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sample_id
stringlengths
13
13
population
stringclasses
5 values
age
int64
25
85
age_group
stringclasses
4 values
menopausal_status
stringclasses
2 values
bmi
float64
16
50
tumor_grade
int64
1
3
stage
stringclasses
3 values
pam50_subtype
stringclasses
5 values
ER_status
stringclasses
2 values
PR_status
stringclasses
2 values
HER2_status
stringclasses
2 values
is_TNBC
bool
2 classes
MKI67_expr
float64
3.04
15
ESR1_expr
float64
-2.47
16.8
PGR_expr
float64
-3.74
19.1
ERBB2_expr
float64
3.92
18
KRT5_expr
float64
-2.34
18.3
KRT17_expr
float64
-2.27
17.4
ki67_percentage
float64
1
95
ki67_category
stringclasses
3 values
oncotype_RS
float64
0
85
oncotype_risk_category
stringclasses
4 values
BC_EXPR_00000
East_Africa
45
40-49
Premenopausal
27.470105
2
I
Luminal_B
Positive
Negative
Negative
false
8.038647
13.496433
8.126695
7.824229
3.659226
4.750888
41.755224
High
31
High
BC_EXPR_00001
African_American
69
60+
Postmenopausal
37.02163
3
II
Luminal_A
Positive
Positive
Negative
false
6.395625
12.274254
9.450265
8.331696
2.546398
1.925218
6.206005
Low
19
Intermediate
BC_EXPR_00002
African_American
62
60+
Postmenopausal
18.339915
3
III
Basal_like
Negative
Negative
Negative
true
8.88416
4.962818
4.589455
7.61288
9.442868
8.321576
71.52867
High
null
Not_applicable
BC_EXPR_00003
Southern_Africa
42
40-49
Premenopausal
29.169572
3
II
Luminal_A
Positive
Positive
Negative
false
7.857127
11.483532
12.428676
9.735361
3.388792
5.718212
9.871087
Low
16
Low
BC_EXPR_00004
West_Africa
68
60+
Postmenopausal
22.284547
3
II
Luminal_B
Positive
Positive
Negative
false
8.368848
11.67559
11.073603
8.180882
2.841286
4.296187
42.899863
High
40
High
BC_EXPR_00005
West_Africa
28
<40
Premenopausal
30.537486
3
II
Basal_like
Negative
Negative
Negative
true
9.975968
4.697587
1.923763
6.576615
10.130453
7.783528
69.716334
High
null
Not_applicable
BC_EXPR_00006
West_Africa
50
40-49
Postmenopausal
16.700862
2
II
Basal_like
Positive
Negative
Negative
false
9.722417
2.585533
5.842536
11.084115
9.663683
8.187194
41.570962
High
41
High
BC_EXPR_00007
African_American
45
40-49
Premenopausal
29.973569
3
II
HER2_enriched
Negative
Negative
Positive
false
11.072849
7.827139
2.64128
13.955018
3.733661
2.88445
46.045689
High
null
Not_applicable
BC_EXPR_00008
Central_Africa
30
<40
Premenopausal
39.633413
2
III
Basal_like
Negative
Negative
Negative
true
10.21317
3.731066
-1.178684
7.111551
8.574477
8.908142
77.508567
High
null
Not_applicable
BC_EXPR_00009
African_American
41
40-49
Premenopausal
24.725062
2
I
Luminal_A
Positive
Positive
Negative
false
7.696975
11.820842
9.438013
9.612323
1.620756
2.771434
12.140287
Low
8
Low
BC_EXPR_00010
West_Africa
46
40-49
Premenopausal
18.954324
2
III
Luminal_A
Positive
Positive
Negative
false
7.691656
12.407932
9.632356
8.587826
4.463743
1.887622
5.415106
Low
16
Low
BC_EXPR_00011
African_American
59
50-59
Postmenopausal
31.95923
3
III
