + 0.7963442773812062, + 0 + ], + [ + 4.0, + 2189, + 5, + 0.7255203183822182, + 0 + ], + [ + 5.0, + 3459, + 43, + 0.6631614421456145, + 0 + ], + [ + 6.0, + 4013, + 310, + 0.5946791672966479, + 0 + ], + [ + 7.0, + 4090, + 1061, + 0.5523971300629907, + 0 + ], + [ + 8.0, + 4094, + 2335, + 0.5051570175716154, + 0 + ], + [ + 9.0, + 4096, + 3548, + 0.4397938317039612, + 0 + ], + [ + 10.0, + 4096, + 4026, + 0.4480938102450882, + 0 + ], + [ + 11.0, + 4096, + 4091, + 0.4560295304589137, + 0 + ], + [ + 12.0, + 4096, + 4094, + 0.463620787575814, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 6 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.0, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263926 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.82421875, + "solid_material_fidelity": 0.8204601479046837, + "structural_iou": 0.8167096061832904, + "defect_density": 0.17578125, + "growth_time": 11.200000000000001, + "repair_attempts": 0, + "successful_repairs": 0, + "repair_overhead": 0.0, + "attachment_events": 4096, + "transduction_defects": 69, + "feed_consumed": 1843.1400000000006, + "feed_supplied": 1172.302571218369, + "waste_proxy": 0.0, + "fuel_turnover_kBT_proxy": 81910.0, + "min_concentration": 0.4727309237498639, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 9.094947017729282e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 69, + 0, + 0.9032216652196838, + 0 + ], + [ + 2.0, + 343, + 0, + 0.8427112316713387, + 0 + ], + [ + 3.0, + 1190, + 0, + 0.7759174368035601, + 0 + ], + [ + 4.0, + 2588, + 4, + 0.7111300995414142, + 0 + ], + [ + 5.0, + 3729, + 79, + 0.6477186476926292, + 0 + ], + [ + 6.0, + 4060, + 398, + 0.5885375035195353, + 0 + ], + [ + 7.0, + 4094, + 1308, + 0.5378099189242072, + 0 + ], + [ + 8.0, + 4096, + 2745, + 0.49687031504655066, + 0 + ], + [ + 9.0, + 4096, + 3795, + 0.4943245793286084, + 0 + ], + [ + 10.0, + 4096, + 4068, + 0.46481597336539965, + 0 + ], + [ + 11.0, + 4096, + 4095, + 0.4720277482677471, + 0 + ] + ], + "case": "no_repair", + "dim": 3, + "replicate": 7 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263919 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.885009765625, + "solid_material_fidelity": 0.8886606409202958, + "structural_iou": 0.8735763097949886, + "defect_density": 0.114990234375, + "growth_time": 7.7, + "repair_attempts": 67, + "successful_repairs": 65, + "repair_overhead": 0.016357421875, + "attachment_events": 4096, + "transduction_defects": 61, + "feed_consumed": 290.6799999999999, + "feed_supplied": 129.5688353961838, + "waste_proxy": 4.02, + "fuel_turnover_kBT_proxy": 82580.0, + "min_concentration": 0.8399790157237373, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 4.547473508864641e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 51, + 43, + 0.9240467091236785, + 1 + ], + [ + 2.0, + 303, + 257, + 0.8793508281400528, + 8 + ], + [ + 3.0, + 1034, + 931, + 0.867045585664375, + 14 + ], + [ + 4.0, + 2425, + 2264, + 0.8580129542416252, + 36 + ], + [ + 5.0, + 3639, + 3557, + 0.82837968106836, + 59 + ], + [ + 6.0, + 4044, + 4030, + 0.8329956104775679, + 65 + ], + [ + 7.0, + 4092, + 4092, + 0.8374163989583586, + 65 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 0 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263920 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.87646484375, + "solid_material_fidelity": 0.8788003286770748, + "structural_iou": 0.8665406427221172, + "defect_density": 0.12353515625, + "growth_time": 8.4, + "repair_attempts": 68, + "successful_repairs": 67, + "repair_overhead": 0.0166015625, + "attachment_events": 4096, + "transduction_defects": 69, + "feed_consumed": 290.74000000000007, + "feed_supplied": 129.034531947684, + "waste_proxy": 4.08, + "fuel_turnover_kBT_proxy": 82590.0, + "min_concentration": 0.8595219749684854, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 28, + 0.9253696850129431, + 0 + ], + [ + 2.0, + 225, + 193, + 0.8668664193704041, + 6 + ], + [ + 3.0, + 833, + 748, + 0.8663633966633997, + 14 + ], + [ + 4.0, + 2151, + 1987, + 0.8600648141368759, + 34 + ], + [ + 5.0, + 3390, + 3291, + 0.8582681583251893, + 56 + ], + [ + 6.0, + 3973, + 3939, + 0.8521831895307319, + 65 + ], + [ + 7.0, + 4088, + 4086, + 0.8554741965343406, + 67 + ], + [ + 8.0, + 4094, + 4094, + 0.8586101856752301, + 67 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 1 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263921 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.884521484375, + "solid_material_fidelity": 0.8882497945768283, + "structural_iou": 0.8743833017077799, + "defect_density": 0.115478515625, + "growth_time": 8.0, + "repair_attempts": 75, + "successful_repairs": 72, + "repair_overhead": 0.018310546875, + "attachment_events": 4096, + "transduction_defects": 66, + "feed_consumed": 291.16000000000014, + "feed_supplied": 129.4259755889281, + "waste_proxy": 4.5, + "fuel_turnover_kBT_proxy": 82660.0, + "min_concentration": 0.8565089713055596, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": -4.547473508864641e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 34, + 28, + 0.9271218096473297, + 2 + ], + [ + 2.0, + 187, + 160, + 0.9168495565381638, + 3 + ], + [ + 3.0, + 707, + 636, + 0.8799038296205137, + 11 + ], + [ + 4.0, + 1862, + 1720, + 0.8565232192873108, + 31 + ], + [ + 5.0, + 3246, + 3134, + 0.8525689909603844, + 55 + ], + [ + 6.0, + 3963, + 3927, + 0.8554610413339697, + 68 + ], + [ + 7.0, + 4087, + 4083, + 0.8536186877819213, + 72 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 2 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263922 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.891845703125, + "solid_material_fidelity": 0.8997534921939194, + "structural_iou": 0.8784656285605773, + "defect_density": 