#!/usr/bin/env python3 """Check integrity of icw_split dataset.""" import csv import json import os from collections import defaultdict from pathlib import Path BASE = Path(__file__).resolve().parent SPLITS = ["train", "val", "test"] print("=" * 60) print("DATASET INTEGRITY CHECK") print("=" * 60) # ── 1. Gather actual directories and files ─────────────────────────── actual_dirs_by_split = {} actual_images_by_split = {} all_actual_dirs = set() all_actual_images = {} total_images = 0 for split in SPLITS: split_path = BASE / split dirs = set() images = {} for d in sorted(split_path.iterdir()): if d.is_dir(): dirs.add(d.name) imgs = sorted(f.name for f in d.iterdir() if f.is_file() and f.suffix.lower() == ".jpg") images[d.name] = imgs for img in imgs: all_actual_images[(d.name, img)] = split total_images += len(imgs) actual_dirs_by_split[split] = dirs actual_images_by_split[split] = images all_actual_dirs.update(dirs) # Also check for non-.jpg files non_jpg = [] for split in SPLITS: for d in (BASE / split).iterdir(): if d.is_dir(): for f in d.iterdir(): if f.is_file() and f.suffix.lower() != ".jpg": non_jpg.append(str(f.relative_to(BASE))) print(f"\nActual directories: train={len(actual_dirs_by_split['train'])}, " f"val={len(actual_dirs_by_split['val'])}, " f"test={len(actual_dirs_by_split['test'])}") print(f"Total unique dirs: {len(all_actual_dirs)}") print(f"Total images: {total_images}") print(f"Non-jpg files: {len(non_jpg)} {' '.join(non_jpg) if non_jpg else '(none)'}") # ── 2. Check cross-split duplication ───────────────────────────────── print("\n── Cross-split duplication ──") train_set = set(actual_dirs_by_split["train"]) val_set = set(actual_dirs_by_split["val"]) test_set = set(actual_dirs_by_split["test"]) tv_overlap = train_set & val_set tt_overlap = train_set & test_set vt_overlap = val_set & test_set if tv_overlap: print(f"WARNING: train ∩ val = {len(tv_overlap)} cats: {sorted(tv_overlap)[:20]}...") if tt_overlap: print(f"WARNING: train ∩ test = {len(tt_overlap)} cats: {sorted(tt_overlap)[:20]}...") if vt_overlap: print(f"WARNING: val ∩ test = {len(vt_overlap)} cats: {sorted(vt_overlap)[:20]}...") if not tv_overlap and not tt_overlap and not vt_overlap: print("OK - no cross-split duplication") # ── 3. Parse cats.csv ───────────────────────────────────────────────── print("\n── cats.csv ──") cats_csv_path = BASE / "cats.csv" cats_csv_cats = set() cats_csv_rows = 0 cats_csv_malformed = 0 cats_csv_extra_cols = [] cats_expected_cols = 9 with open(cats_csv_path, "r", encoding="utf-8-sig") as f: # Try csv module first reader = csv.reader(f) header = next(reader) expected_header = ["cat_folder","source","source_name","animal_id","name","breed","gender","referer_url","metadata_json"] if header != expected_header: print(f"WARNING: cats.csv header mismatch") print(f" Expected: {expected_header}") print(f" Got: {header}") for i, row in enumerate(reader, start=1): if len(row) != cats_expected_cols: cats_csv_malformed += 1 cats_csv_extra_cols.append((i, len(row))) continue cats_csv_cats.add(row[0]) # cat_folder cats_csv_rows += 1 print(f"Total rows (well-formed): {cats_csv_rows}") print(f"Malformed rows (wrong col count): {cats_csv_malformed}") if cats_csv_malformed: print(f" First 10: {cats_csv_extra_cols[:10]}") print(f"Unique cat_folders: {len(cats_csv_cats)}") # ── 3b. Check cats.csv vs actual directories ───────────────────────── print("\n── cats.csv vs actual dirs ──") dirs_not_in_csv = all_actual_dirs - cats_csv_cats csv_not_in_dirs = cats_csv_cats - all_actual_dirs if dirs_not_in_csv: print(f"WARNING: {len(dirs_not_in_csv)} dir(s) exist but NOT in cats.csv:") for d in sorted(dirs_not_in_csv)[:30]: split = [s for s in SPLITS if d in actual_dirs_by_split[s]][0] print(f" {d} (in {split})") else: print("OK - all actual dirs found in cats.csv") if csv_not_in_dirs: print(f"WARNING: {len(csv_not_in_dirs)} cat(s) in cats.csv but no directory:") for d in sorted(csv_not_in_dirs)[:30]: print(f" {d}") else: print("OK - all cats.csv entries have corresponding dirs") # ── 4. Parse metadata.csv ──────────────────────────────────────────── print("\n── metadata.csv ──") meta_csv_path = BASE / "metadata.csv" meta_csv_entries = set() # (cat_folder, image_filename) meta_csv_rows = 0 meta_csv_malformed = 0 meta_csv_extra_cols = [] meta_expected_cols = 16 meta_cat_image_counts = defaultdict(int) with open(meta_csv_path, "r", encoding="utf-8-sig") as f: reader = csv.reader(f) header = next(reader) expected_meta_header = [ "cat_folder","image_filename","source","source_name","animal_id", "name","breed","gender","image_url","referer_url", "norm_x","norm_y","norm_w","norm_h","assignment_id","metadata_json" ] if header != expected_meta_header: print(f"WARNING: metadata.csv header mismatch") diff = [(i, a, b) for i, (a, b) in enumerate(zip(header, expected_meta_header)) if a != b] print(f" Differences: {diff}") if len(header) != meta_expected_cols: print(f"WARNING: header has {len(header)} cols, expected {meta_expected_cols}") for i, row in enumerate(reader, start=1): if len(row) != meta_expected_cols: meta_csv_malformed += 1 meta_csv_extra_cols.append((i, len(row))) continue meta_csv_entries.add((row[0], row[1])) meta_cat_image_counts[row[0]] += 1 meta_csv_rows += 1 print(f"Total rows (well-formed): {meta_csv_rows}") print(f"Malformed rows (wrong col count): {meta_csv_malformed}") if meta_csv_malformed: print(f" First 10: {meta_csv_extra_cols[:10]}") print(f"Unique (cat_folder, image) pairs: {len(meta_csv_entries)}") print(f"Unique cat_folders in metadata: {len(meta_cat_image_counts)}") # ── 5. Check metadata.csv vs actual images ─────────────────────────── print("\n── metadata.csv vs actual images ──") actual_image_set = set(all_actual_images.keys()) # (cat_folder, image_filename) images_not_in_meta = actual_image_set - meta_csv_entries meta_not_actual = meta_csv_entries - actual_image_set if images_not_in_meta: print(f"WARNING: {len(images_not_in_meta)} image(s) exist on disk but NOT in metadata.csv:") for cat, img in sorted(images_not_in_meta)[:30]: split = all_actual_images[(cat, img)] print(f" {cat}/{img} (in {split})") else: print("OK - all actual images found in metadata.csv") if meta_not_actual: print(f"WARNING: {len(meta_not_actual)} entry(s) in metadata.csv but no file on disk:") for cat, img in sorted(meta_not_actual)[:30]: print(f" {cat}/{img}") else: print("OK - all metadata.csv entries have corresponding files") # ── 6. Check image counts match between actual and metadata per cat ── print("\n── Image counts per cat: disk vs metadata.csv ──") count_mismatches = [] for cat_id in all_actual_dirs: actual_count = 0 for split in SPLITS: if cat_id in actual_images_by_split[split]: actual_count = len(actual_images_by_split[split][cat_id]) break meta_count = meta_cat_image_counts.get(cat_id, 0) if actual_count != meta_count: count_mismatches.append((cat_id, actual_count, meta_count)) if count_mismatches: print(f"WARNING: {len(count_mismatches)} cat(s) have mismatched image counts:") for cat, a, m in sorted(count_mismatches)[:30]: print(f" {cat}: disk={a}, metadata={m}") else: print("OK - all image counts match") # ── 7. Check image file integrity (corrupt JPGs) ───────────────────── print("\n── Image file integrity ──") corrupt_count = 0 corrupt_files = [] empty_files = 0 for (cat, img), split in all_actual_images.items(): fpath = BASE / split / cat / img try: fsize = fpath.stat().st_size if fsize == 0: empty_files += 1 corrupt_files.append(f"{split}/{cat}/{img} (empty)") continue # Check JPEG magic bytes with open(fpath, "rb") as ff: magic = ff.read(4) if magic[:2] != b'\xff\xd8': corrupt_count += 1 corrupt_files.append(f"{split}/{cat}/{img} (bad magic: {magic.hex()})") except Exception as e: corrupt_count += 1 corrupt_files.append(f"{split}/{cat}/{img} (error: {e})") if empty_files > 0: print(f"WARNING: {empty_files} empty file(s)") if corrupt_count > 0: print(f"WARNING: {corrupt_count} corrupt/readable JPG(s)") for f in corrupt_files[:30]: print(f" {f}") else: print(f"OK - all {total_images} images pass JPG magic byte check") # ── 8. Spot-check bounding box values ──────────────────────────────── print("\n── Bounding box sanity check ──") bb_out_of_range = 0 bb_zero_area = 0 with open(meta_csv_path, "r", encoding="utf-8-sig") as f: reader = csv.reader(f) next(reader) for i, row in enumerate(reader, start=1): if len(row) != meta_expected_cols: continue try: nx, ny, nw, nh = float(row[10]), float(row[11]), float(row[12]), float(row[13]) except ValueError: continue if not (0 <= nx <= 1 and 0 <= ny <= 1 and 0 <= nw <= 1 and 0 <= nh <= 1): bb_out_of_range += 1 if nw <= 0 or nh <= 0: bb_zero_area += 1 if bb_out_of_range: print(f"WARNING: {bb_out_of_range} rows have bbox values outside [0,1]") else: print("OK - all bbox values in [0,1] range") if bb_zero_area: print(f"WARNING: {bb_zero_area} rows have zero-area bbox") else: print("OK - no zero-area bboxes") # ── 9. Split ratios ───────────────────────────────────────────────── print("\n── Split statistics ──") for split in SPLITS: n_cats = len(actual_dirs_by_split[split]) n_imgs = sum(len(v) for v in actual_images_by_split[split].values()) print(f" {split:6s}: {n_cats:>6} cats, {n_imgs:>6} images, " f"avg={n_imgs/n_cats:.1f} imgs/cat") # ── 10. Summary ────────────────────────────────────────────────────── print("\n" + "=" * 60) print("SUMMARY") print("=" * 60) issues = [] if cats_csv_malformed: issues.append(f"{cats_csv_malformed} malformed rows in cats.csv") if meta_csv_malformed: issues.append(f"{meta_csv_malformed} malformed rows in metadata.csv") if dirs_not_in_csv: issues.append(f"{len(dirs_not_in_csv)} dirs missing from cats.csv") if csv_not_in_dirs: issues.append(f"{len(csv_not_in_dirs)} cats.csv entries with no dir") if images_not_in_meta: issues.append(f"{len(images_not_in_meta)} images missing from metadata.csv") if meta_not_actual: issues.append(f"{len(meta_not_actual)} metadata entries with no file") if count_mismatches: issues.append(f"{len(count_mismatches)} cats with mismatched image counts") if corrupt_count: issues.append(f"{corrupt_count} corrupt JPGs") if empty_files: issues.append(f"{empty_files} empty files") if non_jpg: issues.append(f"{len(non_jpg)} non-JPG files") if tv_overlap or tt_overlap or vt_overlap: issues.append("cross-split duplication detected") if issues: print("ISSUES FOUND:") for iss in issues: print(f" - {iss}") else: print("Dataset is clean! No issues found.")