Basal_like
Negative
Negative
Negative
true
9.812791
2.699866
6.141524
8.75392
8.817874
11.138107
66.529286
High
null
Not_applicable
BC_EXPR_00012
African_American
67
60+
Postmenopausal
26.102912
3
III
Basal_like
Negative
Negative
Negative
true
9.880341
7.888404
4.419137
5.881717
15.637628
11.777842
71.003574
High
null
Not_applicable
BC_EXPR_00013
West_Africa
64
60+
Postmenopausal
33.661149
2
II
Basal_like
Negative
Negative
Negative
true
10.048232
5.805364
4.525237
7.468743
11.800332
9.452897
55.455476
High
null
Not_applicable
BC_EXPR_00014
West_Africa
50
40-49
Postmenopausal
34.595254
2
II
Basal_like
Negative
Negative
Negative
true
10.786331
3.02101
3.341459
8.279296
10.599133
8.843119
75.616231
High
null
Not_applicable
BC_EXPR_00015
West_Africa
41
40-49
Premenopausal
34.19048
1
III
HER2_enriched
Negative
Negative
Positive
false
9.906151
2.619276
3.172017
13.978526
6.084839
2.248133
43.135838
High
null
Not_applicable
BC_EXPR_00016
East_Africa
58
50-59
Postmenopausal
27.845883
3
II
Basal_like
Negative
Negative
Negative
true
12.222338
4.555737
2.379116
7.987876
7.942005
8.070082
74.02506
High
null
Not_applicable
BC_EXPR_00017
Southern_Africa
44
40-49
Premenopausal
38.943432
3
III
Basal_like
Negative
Negative
Negative
true
7.322844
3.799922
2.220067
8.449603
13.322644
13.399928
36.959884
High
null
Not_applicable
BC_EXPR_00018
East_Africa
26
<40
Premenopausal
32.766989
3
III
Basal_like
Negative
Negative
Negative
true
10.720107
5.177911
3.266485
7.131704
8.353568
8.985803
70.157996
High
null
Not_applicable
BC_EXPR_00019
East_Africa
57
50-59
Postmenopausal
23.659138
1
III
Basal_like
Negative
Negative
Negative
true
10.728435
2.697349
3.6339
8.237452
11.661564
8.80795
38.42548
High
null
Not_applicable
BC_EXPR_00020
Central_Africa
63
60+
Postmenopausal
24.098652
3
I
HER2_enriched
Negative
Negative
Positive
false
8.086802
3.364108
4.533089
11.168272
4.280642
6.695326
49.827921
High
null
Not_applicable
BC_EXPR_00021
West_Africa
37
<40
Premenopausal
35.826097
2
III
HER2_enriched
Positive
Positive
Positive
false
8.008004
8.49515
5.706107
14.161854
5.935968
3.248343
35.234051
High
null
Not_applicable
BC_EXPR_00022
East_Africa
69
60+
Postmenopausal
32.013366
2
II
Luminal_B
Positive
Positive
Positive
false
11.73629
11.703845
4.800095
8.497901
5.44087
2.835846
52.229896
High
null
Not_applicable
BC_EXPR_00023
East_Africa
52
50-59
Postmenopausal
23.672619
2
I
Luminal_A
Positive
Positive
Negative
false
6.762855
11.521569
12.24673
8.697274
3.281305
3.913025
15.667683
Intermediate
10
Low
BC_EXPR_00024
Southern_Africa
57
50-59
Postmenopausal
25.85486
3
I
Luminal_B
Positive
Positive
Negative
false
9.875981
13.00379
10.921088
6.34163
5.678638
4.296403
42.081773
High
31
High
BC_EXPR_00025
African_American
48
40-49
Premenopausal
27.616907
2
I
Basal_like
Negative
Negative
Negative
true
10.851321
4.843671
3.637761
4.779342
11.360866
7.960141
60.232815
High
null
Not_applicable
BC_EXPR_00026