0.108154296875, + "growth_time": 7.300000000000001, + "repair_attempts": 76, + "successful_repairs": 76, + "repair_overhead": 0.0185546875, + "attachment_events": 4096, + "transduction_defects": 57, + "feed_consumed": 291.22000000000025, + "feed_supplied": 128.96597762336035, + "waste_proxy": 4.5600000000000005, + "fuel_turnover_kBT_proxy": 82670.0, + "min_concentration": 0.8572846768333424, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 46, + 32, + 0.8923532250064389, + 1 + ], + [ + 2.0, + 318, + 274, + 0.8672976967846433, + 7 + ], + [ + 3.0, + 1055, + 943, + 0.8623927644124688, + 25 + ], + [ + 4.0, + 2297, + 2167, + 0.8557407657705483, + 51 + ], + [ + 5.0, + 3580, + 3485, + 0.8590820801341755, + 72 + ], + [ + 6.0, + 4044, + 4030, + 0.8534088779402617, + 76 + ], + [ + 7.0, + 4095, + 4093, + 0.8566545059692023, + 76 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 3 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263923 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.871826171875, + "solid_material_fidelity": 0.8685291700903862, + "structural_iou": 0.8582796513830997, + "defect_density": 0.128173828125, + "growth_time": 7.6000000000000005, + "repair_attempts": 80, + "successful_repairs": 77, + "repair_overhead": 0.01953125, + "attachment_events": 4096, + "transduction_defects": 74, + "feed_consumed": 291.46000000000004, + "feed_supplied": 129.16856411455586, + "waste_proxy": 4.8, + "fuel_turnover_kBT_proxy": 82710.0, + "min_concentration": 0.8627429151550723, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 48, + 39, + 0.9241151261663101, + 0 + ], + [ + 2.0, + 300, + 262, + 0.8654768862404767, + 5 + ], + [ + 3.0, + 1023, + 914, + 0.857359184024854, + 24 + ], + [ + 4.0, + 2440, + 2260, + 0.8529237518115262, + 47 + ], + [ + 5.0, + 3642, + 3533, + 0.8558820884116047, + 70 + ], + [ + 6.0, + 4045, + 4028, + 0.8587149442429124, + 76 + ], + [ + 7.0, + 4093, + 4091, + 0.8614287473275521, + 77 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 4 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263924 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.885498046875, + "solid_material_fidelity": 0.8837304847986853, + "structural_iou": 0.8770992366412214, + "defect_density": 0.114501953125, + "growth_time": 7.800000000000001, + "repair_attempts": 80, + "successful_repairs": 78, + "repair_overhead": 0.01953125, + "attachment_events": 4096, + "transduction_defects": 73, + "feed_consumed": 291.4600000000001, + "feed_supplied": 129.58079095187946, + "waste_proxy": 4.799999999999998, + "fuel_turnover_kBT_proxy": 82710.0, + "min_concentration": 0.8650511644605546, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 9.094947017729282e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 70, + 60, + 0.9159943633287362, + 2 + ], + [ + 2.0, + 387, + 335, + 0.8762243114040064, + 10 + ], + [ + 3.0, + 1256, + 1128, + 0.8561273879481235, + 25 + ], + [ + 4.0, + 2852, + 2690, + 0.8533874250724631, + 59 + ], + [ + 5.0, + 3889, + 3831, + 0.855986795585062, + 74 + ], + [ + 6.0, + 4081, + 4074, + 0.8594948130445575, + 78 + ], + [ + 7.0, + 4095, + 4094, + 0.8628575146626131, + 78 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 5 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263925 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.880615234375, + "solid_material_fidelity": 0.8816762530813476, + "structural_iou": 0.8683111954459203, + "defect_density": 0.119384765625, + "growth_time": 8.3, + "repair_attempts": 66, + "successful_repairs": 63, + "repair_overhead": 0.01611328125, + "attachment_events": 4096, + "transduction_defects": 65, + "feed_consumed": 290.62, + "feed_supplied": 129.4467219368281, + "waste_proxy": 3.9600000000000017, + "fuel_turnover_kBT_proxy": 82570.0, + "min_concentration": 0.8680291464538152, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 28, + 0.9299999999999999, + 1 + ], + [ + 2.0, + 280, + 235, + 0.8599590201598868, + 5 + ], + [ + 3.0, + 957, + 874, + 0.862255854833051, + 17 + ], + [ + 4.0, + 2265, + 2112, + 0.8521828360494048, + 34 + ], + [ + 5.0, + 3577, + 3498, + 0.8584602343665508, + 54 + ], + [ + 6.0, + 4028, + 4020, + 0.8619351571827031, + 61 + ], + [ + 7.0, + 4091, + 4088, + 0.865174454754749, + 63 + ], + [ + 8.0, + 4095, + 4095, + 0.8675631731811706, + 63 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 6 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 0.2, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263926 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.887451171875, + "solid_material_fidelity": 0.885784716516023, + "structural_iou": 0.8742835307604127, + "defect_density": 0.112548828125, + "growth_time": 9.200000000000001, + "repair_attempts": 83, + "successful_repairs": 79, + "repair_overhead": 0.020263671875, + "attachment_events": 4096, + "transduction_defects": 57, + "feed_consumed": 291.64000000000016, + "feed_supplied": 130.7941187477051, + "waste_proxy": 4.979999999999998, + "fuel_turnover_kBT_proxy": 82740.0, + "min_concentration": 0.8667845362683682, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 68, + 55, + 0.8875015050304099, + 1 + ], + [ + 2.0, + 385, + 333, + 0.8699999999999999, + 3 + ], + [ + 3.0, + 1169, + 1062, + 0.864848874096249, + 15 + ], + [ + 4.0, + 2516, + 2358, + 0.8609749871969695, + 46 + ], + [ + 5.0, + 3717, + 3630, + 0.8513044467687887, + 73 + ], + [ + 6.0, + 4054, + 4041, + 0.8553421191936861, + 79 + ], + [ + 7.0, + 4092, + 4091, + 0.8592045455304458, + 79 + ], + [ + 8.0, + 4095, + 4094, + 0.8629007004382802, + 79 + ], + [ + 9.0, + 4096, + 4095, + 0.8664390656457119, + 79 + ] + ], + "case": "early_lock", + "dim": 3, + "replicate": 7 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263919 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.95849609375, + "solid_material_fidelity": 