Genomics
Collection
A collection of datasets on genomics in Sub-Saharan Africa • 21 items • Updated • 1
Datasets:
sample_id stringlengths 14 14 | subtype stringclasses 3
values | population stringclasses 4
values | country stringclasses 15
values | age float64 25 85 | BMI float64 15 50 | stage stringclasses 4
values | grade float64 1 3 ⌀ | tumor_size_cm float64 0.5 15 ⌀ | histology stringclasses 3
values | ER_status stringclasses 2
values | PR_status stringclasses 2
values | HER2_status stringclasses 2
values | Ki67_percent float64 5 95 ⌀ | parity int64 0 12 | age_at_menarche int64 10 18 | breastfeeding_months int64 0 48 | HIV_status stringclasses 2
values | diabetes stringclasses 2
values | hypertension stringclasses 2
values | OS_1yr float64 0 1 ⌀ | OS_3yr float64 0 1 ⌀ | OS_5yr float64 0 1 ⌀ | DFS_1yr float64 0 1 ⌀ | DFS_3yr float64 0 1 ⌀ | DFS_5yr float64 0 1 ⌀ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SSA_TNBC_00000 | TNBC | African_American | USA | 39.7 | 20.4 | III | 3 | 8.85 | Invasive ductal carcinoma | negative | negative | negative | 60.2 | 4 | 12 | 28 | negative | no | no | 1 | 1 | 0 | 1 | 0 | 0 |
SSA_TNBC_00001 | TNBC | West_Africa | Senegal | 56.2 | 21.4 | IV | 3 | 7.36 | Invasive ductal carcinoma | negative | negative | negative | 71.6 | 3 | 17 | 10 | negative | no | yes | 1 | 1 | 0 | 1 | 0 | 0 |
SSA_TNBC_00002 | healthy | West_Africa | Benin | 54 | 26.1 | null | null | null | null | null | null | null | null | 3 | 14 | 17 | negative | no | yes | null | null | null | null | null | null |
SSA_TNBC_00003 | TNBC | East_Africa | Ethiopia | 42.5 | 29.7 | II | 3 | 2.56 | Invasive ductal carcinoma | negative | negative | negative | 54.9 | 2 | 16 | 11 | negative | yes | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00004 | TNBC | Southern_Africa | Botswana | 69.2 | 24.7 | I | 3 | 5.57 | Invasive ductal carcinoma | negative | negative | negative | 57.2 | 4 | 12 | 18 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00005 | TNBC | East_Africa | Kenya | 53 | 22.6 | IV | 3 | 7.2 | Invasive ductal carcinoma | negative | negative | negative | 69.6 | 1 | 16 | 17 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00006 | TNBC | West_Africa | Mali | 42.3 | 20.6 | II | 3 | 3.37 | Mixed ductal and lobular | negative | negative | negative | 28.9 | 2 | 17 | 24 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00007 | ER_positive | East_Africa | Tanzania | 58.4 | 25.7 | II | 3 | 2.55 | Invasive lobular carcinoma | positive | positive | negative | 5 | 1 | 16 | 18 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00008 | TNBC | West_Africa | Benin | 54.6 | 25.6 | IV | 3 | 9.02 | Invasive ductal carcinoma | negative | negative | negative | 63 | 4 | 13 | 16 | negative | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00009 | ER_positive | East_Africa | Rwanda | 80 | 27.3 | II | 3 | 1.05 | Invasive lobular carcinoma | positive | negative | negative | 5.6 | 3 | 17 | 22 | positive | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00010 | TNBC | East_Africa | Kenya | 58.2 | 21 | II | 3 | 6.32 | Invasive ductal carcinoma | negative | negative | negative | 57.2 | 4 | 14 | 12 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00011 | TNBC | East_Africa | Tanzania | 44.2 | 19.7 | III | 2 | 4.74 | Mixed ductal and lobular | negative | negative | negative | 51.1 | 2 | 14 | 14 | negative | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00012 | TNBC | East_Africa | Ethiopia | 59.9 | 22.5 | I | 3 | 2.37 | Invasive ductal carcinoma | negative | negative | negative | 80.5 | 3 | 15 | 22 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00013 | TNBC | West_Africa | Nigeria | 53.7 | 25.3 | II | 2 | 7.76 | Invasive ductal carcinoma | negative | negative | negative | 45.6 | 5 | 15 | 14 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00014 | TNBC | East_Africa | Rwanda | 33.3 | 26.2 | III | 3 | 4.17 | Invasive lobular carcinoma | negative | negative | negative | 64 | 0 | 15 | 0 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00015 | TNBC | African_American | USA | 35.9 | 33.3 | III | 3 | 4.08 | Invasive ductal carcinoma | negative | negative | negative | 72.3 | 3 | 12 | 12 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00016 | TNBC | East_Africa | Tanzania | 42.5 | 26.8 | II | 2 | 2.38 | Invasive ductal carcinoma | negative | negative | negative | 39.2 | 5 | 15 | 9 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00017 | TNBC | Southern_Africa | Namibia | 40.1 | 25.7 | II | 3 | 4.12 | Invasive lobular carcinoma | negative | negative | negative | 56.8 | 1 | 14 | 6 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00018 | TNBC | East_Africa | Kenya | 38.9 | 30.2 | II | 3 | 7.29 | Invasive ductal carcinoma | negative | negative | negative | 58.3 | 0 | 13 | 0 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00019 | healthy | Southern_Africa | Zimbabwe | 60.4 | 29.3 | null | null | null | null | null | null | null | null | 4 | 12 | 16 | negative | yes | no | null | null | null | null | null | null |
SSA_TNBC_00020 | TNBC | West_Africa | Benin | 63.3 | 34.8 | III | 3 | 6.54 | Invasive ductal carcinoma | negative | negative | negative | 34.8 | 2 | 16 | 12 | negative | no | no | 1 | 1 | 1 | 1 | 0 | 0 |
SSA_TNBC_00021 | TNBC | African_American | USA | 36.4 | 33.7 | IV | 3 | 4.41 | Invasive ductal carcinoma | negative | negative | negative | 47.4 | 3 | 17 | 8 | negative | no | no | 1 | 1 | 0 | 1 | 0 | 0 |
SSA_TNBC_00022 | TNBC | West_Africa | Ghana | 50.3 | 15.6 | II | 2 | 2.43 | Invasive ductal carcinoma | negative | negative | negative | 46.6 | 5 | 14 | 22 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00023 | TNBC | West_Africa | Senegal | 66.4 | 18.2 | III | 3 | 5.54 | Invasive ductal carcinoma | negative | negative | negative | 49.2 | 3 | 15 | 18 | negative | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00024 | ER_positive | West_Africa | Nigeria | 70.5 | 34.8 | III | 2 | 5.61 | Invasive lobular carcinoma | positive | positive | negative | 21.2 | 3 | 14 | 25 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00025 | TNBC | East_Africa | Uganda | 48.2 | 28 | III | 1 | 0.5 | Invasive lobular carcinoma | negative | negative | negative | 70.5 | 1 | 12 | 16 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00026 | ER_positive | East_Africa | Kenya | 54.2 | 25 | III | 3 | 4.45 | Invasive ductal carcinoma | positive | positive | negative | 34.9 | 6 | 15 | 26 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00027 | ER_positive | East_Africa | Tanzania | 78.2 | 36.2 | I | 2 | 1.05 | Invasive ductal carcinoma | positive | positive | negative | 14 | 7 | 15 | 19 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00028 | ER_positive | West_Africa | Benin | 76.5 | 15 | II | 2 | 4.95 | Mixed ductal and lobular | positive | negative | negative | 32.4 | 0 | 11 | 0 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00029 | TNBC | East_Africa | Kenya | 70 | 19.6 | II | 3 | 7.9 | Invasive ductal carcinoma | negative | negative | negative | 65.1 | 2 | 15 | 31 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00030 | TNBC | West_Africa | Nigeria | 49.4 | 27.8 | III | 3 | 3.09 | Invasive lobular carcinoma | negative | negative | negative | 42.6 | 3 | 17 | 27 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00031 | TNBC | Southern_Africa | Zimbabwe | 49.3 | 26.6 | III | 3 | 5.84 | Invasive lobular carcinoma | negative | negative | negative | 33.3 | 3 | 11 | 23 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00032 | TNBC | West_Africa | Benin | 38.7 | 31.7 | III | 3 | 5.54 | Invasive ductal carcinoma | negative | negative | negative | 73.5 | 1 | 14 | 32 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00033 | ER_positive | East_Africa | Uganda | 63.1 | 35.8 | IV | 3 | 6.14 | Invasive ductal carcinoma | positive | positive | negative | 40.4 | 3 | 13 | 18 | negative | yes | yes | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00034 | healthy | West_Africa | Ghana | 49.9 | 30.9 | null | null | null | null | null | null | null | null | 3 | 14 | 11 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00035 | TNBC | West_Africa | Mali | 52 | 15.5 | I | 2 | 0.5 | Invasive lobular carcinoma | negative | negative | negative | 66.2 | 3 | 12 | 22 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00036 | TNBC | Southern_Africa | Namibia | 25 | 37.4 | II | 3 | 7.31 | Invasive ductal carcinoma | negative | negative | negative | 44.6 | 0 | 15 | 0 | positive | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00037 | ER_positive | African_American | USA | 55.1 | 30.2 | I | 3 | 0.63 | Invasive ductal carcinoma | positive | positive | negative | 5 | 2 | 15 | 16 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00038 | TNBC | East_Africa | Tanzania | 67.9 | 21.1 | I | 3 | 1.94 | Invasive ductal carcinoma | negative | negative | negative | 34.6 | 1 | 16 | 10 | negative | no | no | 1 | 1 | 1 | 1 | 0 | 0 |
SSA_TNBC_00039 | TNBC | East_Africa | Uganda | 53.9 | 15 | II | 3 | 7.03 | Invasive ductal carcinoma | negative | negative | negative | 73.1 | 1 | 15 | 32 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00040 | healthy | West_Africa | Nigeria | 25 | 26.7 | null | null | null | null | null | null | null | null | 0 | 14 | 0 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00041 | TNBC | East_Africa | Tanzania | 60.2 | 15.8 | II | 2 | 4 | Invasive ductal carcinoma | negative | negative | negative | 29.4 | 0 | 14 | 0 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00042 | healthy | East_Africa | Rwanda | 70.1 | 20.5 | null | null | null | null | null | null | null | null | 3 | 15 | 15 | negative | no | yes | null | null | null | null | null | null |
SSA_TNBC_00043 | TNBC | Southern_Africa | Namibia | 33.7 | 20.3 | II | 3 | 2.93 | Invasive ductal carcinoma | negative | negative | negative | 19.8 | 6 | 12 | 0 | positive | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00044 | ER_positive | East_Africa | Uganda | 62.8 | 22.8 | III | 2 | 3.37 | Invasive lobular carcinoma | positive | negative | negative | 39.3 | 3 | 12 | 13 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00045 | ER_positive | East_Africa | Kenya | 56.4 | 22.7 | II | 2 | 2.39 | Invasive ductal carcinoma | positive | negative | negative | 36 | 1 | 14 | 15 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00046 | ER_positive | African_American | USA | 65.8 | 23.9 | IV | 1 | 6.25 | Invasive lobular carcinoma | positive | positive | negative | 5 | 3 | 11 | 30 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00047 | healthy | West_Africa | Benin | 63.4 | 25 | null | null | null | null | null | null | null | null | 3 | 15 | 14 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00048 | ER_positive | East_Africa | Rwanda | 58 | 27.6 | I | 1 | 0.51 | Invasive ductal carcinoma | positive | positive | positive | 50.9 | 5 | 15 | 16 | positive | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00049 | TNBC | East_Africa | Uganda | 52.8 | 24 | I | 3 | 7.37 | Mixed ductal and lobular | negative | negative | negative | 50.7 | 3 | 14 | 31 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00050 | TNBC | West_Africa | Mali | 73.6 | 39.8 | II | 3 | 7.9 | Invasive lobular carcinoma | negative | negative | negative | 42 | 1 | 13 | 26 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00051 | TNBC | West_Africa | Senegal | 85 | 23.7 | IV | 3 | 8.29 | Mixed ductal and lobular | negative | negative | negative | 72.4 | 2 | 15 | 11 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00052 | healthy | East_Africa | Kenya | 64.6 | 23.9 | null | null | null | null | null | null | null | null | 2 | 13 | 12 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00053 | TNBC | West_Africa | Senegal | 55.6 | 32.7 | III | 3 | 4.81 | Mixed ductal and lobular | negative | negative | negative | 61.4 | 1 | 15 | 4 | negative | no | no | 1 | 0 | 0 | 1 | 0 | 0 |
SSA_TNBC_00054 | TNBC | Southern_Africa | Zimbabwe | 45.4 | 23.1 | II | 3 | 6.26 | Invasive ductal carcinoma | negative | negative | negative | 48.9 | 3 | 10 | 16 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00055 | ER_positive | West_Africa | Mali | 59.5 | 30 | II | 2 | 4.39 | Invasive lobular carcinoma | positive | positive | negative | 25.6 | 5 | 17 | 31 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00056 | TNBC | West_Africa | Ghana | 53.2 | 20.6 | III | 3 | 4.62 | Invasive ductal carcinoma | negative | negative | negative | 67.9 | 4 | 13 | 14 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00057 | ER_positive | East_Africa | Uganda | 62.2 | 20.9 | IV | 3 | 6.63 | Invasive ductal carcinoma | positive | positive | negative | 32.8 | 3 | 17 | 15 | negative | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00058 | TNBC | West_Africa | Senegal | 26.3 | 27.9 | III | 3 | 4.85 | Invasive ductal carcinoma | negative | negative | negative | 38.3 | 5 | 14 | 24 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00059 | TNBC | West_Africa | Mali | 45.2 | 22.1 | III | 3 | 1.41 | Invasive ductal carcinoma | negative | negative | negative | 63.3 | 6 | 13 | 9 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00060 | TNBC | East_Africa | Uganda | 49.5 | 22 | II | 2 | 3.36 | Invasive ductal carcinoma | negative | negative | negative | 49.7 | 1 | 11 | 20 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00061 | ER_positive | East_Africa | Tanzania | 56.2 | 15 | I | 3 | 5.26 | Invasive ductal carcinoma | positive | positive | negative | 19.1 | 2 | 16 | 14 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00062 | ER_positive | East_Africa | Rwanda | 64.8 | 33.7 | III | 1 | 4.44 | Invasive ductal carcinoma | positive | positive | positive | 39.6 | 3 | 14 | 13 | negative | no | no | 1 | 1 | 1 | 1 | 0 | 0 |
SSA_TNBC_00063 | TNBC | East_Africa | Ethiopia | 73.9 | 28.5 | III | 3 | 6.96 | Invasive lobular carcinoma | negative | negative | negative | 43.4 | 4 | 15 | 23 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00064 | ER_positive | East_Africa | Tanzania | 67.5 | 26.7 | IV | 1 | 7.04 | Invasive ductal carcinoma | positive | positive | negative | 19.4 | 1 | 11 | 5 | negative | yes | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00065 | ER_positive | Southern_Africa | Botswana | 66 | 24.7 | III | 2 | 5.92 | Invasive ductal carcinoma | positive | positive | negative | 41.9 | 3 | 16 | 30 | positive | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00066 | ER_positive | West_Africa | Benin | 69.7 | 16.1 | III | 1 | 4.47 | Invasive ductal carcinoma | positive | positive | negative | 28.5 | 2 | 14 | 26 | negative | no | yes | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00067 | ER_positive | Southern_Africa | Namibia | 77.3 | 30.2 | I | 1 | 2.45 | Invasive ductal carcinoma | positive | positive | negative | 18.4 | 7 | 12 | 22 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00068 | TNBC | West_Africa | Mali | 85 | 28.4 | II | 3 | 6.01 | Mixed ductal and lobular | negative | negative | negative | 69.6 | 4 | 15 | 17 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00069 | TNBC | East_Africa | Rwanda | 56 | 15 | III | 3 | 6.98 | Invasive ductal carcinoma | negative | negative | negative | 80.9 | 5 | 16 | 38 | positive | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00070 | ER_positive | West_Africa | Nigeria | 63.7 | 18.3 | III | 1 | 0.92 | Invasive ductal carcinoma | positive | positive | negative | 30.5 | 1 | 13 | 18 | negative | no | no | 1 | 1 | 1 | 1 | 0 | 0 |
SSA_TNBC_00071 | TNBC | East_Africa | Tanzania | 56.9 | 24.3 | III | 3 | 7.31 | Invasive ductal carcinoma | negative | negative | negative | 55.8 | 5 | 18 | 9 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00072 | ER_positive | West_Africa | Benin | 65.2 | 28 | II | 2 | 3.52 | Invasive ductal carcinoma | positive | negative | negative | 6.3 | 3 | 12 | 15 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00073 | TNBC | West_Africa | Nigeria | 44.1 | 25.6 | II | 3 | 8.17 | Invasive ductal carcinoma | negative | negative | negative | 73.5 | 5 | 15 | 19 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 1 |
SSA_TNBC_00074 | TNBC | West_Africa | Ghana | 53.8 | 15 | III | 3 | 4.26 | Invasive ductal carcinoma | negative | negative | negative | 61.5 | 4 | 13 | 7 | positive | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00075 | TNBC | West_Africa | Nigeria | 44 | 27.2 | III | 3 | 0.78 | Invasive ductal carcinoma | negative | negative | negative | 80.1 | 5 | 15 | 9 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00076 | TNBC | West_Africa | Benin | 64.7 | 25.6 | III | 3 | 1.73 | Invasive ductal carcinoma | negative | negative | negative | 66 | 3 | 18 | 22 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00077 | TNBC | East_Africa | Uganda | 85 | 16.7 | I | 3 | 0.5 | Invasive ductal carcinoma | negative | negative | negative | 51.1 | 5 | 11 | 23 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 0 |
SSA_TNBC_00078 | TNBC | West_Africa | Nigeria | 56.6 | 26.4 | II | 2 | 6.8 | Invasive ductal carcinoma | negative | negative | negative | 47.9 | 7 | 14 | 15 | negative | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00079 | TNBC | East_Africa | Tanzania | 63.1 | 21.1 | III | 3 | 6.66 | Invasive ductal carcinoma | negative | negative | negative | 68.6 | 2 | 17 | 17 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00080 | TNBC | West_Africa | Benin | 67.5 | 15 | IV | 2 | 13.94 | Invasive ductal carcinoma | negative | negative | negative | 47.5 | 3 | 15 | 14 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00081 | TNBC | West_Africa | Mali | 40.2 | 26.5 | IV | 3 | 10.66 | Invasive ductal carcinoma | negative | negative | negative | 26.9 | 4 | 11 | 14 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00082 | TNBC | West_Africa | Nigeria | 62.2 | 31.5 | III | 2 | 9.51 | Invasive ductal carcinoma | negative | negative | negative | 35.9 | 2 | 14 | 5 | negative | no | no | 1 | 1 | 1 | 1 | 0 | 0 |
SSA_TNBC_00083 | healthy | East_Africa | Ethiopia | 60.8 | 31.1 | null | null | null | null | null | null | null | null | 4 | 15 | 19 | negative | yes | yes | null | null | null | null | null | null |