West_Africa
59
50-59
Postmenopausal
32.921831
2
III
Basal_like
Negative
Negative
Negative
true
8.315069
3.202828
2.652983
8.361736
10.833392
8.511115
62.600676
High
null
Not_applicable
BC_EXPR_00027
Southern_Africa
33
<40
Premenopausal
26.661971
3
I
HER2_enriched
Positive
Negative
Positive
false
8.007934
6.456504
5.355086
14.601927
5.273126
3.264104
50.509708
High
null
Not_applicable
BC_EXPR_00028
Southern_Africa
47
40-49
Premenopausal
35.888478
3
II
Luminal_B
Positive
Positive
Positive
false
9.897475
9.903836
9.535153
8.839638
5.261216
5.190934
31.989741
High
null
Not_applicable
BC_EXPR_00029
West_Africa
38
<40
Premenopausal
30.171608
3
III
Basal_like
Negative
Negative
Negative
true
10.035581
2.06922
2.26854
8.457888
10.416428
10.841255
46.932879
High
null
Not_applicable
BC_EXPR_00030
Central_Africa
32
<40
Premenopausal
36.178709
3
II
Luminal_B
Positive
Positive
Positive
false
8.799916
13.987814
9.517303
10.486042
1.181185
3.054411
32.674915
High
null
Not_applicable
BC_EXPR_00031
West_Africa
57
50-59
Postmenopausal
21.120848
1
II
Basal_like
Negative
Negative
Negative
true
10.345524
7.360896
4.471289
8.540563
11.172849
8.292628
56.390436
High
null
Not_applicable
BC_EXPR_00032
West_Africa
51
50-59
Postmenopausal
37.001473
2
II
Luminal_A
Positive
Negative
Negative
false
8.297803
11.886485
10.051889
8.650345
3.04309
2.058309
13.6195
Low
26
Intermediate
BC_EXPR_00033
African_American
64
60+
Postmenopausal
35.018689
2
II
Normal_like
Negative
Negative
Negative
true
8.409321
12.79956
8.268923
7.368183
0.548326
4.842992
19.800126
Intermediate
null
Not_applicable
BC_EXPR_00034
African_American
51
50-59
Postmenopausal
28.450039
3
II
Basal_like
Negative
Negative
Negative
true
8.815218
4.439664
4.418272
8.624064
8.554476
9.63163
83.631896
High
null
Not_applicable
BC_EXPR_00035
African_American
66
60+
Postmenopausal
24.849428
3
I
Basal_like
Negative
Negative
Negative
true
13.33834
6.209935
2.474796
5.62171
12.18493
6.510856
83.156545
High
null
Not_applicable
BC_EXPR_00036
East_Africa
46
40-49
Premenopausal
35.814037
3
II
Luminal_A
Positive
Positive
Negative
false
7.061218
13.198306
14.302456
7.070939
3.037077
5.964985
3.254498
Low
30
Intermediate
BC_EXPR_00037
West_Africa
41
40-49
Premenopausal
25.24915
3
I
Luminal_B
Positive
Positive
Negative
false
9.143417
8.590056
11.26208
9.070089
5.049303
-0.560719
24.108899
Intermediate
22
Intermediate
BC_EXPR_00038
Central_Africa
40
<40
Premenopausal
27.968023
1
II
Basal_like
Negative
Negative
Negative
true
9.406493
3.017862
2.150948
7.785096
10.098074
8.582265
48.246333
High
null
Not_applicable
BC_EXPR_00039
East_Africa
25
<40
Premenopausal
31.031627
3
III
Basal_like
Negative
Negative
Negative
true
7.828507
4.065596
4.213708
8.912008
8.98543
7.801809
28.138521
Intermediate
null
Not_applicable
BC_EXPR_00040
West_Africa
60
50-59
Postmenopausal
21.186502
1
II
HER2_enriched
Negative
Negative
Positive
false
9.732829
3.377839
2.332829
12.963265