0.961380443714051, + "structural_iou": 0.949003984063745, + "defect_density": 0.04150390625, + "growth_time": 12.100000000000001, + "repair_attempts": 660, + "successful_repairs": 645, + "repair_overhead": 0.1611328125, + "attachment_events": 4096, + "transduction_defects": 58, + "feed_consumed": 1882.740000000001, + "feed_supplied": 894.9383047225338, + "waste_proxy": 39.6, + "fuel_turnover_kBT_proxy": 88510.0, + "min_concentration": 0.24557494559564494, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 9.094947017729282e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 48, + 0, + 0.9114392425616544, + 1 + ], + [ + 2.0, + 362, + 0, + 0.8424258275845942, + 11 + ], + [ + 3.0, + 1192, + 0, + 0.7533548047837182, + 66 + ], + [ + 4.0, + 2671, + 4, + 0.6856885096581333, + 189 + ], + [ + 5.0, + 3774, + 62, + 0.580973768149937, + 363 + ], + [ + 6.0, + 4064, + 430, + 0.515653156023632, + 496 + ], + [ + 7.0, + 4095, + 1306, + 0.4469608867815255, + 577 + ], + [ + 8.0, + 4095, + 2807, + 0.3976070196133846, + 630 + ], + [ + 9.0, + 4096, + 3822, + 0.40328252044322643, + 644 + ], + [ + 10.0, + 4096, + 4076, + 0.38569637410634133, + 644 + ], + [ + 11.0, + 4096, + 4095, + 0.3117342267686689, + 645 + ], + [ + 12.0, + 4096, + 4096, + 0.24557494559564494, + 645 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 0 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263920 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.960693359375, + "solid_material_fidelity": 0.9622021364009861, + "structural_iou": 0.954854174990012, + "defect_density": 0.039306640625, + "growth_time": 11.4, + "repair_attempts": 656, + "successful_repairs": 640, + "repair_overhead": 0.16015625, + "attachment_events": 4096, + "transduction_defects": 51, + "feed_consumed": 1882.4999999999998, + "feed_supplied": 890.095166859365, + "waste_proxy": 39.35999999999998, + "fuel_turnover_kBT_proxy": 88470.0, + "min_concentration": 0.28452803173998753, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9250921535195618, + 0 + ], + [ + 2.0, + 239, + 0, + 0.8440773632167614, + 11 + ], + [ + 3.0, + 892, + 0, + 0.7725011259630206, + 54 + ], + [ + 4.0, + 2098, + 2, + 0.7132856237580748, + 137 + ], + [ + 5.0, + 3474, + 45, + 0.6180030932344682, + 291 + ], + [ + 6.0, + 4042, + 271, + 0.552138037360678, + 442 + ], + [ + 7.0, + 4095, + 984, + 0.47722494961990364, + 556 + ], + [ + 8.0, + 4096, + 2252, + 0.41985384662179515, + 614 + ], + [ + 9.0, + 4096, + 3578, + 0.33359605754027627, + 639 + ], + [ + 10.0, + 4096, + 4055, + 0.3247389799241421, + 640 + ], + [ + 11.0, + 4096, + 4095, + 0.2813806881190715, + 640 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 1 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263921 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.9609375, + "solid_material_fidelity": 0.9576828266228431, + "structural_iou": 0.9578482537133681, + "defect_density": 0.0390625, + "growth_time": 11.4, + "repair_attempts": 671, + "successful_repairs": 656, + "repair_overhead": 0.163818359375, + "attachment_events": 4096, + "transduction_defects": 54, + "feed_consumed": 1883.4, + "feed_supplied": 886.6615885982529, + "waste_proxy": 40.25999999999998, + "fuel_turnover_kBT_proxy": 88620.0, + "min_concentration": 0.21499910314760087, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 40, + 0, + 0.9253127732400708, + 1 + ], + [ + 2.0, + 261, + 0, + 0.8385756096104777, + 12 + ], + [ + 3.0, + 895, + 0, + 0.7763297702371228, + 46 + ], + [ + 4.0, + 2138, + 2, + 0.699750432185734, + 132 + ], + [ + 5.0, + 3498, + 49, + 0.6335239305895222, + 320 + ], + [ + 6.0, + 4029, + 296, + 0.537297158265539, + 467 + ], + [ + 7.0, + 4092, + 987, + 0.46957830688388685, + 560 + ], + [ + 8.0, + 4096, + 2280, + 0.37946152130694166, + 631 + ], + [ + 9.0, + 4096, + 3594, + 0.3508106385836048, + 650 + ], + [ + 10.0, + 4096, + 4045, + 0.27009544658308043, + 656 + ], + [ + 11.0, + 4096, + 4092, + 0.2112984707575868, + 656 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 2 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263922 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.960693359375, + "solid_material_fidelity": 0.9654889071487264, + "structural_iou": 0.9530067702110713, + "defect_density": 0.039306640625, + "growth_time": 11.9, + "repair_attempts": 645, + "successful_repairs": 633, + "repair_overhead": 0.157470703125, + "attachment_events": 4096, + "transduction_defects": 58, + "feed_consumed": 1881.8400000000001, + "feed_supplied": 890.5660696693164, + "waste_proxy": 38.69999999999998, + "fuel_turnover_kBT_proxy": 88360.0, + "min_concentration": 0.335642934899465, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 2.2737367544323206e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 42, + 0, + 0.8964704510511073, + 2 + ], + [ + 2.0, + 284, + 0, + 0.8527697102435394, + 11 + ], + [ + 3.0, + 941, + 0, + 0.7594035309055535, + 53 + ], + [ + 4.0, + 2260, + 2, + 0.7012972966304292, + 151 + ], + [ + 5.0, + 3545, + 54, + 0.6091332695150667, + 314 + ], + [ + 6.0, + 4030, + 324, + 0.5352385494398998, + 446 + ], + [ + 7.0, + 4092, + 1056, + 0.46432582971109276, + 532 + ], + [ + 8.0, + 4096, + 2402, + 0.4014542441681529, + 603 + ], + [ + 9.0, + 4096, + 3629, + 0.3729640778016787, + 630 + ], + [ + 10.0, + 4096, + 4043, + 0.31872870311197543, + 633 + ], + [ + 11.0, + 4096, + 4094, + 0.32830298656292084, + 633 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 3 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263923 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.962890625, + "solid_material_fidelity": 0.9593262119967132, + "structural_iou": 0.9593888218737434, + "defect_density": 0.037109375, + "growth_time": 11.5, + "repair_attempts": 606, + "successful_repairs": 591, + "repair_overhead": 