text:
@STRING{JASA = "J. Am. Statist. Ass."}
@STRING{JRSSA = "J. R. Statist. Soc. A"}
@STRING{JRSSB = "J. R. Statist. Soc. B"}
@STRING{JRSSC = "Appl. Stat."}
@STRING{CSDA = "Computational Statistics and Data Analysis"}
@STRING{JMVA = "Journal of Multivariate Analysis"}
@STRING{SMed = "Statistics in Medicine"}

@Article{Kim:2006,
  author = 	 {Sung-Ho Kim},
  title = 	 {Conditional log-linear structures for log-linear modelling},
  journal = 	 CSDA,
  year = 	 2006,
  volume =	 50,
  pages =	 {2044-2064}
}

@Article{Daniels+Gatsonis:1999,
  author = 	 {Michael J. Daniels and Constantine Gatsonis},
  title = 	 {Hierarchical Generalised Linear Models in the Analysis of Variations in Health Care Utilization},
  journal = 	 JASA,
  year = 	 1999,
  volume =	 94,
  pages =	 {29-42}
}

@TECHREPORT{Agresti+etal:2000,
  AUTHOR = {Alan Agresti and James G. Booth and James P. Hobert and Brian Caffo},
  TITLE = {Random Effects Modeling of Categorical Response Data},
  YEAR = 2000,
  INSTITUTION = {University of Florida}
}

@ARTICLE{Aguilar+West:2000,
  AUTHOR = {Omar Aguilar and Mike West},
  TITLE = {Bayesian {D}ynamic {F}actor {M}odels and {P}ortfolio {A}llocation},
  YEAR = 2000,
  JOURNAL = JBES,
  VOLUME = 18,
  PAGES = {338-357}
  }

@ARTICLE{Aitchison+Ho:1989,
  AUTHOR = {John Aitchison and C. H. Ho},
  TITLE = {The {M}ultivariate {P}oisson-{L}og {N}ormal {D}istribution},
  YEAR = 1989,
  JOURNAL = {Biometrika},
  VOLUME =  76,
  SECTION = 4,
  PAGES = {643 - 653}
}

@ARTICLE{Aitchison+Shen:1980,
  AUTHOR = {John Aitchison and S.M. Shen},
  TITLE = {Logistic {N}ormal {D}istributions: {S}ome {P}roperties and {U}ses},
  YEAR = 1980,
  JOURNAL = {Biometrika},
  VOLUME =  67,
  SECTION = 2,
  PAGES = {261 - 272}
}

@Article{Aitkin+Rubin:1985,
  author =   {M. Aitkin and D.B. Rubin},
  title =    {Estimation and hypothesis testing in finite mixture models},
  journal =      JRSSB,
  year =     1985,
  volume =   47,
  pages =    {67-75},
  annote =   {contraints c<d<e}
}

@ARTICLE{Aitkin:1999,
  AUTHOR = {Murray Aitkin},
  TITLE = {A {G}eneral {M}aximum {L}ikelihood {A}nalysis of {V}ariance {C}omponents in {G}eneralized {L}inear {M}odels},
  YEAR = 1999,
  JOURNAL = {Biometrics},
  VOLUME =  55,
  PAGES = {117 - 125}
}

@ARTICLE{Aitkin:2001,
  AUTHOR = {Murray Aitkin},
  TITLE = {Likelihood and {B}ayesian analysis of mixtures},
  YEAR = 2001,
  JOURNAL = {Statistical Modelling},
  VOLUME =  1,
  PAGES = {287 - 304},
  NOTES = {highlights problems with prior specification in bayesian mixture models}
}

@InCollection{Aitkin+Aitkin:2005,
  author =   {Murray Aitkin and Irit Aitkin},
  editor =   {Albert Maydeu-Olivares and John J. McArdle},
  booktitle =    {Contemporary Advances in Psychometrics},
  title =    {Bayesian inference for factor scores},
  publisher =    {Erlbaum},
  year =     2005,
  address =  {New York}
}

@InCollection{Akaike:1973,
  author =   {H. Akaike},
  title =    {Information theory and an extension of the maximum likelihood principle},
  booktitle =    {Breakthroughs in statistics (1992)},
  pages =    {610-624},
  publisher =    {Springer-Verlag},
  year =     1973,
  volume =   1,
  annote =   {reprint of original article}
}

@ARTICLE{Akaike:1978,
  AUTHOR = {H. Akaike},
  TITLE = {Factor analysis and {AIC}},
  YEAR = 1978,
  JOURNAL = {Psychometrika},
  VOLUME = 52,
  PAGES = {317-332}
  }

@ARTICLE{Akman+Raftery:1986,
  AUTHOR = {V.E. Akman and A.E. Raftery},
  TITLE = {Bayes Factors for Non-Homogenous Poisson Processes with Vague Prior Information},
  YEAR = 1986,
  JOURNAL = JRSSB,
  VOLUME = 48,
  SECTION = 3,
  PAGES = {322 - 329}
}

@ARTICLE{Albert+Anderson:1984,
  AUTHOR = {A. Albert and J.A. Anderson},
  TITLE = {On the {E}xistence of {M}aximum {L}ikelihood {E}stimates in {L}ogistic {R}egression {M}odels},
  YEAR = 1994,
  JOURNAL = {Biometrika},
  VOLUME = 71,
  SECTION = 1,
  PAGES = {1-10}
}

@ARTICLE{Ambagaspitiya:,
  AUTHOR = {R.S. Ambagaspitiya},
  TITLE = {On the {C}ompound {G}eneralized {P}oisson {D}istributions},
  YEAR = 9999,
  JOURNAL = {ASTIN Bulletin},
  VOLUME =  24,
  SECTION = 2,
  PAGES = {255 - 264}
}

@ARTICLE{Anderson+Aitkin:1985,
  AUTHOR = {Dorothy A. Anderson and Murray Aitkin},
  TITLE = {Variance {C}omponent {M}odels with {B}inary {R}esponse: {I}nterviewer {V}ariability},
  YEAR = 1985,
  JOURNAL = JRSSB,
  VOLUME =  47,
  SECTION = 2,
  PAGES = {203 - 210},
  NOTES = {seems to give more details on the EM application}
}

@Article{Ashford+Sowden:1970,
  author =   {J. R. Ashford and R. R. Sowden},
  title =    {Multi-variate probit analysis},
  journal =      {Biometics},
  year =     1970,
  volume =   26,
  pages =    {535-546}
}

@Article{Assuncao+etal:2002,
  author =   {Renato M. Assuncao and Joseph E. Potter and Suzana M. Cavenaghi},
  title =    {A {B}ayesian space varying parameter model applied to estimating fertility schedules},
  journal =      SMed,
  year =     2002,
  volume =   21,
  pages =    {2057 - 2075}
}