SSA_TNBC_00084 | TNBC | East_Africa | Uganda | 34.7 | 29.1 | III | 2 | 5.79 | Invasive ductal carcinoma | negative | negative | negative | 58.9 | 4 | 16 | 19 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00085 | TNBC | Southern_Africa | South Africa | 50.6 | 26.4 | IV | 2 | 6.43 | Invasive ductal carcinoma | negative | negative | negative | 55.7 | 4 | 18 | 9 | positive | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00086 | healthy | West_Africa | Benin | 25 | 22.6 | null | null | null | null | null | null | null | null | 2 | 17 | 23 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00087 | ER_positive | East_Africa | Tanzania | 39.7 | 18 | IV | 3 | 7.5 | Invasive ductal carcinoma | positive | positive | negative | 27.3 | 4 | 15 | 12 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00088 | TNBC | East_Africa | Rwanda | 37 | 15 | IV | 3 | 7.63 | Invasive ductal carcinoma | negative | negative | negative | 39.7 | 1 | 15 | 22 | negative | no | no | 1 | 0 | 0 | 1 | 1 | 0 |
SSA_TNBC_00089 | healthy | Southern_Africa | Namibia | 37.8 | 28.6 | null | null | null | null | null | null | null | null | 1 | 15 | 21 | positive | no | no | null | null | null | null | null | null |
SSA_TNBC_00090 | ER_positive | Southern_Africa | Zimbabwe | 77.2 | 28.8 | I | 1 | 5.17 | Invasive ductal carcinoma | positive | positive | negative | 14.8 | 3 | 13 | 25 | negative | no | yes | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00091 | healthy | West_Africa | Mali | 40.8 | 23.9 | null | null | null | null | null | null | null | null | 5 | 14 | 4 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00092 | ER_positive | African_American | USA | 63.5 | 37 | II | 2 | 3.43 | Invasive ductal carcinoma | positive | positive | negative | 38.2 | 4 | 14 | 22 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00093 | ER_positive | West_Africa | Ghana | 58.7 | 32.1 | III | 3 | 7.66 | Invasive ductal carcinoma | positive | positive | positive | 17.8 | 4 | 13 | 19 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00094 | TNBC | African_American | USA | 50.5 | 33.4 | III | 3 | 7.96 | Invasive ductal carcinoma | negative | negative | negative | 48.6 | 3 | 11 | 26 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00095 | TNBC | West_Africa | Senegal | 46.5 | 22.3 | II | 2 | 5.84 | Invasive lobular carcinoma | negative | negative | negative | 54.6 | 2 | 11 | 28 | negative | no | no | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00096 | healthy | East_Africa | Ethiopia | 46.5 | 34.5 | null | null | null | null | null | null | null | null | 3 | 15 | 7 | negative | no | no | null | null | null | null | null | null |
SSA_TNBC_00097 | TNBC | East_Africa | Kenya | 61.1 | 32.2 | I | 2 | 3.29 | Invasive ductal carcinoma | negative | negative | negative | 42.3 | 2 | 15 | 15 | negative | no | yes | 1 | 1 | 0 | 1 | 1 | 0 |
SSA_TNBC_00098 | ER_positive | West_Africa | Benin | 30.4 | 18.7 | I | 3 | 2.94 | Invasive lobular carcinoma | positive | positive | negative | 44.6 | 2 | 14 | 25 | negative | no | no | 1 | 1 | 1 | 1 | 1 | 1 |
SSA_TNBC_00099 | healthy | Southern_Africa | Zimbabwe | 67.4 | 29.4 | null | null | null | null | null | null | null | null | 4 | 14 | 26 | negative | no | no | null | null | null | null | null | null |
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TNBC Gene Expression Profiles - Sub-Saharan African Women | Africa (Electric Sheep Africa metadata inventory)
Size category: 10K<n<100K - Formats: csv - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers
Health datasets help researchers examine disease burden, service delivery, risk factors, outcomes, and public-health program performance.
