image imagewidth (px) 1.35k 1.35k | figure_panels stringclasses 1
value | cell_types stringclasses 2
values | n_cells int64 349 1.93k | method stringclasses 2
values | event stringclasses 2
values |
|---|---|---|---|---|---|
pheatmap per-cell coverage-ratio PSI + mean-CI curve + p-value track (4 groups) | Healthy,F0 | 349 | wilcox, BH, min.coverage=2, nboots=200 | STAB2 retained intron chr12:103708536-103711471 (hg38, GENCODE v44/GRCh38-2024-A), tran_id chr12:103705632:103708536:+@chr12:103711471:103711516. One of 6+ nearby candidate RI events in this locus -- this is the one matching the pre-existing 'stab2_ri' finding (SHIBA HC vs F0 q=0.0496 in the min10/default multiple-test... | |
pheatmap per-cell coverage-ratio PSI + mean-CI curve + p-value track (4 groups) | Healthy,F0,F2-3,F4 | 1,929 | kw, BH, min.coverage=2, nboots=2000 | STAB2 retained intron chr12:103708536-103711471 (hg38, GENCODE v44/GRCh38-2024-A), tran_id chr12:103705632:103708536:+@chr12:103711471:103711516. One of 6+ nearby candidate RI events in this locus -- this is the one matching the pre-existing 'stab2_ri' finding (SHIBA HC vs F0 q=0.0496 in the min10/default multiple-test... |
lsec-biomarkers-splicing-viz-stab2-plot-v1
VALERIE v2.1.2 PlotPSI output for the STAB2 event (1929 split LSEC cells, cell.types=Healthy,F0,F2-3,F4, method=kw). Per-group split cells with >=2 region reads (coverage proxy): Healthy=779,F0=426,F2-3=478,F4=166.
Dataset Info
- Rows: 2
- Columns: 6
Columns
| Column | Type | Description |
|---|---|---|
| image | Image(mode=None, decode=True) | PNG plot from PlotPSI: per-cell coverage-ratio PSI heatmap, mean PSI +/- bootstrap CI per group, and -log10 p-value track (kw per coordinate) |
| figure_panels | Value('string') | which panels the single PNG contains |
| cell_types | Value('string') | cell types compared |
| n_cells | Value('int64') | total split cells in the plot |
| method | Value('string') | statistical method / multiple-testing / coverage floor / bootstrap resamples |
| event | Value('string') | alternative splicing event visualized + coordinate/significance provenance |
Generation Parameters
{
"script_name": "upload_biomarkers_artifacts.py",
"model": "VALERIE-2.1.2 (wenweixiong/VALERIE)",
"experiment_name": "lsec-biomarkers-splicing-viz",
"cluster": "turso",
"artifact_status": "final",
"job_id": "turso:75307294",
"canary": false,
"description": "VALERIE v2.1.2 PlotPSI output for the STAB2 event (1929 split LSEC cells, cell.types=Healthy,F0,F2-3,F4, method=kw). Per-group split cells with >=2 region reads (coverage proxy): Healthy=779,F0=426,F2-3=478,F4=166.",
"hyperparameters": {},
"input_datasets": []
}
Usage
from datasets import load_dataset
dataset = load_dataset("depinwang/lsec-biomarkers-splicing-viz-stab2-plot-v1", split="train")
print(f"Loaded {len(dataset)} rows")
Uploaded via RACA hf_utility.
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