@BOOK{Atkinson+etal:2004,
  AUTHOR = {Anthony C. Atkinson and Marco Riani and Andrea Cerioli},
  TITLE = {Exploring multivariate data with the forward search},
  YEAR = 2004,
  PUBLISHER = {Springer Verlag},
  ADDRESS = {New York}
  }

@Article{Bailey+Hewson:2004,
  author =   {Trevor C. Bailey and Paul J. Hewson},
  title =    {Simultaneous modelling of multiple traffic safety performance indicators using a multivariate generalised linear mixed model},
  journal =      JRSSA,
  year =     2004,
  volume =   167,
  number =   3,
  pages =    {551-567}
}

@ARTICLE{Bandeen-Roche+etal:1997,
  AUTHOR = {K. Bandeen-Roche and D.L. Miglioretti and S.L. Zeger and P.J. Rathouz},
  TITLE = {Latent variable regression for multiple discrete outcomes},
  JOURNAL = JASA,
  NOTES = {Quantifying human health and functioning poses significant challenges in many research areas. Commonly in the social and behavioral sciences and increasingly in epidemiologic research, multiple indicators are utilized as responses in lieu of an  obvious single measure for an outcome of interest. In this article we study the concomitant latent class model for analyzing such multivariate categorical outcome data. We develop practical theory for reducing and identifying such models. We detail parameter and standard error fitting that parallels standard latent class methodology, thus supplementing the approach proposed by Dayton and Macready. We propose and study diagnostic strategies, exemplifying our methods using physical disability data from an ongoing gerontologic study. Throughout, the focus of our work is on applications for which a primary goal is to study the association between health or functioning and covariates.},
  PAGES = {1375 - 1386},
  YEAR = 1997,
  VOLUME = 92,
  SECTION = 440
}

@Book{Banerjee+etal:2004,
  author =   {Sudipto Banerjee and Bradley P. Carlin and Alan E. Gelfand},
  title =    {Hierarchical Modeling and Analysis for Spatial Data},
  publisher =    {Chapman and Hall / CRC},
  year =     2004,
  address =  {Boca Raton}
}

@Book{Bartholomew+Knott:1999,
  author =   {David Bartholomew and Martin Knott},
  title =    {Latent variable models and factor analysis},
  publisher =    {Arnold},
  year =     1998,
  series =   {Kendall's Library of Statistics 7},
  address =  {London},
  edition =  {2nd}
}

@ARTICLE{Basu+Chib:2003,
  AUTHOR = {Sanjib Basu and Siddhartha Chib},
  TITLE = {Marginal {L}ikelihood and {B}ayes {F}actors for {D}irichlet {P}rocess {M}ixture {M}odels},
  YEAR = 2003,
  JOURNAL = JASA,
  VOLUME = 98,
  SECTION = {461},
  PAGES = {224-235}
}

@InCollection{Beal+Ghahramani:2003,
  AUTHOR = {Matthew J. Beal and Zoubin Ghahramani},
  TITLE = {The {V}ariational {B}ayesian {EM} {A}lgorithm for {I}ncomplete {D}ata: with {A}pplication to {S}coring {G}raphical {M}odel {S}tructures},
  YEAR = 2003,
  BOOKTITLE = {Bayesian Statistics 7},
  EDITOR = {J.M. Bernardo and M.J. Bayarri and J.O. Berger and A.P. Dawid and D. Heckerman and A.F.M. Smith and M. West},
  PUBLISHER = {Oxford University Press}
  }

@ARTICLE{Bedrick+etal:1996,
  AUTHOR = {Edward J. Bedrick and Ronald Christensen and Wesley Johnson},
  TITLE = {A {N}ew {P}erspective on {P}riors for {G}eneralized {L}inear {M}odels},
  YEAR = 1996,
  JOURNAL = JASA,
  VOLUME =  91,
  SECTION = 436,
  PAGES = {1450-1460},
  NOTES = {seems to give more details on the EM application}
}

@BOOK{Bernardo+Smith:2000,
  AUTHOR = {Jose Bernardo and Adrian F.M. Smith},
  TITLE = {Bayesian {T}heory},
  PUBLISHER = {Wiley},
  YEAR = 2000,
  ADDRESS = {Chichester, England}
  }

@Article{Besag+etal:1991,
  author =   {J Besag and J.C. York and A. Mollie},
  title =    {Bayesian image restoration, with two applications in spatial statistics},
  journal =      {Annals of the Institute of Statistical Mathematics},
  year =     1991,
  volume =   43,
  pages =    {1-59}
}

@INBOOK{Best+Thomas:2000,
  AUTHOR = {Nicky Best and Andrew Thomas},
  TITLE = {Bayesian {G}raphical {M}odels and {S}oftware for {GLMs}},
  YEAR = 2000,
  PAGES = {387 - 406},
  CHAPTER = 23
}

@TechReport{Best+etal:1996,
  author =   {Nicky Best and Mary Kathryn Cowles and Karen Vines},
  title =    {Convergence {D}iagnosis and {O}utput {A}nalysis {S}oftware for {G}ibbs sampling output: Version 0.30},
  institution =  {MRC Biostatistics Unit, Institute of Public Health},
  year =     1996,
  address =  {Cambridge}
}

@ARTICLE{Best+etal:1999,
  AUTHOR = {Nicola G. Best and Richard A. Arnold and Andrew Thomas and Lance A. Waller and Erin M. Conlon},
  TITLE = {Bayesian {M}odels for {S}patially {C}orrelated {D}isease and {E}xposure {D}ata},
  YEAR = 1999,
  JOURNAL = {Bayesian Statistics},
  VOLUME = 6,
  PAGES = {131 - 156}
}

@Article{Bockenholt+etal:2003,
  author =   {Ulf Bockenholt and Wagner A. Kamakura and Michel Wedel},
  title =    {The stucture of self-reported emotional experiences: A mixed-effects {P}oisson factor model},
  journal =      {British Journal of Mathematical and Statistical Psychology},
  year =     2003,
  volume =   56,
  pages =    {215-229}
}

@Article{Bohning+Seidel:2003,
  author =   {Dankmar Bohning and Wilfried Seidel},
  title =    {Editorial: recent developments in mixture models},
  journal =      CSDA,
  year =     2003,
  volume =   41,
  number =   {3 - 4},
  pages =    {349 - 357}
}

@BOOK{Bohning:2000,
  AUTHOR = {Dankmar Bohning},
  TITLE = {Computer-{A}ssisted {A}nalysis of {M}ixtures and {A}pplications},
  YEAR = 2000,
  PUBLISHER = {Chapman and Hall / CRC},
  ADDRESS = {London}
}

@ARTICLE{Booth+Hobert:1999,
  AUTHOR = {James G. Booth and James P. Hobert},
  TITLE = {Maximising generalized linear mixed model likelihoods with an automated {M}onte {C}arlo {EM} algorithm},
  YEAR = 1999,
  JOURNAL = JRSSB,
  VOLUME = 61,
  SECTION = 1,
  PAGES = {265 - 285}
}