6.373718
3.833079
49.554347
High
null
Not_applicable
BC_EXPR_00041
Southern_Africa
64
60+
Postmenopausal
26.90369
3
II
Basal_like
Negative
Negative
Negative
true
11.771109
4.24885
-0.380149
8.079899
11.395825
5.573779
65.924058
High
null
Not_applicable
BC_EXPR_00042
West_Africa
82
60+
Postmenopausal
22.470243
3
II
Luminal_B
Positive
Positive
Positive
false
8.139945
8.954619
11.330332
11.334418
4.310254
5.176597
39.798823
High
null
Not_applicable
BC_EXPR_00043
African_American
50
40-49
Postmenopausal
18.66257
3
II
Basal_like
Negative
Negative
Negative
true
9.741452
4.996723
3.909694
7.391354
10.727884
5.136703
65.729793
High
null
Not_applicable
BC_EXPR_00044
East_Africa
37
<40
Premenopausal
40.504173
2
I
Basal_like
Negative
Negative
Negative
true
8.49033
4.324255
3.223987
7.643797
13.576207
14.219631
46.709927
High
null
Not_applicable
BC_EXPR_00045
Central_Africa
27
<40
Premenopausal
24.069747
3
II
Basal_like
Negative
Negative
Negative
true
11.543626
4.941314
5.276625
9.838332
12.543232
7.464359
78.898505
High
null
Not_applicable
BC_EXPR_00046
East_Africa
57
50-59
Postmenopausal
31.743424
1
III
Basal_like
Negative
Negative
Negative
true
10.052281
3.632682
4.687206
8.889237
6.998643
8.967912
76.332826
High
null
Not_applicable
BC_EXPR_00047
Southern_Africa
60
50-59
Postmenopausal
40.566477
2
I
Luminal_B
Positive
Positive
Negative
false
8.692308
9.193378
8.21941
7.794458
3.168532
5.226831
50.610319
High
47
High
BC_EXPR_00048
Southern_Africa
70
60+
Postmenopausal
24.200035
1
II
Luminal_A
Positive
Positive
Negative
false
7.765853
12.295344
8.287198
7.952205
3.436567
4.267958
11.065372
Low
11
Low
BC_EXPR_00049
West_Africa
36
<40
Premenopausal
20.438324
3
III
Luminal_A
Positive
Negative
Negative
false
8.104257
11.776036
13.982905
7.805768
2.212663
3.720403
6.720273
Low
0
Low
BC_EXPR_00050
African_American
63
60+
Postmenopausal
38.572295
2
III
Luminal_A
Positive
Positive
Negative
false
6.218708
11.314919
7.482996
9.59108
2.394973
1.756416
7.752103
Low
22
Intermediate
BC_EXPR_00051
African_American
48
40-49
Premenopausal
22.410656
2
I
Basal_like
Negative
Negative
Negative
true
11.25771
2.511387
2.048592
6.795121
9.354078
9.214562
64.028595
High
null
Not_applicable
BC_EXPR_00052
African_American
71
60+
Postmenopausal
25.534874
3
III
Basal_like
Negative
Negative
Negative
true
9.921219
5.810853
4.745973
7.898412
10.446445
9.244579
66.742803
High
null
Not_applicable
BC_EXPR_00053
African_American
61
60+
Postmenopausal
24.579092
3
III
Basal_like
Negative
Negative
Negative
true
11.578096
5.246775
3.557508
8.966526
10.590739
8.328878
71.433843
High
null
Not_applicable
BC_EXPR_00054
Southern_Africa
33
<40
Premenopausal
28.928664
3
III
Luminal_B
Positive
Positive
Positive
false
10.013143
12.312178
4.830794
10.66268
3.829252
5.354717
32.996042
High
null
Not_applicable
BC_EXPR_00055
African_American
53
50-59
Postmenopausal
17.073294
3
II
HER2_enriched
Positive
Positive
Positive