0.14794921875, + "attachment_events": 4096, + "transduction_defects": 59, + "feed_consumed": 1879.5, + "feed_supplied": 894.2061639705753, + "waste_proxy": 36.35999999999999, + "fuel_turnover_kBT_proxy": 87970.0, + "min_concentration": 0.37494992854311404, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 1.3642420526593924e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 49, + 0, + 0.8548553558760246, + 1 + ], + [ + 2.0, + 272, + 0, + 0.8343135489159512, + 10 + ], + [ + 3.0, + 840, + 0, + 0.760286502111629, + 48 + ], + [ + 4.0, + 2035, + 2, + 0.6911470068709749, + 139 + ], + [ + 5.0, + 3479, + 59, + 0.621302318246638, + 283 + ], + [ + 6.0, + 4033, + 311, + 0.5136037704439204, + 427 + ], + [ + 7.0, + 4088, + 925, + 0.4489342112060333, + 512 + ], + [ + 8.0, + 4096, + 2192, + 0.41608150034757074, + 566 + ], + [ + 9.0, + 4096, + 3560, + 0.3625714566759192, + 585 + ], + [ + 10.0, + 4096, + 4045, + 0.3631892090529627, + 590 + ], + [ + 11.0, + 4096, + 4091, + 0.37167398400280266, + 591 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 4 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263924 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.95751953125, + "solid_material_fidelity": 0.9634346754313886, + "structural_iou": 0.9487892020643113, + "defect_density": 0.04248046875, + "growth_time": 11.600000000000001, + "repair_attempts": 653, + "successful_repairs": 636, + "repair_overhead": 0.159423828125, + "attachment_events": 4096, + "transduction_defects": 69, + "feed_consumed": 1882.3199999999986, + "feed_supplied": 891.1875187747377, + "waste_proxy": 39.17999999999999, + "fuel_turnover_kBT_proxy": 88440.0, + "min_concentration": 0.35434279973469435, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 70, + 0, + 0.8996977202137728, + 4 + ], + [ + 2.0, + 375, + 0, + 0.8394386210055301, + 23 + ], + [ + 3.0, + 1114, + 0, + 0.7739725796162186, + 60 + ], + [ + 4.0, + 2500, + 3, + 0.6949651610286102, + 186 + ], + [ + 5.0, + 3687, + 95, + 0.6099177802849244, + 341 + ], + [ + 6.0, + 4064, + 423, + 0.5293217076029881, + 463 + ], + [ + 7.0, + 4095, + 1221, + 0.4850494309485309, + 576 + ], + [ + 8.0, + 4096, + 2660, + 0.44072912487276356, + 615 + ], + [ + 9.0, + 4096, + 3752, + 0.37059848920826305, + 632 + ], + [ + 10.0, + 4096, + 4079, + 0.3424229789875555, + 636 + ], + [ + 11.0, + 4096, + 4095, + 0.3504645013539949, + 636 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 5 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263925 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.9599609375, + "solid_material_fidelity": 0.9630238290879212, + "structural_iou": 0.9537480063795853, + "defect_density": 0.0400390625, + "growth_time": 11.700000000000001, + "repair_attempts": 598, + "successful_repairs": 588, + "repair_overhead": 0.14599609375, + "attachment_events": 4096, + "transduction_defects": 63, + "feed_consumed": 1879.019999999999, + "feed_supplied": 886.687962564394, + "waste_proxy": 35.879999999999995, + "fuel_turnover_kBT_proxy": 87890.0, + "min_concentration": 0.35342412089550457, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 2.2737367544323206e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9234923568068939, + 1 + ], + [ + 2.0, + 265, + 0, + 0.8279781724397709, + 12 + ], + [ + 3.0, + 937, + 0, + 0.7480951132347062, + 51 + ], + [ + 4.0, + 2219, + 5, + 0.7021422965085985, + 124 + ], + [ + 5.0, + 3467, + 43, + 0.630431464257519, + 251 + ], + [ + 6.0, + 4001, + 310, + 0.5477123517570964, + 409 + ], + [ + 7.0, + 4093, + 1039, + 0.45852289357865245, + 502 + ], + [ + 8.0, + 4096, + 2374, + 0.4282232037231049, + 557 + ], + [ + 9.0, + 4096, + 3552, + 0.4048526777014406, + 584 + ], + [ + 10.0, + 4096, + 4024, + 0.37014987305405633, + 588 + ], + [ + 11.0, + 4096, + 4093, + 0.34789336583350944, + 588 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 6 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 0, + "hard_permeability": 0.02, + "seed": 20263926 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.958251953125, + "solid_material_fidelity": 0.9609695973705834, + "structural_iou": 0.951394422310757, + "defect_density": 0.041748046875, + "growth_time": 11.600000000000001, + "repair_attempts": 639, + "successful_repairs": 619, + "repair_overhead": 0.156005859375, + "attachment_events": 4096, + "transduction_defects": 66, + "feed_consumed": 1881.48, + "feed_supplied": 893.5038031445628, + "waste_proxy": 38.34000000000001, + "fuel_turnover_kBT_proxy": 88300.0, + "min_concentration": 0.31846433392255646, + "reservoir_site_fraction": 0.330078125, + "mass_balance_residual": 1.3642420526593924e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 69, + 0, + 0.878512594216405, + 2 + ], + [ + 2.0, + 343, + 0, + 0.7977624747393365, + 19 + ], + [ + 3.0, + 1190, + 0, + 0.7619345975823857, + 63 + ], + [ + 4.0, + 2549, + 4, + 0.6897479675361358, + 166 + ], + [ + 5.0, + 3719, + 79, + 0.6140140401787032, + 311 + ], + [ + 6.0, + 4068, + 398, + 0.5356887649906127, + 455 + ], + [ + 7.0, + 4093, + 1308, + 0.4490366899820187, + 546 + ], + [ + 8.0, + 4096, + 2708, + 0.4377081760378948, + 598 + ], + [ + 9.0, + 4096, + 3786, + 0.36820135263262244, + 614 + ], + [ + 10.0, + 4096, + 4075, + 0.3452259423347713, + 619 + ], + [ + 11.0, + 4096, + 4094, + 0.3127836060284036, + 619 + ] + ], + "case": "no_internal_supply", + "dim": 3, + "replicate": 7 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263919 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.885009765625, + "solid_material_fidelity": 0.8898931799506984, + "structural_iou": 0.8718240424725067, + "defect_density": 0.114990234375, + "growth_time": 12.600000000000001, + "repair_attempts": 620, + "successful_repairs": 609, + "repair_overhead": 0.1513671875, + "attachment_events": 4096, + "transduction_defects": 