@TECHREPORT{Booth+etal:2001,
  AUTHOR = {James G. Booth and George Casella and Herwig Freidl and James P. Hobert},
  TITLE = {Negative {B}inomial {L}og {L}inear {M}ixed {M}odels},
  YEAR = 2001,
  INSTITUTION = {Statistics Department, University of Florida}
}

@ARTICLE{Box:1976,
  AUTHOR = {G.E.P. Box},
  TITLE = {Science and {S}tatistics},
  YEAR = 1976,
  JOURNAL = JASA,
  VOLUME = 71,
  PAGES = {791 - 799}
}

@ARTICLE{Box:1980,
  AUTHOR = {G.E.P. Box},
  TITLE = {Sampling and {B}ayes' inference in scientific modelling and robustness (with {D}iscussion},
  YEAR = 1980,
  JOURNAL = JRSSA,
  VOLUME = 143,
  SECTION = 4,
  PAGES = {383-430}
}

@BOOK{Breiman+etal:1984,
  AUTHOR = {Leo Breiman and J.H. Friedman and R.A. Olshen and C.J. Stone},
  TITLE = {Classification and {R}egression {T}rees},
  YEAR = 1984,
  PUBLISHER = {Wadsworth},
  ADDRESS = {Belmont, Ca}
}

@ARTICLE{Breslow+Clayton:1993,
  AUTHOR = {N.E. Breslow and David G. Clayton},
  TITLE = {Approximate {I}nference in {G}eneralized {L}inear {M}ixed {M}odels},
  YEAR = 1993,
  JOURNAL = JASA,
  VOLUME = 88,
  SECTION = 421,
  PAGES = {9 - 25}
}

@Article{Brooks+Gelman:1998,
  author =   {S.P. Brooks and A. Gelman},
  title =    {General Methods for Monitoring Convergence of Iterative Simulations},
  journal =      {Journal of Computational and Statistical Graphics},
  year =     1998,
  volume =   7,
  pages =    {434-355}
}

@ARTICLE{Broughton+etal:1999,
  TITLE = {Influence of light level on the incidence of road casualties and the predicted effect of changing `summertime'},
  YEAR = 1999,
  AUTHOR = {J. Broughton and M. Hazelton and M. Stone},
  JOURNAL = JRSSA,
  VOLUME = 162,
  SECTION = 2,
  PAGES = {137-175}
  }

@ARTICLE{Burgess+etal:2000,
  author = {J.F. Burgess and C.L. Christiansen and S.E. Michalak and C.N. Morris},
  Title = { Medical profiling: improving standards and risk adjustments using hierarchical models},
  JOURNAL = {JOURNAL OF HEALTH ECONOMICS},
  YEAR = 2000,
  Volume =  19,
  SECTIO = 3,
  PAGES = {291-309},
  ANNOTE = {The conclusions from a profile analysis to identify performance extremes can be affected substantially by the standards and statistical methods used and by the adequacy of risk adjustment. Medically meaningful standards are proposed to replace common statistical standards. Hierarchical regression methods can handle several levels of random variation, make risk adjustments for the providers' case-mix differences, and address the proposed standards. These methods determine probabilities needed to make meaningful profiles of medical units based on standards set by all appropriate parties}
  }

@TECHREPORT{Burgess+etalTR:2000,
  AUTHOR = {James F. Burgess and Viridiana Lourdes and Mike West},
  TITLE = {Profiling substance abuse provider trends in health care delivery systems},
  YEAR = 2000,
  INSTITUTION = {ISDS Duke University}
  }

@ARTICLE{Butler:1986,
  AUTHOR = {Ronald W. Butler},
  TITLE = {Predictive {L}ikelihood {I}nference with {A}pplication},
  YEAR = 1986,
  JOURNAL = JRSSB,
  VOLUME = 48,
  PART = 1,
  PAGES = {1 - 38}
}

@MANUAL{Buyske:2003,
  AUTHOR = {Steve Buyske},
  TITLE = {Mixed-Mode Latent Class Regression},
  URL = {http://www.stat.rutgers.edu/~buyske/software.html},
  YEAR = 2003,
  EDITION = {1.3.2}
  }

@ARTICLE{Cameron+Trivedi:1986,
  AUTHOR = {A. Colin Cameron and Pravin K. Trivedi},
  TITLE = {Econometric {M}odels {B}ased on {C}ount {D}ata: {C}omparisons and {A}pplications of some {E}stimators and {T}ests},
  YEAR = 1986,
  JOURNAL = {Jnl. of Applied Econometrics},
  VOLUME =  1,
  SECTION = 1,
  PAGES = {29 - 53}
}

@ARTICLE{Catalano+Ryan:1992,
  AUTHOR = {P.J. Catalano and L.M. Ryan},
  TITLE = {Bivariate {L}atent {V}ariable {M}odels for {C}lustered {D}iscrete and {C}ontinuous {O}utcomes},
  YEAR = 1992,
  JOURNAL = JASA,
  VOLUME = 87,
  PAGES = {651-658}
}

@ARTICLE{Celeux+etal:2000,
  AUTHOR = {Gilles Celeux and Merrilee Hurn and Christian P. Robert},
  TITLE = {Computational and Inferential Difficulties With Mixture Posterior Distributions},
  YEAR = 2000,
  JOURNAL = JASA,
  VOLUME = 95,
  ISSUE = 451,
  PAGES = {957-970}
}

@ARTICLE{Chan+Kuk:1997,
  AUTHOR = {Jennifer S.K. Chan and Anthony Y.C. Kuk},
  TITLE = {Maximum {L}ikelihood {E}stimation for {P}robit-{L}inear {M}ixed {M}odels with {C}orrelated {R}andom {E}ffects},
  YEAR = 1997,
  JOURNAL = {Biometrics},
  VOLUME = 53,
  SECTION = 1,
  PAGES = {86-97}
}

@ARTICLE{Chen+etal:2002,
  AUTHOR = {M.H. Chen and J.G. Ibrahim and D. Sinha},
  TITLE = {Bayesian inference for multivariate survival data with a cure fraction},
  YEAR = 2002,
  JOURNAL = JMVA,
  VOLUME = 80,
  ISSUE = 1,
  PAGES = {101-126}
}

@ARTICLE{Chib+Winkelmann:2001,
  AUTHOR = {S. Chib and R. Winkelmann},
  TITLE = {Markov chain {M}onte {C}arlo analysis of correlated count data},
  NOTES = {This article is concerned with the analysis of correlated count data. A class of models is proposed in which the correlation among the counts is represented by correlated latent effects. Special cases of the model are discussed and a tuned and efficient Markov chain Monte Carlo algorithm is developed to estimate the model under both multivariate normal and multivariate-t assumptions on the latent effects. The methods are illustrated with two real data examples of six and sixteen variate correlated counts.},
  PAGES = {428 - 435},
  JOURNAL = {J. Bus. Econ. Stat.},
  YEAR = 2001,
  VOLUME = 19,
  SECTION = 4
}