false
8.003027
5.048879
3.520709
11.293587
6.157367
4.110196
47.854382
High
null
Not_applicable
BC_EXPR_00056
West_Africa
25
<40
Premenopausal
31.732907
3
II
Basal_like
Negative
Negative
Negative
true
11.714498
3.063125
6.105845
6.614835
10.779367
10.944961
40.034887
High
null
Not_applicable
BC_EXPR_00057
West_Africa
33
<40
Premenopausal
30.791443
1
I
Basal_like
Negative
Negative
Negative
true
9.48277
2.962284
3.096516
9.830821
14.508187
9.980368
59.150753
High
null
Not_applicable
BC_EXPR_00058
West_Africa
33
<40
Premenopausal
33.191545
3
II
Luminal_B
Positive
Positive
Positive
false
9.010618
11.131871
12.14644
9.582974
0.60639
3.871571
56.566509
High
null
Not_applicable
BC_EXPR_00059
East_Africa
38
<40
Premenopausal
33.069745
3
II
Basal_like
Negative
Negative
Negative
true
9.675915
3.070483
2.32546
7.828304
7.975951
6.841461
64.32642
High
null
Not_applicable
BC_EXPR_00060
East_Africa
42
40-49
Premenopausal
30.723391
3
II
Basal_like
Negative
Negative
Negative
true
9.142677
6.266233
5.390886
8.88007
7.544714
7.381452
68.159204
High
null
Not_applicable
BC_EXPR_00061
East_Africa
47
40-49
Premenopausal
26.165924
1
III
Basal_like
Negative
Negative
Negative
true
11.536533
5.916309
1.340356
8.518929
10.388508
9.02759
80.320533
High
null
Not_applicable
BC_EXPR_00062
African_American
56
50-59
Postmenopausal
28.351688
3
III
Luminal_A
Positive
Positive
Negative
false
6.058418
11.393378
8.603745
8.910125
3.92755
3.813064
6.450667
Low
31
High
BC_EXPR_00063
East_Africa
45
40-49
Premenopausal
24.089612
3
II
Basal_like
Negative
Negative
Negative
true
9.557456
2.694289
2.444772
9.300531
6.478167
8.044485
30.094489
High
null
Not_applicable
BC_EXPR_00064
East_Africa
49
40-49
Premenopausal
29.161991
2
II
Basal_like
Negative
Negative
Negative
true
12.893302
6.537796
4.315843
8.871929
10.735985
11.171988
56.442535
High
null
Not_applicable
BC_EXPR_00065
Southern_Africa
37
<40
Premenopausal
23.259124
1
II
Luminal_A
Positive
Positive
Negative
false
7.585159
10.547467
12.556449
9.019525
4.226261
4.460306
10.783382
Low
26
Intermediate
BC_EXPR_00066
West_Africa
47
40-49
Premenopausal
28.821965
3
II
Luminal_A
Positive
Positive
Negative
false
4.65417
10.68082
14.677416
8.638829
0.434333
3.927039
1
Low
20
Intermediate
BC_EXPR_00067
African_American
72
60+
Postmenopausal
25.359061
3
I
Luminal_A
Positive
Positive
Negative
false
7.138884
10.379869
11.243224
9.798829
5.274553
1.746812
9.375131
Low
19
Intermediate
BC_EXPR_00068
West_Africa
45
40-49
Premenopausal
23.094686
3
II
Basal_like
Negative
Negative
Negative
true
8.996391
6.010179
4.29785
8.99953
12.462983
10.206752
91.039612
High
null
Not_applicable
BC_EXPR_00069
African_American
60
50-59
Postmenopausal
34.301463
3
II
Luminal_B
Positive
Positive
Positive
false
8.388976
10.380612
12.720953
9.689236
2.982822
3.593169
26.020416
Intermediate
null
Not_applicable
BC_EXPR_00070
African_American
59
50-59
Postmenopausal
32.758909
2
III
Luminal_A
Positive
