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README.md CHANGED
@@ -1,6 +1,6 @@
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  ---
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  pretty_name: "GAMBA Functional Region Multiclass"
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- license: mit
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  tags:
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  - biology
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  - genomics
@@ -119,7 +119,8 @@ No supervised model-fitting split is implied by Hugging Face split `all`.
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  |---|---|
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  | `split`, `sequence`, `label`, `pair_id` | Chromosome partition, exact input, functional class, and stable feature ID. |
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  | `category`, `repeat_class`, `scope`, `context_policy` | Source class, nullable repeat class, `full`/`100bp` scope, and context geometry. |
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- | `chrom`, `start`, `end`, `strand` | Zero-based, half-open hg38 feature coordinates. |
 
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  | `context_start`, `context_end` | Forward-genome context coordinates. |
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  | `roi_start`, `roi_end` | Retained feature offsets in oriented `sequence`. |
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  | `pool_start_in_window`, `pool_end_in_window` | Evaluation span; ROI or selected 100 bp subspan. |
@@ -137,7 +138,7 @@ and phyloP features. Labels are unchanged.
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  Processing and verification:
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- https://github.com/TaykhoomDalal/Gamba-Processing/tree/main/Functional-Regions
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  Consens, M. E. et al. *Predicting evolutionary rate as a pretraining task
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  improves genome language model representations*. bioRxiv (2026).
@@ -145,5 +146,7 @@ https://doi.org/10.64898/2026.02.02.703275
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  ## License
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- GAMBA benchmark code/data are MIT licensed. Upstream resources retain their
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- own terms.
 
 
 
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  ---
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  pretty_name: "GAMBA Functional Region Multiclass"
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+ license: other
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  tags:
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  - biology
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  - genomics
 
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  |---|---|
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  | `split`, `sequence`, `label`, `pair_id` | Chromosome partition, exact input, functional class, and stable feature ID. |
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  | `category`, `repeat_class`, `scope`, `context_policy` | Source class, nullable repeat class, `full`/`100bp` scope, and context geometry. |
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+ | `chrom`, `start`, `end`, `source_strand` | Zero-based, half-open hg38 coordinates and biological strand (`.` means unknown). |
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+ | `sequence_orientation` | Explicit `+`/`-` orientation used for sequence geometry and reverse complementation. |
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  | `context_start`, `context_end` | Forward-genome context coordinates. |
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  | `roi_start`, `roi_end` | Retained feature offsets in oriented `sequence`. |
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  | `pool_start_in_window`, `pool_end_in_window` | Evaluation span; ROI or selected 100 bp subspan. |
 
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  Processing and verification:
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+ https://github.com/TaykhoomDalal/Gamba-Processing/commit/549985683a1c52014a64c5781937dd25360f1553
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  Consens, M. E. et al. *Predicting evolutionary rate as a pretraining task
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  improves genome language model representations*. bioRxiv (2026).
 
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  ## License
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+ The processing code derived from GAMBA is MIT licensed under the processing
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+ repository's `LICENSE`. This generated dataset is marked `other`: incorporated
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+ reference sequence, annotations, and phyloP-derived values retain their
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+ upstream terms, so no blanket MIT license is asserted for the Parquets.
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