@InCollection{Chib:2000,
  AUTHOR = {Siddhartha Chibb},
  TITLE = {Bayesian {M}ethods for {C}orrelated {B}inary {D}ata},
  YEAR = 2000,
  PAGES = {113 - 131},
  CHAPTER = 7,
  EDITOR = {Dipak K. Dey and Sujit K. Ghosh and Bani K Mallick},
  BOOKTITLE = {Generalised linear models: a {B}ayesian perpsective},
  PUBLISHER = {Marcel Dekker},
  ADDRESS = {New York}
}

@TECHREPORT{Chibb+Winkelmann:2000,
  AUTHOR = {Siddhartha Chib and Rainer Winkelmann},
  TITLE = {Markov {C}hain {M}onte {C}arlo {A}nalysis of {C}orrelated {C}ount {D}ata},
  YEAR = 2000,
  INSTITUTION = {University of Washington}
}

@ARTICLE{Chib+Winkelmann:2001,
  AUTHOR = {S. Chib and R. Winkelmann},
  TITLE = {Markov chain Monte Carlo analysis of correlated count data},
  ANONOTE = {This article is concerned with the analysis of correlated count data. A class of models is proposed in which the correlation among the counts is represented by correlated latent effects. Special cases of the model are discussed and a tuned and efficient Markov chain Monte Carlo algorithm is developed to estimate the model under both multivariate normal and multivariate-t assumptions on the latent effects. The methods are illustrated with two real data examples of six and sixteen variate correlated counts.},
  PAGES = {428 - 435},
  JOURNAL = {J. Bus. Econ. Stat.},
  YEAR = 2001,
  VOLUME = 19,
  SECTION = 4
}

@TECHREPORT{Chibb+etal:1996,
  AUTHOR = {Siddhartha Chibb and Edward Greenberg and Rainer Winkelmann},
  TITLE = {Posterior {S}imulation and {B}ayes {F}actors in {P}anel {C}ount {D}ata {M}odels},
  YEAR = 1996,
  INSTITUTION = {University of Washington}
}

@Article{Christensen+Amemiya:2003,
  author =   {William F. Christensen and Yasuo Amemiya},
  title =    {Modeling and prediction for multivariate spatial factor analysis},
  journal =      {Journal of Statistical Planning and Inference},
  year =     2003,
  volume =   115,
  pages =    {543 - 564}
}

@ARTICLE{Christiansen+Morris:1997,
  AUTHOR = {Cindy Christiansen and Carl N. Morris},
  TITLE = {Hierarchical {P}oisson {R}egression {M}odelling},
  YEAR = 1997,
  JOURNAL = JASA,
  VOLUME =  92,
  SECTION = 438,
  PAGES = {618 - 632},
  NOTES = {related to the PRIMM software?}
}

@PhdThesis{Clark:2002,
  author =   {Alan Clarke},
  title =    {Some Problems in Geographical Epidemiology},
  school =   {School of Mathematics and Statistics, University of Aberdeen},
  year =     2002,
  annote =   {With lawson, need to check citation}
}

@Article{Clayton+Kaldor:1987,
  author =   {David G. Clayton and J.M. Kaldor},
  title =    {Empirical {B}ayes estimates of age-standardised relative risks for use in disease mapping},
  journal =      {Biometrics},
  year =     1987,
  volume =   43,
  pages =    {671-681}
}

@TECHREPORT{Clayton:1995,
  AUTHOR = {David Clayton},
  TITLE = {Repeated ordinal measurments: a generalised estimating equation approach},
  YEAR = 1995,
  INSTITUTION = {M.R.C. Cambridge}
}

@BOOK{Congdon:2001,
  AUTHOR = {Peter Congdon},
  TITLE = {Bayesian {S}tatistical {M}odelling},
  YEAR = 2001,
  ADDRESS = {Chichester},
  PUBLISHER = {Wiley}
}

@ARTICLE{Cowles+Carlin:1996,
  AUTHOR = {Mary Kathryn Cowles and Bradley P. Carlin},
  TITLE = {Markov {C}hain {M}onte {C}arlo {C}onvergence {D}iagnostics: A {C}omparative {R}eview},
  YEAR = 1996,
  JOURNAL = JASA,
  VOLUME = 91,
  PART = 434,
  PAGES = {883-904}
}

@ARTICLE{Cox+Wermuth:1992,
  AUTHOR = {D.R. Cox and Nanny Wermuth},
  TITLE = {Response {M}odels for {M}ixed {B}inary and {Q}uantitative {V}ariables},
  YEAR = 1992,
  JOURNAL = {Biometrika},
  VOLUME = 79,
  SECTION = 3,
  PAGES = {441-461}
}

@ARTICLE{Dabney+Wakefield:2005,
  AUTHOR = {Alan Dabney and Jon Wakefield},
  JOURNAL = {Statistical Methods in Medical Research},
  Volume = 14,
  PAGES = {83-112},
  YEAR = 2005,
  ANNOTE = {Recently, there has been increased interest in the geographical modelling of two or more diseases. In this article, we consider a number of issues relating to such an endeavour including the standardization process and the comparison of univariate and bivariate disease mapping models. A principle motivation for the examination of two or more diseases is to discover similarities or dissimilarities in the geographical distribution of risk. In this article, we propose a proportional mortality approach to give clues to areas of similarity and dissimilarity. A secondary aim of bivariate modelling is to 'borrow strength' between diseases in order to provide better estimates of risk in each area. We will illustrate various modelling strategies using incidence data from 1996 to 2000 on lung and bladder cancer in Washington state.}
}

@ARTICLE{Damien+etal:1999,
  AUTHOR = {P. Damien and J. Wakefield and S. Walker},
  TITLE = {Gibbs sampling for {B}ayesian non-conjugate and hierarchical models by using auxillary variables},
  YEAR = 1999,
  JOURNAL = JRSSB,
  VOLUME = 61,
  SECTION = 2,
  PAGES = {331 - 344}
}

@Article{Daniels+Kass:1999,
  author =   {Michael J. Daniels and Robert E. Kass},
  title =    {Nonconjugate Bayesian Estimation of Covariance Matrices and its Use in Hierarchical Models},
  journal =      JASA,
  year =     1999,
  volume =   94,
  number =   448,
  pages =    {1254 - 1263}
}

@Article{Daniels+Kass:2001,
  author =   {Michael J. Daniels and Robert E. Kass},
  title =    {Shrinkage Estimators for Covariance Matrices},
  journal =      {Biometics},
  year =     2001,
  volume =   57,
  pages =    {1173 - 1184},
  month =    {December}
}

