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README.md
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---
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pretty_name: "GAMBA Functional Region Multiclass"
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license:
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tags:
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- biology
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- genomics
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| `split`, `sequence`, `label`, `pair_id` | Chromosome partition, exact input, functional class, and stable feature ID. |
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| `category`, `repeat_class`, `scope`, `context_policy` | Source class, nullable repeat class, `full`/`100bp` scope, and context geometry. |
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| `chrom`, `start`, `end`, `
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| `context_start`, `context_end` | Forward-genome context coordinates. |
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| `roi_start`, `roi_end` | Retained feature offsets in oriented `sequence`. |
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| `pool_start_in_window`, `pool_end_in_window` | Evaluation span; ROI or selected 100 bp subspan. |
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Processing and verification:
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https://github.com/TaykhoomDalal/Gamba-Processing/
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Consens, M. E. et al. *Predicting evolutionary rate as a pretraining task
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improves genome language model representations*. bioRxiv (2026).
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## License
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---
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pretty_name: "GAMBA Functional Region Multiclass"
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license: other
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tags:
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- biology
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- genomics
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|---|---|
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| `split`, `sequence`, `label`, `pair_id` | Chromosome partition, exact input, functional class, and stable feature ID. |
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| `category`, `repeat_class`, `scope`, `context_policy` | Source class, nullable repeat class, `full`/`100bp` scope, and context geometry. |
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| `chrom`, `start`, `end`, `source_strand` | Zero-based, half-open hg38 coordinates and biological strand (`.` means unknown). |
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| `sequence_orientation` | Explicit `+`/`-` orientation used for sequence geometry and reverse complementation. |
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| `context_start`, `context_end` | Forward-genome context coordinates. |
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| `roi_start`, `roi_end` | Retained feature offsets in oriented `sequence`. |
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| `pool_start_in_window`, `pool_end_in_window` | Evaluation span; ROI or selected 100 bp subspan. |
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Processing and verification:
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https://github.com/TaykhoomDalal/Gamba-Processing/commit/549985683a1c52014a64c5781937dd25360f1553
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Consens, M. E. et al. *Predicting evolutionary rate as a pretraining task
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improves genome language model representations*. bioRxiv (2026).
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## License
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The processing code derived from GAMBA is MIT licensed under the processing
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repository's `LICENSE`. This generated dataset is marked `other`: incorporated
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reference sequence, annotations, and phyloP-derived values retain their
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upstream terms, so no blanket MIT license is asserted for the Parquets.
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functional-multiclass-gamba-100bp-bidi.parquet
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functional-multiclass-gamba-100bp-causal.parquet
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functional-multiclass-gamba-full-bidi.parquet
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functional-multiclass-gamba-full-causal.parquet
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