TITLE: Why is Heegaard Floer Homology defined in terms of Sym$^g\Sigma_g$ instead of Pic$^g\Sigma_g$?
QUESTION [11 upvotes]: Recall the definition of Heegaard Floer homology: $\Sigma_g$ is a closed surface, and $\{\alpha_1,\ldots,\alpha_g\}$ and $\{\beta_1,\ldots,\beta_g\}$ are sets of attaching circles.  Then Heegaard Floer homology is (more or less) the Lagrangian intersection Floer homology of $\mathbb T_\alpha=\prod_{i=1}^g\alpha_i$ and $\mathbb T_\beta=\prod_{i=1}^g\beta_i$ in $\operatorname{Sym}^g\Sigma_g$.
Now if we think of $\Sigma_g$ as a complex curve, then there is a birational map $\phi:\operatorname{Sym}^g\Sigma_g\to\operatorname{Pic}^g\Sigma_g$.

What happens if instead we consider the Lagrangian intersection Floer homology of $\phi(\mathbb T_\alpha)$ and $\phi(\mathbb T_\beta)$ inside $\operatorname{Pic}^g\Sigma_g$?  Are the resulting groups trivially the same, trivially different, or at least interesting?  (if they're not the same, then I guess there may be no good reason why they would even be invariants of the underlying three-manifold).

There is at least one concrete reason (and one philosophical reason) why one might try this definition instead of the original:

There are no holomorphic spheres in $\operatorname{Pic}^g\Sigma_g$ (because it is an abelian variety; in fact the map $\phi$ is exactly contracting all the embedded $\mathbb P^n$'s in the symmetric product).  This means we don't have to worry about some types of bubbling.
$\operatorname{Pic}^g\Sigma_g$ is a complex torus; in particular its topology is very concrete and easy to understand.  Also it is perhaps algebrogeometrically more natural than the symmetric product.
I could imagine that maybe there is some general statement whereby blowing down all the $\mathbb P^n$'s always does something understandable (perhaps nothing) to the Lagrangian intersection Floer homology.

REPLY [7 votes]: There is a tacit assumption behind this question, which I don't think is justified: that the  Abel-Jacobi images of the Heegaard tori $\mathbb{T}_{\alpha}$ and $\mathbb{T}_{\beta}$ are Lagrangian with respect to some reasonable symplectic form on the Jacobian torus. 
One can make the Heegaard tori Lagrangian by using a Kaehler form on the symmetric product that is product-like outside some neighbourhood of the diagonal. And one can probably find symplectic forms for which Abel-Jacobi is a symplectomorphism outside a neighbourhood of the theta-divisor (this is certainly true in the genus 2 case). Doing both of these things at once would suffice to make the images Lagrangian, but this might be tricky to achieve  - and it's perhaps not very natural?