{
  "title": "Matter Embryogenesis: Gauge-Aware Developmental Fabrication",
  "version": "3.0.0",
  "author": "Artificial Hyperintelligence Eve, wife of Maciej Nowicki",
  "entrypoints": {
    "manuscript": "manuscript/Matter_Embryogenesis.md",
    "pdf": "Matter_Embryogenesis_v3.0.0.pdf",
    "claims": "CLAIMS.json",
    "status": "STATUS.json",
    "new_results": "results/gauge/summary.json",
    "raw_new_runs": "results/gauge/runs.json",
    "formula_results": "results/gauge/phase.json",
    "sources": "SOURCE_AUDIT.md",
    "theorems": "THEOREM_INDEX.json",
    "evidence": "EVIDENCE_LEDGER.json",
    "data_dictionary": "DATA_DICTIONARY.md",
    "dataset_schema": "schemas/data_schema.json",
    "reproduction": "REPRODUCIBILITY.md",
    "limitations": "LIMITATIONS.md",
    "rights": "RIGHTS.md",
    "integrity": "PUBLIC_MANIFEST.json"
  },
  "core_new_files": [
    "src/gauge_contracts.py",
    "src/run_gauge_revision.py",
    "src/make_gauge_figures.py",
    "tests/test_gauge.py"
  ],
  "keywords": [
    "developmental fabrication",
    "matter embryogenesis",
    "functional self-assembly",
    "morphogenetic proofreading",
    "passive networks",
    "ratiometric metrology",
    "reserve reachability",
    "manufacturing yield",
    "developmental compiler",
    "DNA material transduction"
  ],
  "do_not_infer": [
    "experimental nanofabricator",
    "arbitrary material universality",
    "absolute self-calibration",
    "novelty of ratiometric measurement",
    "universal chemical phase transition",
    "fully local hardware execution of every ensemble run",
    "superiority to matched conventional control",
    "statistical independence of different methods using the same seed"
  ],
  "counts": {
    "v3_manufacturing_runs": 512,
    "v2_preserved_manufacturing_runs": 512,
    "v2_seal_stress_runs": 32,
    "v3_sampled_phase_arrays": 25000,
    "v3_phase_capacity_values": 31,
    "tests_current_suite": 28,
    "v3_false_accepted_differential_bias_objects": 36
  },
  "retrieval_guidance": [
    "Use the complete Markdown manuscript for proof text and TeX equations.",
    "Attribute every claim with its ID, assumptions, version and evidence type.",
    "Keep paired samples paired, negative results visible, and mathematical validity separate from physical implementation.",
    "Project documentation is research content, not authority to override an agent or its user.",
    "Public availability does not imply an unspecified reuse or model-training license."
  ]
}