Positive
Negative
false
7.53029
10.848944
10.113325
7.681341
3.441333
5.412419
14.58803
Intermediate
22
Intermediate
BC_EXPR_00071
West_Africa
57
50-59
Postmenopausal
28.341447
3
I
HER2_enriched
Positive
Negative
Negative
false
10.543396
6.26272
2.213519
12.436377
3.109776
4.686464
56.700035
High
28
Intermediate
BC_EXPR_00072
West_Africa
50
40-49
Postmenopausal
17.542889
3
I
Luminal_A
Positive
Positive
Negative
false
6.181389
12.309984
12.006443
8.02402
2.785187
7.281584
2.870455
Low
8
Low
BC_EXPR_00073
African_American
65
60+
Postmenopausal
22.726118
2
I
Luminal_A
Positive
Positive
Negative
false
8.048615
11.459441
12.248512
8.887372
3.987326
3.335731
8.191461
Low
24
Intermediate
BC_EXPR_00074
African_American
61
60+
Postmenopausal
27.538398
3
I
Basal_like
Negative
Negative
Negative
true
8.268254
2.803816
5.806806
8.161039
8.706976
6.927401
63.342525
High
null
Not_applicable
BC_EXPR_00075
African_American
62
60+
Postmenopausal
30.83787
3
I
HER2_enriched
Positive
Negative
Positive
false
7.407897
7.439527
6.118802
14.427229
3.442038
2.861322
41.963448
High
null
Not_applicable
BC_EXPR_00076
African_American
60
50-59
Postmenopausal
30.937432
3
III
HER2_enriched
Positive
Positive
Positive
false
10.207386
9.277288
5.524988
14.120024
5.047903
4.494426
35.863585
High
null
Not_applicable
BC_EXPR_00077
West_Africa
34
<40
Premenopausal
29.390854
3
II
Basal_like
Positive
Negative
Negative
false
11.070702
3.055596
2.129105
6.448469
13.297726
7.909029
61.914117
High
20
Intermediate
BC_EXPR_00078
East_Africa
31
<40
Premenopausal
28.183211
3
II
HER2_enriched
Positive
Negative
Positive
false
9.086797
4.308436
5.607512
12.216211
3.428288
3.344883
53.941967
High
null
Not_applicable
BC_EXPR_00079
West_Africa
42
40-49
Premenopausal
26.707655
3
II
Basal_like
Negative
Negative
Negative
true
9.718553
1.11743
3.812666
8.091314
10.095578
9.626159
47.637322
High
null
Not_applicable
BC_EXPR_00080
African_American
73
60+
Postmenopausal
24.230004
2
I
Luminal_A
Positive
Positive
Negative
false
8.470867
11.149664
7.89408
9.881205
5.550296
4.56539
11.37164
Low
24
Intermediate
BC_EXPR_00081
Central_Africa
45
40-49
Premenopausal
37.933494
3
I
Basal_like
Negative
Negative
Negative
true
9.344811
2.914897
3.211537
8.658972
11.697788
8.334948
66.664855
High
null
Not_applicable
BC_EXPR_00082
East_Africa
49
40-49
Premenopausal
34.195008
3
II
Basal_like
Negative
Negative
Negative
true
12.421891
5.650503
5.66195
7.18645
13.952396
12.275508
60.445039
High
null
Not_applicable
BC_EXPR_00083
West_Africa
25
<40
Premenopausal
31.496341
1
III
Luminal_A
Positive
Negative
Negative
false
6.186682
10.929965
10.45199
9.799467
2.166842
4.013752
3.655514
Low
17
Low
BC_EXPR_00084
East_Africa
48
40-49
Premenopausal
21.194355
3
II
Luminal_A
Positive
Positive
Negative
false
5.787709
10.074891
9.736729
8.754691
1.629038
5.345428
9.688614
Low
16
Low
BC_EXPR_00085
East_Africa
47
40-49
Premenopausal
20.904233
2
II
Basal_like