@Article{Daniels+Pourahmadi,
  author =   {Michael J. Daniels and Mohsen Pourahmadi},
  title =    {Bayesian analysis of covariance matrices and dynamic models for longitudinal data},
  journal =      {Biometrika},
  year =     2002,
  volume =   89,
  number =   3,
  pages =    {553 - 566}
}

@TECHREPORT{Davis+etal:2001,
  AUTHOR = {Richard A. Davis and Tina Hvid Rydberg and Neil Shepherd and Sarah B. Street},
  TITLE = {The {C}bin model for counts: testing for common features in the speed of trading, quote changes, limit and market order arrivals},
  YEAR = 2001,
  INSTITUTION = {Don't know}
}

@ARTICLE{Dayton+Macready:1988,
  AUTHOR = {C. Mitchell Dayton and George B. Macready},
  TITLE = {Concomitant-Variable {L}atent-{C}lass {M}odels},
  YEAR = 1988,
  JOURNAL = JASA,
  VOLUME = 83,
  SECTION = 401,
  PAGES = {173-178}
}

@ARTICLE{DeSarbo+etal:1999,
  AUTHOR = {Wayne S. DeSarbo and Youngchan Kim and Duncan Fong},
  TITLE = {A {B}ayesian {M}ultidimensional {S}caling {P}rocedure for the {S}patial {A}nalysis of {R}evealved {C}hoice {D}ata},
  YEAR = 1999,
  JOURNAL = {Journal of Econometrics},
  VOLUME = 89,
  PAGES = {79-108},
  NOTES = {Didn't keep a copy of this, just highlights problems in multivariate probit models}
}

@ARTICLE{Dean+MacNab:2001,
  AUTHOR = {Charmaine B. Dean and Ying Cai MacNab},
  TITLE = {Modeling of rates over a hierarchical health administrative structure},
  YEAR = 2001,
  JOURNAL = {The Candadian Journal of Statistics},
  VOLUME =  29,
  SECTION = 3,
  PAGES = {405 - 419}
}

@ARTICLE{Deb+Trivedi:1997,
  AUTHOR = {P. Deb and P.K. Trivedi},
  TITLE = { Demand for medical care by the elderly: A finite mixture approach},
  PAGES = {313 - 336},
  NOTES = {In this article we develop a finite mixture negative binomial count model that accommodates unobserved heterogeneity in an intuitive and analytically tractable manner. This model, the standard negative binomial model, and its hurdle extension are estimated for six measures of medical care demand by the elderly using a sample from the 1987 National Medical Expenditure Survey. The finite mixture model is preferred overall by statistical model selection criteria. Two points of support adequately describe the distribution of the unobserved heterogeneity, suggesting two latent populations, the 'healthy' and the 'ill' whose fitted distributions differ substantially from each other},
  JOURNAL = {J. Appl. Econom.},
  YEAR = 1997,
  VOLUME = 12,
  SECTION = 3
}

@ARTICLE{Deb+Trivedi:2002,
  AUTHOR = {P. Deb and P.K. Trivedi},
  TITLE = { The structure of demand for health care: latent class versus two-part models},
  JOURNAL = {J. Health Econ.},
  PAGES = {601 - 625},
  YEAR = 2002,
  VOLUME = 21,
  SECTION = 4,
  NOTES = { We contrast the two-part model (TPM) that distinguishes between users and non-users of health care, with a latent class model (LCM) that distinguishes between infrequent and frequent users. In model comparisons using data on counts of utilization from the RAND Health Insurance Experiment (RHIE), we find strong evidence in favor of the LCM. We show that individuals in the infrequent and frequent user latent classes may be described as being healthy and ill, respectively. Although sample averages of price elasticities, conditional means and event probabilities are not statistically different, the estimates of these policy-relevant measures are substantively different when calculated for hypothetical individuals with specific characteristics}
}

@INBOOK{Dellaportas+etal:2000,
  AUTHOR = {Petros Dellaportas and Jonathan J. Forster and Ioannis Ntzoufras},
  TITLE = {Bayesian {V}ariable {S}election {U}sing the {G}ibbs {S}ampler},
  YEAR = 2000,
  PAGES = {273 - 286},
  CHAPTER = 3,
  CROSSREF = {Dey+etal:2000}
}

@ARTICLE{Dempster+etal:1977,
  AUTHOR = {A.P. Dempster and N.M. Laird and D.B. Rubin},
  TITLE = {Maximum {L}ikelihood for {I}ncomplete {D}ata via the {EM} {A}lgorithm},
  YEAR = 1997,
  JOURNAL = JRSSB,
  VOLUME = 39,
  SECTION = 1,
  PAGES = {1 - 38}
}

@INBOOK{Dey+Ravishanker:2000,
  AUTHOR = {Dipak K. Dey and Nalini Ravishanker},
  TITLE = {Bayesian {A}pproaches for {O}verdispersion in Generalized {L}inear {M}odels},
  YEAR = 2000,
  PAGES = {73-88},
  CHAPTER = 5,
  CROSSREF = {Dey+etal:2000}
}

@ARTICLE{Diebolt+Robert:1994,
  AUTHOR = {Jean Diebolt and Christian P. Robert},
  TITLE = {Estimation of {F}inite {M}ixture {D}istributions through {B}ayesian {S}ampling},
  YEAR = 1994,
  JOURNAL = JRSSB,
  VOLUME = 56,
  SECTION = 2,
  PAGES = {363-375}
}

@ARTICLE{Dunson:2003,
  AUTHOR = {David Dunson},
  TITLE = {Dynamic {L}atent {T}rait {M}odels for {M}ultidimensional {L}ongitidinal {D}ata},
  YEAR = 2003,
  JOURNAL = JASA,
  VOLUME = 98,
  SECTION = 463,
  PAGES = {555-563}
  }

@ARTICLE{Dunson+Chen:2004,
  AUTHOR = {D.B. Dunson and Z. Chen},
  TITLE = {Selecting factors predictive of heterogeneity in multivariate event time data},
  YEAR = 2004,
  JOURNAL = {Biometrics},
  VOLUME = 60,
  ISSUE = 2,
  PAGES = {352-358}
}

@ARTICLE{Dunson+Perreault:2001,
  AUTHOR  {D.B. Dunson and S.D. Perreault},
  TITLE = {Factor analytic models of clustered multivariate data with informative censoring},
  YEAR = 2001,
  JOURNAL = {Biometrics},
  VOLUME = 57,
  ISSUE = 1,
  PAGES = {30-308}
}

@ARTICLE{Dunson+Herring:2005,
  AUTHOR = {David Dunson and Amy Herring},
  TITLE = {Bayesian latent variables for mixed discrete outcomes},
  YEAR = 2005,
  JOURNAL = {Biostatistics},
  VOLUME = 6,
  ISSUE = 1,
  PAGES = {11-25},
  ANNOTE = {additive gamma errors, i.e. log-linaer, c-log-log and prop haz forms for count, binary and discrete event time}
  }

