| { |
| "dataset": "NanoR2MED", |
| "benchmark": "R2MED", |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "bm25_top_k": 100, |
| "splits": [ |
| { |
| "split": "NanoR2MEDBiology", |
| "source_task": "R2MEDBiologyRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/Biology", |
| "revision": "8b9fec2db9eda4b5742d03732213fbaee8169556" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 103, |
| "corpus": 10000, |
| "qrels": 374, |
| "bm25_rows": 103, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 374, |
| "hits": 374, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.25128449065032643, |
| "ndcg_at_100": 0.4296835025091202, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 103, |
| "source_corpus_count": 57359, |
| "source_qrels_query_count": 103, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 1058, |
| "qrels_rewritten_for_duplicate_text": 9, |
| "forced_queries": 68, |
| "forced_doc_count": 167, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDBioinformatics", |
| "source_task": "R2MEDBioinformaticsRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/Bioinformatics", |
| "revision": "6021fce366892cbfd7837fa85a4128ea93315e18" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 77, |
| "corpus": 10000, |
| "qrels": 226, |
| "bm25_rows": 77, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 226, |
| "hits": 226, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.17857929009122858, |
| "ndcg_at_100": 0.35060738065375957, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 77, |
| "source_corpus_count": 47471, |
| "source_qrels_query_count": 77, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 6, |
| "qrels_rewritten_for_duplicate_text": 1, |
| "forced_queries": 47, |
| "forced_doc_count": 111, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDMedicalSciences", |
| "source_task": "R2MEDMedicalSciencesRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/Medical-Sciences", |
| "revision": "1b48911514c80bf9182222d99752ad75e23b4b47" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 88, |
| "corpus": 10000, |
| "qrels": 244, |
| "bm25_rows": 88, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 244, |
| "hits": 244, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.10428646688120163, |
| "ndcg_at_100": 0.29337732163029967, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 88, |
| "source_corpus_count": 34792, |
| "source_qrels_query_count": 88, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 66, |
| "qrels_rewritten_for_duplicate_text": 0, |
| "forced_queries": 62, |
| "forced_doc_count": 138, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDMedXpertQAExam", |
| "source_task": "R2MEDMedXpertQAExamRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/MedXpertQA-Exam", |
| "revision": "b457ea43db9ae5db74c3a3e5be0a213d0f85ac3a" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 97, |
| "corpus": 10000, |
| "qrels": 292, |
| "bm25_rows": 97, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 292, |
| "hits": 292, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.024462598222211914, |
| "ndcg_at_100": 0.2304796798768815, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 97, |
| "source_corpus_count": 61379, |
| "source_qrels_query_count": 97, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 0, |
| "qrels_rewritten_for_duplicate_text": 0, |
| "forced_queries": 90, |
| "forced_doc_count": 255, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDMedQADiag", |
| "source_task": "R2MEDMedQADiagRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/MedQA-Diag", |
| "revision": "78b585990279cc01a493f876c1b0cf09557fba57" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 118, |
| "corpus": 10000, |
| "qrels": 522, |
| "bm25_rows": 118, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 522, |
| "hits": 522, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.028104212132602936, |
| "ndcg_at_100": 0.2642743613844765, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 118, |
| "source_corpus_count": 56194, |
| "source_qrels_query_count": 118, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 6, |
| "qrels_rewritten_for_duplicate_text": 0, |
| "forced_queries": 109, |
| "forced_doc_count": 440, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDPMCTreatment", |
| "source_task": "R2MEDPMCTreatmentRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/PMC-Treatment", |
| "revision": "53c489a44a3664ba352c07550b72b4525a5968d5" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 150, |
| "corpus": 10000, |
| "qrels": 315, |
| "bm25_rows": 150, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 315, |
| "hits": 315, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.01798988334744109, |
| "ndcg_at_100": 0.2202813875703761, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 150, |
| "source_corpus_count": 28809, |
| "source_qrels_query_count": 150, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 6, |
| "qrels_rewritten_for_duplicate_text": 0, |
| "forced_queries": 106, |
| "forced_doc_count": 186, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDPMCClinical", |
| "source_task": "R2MEDPMCClinicalRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/PMC-Clinical", |
| "revision": "812829522f7eaa407ef82b96717be85788a50f7e" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 114, |
| "corpus": 10000, |
| "qrels": 248, |
| "bm25_rows": 114, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 248, |
| "hits": 248, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.3277008274619314, |
| "ndcg_at_100": 0.4621547795535059, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 114, |
| "source_corpus_count": 60406, |
| "source_qrels_query_count": 114, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 0, |
| "qrels_rewritten_for_duplicate_text": 0, |
| "forced_queries": 46, |
| "forced_doc_count": 63, |
| "missing_positive_doc_count_after_forcing": 0 |
| }, |
| { |
| "split": "NanoR2MEDIIYiClinical", |
| "source_task": "R2MEDIIYiClinicalRetrieval", |
| "source_type": "Retrieval", |
| "source_dataset": { |
| "path": "R2MED/IIYi-Clinical", |
| "revision": "974abbc9bc281c3169180a6aa5d7586cfd2f5877" |
| }, |
| "source_eval_splits": [ |
| "test" |
| ], |
| "query_limit": 200, |
| "doc_limit": 10000, |
| "queries": 129, |
| "corpus": 10000, |
| "qrels": 457, |
| "bm25_rows": 129, |
| "bm25_top_k": 100, |
| "bm25_tokenization": { |
| "mode": "stemmer", |
| "language": "en", |
| "stemmer_algorithm": "english", |
| "tokenizer_name": null, |
| "reason": "language 'en' mapped to stemmer 'english'" |
| }, |
| "qrels_coverage": { |
| "total": 457, |
| "hits": 457, |
| "recall": 1.0 |
| }, |
| "ndcg_at_10": 0.12460354977311297, |
| "ndcg_at_100": 0.33378196865460924, |
| "source_container": "task.corpus/queries/relevant_docs", |
| "source_eval_split_used": "test", |
| "source_query_count": 129, |
| "source_corpus_count": 10449, |
| "source_qrels_query_count": 129, |
| "skipped_queries_with_more_than_bm25_top_k_positives": 0, |
| "skipped_queries_missing_text_or_qrels": 0, |
| "skipped_duplicate_query_texts": 0, |
| "duplicate_doc_texts_removed": 0, |
| "qrels_rewritten_for_duplicate_text": 0, |
| "forced_queries": 113, |
| "forced_doc_count": 268, |
| "missing_positive_doc_count_after_forcing": 0 |
| } |
| ], |
| "skipped": [] |
| } |
|
|
