TITLE: Families of abelian varieties on the line (or more generally simply connected varieties)
QUESTION [7 upvotes]: I'm curious whether the following is true:

Question 1: Let $V/\mathbb{C}$ be a smooth connected variety such that $V^\text{an}$ is simply connected. Then, is every abelian scheme $f:\mathscr{A}\to V$ isotrivial?

Specifically I'm curious about the case when $V=\mathbb{A}^1_\mathbb{C}$.
I think the answer to Question 1 is yes by the following line of reasoning. Deligne shows in Theorie de Hodge II that $\mathscr{A}$ is characterized by $(R^1f^\text{an}_\ast\underline{\mathbb{Z}})^\vee$ as polarizable variation of Hodge structure of type $\{(-1,0),(0,-1)\}$. Now, in our case we know that $(R^1f_\ast^\text{an}\underline{\mathbb{Z}})^\vee$ is a $\mathbb{Z}$-local system and so trivial as such. But, of course, there is no a priori reason to believe that the Hodge filtration is constant.
That said, in this article (see the remarks following Theorem 11) any $\mathbb{Q}$-VHS on a simply connected compactifiable complex manifold is actually constant (as a VHS). In particular, this should imply (since every smooth variety is compactifiable by resolution of singularities), by Deligne's theorem that there is a constant family $\underline{A}$ on $V$ and an isogeny $\varphi:\underline{A}\to\mathscr{A}$. But, $\varphi$ must be $\underline{\mathbb{Z}/n\mathbb{Z}}$ and so $\mathscr{A}$ must be $\underline{A/(\mathbb{Z}/n\mathbb{Z})}$ as desired.
Is this correct?
It then leads to the following natural questions

Question 2: Is every $\mathbb{Z}$-VHS on a simply connected compactifiable (perhaps even algebraic) manifold constant?

and

Question 3: Let $V/\mathbb{C}$ be a smooth connected variety such that $\pi^1_{\acute{e}\text{t}}(V)=0$. Then, is every abelian scheme $f:\mathscr{A}\to V$ isotrivial?

I apologize if these are silly questions. 
Also, of note, there must be something truly algebraic happening here as the 'universal family' $\mathscr{E}/\mathbb{H}$ shows.
Thanks!

REPLY [3 votes]: Here's a bit of a long comment which I hope will help the OP. I also answer some of the questions that arose in the comments.
Firstly, any smooth complex algebraic quasi-projective variety carrying an immersive period map is known to be "hyperbolic" in the sense that 
i) it is Brody hyperbolic,  
ii) all its subvarieties are of log-general type, and
iii) the fundamental group of $X$ is infinite (and more...). 
The hardest of these to show is ii) which follows from a theorem of Kang Zuo; see Theorem 0.1 in https://www.researchgate.net/publication/252994947_On_the_negativity_of_kernels_of_Kodaira-Spencer_maps_on_Hodge_bundles_and_applications
or the  more general
Theorem 0.3 in Brunebarbe's http://sma.epfl.ch/~brunebar/Articles/Symmetric%20differentials%20and%20variations%20of%20Hodge%20structures.pdf
These results are used in Lemma 6.3 of http://arxiv.org/pdf/1505.02249v1.pdf . The statement of Lemma 6.3 is a consequence of the statement in Brunebarbe as any PVHS coming from geometry is unipotent (up to finite etale base-change of the base). The result of Zuo is also used in the proof of Proposition 3.1 in Abromovich--Varilly-Alvarado's http://arxiv.org/pdf/1601.02483v2.pdf . I mention these statements as they provide a more direct link to your questions.
To prove iii) you can use the argument given by Arapura or use Theorem 3.1 in Voisin's second book on Hodge theory (which is the same argument as in Arapura's answer).
The above results of Zuo (and Brunebarbe) tell us that all horizontal (smooth) algebraic  subvarieties of period domains of PVHS's are hyperbolic. This is I think also the best one could hope for: the period domains of PVHS's are not in general "hyperbolic".  
Finally, the argument in Arapura's answer is  applied to the stack $\mathcal {A}_{g,1}^{\textrm{an}}$ or, if stackiness bothers you, to the fine moduli space of $g$-dimensional ppav's with full level $3$-structure. It is, in my opinion, unnatural to consider the coarse moduli space (which is not hyperbolic, as it contains copies of the $j$-line) when studying hyperbolicity of parameter spaces of ppav's (or smooth proper curves of genus at least two, or polarized K3 surfaces, polarized Calabi-Yau manifolds, etc.).  Note that Siegel upper half-space $\mathbb H_g$ is the universal cover of the stack $\mathcal {A}_{g,1}$. The holomorphicity of a lift $\mathbb C\to \mathbb H_g$ for a holomorphic map $\mathbb C\to \mathcal A_{g,1}^{\textrm{an}}$ is therefore immediate. 
I can't give you an   intuitive reason as to why $\mathcal A_{g,1, \overline{\mathbb F_p}}$ is no longer hyperbolic when $g\geq 2$. If $g=2$ the non-hyperbolicity comes from the supersingular locus. Does that help?