@TECHREPORT{Edwards+Allenby:2001,
  AUTHOR = {Yancy D. Edwards and Greg M. Allenby},
  TITLE = {Multivariate {A}nalysis of {M}ultiple {R}esponse {D}ata},
  YEAR = 2001,
  INSTITUTION = {Fisher College of Business, Ohio State University},
  ADDRESS = {Columbus, Ohio},
  NOTES = {Propose pca of correlated random effects}
}

@article{Efron:1986,
    AUTHOR = {Efron, Bradley},
    TITLE = {Double {E}xponential {F}amilies and {T}heir {U}se in {G}eneralized {L}inear {R}egression},
    Year = 1986,
    Journal = JASA,
    Volume = 81,
    Pages = {709--721},
    Keywords = {Overdispersion; Quasi-likelihood; Logistic regression;Two-by-two table}
}

@TECHREPORT{Emond+etal:2001,
  AUTHOR = {Mary J. Emond and Adrian E. Raftery and Russell J Steele},
  TITLE = {Easy {C}omputation of {B}ayes {F}actors and {N}ormalizing {C}onstants for {M}ixture {M}odels via {M}ixture {I}mportance {S}ampling},
  YEAR = 2001,
  INSTITUTION = {University of Washington}
}

@BOOK{Fahrmeir+Tutz:2001,
  TITLE = {Multivariate Statistical Modelling Based on Generalized Linear Models},
  AUTHOR = {Ludwig Fahrmeir and Gerhard Tutz},
  YEAR =  2001,
  EDITION = 2,
  PUBLISHER = {Springer},
  ADDRESS = {Berlin}
}

@article{Firth:1988,
    AUTHOR = {David Firth},
    TITLE = {Multiplicative {E}rrors: {L}og-normal Or {G}amma?},
    YEAR = 1988,
    JOURNAL = JRSSB,
    VOLUME = 50,
    PAGES = {266-268},
    KEYWORDS = {Coefficient of variation; Quasi likelihood}
}

@ARTICLE{Fitzmaurice+Laird:1995,
  AUTHOR = {Garrett M. Fitzmaurice and Nan M. Laird},
  TITLE = {Regression {M}odels for a {B}ivariate {D}iscrete and {C}ontinuous {O}utcome with {C}lustering},
  YEAR = 1995,
  JOURNAL = JASA,
  VOLUME = 90,
  SECTION = 431,
  PAGES = {845-852}
}

@TechReport{Fokoue+Titterington:2000,
  author =   {E. Fokoue and D.M. Titterington},
  title =    {Bayesian sampling for mixtures of {F}actor {A}nalysers},
  institution =  {Department of Statistics, University of Glasgow},
  year =     2000,
  number =   {00-3},
  address =  {Glasgow, Scotland}
}

@ARTICLE{Fokoue+Titterington:2003,
  author =   {E. Fokoue and D.M. Titterington},
  title =    {Mixtures of {F}actor {A}nalysers. {B}ayesian {E}stimation and {I}nference by {S}tochastic {S}imulation},
  year =     2003,
  JOURNAL = {Machine Learning},
  VOLUME = 50,
  SECTION = {1-2},
  PAGES = {73-94}
}

@ARTICLE{Gange+etal:1996,
  AUTHOR = {S.J. Gange and A. Munoz and M. Saez and J. Alonso},
  TITLE = {Use of the beta-binomial distribution to model the effect of policy changes on appropriateness of hospital stays},
  YEAR = 1996,
  JOURNAL = JRSSC,
  VOLUME = 45,
  SECTION = 3,
  PAGES = {371-382}
}

@Article{Gelfand+Ghosh:1998,
  author =   {Alan E. Gelfand and Sujit K. Ghosh},
  title =    {Model {C}hoice: {A} {M}inimum {P}osterior {P}redictive {L}oss {A}pproach},
  journal =      {Biometrika},
  year =     1998,
  volume =   85,
  number =   1,
  pages =    {1-11}
}

@InCollection{Gelfand+Ghosh:2000,
  AUTHOR = {Alan E. Gelfand and Malay Ghosh},
  TITLE = {Generalized {L}inear {M}odels: A {B}ayesian {V}iew},
  YEAR = 2000,
  PAGES = {3-21},
  CHAPTER = 1,
  EDITOR = {Dipak K. Dey and Sujit K. Ghosh and Bani K Mallick},
  BOOKTITLE = {Generalised linear models: a {B}ayesian perpsective},
  PUBLISHER = {Marcel Dekker},
  ADDRESS = {New York}
}
@ARTICLE{Gelfand+Vounatsou:2003,
  AUTHOR = {A.E. Gelfand and P. Vounatsou},
  TITLE ={Proper multivariate conditional autoregressive models for spatial data analysis},
  YEAR = 2003,
  JOURNAL = {Biostatistics},
  VOLUME = 4,
  PAGES = {11-15}
  }

@Article{Gelman+Rubin:1992,
  author =   {A. Gelman and D.B. Rubin},
  title =    {Inference from iterative simulation using multiple sequences},
  journal =      {Statistical Science},
  year =     1992,
  volume =   7,
  pages =    {457-511}
}

@Book{Gelman+etal:2003,
  author =   {Andrew Gelman and John B. Carlin and Hal S. Stern and Donald B. Rubin},
  title =    {Bayesian Data Analysis},
  publisher =    {Chapman and Hall / CRC},
  year =     2003,
  address =  {Boca Raton},
  edition =  {2nd}
}

@ARTICLE{Gelman:2004,
  AUTHOR = {Andrew Gelman},
  TITLE = {Parameterization and {B}ayesian {M}odelling},
  YEAR = 2004,
  JOURNAL = JASA,
  VOLUME = 99,
  SECTION = 466,
  PAGES = {537 - 545}
  }

@InCollection{Geweke:1992,
  author =   {J. Geweke},
  title =    {Evaluating the accuracy of sampling-based approaches to calculating posterior moments},
  booktitle =    {Bayesian Statistics 4},
  publisher =    {Clarendon Press},
  year =     1992,
  editor =   {J.M. Bernado and J.O. Berger and A.P. Dawid and A.F.M. Smith},
  address =  {Oxford}
}

@ARTICLE{Geweke+Zhou:1996,
  AUTHOR = {John Geweke and Guofu Zhou},
  TITLE = {Measuring the {P}ricing {E}rror of the {A}rbitrage {P}ricing {T}heory},
  YEAR = 1996,
  JOURNAL = {Rev.Finan.Stud.},
  VOLUME = 9,
  PAGES = {557-587},
  ANNOTE = {use gibbs sampler}
  }