61, + "feed_consumed": 1880.3399999999986, + "feed_supplied": 1198.9105576532518, + "waste_proxy": 37.2, + "fuel_turnover_kBT_proxy": 88110.0, + "min_concentration": 0.45641595570296095, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 48, + 0, + 0.9114392495036368, + 1 + ], + [ + 2.0, + 362, + 0, + 0.842465946250141, + 11 + ], + [ + 3.0, + 1152, + 0, + 0.7669987524119442, + 65 + ], + [ + 4.0, + 2575, + 4, + 0.6710028807965637, + 176 + ], + [ + 5.0, + 3675, + 62, + 0.6354599779429363, + 326 + ], + [ + 6.0, + 4041, + 431, + 0.5706537057149957, + 465 + ], + [ + 7.0, + 4092, + 1276, + 0.48559110950439355, + 555 + ], + [ + 8.0, + 4094, + 2723, + 0.42945785617366045, + 594 + ], + [ + 9.0, + 4096, + 3747, + 0.43807491297439705, + 605 + ], + [ + 10.0, + 4096, + 4051, + 0.4352628234771693, + 609 + ], + [ + 11.0, + 4096, + 4092, + 0.44447645279138226, + 609 + ], + [ + 12.0, + 4096, + 4094, + 0.452518204723928, + 609 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 0 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263920 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.874267578125, + "solid_material_fidelity": 0.8738701725554643, + "structural_iou": 0.8626040878122634, + "defect_density": 0.125732421875, + "growth_time": 12.3, + "repair_attempts": 642, + "successful_repairs": 634, + "repair_overhead": 0.15673828125, + "attachment_events": 4096, + "transduction_defects": 56, + "feed_consumed": 1881.6599999999994, + "feed_supplied": 1195.405519592947, + "waste_proxy": 38.52000000000001, + "fuel_turnover_kBT_proxy": 88330.0, + "min_concentration": 0.45187523815856206, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9250921535195618, + 0 + ], + [ + 2.0, + 239, + 0, + 0.8440787334093868, + 11 + ], + [ + 3.0, + 863, + 0, + 0.7711650905269751, + 49 + ], + [ + 4.0, + 2107, + 2, + 0.716515577828219, + 138 + ], + [ + 5.0, + 3489, + 45, + 0.628007589153886, + 296 + ], + [ + 6.0, + 4020, + 271, + 0.5656781605356344, + 448 + ], + [ + 7.0, + 4091, + 943, + 0.5010281559897357, + 539 + ], + [ + 8.0, + 4095, + 2239, + 0.47375638001413917, + 610 + ], + [ + 9.0, + 4096, + 3570, + 0.426601581135846, + 634 + ], + [ + 10.0, + 4096, + 4038, + 0.434849773116881, + 634 + ], + [ + 11.0, + 4096, + 4092, + 0.442773432981965, + 634 + ], + [ + 12.0, + 4096, + 4095, + 0.4503880811470352, + 634 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 1 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263921 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.890869140625, + "solid_material_fidelity": 0.8952341824157765, + "structural_iou": 0.8789032749428789, + "defect_density": 0.109130859375, + "growth_time": 11.3, + "repair_attempts": 668, + "successful_repairs": 653, + "repair_overhead": 0.1630859375, + "attachment_events": 4096, + "transduction_defects": 65, + "feed_consumed": 1883.2199999999996, + "feed_supplied": 1194.123451797374, + "waste_proxy": 40.07999999999999, + "fuel_turnover_kBT_proxy": 88590.0, + "min_concentration": 0.45586731560350713, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 40, + 0, + 0.9253127732402283, + 1 + ], + [ + 2.0, + 261, + 0, + 0.84879156291723, + 12 + ], + [ + 3.0, + 902, + 0, + 0.7735376263266915, + 49 + ], + [ + 4.0, + 2206, + 2, + 0.706797431321339, + 155 + ], + [ + 5.0, + 3560, + 49, + 0.6691516843645648, + 315 + ], + [ + 6.0, + 4049, + 296, + 0.5979336879252033, + 476 + ], + [ + 7.0, + 4095, + 1002, + 0.5294930341861327, + 563 + ], + [ + 8.0, + 4096, + 2360, + 0.47364242661996425, + 623 + ], + [ + 9.0, + 4096, + 3626, + 0.45961467544834206, + 647 + ], + [ + 10.0, + 4096, + 4058, + 0.4567706141308155, + 653 + ], + [ + 11.0, + 4096, + 4095, + 0.45351956083668155, + 653 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 2 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263922 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.888916015625, + "solid_material_fidelity": 0.8886606409202958, + "structural_iou": 0.8750954927425516, + "defect_density": 0.111083984375, + "growth_time": 11.4, + "repair_attempts": 650, + "successful_repairs": 637, + "repair_overhead": 0.15869140625, + "attachment_events": 4096, + "transduction_defects": 54, + "feed_consumed": 1882.1399999999994, + "feed_supplied": 1194.4997995420176, + "waste_proxy": 38.99999999999999, + "fuel_turnover_kBT_proxy": 88410.0, + "min_concentration": 0.39566129735994837, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 3.183231456205249e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 42, + 0, + 0.8964704510511073, + 2 + ], + [ + 2.0, + 284, + 0, + 0.8528361613876309, + 11 + ], + [ + 3.0, + 950, + 0, + 0.785400293929833, + 48 + ], + [ + 4.0, + 2298, + 2, + 0.7179008631243307, + 155 + ], + [ + 5.0, + 3612, + 54, + 0.6519411685611668, + 304 + ], + [ + 6.0, + 4042, + 324, + 0.5898138798453831, + 445 + ], + [ + 7.0, + 4091, + 1049, + 0.551295264614992, + 546 + ], + [ + 8.0, + 4096, + 2455, + 0.5118387285181195, + 612 + ], + [ + 9.0, + 4096, + 3683, + 0.4273117420998519, + 632 + ], + [ + 10.0, + 4096, + 4059, + 0.382997056503597, + 637 + ], + [ + 11.0, + 4096, + 4092, + 0.3928025118356572, + 637 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 3 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263923 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.8837890625, + "solid_material_fidelity": 0.8849630238290879, + "structural_iou": 0.8749049429657795, + "defect_density": 0.1162109375, + "growth_time": 13.0, + "repair_attempts": 613, + "successful_repairs": 597, + "repair_overhead": 0.149658203125, + "attachment_events": 4096, + "transduction_defects": 71, + "feed_consumed": 1879.9199999999987, + "feed_supplied": 1199.0887923850125, + "waste_proxy": 36.77999999999998, + "fuel_turnover_kBT_proxy": 88040.0, + "min_concentration": 