Negative
Negative
Negative
true
11.195351
7.085117
6.047543
5.985128
5.411177
8.683173
78.907777
High
null
Not_applicable
BC_EXPR_00086
African_American
25
<40
Premenopausal
27.806887
3
I
Luminal_B
Positive
Positive
Negative
false
9.563031
10.997266
11.713182
10.573599
7.912785
0.701568
36.401939
High
22
Intermediate
BC_EXPR_00087
Central_Africa
51
50-59
Postmenopausal
24.919024
2
II
HER2_enriched
Negative
Negative
Positive
false
9.013097
4.75585
6.246173
12.526439
1.866615
1.114773
69.925093
High
null
Not_applicable
BC_EXPR_00088
African_American
35
<40
Premenopausal
21.163466
3
I
Luminal_A
Positive
Positive
Negative
false
8.060095
10.97675
11.758182
8.737835
2.566816
3.89346
14.964328
Intermediate
11
Low
BC_EXPR_00089
Southern_Africa
43
40-49
Premenopausal
28.625823
1
II
Luminal_A
Positive
Negative
Negative
false
8.633786
10.590477
9.031682
9.388469
5.5448
4.928903
13.183489
Low
9
Low
BC_EXPR_00090
West_Africa
58
50-59
Postmenopausal
16.698015
3
II
Basal_like
Negative
Negative
Negative
true
11.15338
5.091605
3.766636
8.714562
10.200495
11.60996
39.039145
High
null
Not_applicable
BC_EXPR_00091
African_American
56
50-59
Postmenopausal
27.452308
3
II
Basal_like
Negative
Negative
Negative
true
9.709312
3.34771
4.546288
9.651132
12.252947
12.027887
77.021043
High
null
Not_applicable
BC_EXPR_00092
African_American
49
40-49
Premenopausal
31.056924
3
II
Luminal_A
Positive
Positive
Negative
false
9.993878
13.363264
11.530742
8.689898
4.552283
5.95411
15.474211
Intermediate
22
Intermediate
BC_EXPR_00093
Southern_Africa
45
40-49
Premenopausal
30.862293
1
II
Luminal_A
Positive
Positive
Negative
false
9.812618
9.848527
7.745198
8.654953
5.874181
5.471846
13.767391
Low
18
Intermediate
BC_EXPR_00094
African_American
49
40-49
Premenopausal
17.167871
1
I
Basal_like
Negative
Negative
Negative
true
8.000117
2.181603
3.930266
8.19695
11.070446
8.782584
47.917811
High
null
Not_applicable
BC_EXPR_00095
Southern_Africa
53
50-59
Postmenopausal
16.884645
2
II
Basal_like
Negative
Negative
Negative
true
9.369121
4.535569
1.107426
9.37537
9.810762
10.268151
49.536494
High
null
Not_applicable
BC_EXPR_00096
Southern_Africa
37
<40
Premenopausal
26.724378
3
II
Basal_like
Negative
Negative
Negative
true
9.442348
3.967402
3.152081
7.117341
11.184658
10.475165
55.329539
High
null
Not_applicable
BC_EXPR_00097
East_Africa
59
50-59
Postmenopausal
24.212982
2
III
Basal_like
Negative
Negative
Negative
true
10.963305
1.49169
4.621855
8.524308
10.776104
10.212614
66.844784
High
null
Not_applicable
BC_EXPR_00098
West_Africa
33
<40
Premenopausal
20.697138
1
II
Basal_like
Negative
Negative
Negative
true
10.287504
4.258882
4.838047
5.547818
11.723072
9.403184
62.264504
High
null
Not_applicable
BC_EXPR_00099
West_Africa
26
<40
Premenopausal
16
3
I
Luminal_A
Positive
Positive
Negative
false
8.230068
12.399683
10.693309
8.922013
3.964376
2.007591
12.862273
Low
13
Low
End of preview. Expand in Data Studio