@INBOOK{Ghahramani+Beal:2000,
  AUTHOR = {Z. Ghahramani and M.J. Beal},
  TITLE = {Variational inference for {B}ayesian mixtures of factor analysers},
  YEAR = 2000,
  BOOKTITLE = {Advances in Neural Information Systems 12},
  PUBLISHER = {MIT Press}
  }

@TECHREPORT{Ghahramani+Hinton:1996,
  AUTHOR = {Zoubin Ghahramani and Geoffrey E. Hinton},
  TITLE = {The {EM} {A}lgorithm for {M}ixtures of {F}actor {A}nalysers},
  YEAR = 1996,
  INSTITUTION = {Department of Computer Science, University of Toronto},
  NUMBER = {CRG-TR-96-1}
  }

@ARTICLE{Gilks+Wild:1992,
  AUTHOR = {W.R. Gilks and P. Wild},
  TITLE = {Adaptive rejection sampling for {G}ibbs sampling},
  YEAR = 1992,
  JOURNAL = JRSSC,
  VOLUME = 41,
  SECTION = 2,
  PAGES = {337-348}
}

@ARTICLE{Gilks+etal:1995,
  AUTHOR = {W.R. Gilks and N.G. Best and K.K.C. Tan},
  TITLE = {Adaptive rejection {M}etropolis sampling within {G}ibbs sampling},
  YEAR = 1995,
  JOURNAL = JRSSC,
  VOLUME = 44,
  SECTION = 4,
  PAGES = {455-472}
}

@ARTICLE{Gilmour+etal:1985,
  AUTHOR = {A.R. Gilmour and R.D.Anderson and A.C.Rae},
  TITLE = {The {A}nalysis of {B}inomial {D}ata by a {G}eneralized {L}inear {M}ixed {M}odel},
  YEAR = 1985,
  JOURNAL = {Biometrika},
  VOLUME =  72,
  SECTION = 3,
  PAGES = {593 - 599}
}

@ARTICLE{Glonek+McCullagh:1995,
  AUTHOR = {G.F.V. Glonek and P. McCullagh},
  TITLE = {Multivariate {L}ogistic {M}odels},
  YEAR = 1995,
  JOURNAL = JRSSB,
  VOLUME = 57,
  SECTION = 3,
  PAGES = {553-546}
}

@ARTICLE{Glonek:1996,
  AUTHOR = {G.F.V. Glonek},
  TITLE = {A {C}lass of {R}egression {M}odels for {M}ultivariate {C}ategorical {R}esponses},
  YEAR = 1996,
  JOURNAL = {Biometrika},
  VOLUME =  83,
  SECTION = 1,
  PAGES = {15 - 28}
}

@ARTICLE{Goldstein:1991,
  AUTHOR = {Harvey Goldstein},
  TITLE = {Nonlinear {M}ultilevel {M}odels {W}ith an {A}pplication to {D}iscrete {R}esponse {D}ata},
  YEAR = 1991,
  JOURNAL = {Biometrika},
  VOLUME = 78,
  PAGES = {45-51},
  NOTES = {Source of MQL for GLMMs?}
}

@ARTICLE{Green:1984,
  AUTHOR = {Peter J. Green},
  TITLE = {Iteratively {R}eweighted {L}east {S}quares for {M}aximum {L}ikelihood {E}stimators, and some {R}obust and {R}esistant {A}lternatives},
  YEAR = 1984,
  JOURNAL = JRSSB,
  VOLUME =  46,
  SECTION = 2,
  PAGES = {149 - 192},
  NOTES = {cited by yee as the source of vgams but I can't see why}
}

@InCollection{Green:2003,
  author =   {Peter J. Green},
  title =    {Trans-dimensional {M}arkov chain {M}onte {C}arlo},
  booktitle =    {Highly {S}tructured {S}tochastic {S}ystems},
  pages =    {179-198},
  publisher =    {Oxford University Press},
  year =     2003,
  editor =   {P.J. Green and N. L. Hjort and S. Richardson},
  number =   27,
  series =   {Oxford Statistical Science Series},
  address =  {Oxford},
  annote =   {don't use RJMCMC for messy models, if you only have a few models and have a good-within model sampler}
}

@TECHREPORT{Greene:2001,
  AUTHOR = {William Greene},
  TITLE = {Fixed and {R}andom {E}ffects in {N}onlinear {M}odels},
  YEAR = 2001,
  INSTITUTION = {Department of Economics, New York University}
}

@ARTICLE{Griffin+Steel:2004,
  AUTHOR = {J.E. Griffin and M.F.J. Steel},
  TITLE = {Semiparametric {B}ayesian inference for stochastic frontier models},
  YEAR = 2004,
  JOURNAL = {Journal of Econometrics},
  VOLUME = 123,
  SECTION = 1,
  PAGES = {121-152}
  }

@TECHREPORT{Grilli+Rampichini:2002,
  AUTHOR = {Leonardo Grilli and Carla Rampichini},
  TITLE = {Alternative specifications of bivariate multilevel ordinal response models},
  YEAR = 2002,
  INSTITUTION = {University degli Studi di Firenze},
  ADDRESS = {Firenze}
}

@Article{Grzebyk+etal:2004,
  author =   {Michel Grzebyk and Pascal Wild and Dominique Chouaniere},
  title =    {On identification of multi-factor models with correlated residuals},
  journal =      {Biometrika},
  year =     2004,
  volume =   91,
  number =   1,
  pages =    {141-151}
}

@ARTICLE{Gueorguieva+Agresti:2001,
  AUTHOR = {Ralitza V. Gueorguieva and Alan Agresti},
  TITLE = {A {C}orrelated {P}robit {M}odel for {J}oint {M}odeling of {C}lustered {B}inary and {C}ontinuous {R}esponses},
  YEAR = 2001,
  JOURNAL = JASA,
  VOLUME = 96,
  SECTION = 455,
  PAGES = {1102-1112}
}

@ARTICLE{Gueorguieva:2001,
  AUTHOR = {R. Gueorguieva},
  TITLE = {A multivariate generalized linear mixed model for joint modelling of clustered outcomes in the exponential family},
  YEAR = 2001,
  JOURNAL = {Statistical Modelling},
  VOLUME =  1,
  PAGES = {177 - 193},
  NOTES = {Describes GH - using SAS and MCEM - using OX?}
}

@ARTICLE{Gumru+Elder:2000,
  AUTHOR = {Shiferaw Gumru and John Elder},
  TITLE = {Generalized bivariate count data regression models},
  YEAR = 2000,
  JOURNAL = {Economics Letters},
  VOLUME =  68,
  PAGES = {31 - 36}
}

@ARTICLE{Hall+Wang:2005,
  AUTHOR = {Daniel B. Hall and Lihua Wang},
  TITLE = {Two-component mixtures of generalised lienar mixed effects models for cluster correlated data},
  YEAR = 2005,
  JOURNAL = {Statistical Modelling},
  VOLUME = 5,
  PAGES = {21-37},
  ANNOTE = {EM and NPMLE}
  }