Dataset context from the existing Hugging Face card: ⚠️ Synthetic dataset — Parameterized from published SSA literature, not real observations. Not suitable for empirical analysis or policy inference. Synthetic TNBC Gene Expression Dataset for Sub-Saharan African Women Dataset Summary This dataset contains 50,000 synthetic clinical profiles for Triple-Negative Breast Cancer (TNBC) research, specifically designed to address the critical underrepresentation of African populations in cancer genomics datasets.… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-cancer-triple-negative-breast-cancer-gene-all.
Dataset Profile
| Field | Value |
|---|---|
| Hugging Face repo | electricsheepafrica/africa-synth-cancer-triple-negative-breast-cancer-gene-all |
| Sector | health |
| Topic tags | medical, cancer, genomics, breast-cancer, tnbc, triple-negative-breast-cancer, african-genomics, synthetic-data, gene-expression, clinical-data, fairness, health-equity |
| Modalities | tabular, text |
| Formats | csv |
| Size category | 10K<n<100K |
| Countries | Africa-wide or source-defined African coverage |
| ISO3 coverage | not declared |
| Last modified on HF | 2026-04-14 22:38:30+00:00 |
| Inventory snapshot | 2026-07-16T16:00:34Z |
How To Read This Dataset
- Start from the repository files and the dataset viewer when available.
- Treat the README context as a fast orientation layer; confirm variable definitions and units in the data files before modeling.
- Use explicit country columns when present. When geography is only implied by the title or source metadata, document that assumption in downstream analysis.
- Preserve missing values until you have a defensible imputation rule.
Usage
from datasets import load_dataset
ds = load_dataset("electricsheepafrica/africa-synth-cancer-triple-negative-breast-cancer-gene-all")
print(ds)
split_name = next(iter(ds))
table = ds[split_name]
print(table.features)
print(table[:3])
Convert To Pandas When Tabular
from datasets import Dataset
first_split = ds[next(iter(ds))]
if isinstance(first_split, Dataset):
df = first_split.to_pandas()
print(df.head())
Data Quality Notes
- This card was standardized from the Electric Sheep Africa Hugging Face metadata inventory.
- Exact schema, row counts, and source files should be inspected in the repository data files.
- Metadata gaps from the inventory: country, upstream_publisher, language.
- Do not infer policy meaning from labels alone; confirm definitions, units, and methods in the source material.
Source And Provenance
- Source context: Electric Sheep Africa metadata inventory
- Publisher/source attribution: Public dataset metadata
- License: cc-by-nc-sa-4.0
- Hugging Face URL: https://huggingface.co/datasets/electricsheepafrica/africa-synth-cancer-triple-negative-breast-cancer-gene-all
- Inventory retrieved at:
2026-07-16T16:00:34Z
Suggested Analyses
- Inspect schema and missingness before modeling.
- Profile variables by geography, time, and subgroup columns where present.
- Join with other Electric Sheep Africa datasets using explicit country, year, and indicator fields when available.
- Build reproducible notebooks that cite both the original source context and the Electric Sheep Africa Hugging Face repo.
Citation
@misc{electric_sheep_africa_africa_synth_cancer_triple_negative_breast_cancer_gene_all_2026,
title = {TNBC Gene Expression Profiles - Sub-Saharan African Women | Africa (Electric Sheep Africa metadata inventory)},
author = {Public dataset metadata},
year = {2026},
url = {https://huggingface.co/datasets/electricsheepafrica/africa-synth-cancer-triple-negative-breast-cancer-gene-all},
publisher = {Hugging Face Datasets, engineered by Electric Sheep Africa},
howpublished = {\url{https://huggingface.co/datasets/electricsheepafrica/africa-synth-cancer-triple-negative-breast-cancer-gene-all}}
}
License
Released under cc-by-nc-sa-4.0.
Original source rights remain with the original publisher or data provider. Electric Sheep Africa engineering standardizes discovery metadata, documentation, and usage guidance for analysis on Hugging Face.
About Electric Sheep Africa
Electric Sheep Africa publishes ML-ready African public datasets on Hugging Face.
Provenance: metadata-backed README standardized 2026-08-12 by the Electric Sheep Africa README system. Inventory source: catalog/esa_metadata_inventory/master_metadata.jsonl.
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