TITLE: Can $1\ne H\cap H^g\lhd H$ happen if $G$ is a primitive permutation group with stabiliser $H$?
QUESTION [9 upvotes]: Assume everything is finite.
Let $G$ be a primitive permutation group with point stabiliser $G_\alpha$ for some $\alpha$. For $\beta\ne\alpha$, by an arc stabiliser we mean $G_{\alpha\beta}=G_\alpha\cap G_\beta$ and an edge stabiliser we mean $G_{\{\alpha,\beta\}}$, the stabiliser of the set $\{\alpha,\beta\}$. Note that $G_{\{\alpha,\beta\}}\ge G_{\alpha\beta}$.
My question is: can an arc stabiliser $G_{\alpha\beta}\ne 1$ be normal in $G_\alpha$?
This is impossible if $G_{\{\alpha,\beta\}}> G_{\alpha\beta}$. In this case, there exists $g\in G$ such that $\alpha^g=\beta$ and $\beta^g=\alpha$. It follows that $g\in N_G(G_{\alpha\beta})$. Note that $G_\alpha$ is maximal in $G$ and $G_{\alpha\beta}$ cannot be normal in $G$ (otherwise $G_{\alpha\beta}$ will be in the kernel of this action), the normaliser $N_G(G_{\alpha\beta})=G_\alpha$. This gives a contradiction: $g\in G_\alpha$ but $\alpha^g=\beta\ne \alpha$.
I think there might exist an example in the case when $G_{\{\alpha,\beta\}}=G_{\alpha\beta}$. However, by a quick check with Magma there is no such primitive permutation group $G$ with $|G|\le 300$.

An equivalent statement is: Let $G$ be a group and $H$ a maximal and core-free subgroup of $G$. Is it possible that $1\ne H\cap H^g\lhd H$ for some $g\notin H$?
As shown in the comments there by Verret and Holt there is no such example for degree $\le 4095$. I also think the proof or an example, if any, will not be elementary (for example, applying O'Nan-Scott Theorem).

This was initially a MSE question I asked.

REPLY [6 votes]: An example was constructed by Pablo Spiga:
https://arxiv.org/abs/2102.13614
"A generalization of Sims conjecture for finite primitive groups and two point stabilizers in primitive groups"