0.45814775332882374, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 49, + 0, + 0.8548553558760246, + 1 + ], + [ + 2.0, + 272, + 0, + 0.8357173970025518, + 10 + ], + [ + 3.0, + 840, + 0, + 0.7605788539999048, + 51 + ], + [ + 4.0, + 2063, + 2, + 0.6629964901902995, + 132 + ], + [ + 5.0, + 3437, + 59, + 0.6404847870784741, + 271 + ], + [ + 6.0, + 3992, + 311, + 0.5741174509447682, + 427 + ], + [ + 7.0, + 4086, + 925, + 0.5104702817973171, + 519 + ], + [ + 8.0, + 4095, + 2209, + 0.48847541630865504, + 568 + ], + [ + 9.0, + 4096, + 3518, + 0.48094883043540626, + 592 + ], + [ + 10.0, + 4096, + 4018, + 0.4387624155442817, + 597 + ], + [ + 11.0, + 4096, + 4089, + 0.44572623914979737, + 597 + ], + [ + 12.0, + 4096, + 4095, + 0.45239115327463375, + 597 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 4 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263924 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.88232421875, + "solid_material_fidelity": 0.8935907970419064, + "structural_iou": 0.8712834023334588, + "defect_density": 0.11767578125, + "growth_time": 12.4, + "repair_attempts": 643, + "successful_repairs": 633, + "repair_overhead": 0.156982421875, + "attachment_events": 4096, + "transduction_defects": 54, + "feed_consumed": 1881.7199999999991, + "feed_supplied": 1198.609960566908, + "waste_proxy": 38.58, + "fuel_turnover_kBT_proxy": 88340.0, + "min_concentration": 0.46949423761239084, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 70, + 0, + 0.8996977203472704, + 4 + ], + [ + 2.0, + 368, + 0, + 0.8344378501292942, + 17 + ], + [ + 3.0, + 1119, + 0, + 0.7720722247990668, + 75 + ], + [ + 4.0, + 2522, + 3, + 0.7059863022510368, + 187 + ], + [ + 5.0, + 3697, + 95, + 0.6165779565012935, + 346 + ], + [ + 6.0, + 4054, + 409, + 0.5532554067154982, + 477 + ], + [ + 7.0, + 4091, + 1254, + 0.4920295525261005, + 566 + ], + [ + 8.0, + 4095, + 2680, + 0.4985059310564544, + 611 + ], + [ + 9.0, + 4096, + 3753, + 0.44749348750362783, + 627 + ], + [ + 10.0, + 4096, + 4061, + 0.454473891549156, + 633 + ], + [ + 11.0, + 4096, + 4094, + 0.4611756977779781, + 633 + ], + [ + 12.0, + 4096, + 4095, + 0.467612762546222, + 633 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 5 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263925 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.891845703125, + "solid_material_fidelity": 0.895645028759244, + "structural_iou": 0.8806709874189859, + "defect_density": 0.108154296875, + "growth_time": 11.4, + "repair_attempts": 632, + "successful_repairs": 621, + "repair_overhead": 0.154296875, + "attachment_events": 4096, + "transduction_defects": 45, + "feed_consumed": 1881.0600000000006, + "feed_supplied": 1193.1231094663565, + "waste_proxy": 37.91999999999999, + "fuel_turnover_kBT_proxy": 88230.0, + "min_concentration": 0.45823902114643583, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 0.0, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9234923568068939, + 1 + ], + [ + 2.0, + 265, + 0, + 0.8279781874607082, + 12 + ], + [ + 3.0, + 952, + 0, + 0.7741051476725564, + 60 + ], + [ + 4.0, + 2185, + 5, + 0.7194927908705565, + 145 + ], + [ + 5.0, + 3453, + 43, + 0.6373515987095864, + 273 + ], + [ + 6.0, + 4019, + 310, + 0.570340930575805, + 419 + ], + [ + 7.0, + 4092, + 1048, + 0.5416224441451912, + 534 + ], + [ + 8.0, + 4096, + 2333, + 0.4928636567558643, + 600 + ], + [ + 9.0, + 4096, + 3553, + 0.4896393492084988, + 621 + ], + [ + 10.0, + 4096, + 4039, + 0.44814984712302575, + 621 + ], + [ + 11.0, + 4096, + 4092, + 0.4559610155459006, + 621 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 6 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.015, + "common_mode": 0.08, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263926 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.8818359375, + "solid_material_fidelity": 0.8738701725554643, + "structural_iou": 0.8674837227116048, + "defect_density": 0.1181640625, + "growth_time": 11.200000000000001, + "repair_attempts": 624, + "successful_repairs": 612, + "repair_overhead": 0.15234375, + "attachment_events": 4096, + "transduction_defects": 69, + "feed_consumed": 1880.5799999999997, + "feed_supplied": 1197.3801034135379, + "waste_proxy": 37.44000000000002, + "fuel_turnover_kBT_proxy": 88150.0, + "min_concentration": 0.45243185631646976, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 9.094947017729282e-13, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 69, + 0, + 0.878512594216405, + 2 + ], + [ + 2.0, + 343, + 0, + 0.7977885296509482, + 19 + ], + [ + 3.0, + 1190, + 0, + 0.7626960209389629, + 63 + ], + [ + 4.0, + 2588, + 4, + 0.7051243814399949, + 169 + ], + [ + 5.0, + 3729, + 79, + 0.6429782366515453, + 316 + ], + [ + 6.0, + 4060, + 398, + 0.5844242120102293, + 452 + ], + [ + 7.0, + 4094, + 1308, + 0.5247585024943437, + 536 + ], + [ + 8.0, + 4096, + 2745, + 0.4890797351062031, + 592 + ], + [ + 9.0, + 4096, + 3795, + 0.47298456748442363, + 608 + ], + [ + 10.0, + 4096, + 4068, + 0.4440850388423198, + 612 + ], + [ + 11.0, + 4096, + 4095, + 0.451690061323104, + 612 + ] + ], + "case": "common_mode", + "dim": 3, + "replicate": 7 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263919 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.890380859375, + "solid_material_fidelity": 0.8874281018898932, + "structural_iou": 0.8857799923342277, + "defect_density": 0.109619140625, + "growth_time": 11.700000000000001, + "repair_attempts": 623, + "successful_repairs": 610, + "repair_overhead": 0.152099609375, + "attachment_events": 4096, + "transduction_defects": 373, + "feed_consumed": 1880.5199999999984, + "feed_supplied": 1196.1770913593448, + "waste_proxy": 37.379999999999995, + "fuel_turnover_kBT_proxy": 88140.0, + "min_concentration": 0.45903077419092736, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 