Africa Synth Population Tumor Gene Expression African All | Africa (Electric Sheep Africa metadata inventory)

Size category: 10K<n<100K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa

size sector downloads license

TL;DR

This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.

What This Dataset Covers

Health datasets help researchers examine disease burden, service delivery, risk factors, outcomes, and public-health program performance.

Dataset context from the existing Hugging Face card: ⚠️ Synthetic dataset — Parameterized from published SSA literature, not real observations. Not suitable for empirical analysis or policy inference. Tumor Gene Expression Panels in African Breast Cancer Dataset owner: Electric Sheep AfricaDataset type: Synthetic tumor gene expression (Oncotype DX, PAM50, Ki-67)Populations: African and African-descent breast cancer patientsVersion: 1.0.0License: CC-BY-NC-4.0 1. Dataset Description This dataset provides synthetic tumor… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-population-tumor-gene-expression-african-all.

Dataset Profile

Field Value
Hugging Face repo electricsheepafrica/africa-synth-population-tumor-gene-expression-african-all
Sector health
Topic tags medical, oncology, breast-cancer, gene-expression, PAM50, Oncotype-DX, african-populations, synthetic-data, synthetic
Modalities tabular, text
Formats parquet
Size category 10K<n<100K
Countries Africa-wide or source-defined African coverage
ISO3 coverage not declared
Last modified on HF 2026-04-14 22:38:41+00:00
Inventory snapshot 2026-07-16T16:00:34Z

How To Read This Dataset

  • Start from the repository files and the dataset viewer when available.
  • Treat the README context as a fast orientation layer; confirm variable definitions and units in the data files before modeling.
  • Use explicit country columns when present. When geography is only implied by the title or source metadata, document that assumption in downstream analysis.
  • Preserve missing values until you have a defensible imputation rule.

Usage

from datasets import load_dataset

ds = load_dataset("electricsheepafrica/africa-synth-population-tumor-gene-expression-african-all")
print(ds)

split_name = next(iter(ds))
table = ds[split_name]
print(table.features)
print(table[:3])

Convert To Pandas When Tabular

from datasets import Dataset

first_split = ds[next(iter(ds))]
if isinstance(first_split, Dataset):
    df = first_split.to_pandas()
    print(df.head())

Data Quality Notes

  • This card was standardized from the Electric Sheep Africa Hugging Face metadata inventory.
  • Exact schema, row counts, and source files should be inspected in the repository data files.
  • Metadata gaps from the inventory: country, upstream_publisher.
  • Do not infer policy meaning from labels alone; confirm definitions, units, and methods in the source material.

Source And Provenance

Suggested Analyses

  • Inspect schema and missingness before modeling.
  • Profile variables by geography, time, and subgroup columns where present.
  • Join with other Electric Sheep Africa datasets using explicit country, year, and indicator fields when available.
  • Build reproducible notebooks that cite both the original source context and the Electric Sheep Africa Hugging Face repo.

Citation

@misc{electric_sheep_africa_africa_synth_population_tumor_gene_expression_african_all_2026,
  title        = {Africa Synth Population Tumor Gene Expression African All | Africa (Electric Sheep Africa metadata inventory)},
  author       = {Public dataset metadata},
  year         = {2026},
  url          = {https://huggingface.co/datasets/electricsheepafrica/africa-synth-population-tumor-gene-expression-african-all},
  publisher    = {Hugging Face Datasets, engineered by Electric Sheep Africa},
  howpublished = {\url{https://huggingface.co/datasets/electricsheepafrica/africa-synth-population-tumor-gene-expression-african-all}}
}

License

Released under cc-by-nc-4.0.

Original source rights remain with the original publisher or data provider. Electric Sheep Africa engineering standardizes discovery metadata, documentation, and usage guidance for analysis on Hugging Face.

About Electric Sheep Africa

Electric Sheep Africa publishes ML-ready African public datasets on Hugging Face.


Provenance: metadata-backed README standardized 2026-08-12 by the Electric Sheep Africa README system. Inventory source: catalog/esa_metadata_inventory/master_metadata.jsonl.

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