Datasets:
cell_type stringclasses 15
values |
|---|
Stromal |
DCIS_1 |
Myoepi_ACTA2+ |
Prolif_Invasive_Tumor |
Macrophages_1 |
Macrophages_1 |
Stromal |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Stromal |
Invasive_Tumor |
Invasive_Tumor |
CD8+_T_Cells |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Invasive_Tumor |
Macrophages_1 |
Stromal |
Invasive_Tumor |
Macrophages_1 |
Macrophages_1 |
CD8+_T_Cells |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Macrophages_1 |
Endothelial |
Macrophages_1 |
Invasive_Tumor |
CD8+_T_Cells |
Endothelial |
Invasive_Tumor |
Invasive_Tumor |
Macrophages_1 |
Macrophages_1 |
Stromal |
Stromal |
Invasive_Tumor |
Macrophages_1 |
Stromal |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
DCIS_2 |
Macrophages_1 |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Macrophages_1 |
Invasive_Tumor |
Stromal |
Stromal |
Invasive_Tumor |
Myoepi_ACTA2+ |
Stromal |
Invasive_Tumor |
DCIS_1 |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Stromal |
Stromal |
DCIS_1 |
DCIS_2 |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Stromal |
Invasive_Tumor |
Myoepi_ACTA2+ |
Invasive_Tumor |
Invasive_Tumor |
DCIS_1 |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Endothelial |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
Invasive_Tumor |
Stromal |
Invasive_Tumor |
Invasive_Tumor |
Invasive_Tumor |
Stromal |
End of preview. Expand in Data Studio
MERFISH Breast Cancer Dataset — Representative Sample
This is a representative sample of the full dataset at: https://huggingface.co/datasets/kanand123/st-recon-merfish-breast-cancer
How the sample was created
test_sample.h5: First 5,000 cells fromtest.h5(full test set: ~47K cells)trainval_sample.h5: First 5,000 cells fromtrainval.h5(full trainval set: ~430K cells)- All annotation and index files are included in full (they are small)
- Sampling is sequential (first N rows), preserving the original data format and schema
Full dataset
The complete 218GB dataset is available at: https://huggingface.co/datasets/kanand123/st-recon-merfish-breast-cancer
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