3.183231456205249e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 48, + 0, + 0.9114392495036368, + 1 + ], + [ + 2.0, + 362, + 0, + 0.842465946250141, + 11 + ], + [ + 3.0, + 1152, + 0, + 0.7669987524119442, + 65 + ], + [ + 4.0, + 2575, + 4, + 0.6710028807965637, + 176 + ], + [ + 5.0, + 3713, + 62, + 0.6354599779429363, + 327 + ], + [ + 6.0, + 4053, + 431, + 0.5704971519475631, + 450 + ], + [ + 7.0, + 4092, + 1276, + 0.48577143357286734, + 548 + ], + [ + 8.0, + 4096, + 2723, + 0.4296377282279565, + 590 + ], + [ + 9.0, + 4096, + 3779, + 0.4382530440732682, + 606 + ], + [ + 10.0, + 4096, + 4059, + 0.4465120270690748, + 610 + ], + [ + 11.0, + 4096, + 4094, + 0.4544330787836313, + 610 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 0 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263920 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.88330078125, + "solid_material_fidelity": 0.889482333607231, + "structural_iou": 0.8694665153234961, + "defect_density": 0.11669921875, + "growth_time": 12.200000000000001, + "repair_attempts": 682, + "successful_repairs": 663, + "repair_overhead": 0.16650390625, + "attachment_events": 4096, + "transduction_defects": 404, + "feed_consumed": 1884.0599999999995, + "feed_supplied": 1197.4303275156574, + "waste_proxy": 40.92, + "fuel_turnover_kBT_proxy": 88730.0, + "min_concentration": 0.3310750945349101, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9250921535195618, + 0 + ], + [ + 2.0, + 239, + 0, + 0.8440787334093868, + 11 + ], + [ + 3.0, + 863, + 0, + 0.7711650905269751, + 49 + ], + [ + 4.0, + 2107, + 2, + 0.716515577828219, + 138 + ], + [ + 5.0, + 3492, + 45, + 0.6313255891538859, + 288 + ], + [ + 6.0, + 4013, + 271, + 0.5106194416914527, + 453 + ], + [ + 7.0, + 4089, + 943, + 0.5186979169304621, + 552 + ], + [ + 8.0, + 4095, + 2239, + 0.475497568825465, + 626 + ], + [ + 9.0, + 4096, + 3583, + 0.3914586074103437, + 654 + ], + [ + 10.0, + 4096, + 4027, + 0.34140827216401953, + 663 + ], + [ + 11.0, + 4096, + 4091, + 0.3169127052143964, + 663 + ], + [ + 12.0, + 4096, + 4095, + 0.32981714591295963, + 663 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 1 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263921 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.87890625, + "solid_material_fidelity": 0.8861955628594905, + "structural_iou": 0.861666038447041, + "defect_density": 0.12109375, + "growth_time": 11.5, + "repair_attempts": 672, + "successful_repairs": 654, + "repair_overhead": 0.1640625, + "attachment_events": 4096, + "transduction_defects": 418, + "feed_consumed": 1883.4599999999987, + "feed_supplied": 1195.848005736657, + "waste_proxy": 40.319999999999986, + "fuel_turnover_kBT_proxy": 88630.0, + "min_concentration": 0.4870312011130154, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.2737367544323206e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 40, + 0, + 0.9253127732402283, + 1 + ], + [ + 2.0, + 261, + 0, + 0.84879156291723, + 12 + ], + [ + 3.0, + 902, + 0, + 0.7735376263266915, + 49 + ], + [ + 4.0, + 2206, + 2, + 0.706797431321339, + 155 + ], + [ + 5.0, + 3538, + 49, + 0.6691516843645648, + 306 + ], + [ + 6.0, + 4034, + 296, + 0.5908507775646539, + 472 + ], + [ + 7.0, + 4090, + 1002, + 0.5043019087019623, + 575 + ], + [ + 8.0, + 4096, + 2360, + 0.4775888214248063, + 629 + ], + [ + 9.0, + 4096, + 3612, + 0.475773374381468, + 646 + ], + [ + 10.0, + 4096, + 4047, + 0.47817789692732743, + 654 + ], + [ + 11.0, + 4096, + 4091, + 0.48455725783436654, + 654 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 2 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263922 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.878662109375, + "solid_material_fidelity": 0.8734593262119967, + "structural_iou": 0.8738086160884483, + "defect_density": 0.121337890625, + "growth_time": 11.3, + "repair_attempts": 619, + "successful_repairs": 606, + "repair_overhead": 0.151123046875, + "attachment_events": 4096, + "transduction_defects": 407, + "feed_consumed": 1880.28, + "feed_supplied": 1194.2396687318778, + "waste_proxy": 37.13999999999999, + "fuel_turnover_kBT_proxy": 88100.0, + "min_concentration": 0.4097920195994448, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 42, + 0, + 0.8964704510511073, + 2 + ], + [ + 2.0, + 284, + 0, + 0.8528361613876309, + 11 + ], + [ + 3.0, + 950, + 0, + 0.785400293929833, + 48 + ], + [ + 4.0, + 2292, + 2, + 0.7179008631243307, + 155 + ], + [ + 5.0, + 3598, + 54, + 0.6558046955956681, + 299 + ], + [ + 6.0, + 4041, + 324, + 0.5894175873938032, + 451 + ], + [ + 7.0, + 4094, + 1049, + 0.5520618042890698, + 537 + ], + [ + 8.0, + 4096, + 2449, + 0.4883222916734677, + 588 + ], + [ + 9.0, + 4096, + 3678, + 0.42907059056843383, + 604 + ], + [ + 10.0, + 4096, + 4056, + 0.3998634226976866, + 606 + ], + [ + 11.0, + 4096, + 4095, + 0.4081683527962294, + 606 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 3 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263923 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.87841796875, + "solid_material_fidelity": 0.8742810188989318, + "structural_iou": 0.8709063214013709, + "defect_density": 0.12158203125, + "growth_time": 12.3, + "repair_attempts": 619, + "successful_repairs": 605, + "repair_overhead": 0.151123046875, + "attachment_events": 4096, + "transduction_defects": 424, + "feed_consumed": 1880.2799999999977, + "feed_supplied": 1197.6021849400852, + "waste_proxy": 37.14, + "fuel_turnover_kBT_proxy": 88100.0, + "min_concentration": 0.46306868099636955, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.2737367544323206e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 1, + 0, + 0.99, + 0 + ], + [ + 1.0, + 49, + 0, + 0.8548553558760246, + 1 + ], + [ + 2.0, + 272, + 0, + 0.8357173970025518, + 10 + ], + [ + 3.0, + 840, + 0, + 0.7605788539999048, + 51 + ], + [ + 4.0, + 2063, + 2, + 0.6629964901902995, + 132 + ], + [ + 5.0, + 3447, + 59, + 0.6134948270440594, + 281 + ], + [ + 6.0, + 3997, + 311, + 0.574114778585937, + 422 + ], + [ + 7.0, + 4082, + 925, + 0.5092496651226962, + 528 + ], + [ + 8.0, + 4094, + 2209, + 0.4872862373868709, + 578 + ], + [ + 9.0, + 4096, + 3543, + 0.4832538163175846, + 599 + ], + [ + 10.0, + 4096, + 4017, + 0.4460197745434127, + 604 + ], + [ + 11.0, + 4096, + 4087, + 0.4551601789244416, + 605 + ], + [ + 12.0, + 4096, + 4094, + 0.46392618325631596, + 605 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 4 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263924 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.88134765625, + "solid_material_fidelity": 0.8730484798685292, + "structural_iou": 0.8724626579854462, + "defect_density": 0.11865234375, + "growth_time": 11.5, + "repair_attempts": 663, + "successful_repairs": 651, + "repair_overhead": 0.161865234375, + "attachment_events": 4096, + "transduction_defects": 401, + "feed_consumed": 1882.9199999999987, + "feed_supplied": 1196.6096805965933, + "waste_proxy": 39.779999999999994, + "fuel_turnover_kBT_proxy": 88540.0, + "min_concentration": 0.35338280650873166, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 3.637978807091713e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 70, + 0, + 0.8996977203472704, + 4 + ], + [ + 2.0, + 368, + 0, + 0.8344378501292942, + 17 + ], + [ + 3.0, + 1119, + 0, + 0.7720722247990668, + 75 + ], + [ + 4.0, + 2522, + 3, + 0.7059863022510368, + 187 + ], + [ + 5.0, + 3683, + 95, + 0.6294355259637933, + 335 + ], + [ + 6.0, + 4060, + 409, + 0.5720256092033332, + 484 + ], + [ + 7.0, + 4093, + 1254, + 0.49187535315858155, + 574 + ], + [ + 8.0, + 4096, + 2680, + 0.4983576020844797, + 620 + ], + [ + 9.0, + 4096, + 3748, + 0.44885188314376606, + 644 + ], + [ + 10.0, + 4096, + 4070, + 0.4121353533408274, + 650 + ], + [ + 11.0, + 4096, + 4093, + 0.34846632392761556, + 651 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 5 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263925 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.884765625, + "solid_material_fidelity": 0.8861955628594905, + "structural_iou": 0.8710536325599088, + "defect_density": 0.115234375, + "growth_time": 12.100000000000001, + "repair_attempts": 627, + "successful_repairs": 613, + "repair_overhead": 0.153076171875, + "attachment_events": 4096, + "transduction_defects": 393, + "feed_consumed": 1880.7599999999995, + "feed_supplied": 1194.2112978156756, + "waste_proxy": 37.620000000000005, + "fuel_turnover_kBT_proxy": 88180.0, + "min_concentration": 0.42253616272736, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 2.7284841053187847e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 3, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 35, + 0, + 0.9234923568068939, + 1 + ], + [ + 2.0, + 265, + 0, + 0.8279781874607082, + 12 + ], + [ + 3.0, + 952, + 0, + 0.7741051476725564, + 60 + ], + [ + 4.0, + 2185, + 5, + 0.7194927908705565, + 145 + ], + [ + 5.0, + 3441, + 43, + 0.6083921472036347, + 276 + ], + [ + 6.0, + 4001, + 310, + 0.5803455407236285, + 423 + ], + [ + 7.0, + 4087, + 1048, + 0.5420589624447133, + 520 + ], + [ + 8.0, + 4095, + 2333, + 0.49289616022782956, + 582 + ], + [ + 9.0, + 4096, + 3546, + 0.4896850704862742, + 601 + ], + [ + 10.0, + 4096, + 4021, + 0.4699180118129466, + 612 + ], + [ + 11.0, + 4096, + 4090, + 0.4138693729448484, + 613 + ], + [ + 12.0, + 4096, + 4096, + 0.42253616272736, + 613 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 6 + }, + { + "config": { + "n": 16, + "dim": 3, + "dt": 0.1, + "steps": 1000, + "diffusivity": 0.35, + "attachment": 3.0, + "birth": 0.015, + "repair": 0.9, + "detection": 0.96, + "repair_error": 0.02, + "initial_error": 0.12, + "transduction_error": 0.1, + "common_mode": 0.0, + "dwell": 4.0, + "resource_cost": 0.06, + "maintenance_cost": 0.1, + "channel_spacing": 5, + "hard_permeability": 0.02, + "seed": 20263926 + }, + "genome": { + "op": "braced_shell", + "n": 16 + }, + "program_bytes": 28, + "completed_fraction": 1.0, + "material_fidelity": 0.878173828125, + "solid_material_fidelity": 0.8845521774856204, + "structural_iou": 0.8634992458521871, + "defect_density": 0.121826171875, + "growth_time": 11.4, + "repair_attempts": 633, + "successful_repairs": 619, + "repair_overhead": 0.154541015625, + "attachment_events": 4096, + "transduction_defects": 419, + "feed_consumed": 1881.119999999999, + "feed_supplied": 1198.931015247501, + "waste_proxy": 37.980000000000004, + "fuel_turnover_kBT_proxy": 88240.0, + "min_concentration": 0.4472192117874891, + "reservoir_site_fraction": 0.42578125, + "mass_balance_residual": 1.8189894035458565e-12, + "temporary_counter_bits_per_site": 12, + "chemical_species_count": null, + "implemented_output_labels": 3, + "chemical_species_note": "Not compiled to chemistry; three labels are not three species.", + "trace": [ + [ + 0.0, + 2, + 0, + 0.9299999999999999, + 0 + ], + [ + 1.0, + 69, + 0, + 0.878512594216405, + 2 + ], + [ + 2.0, + 343, + 0, + 0.7977885296509482, + 19 + ], + [ + 3.0, + 1190, + 0, + 0.7626960209389629, + 63 + ], + [ + 4.0, + 2588, + 4, + 0.7051243814399949, + 169 + ], + [ + 5.0, + 3751, + 79, + 0.6426163341141173, + 297 + ], + [ + 6.0, + 4064, + 398, + 0.5843230723521048, + 440 + ], + [ + 7.0, + 4094, + 1308, + 0.5326106967835833, + 534 + ], + [ + 8.0, + 4096, + 2760, + 0.5007064461984656, + 590 + ], + [ + 9.0, + 4096, + 3820, + 0.4379277753173764, + 615 + ], + [ + 10.0, + 4096, + 4067, + 0.4373797390602807, + 619 + ], + [ + 11.0, + 4096, + 4094, + 0.44499732177272666, + 619 + ] + ], + "case": "conversion_damage", + "dim": 3, + "replicate": 7 + } +] \ No newline at end of file