@INBOOK{Hardy+etal:1988,
  AUTHOR = {G.H. Hardy and J.E. Littlewood and G. Pólya},
  TITLE = {Some Theorems Concerning Monotonic Functions},
  BOOKTITLE = {Inequalities},
  EDITION = 2,
  PUBLISHER = {Cambridge University Press},
  ADDRESS = {Cambridge, UK},
  PAGES = {83-84},
  YEAR = 1988
}

@BOOK{Hastie+Tibshirani:1990,
  AUTHOR = {Trevor J. Hastie and Robert J. Tibshirani},
  TITLE = {Genereralized {A}dditive {M}odels},
  YEAR = 1990,
  PUBLISHER = {Chapman and Hall},
  ADDRESS = {New York}
}

@ARTICLE{Heagerty+Zeger:2000,
  AUTHOR = {Patrick J. Heagerty and Scott L. Zeger},
  TITLE = {Marginalized {M}ultilevel {M}odels and {L}ikelihood {I}nference},
  YEAR = 2000,
  JOURNAL = {Statistical Science},
  VOLUME =  15,
  SECTION = 1,
  PAGES = {1 - 26}
}

@ARTICLE{Heidelberger+Welch:1983,
  AUTHOR = {P. Heidelberger and P.D. Welch},
  TITLE = {Simulation run length control in the presence of an initial transient},
  YEAR = 1983,
  JOURNAL = {Opns Res},
  VOLUME = 31,
  PAGES = {1109-44}
}
@ARTICLE{Held+etal:2005,
  AUTHOR = {L. Held and  I. Natario and S. Fenton and H. Rue and N. Becker},
  TITLE = {Towards joint disease mapping},
  JOURNAL = {Statistical Methods in Medical Research},
  YEAR = 2005,
  VOLUME = 14,
  PAGES = {61-82},
  ANNOTE = {This article discusses and extends statistical models to jointly analyse the spatial variation of rates of several diseases with common risk factors. We start with a review of methods for separate analyses of diseases, then move to ecological regression approaches, where the rates from one of the diseases enter as surrogate covariates for exposure. Finally, we propose a general framework for jointly modelling the variation of two or more diseases, some of which share latent spatial fields, but with possibly different risk gradients. In our application, we consider mortality data on oral, oesophagus, larynx and lung cancers for males in Germany, which all share smoking as a common risk factor. Furthermore, the first three cancers are also known to be related to excessive alcohol consumption. An empirical comparison of the different models based on a formal model criterion as well as on the posterior precision of the relative risk estimates strongly suggests that the joint modelling approach is a useful and valuable extension over individual analyses.}
  }

@ARTICLE{Herring+etal:2004,
  TITLE = {Modeling the effects of a bidirectional latent predictor from multivariate latent questionnaire data},
  AUTHOR = {A.H. Herring and D.B. Dunson and N. Dole},
  YEAR = 2004,
  JOURNAL = {Biometrics},
  VOLUME = 60,
  ISSUE = 4,
  PAGES = {926-935}
}

@ARTICLE{Heyde+Morton:1996,
  AUTHOR = {C.C.Heyde and R.Morton},
  TITLE = {Quasi-likelihood and {G}eneralizing the {EM} {A}lgorithm},
  YEAR = 1996,
  JOURNAL = JRSSB,
  VOLUME = 58,
  PART = 2,
  PAGES = {317 - 327}
}

@ARTICLE{Hobert+Casella:1996,
  AUTHOR = {James P. Hobert and George Casella},
  TITLE = {The {E}ffect of {I}mproper {P}riors on {G}ibbs {S}ampling in {H}ierarchical {L}inear {M}ixed {M}odels},
  YEAR = 1996,
  JOURNAL = JASA,
  VOLUME = 91,
  PART = 436,
  PAGES = {1461-1473}
}

@Article{Hogan+Tchernis:2004,
  author =   {Joseph W. Hogan and Rusty Tchernis},
  title =    {Bayesian {F}actor {A}nalysis for {S}patially {C}orrelated {D}ata, {W}ith {A}pplication to {S}ummarizing {A}rea-{L}evel {M}aterial {D}eprivation from {C}ensus {D}ata},
  journal =      JASA,
  year =     2004,
  volume =   99,
  number =   466,
  pages =    {314-324}
}

@ARTICLE{Huber+etal:2004,
  AUTHOR = {Phillippe Huber and Elvezio Ronchetti and Mari-Pia Victoria-Feser},
  TITLE = {Estimation of generalized linear latent variable models},
  YEAR = 2004,
  JOURNAL = JRSSB,
  VOLUME = 66,
  SECTION = 4,
  PAGES = {893-908}
  }

@INBOOK{Ibrahim+Chen:2000,
  AUTHOR = {Joseph G. Ibrahim and Ming-Hui Chen},
  TITLE = {Prior {E}licitation and {V}ariable {S}election for {G}eneralized {L}inear {M}ixed {M}odels},
  YEAR = 2000,
  PAGES = {41 - 53},
  CHAPTER = 3,
  CROSSREF = {Dey+etal:2000}
}

@ARTICLE{Ibrahim+etal:2001,
  AUTHOR = {Joseph G. Ibrahim and Ming-Hui Chen and Stuart R. Lipsitz},
  TITLE = {Missing responses in generalised linear mixed models when the data mechanism is non-ignorable},
  YEAR = 2001,
  JOURNAL = {Biometrika},
  VOLUME = 88,
  PART = 2,
  PAGES = {551 - 564},
  NOTES = {Dont think I kept a copy of this paper}
}

@ARTICLE{Im+Gianola:1988,
  AUTHOR = {S. Im and D. Gianola},
  TITLE = {Mixed {M}odels for {B}inomial {D}ata with an {A}pplication to {L}amb {M}ortality},
  YEAR = 1988,
  JOURNAL = JRSSC,
  VOLUME =  37,
  SECTION = 2,
  PAGES = {196 - 204},
  NOTES = {EM with GH}
}

@TECHREPORT{Imai+vanDyk:2002,
  AUTHOR = {Kosuke Imai and David A. {van Dyk}},
  TITLE = {A {B}ayesian analysis of the multinomial probit model using marginal data augmentation},
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}

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}

@article{Liu+etal:2005,
author = {Liu, Xuan and Wall, Melanie M. and Hodges, James S.},
title = {{Generalized spatial structural equation models}},
journal = {Biostatistics},
volume = {6},
number = {4},
pages = {539-557},
year = {2005},
annote = {It is common in public health research to have high-dimensional, multivariate, spatially referenced data representing summaries of geographic regions. Often, it is desirable to examine relationships among these variables both within and across regions. An existing modeling technique called spatial factor analysis has been used and assumes that a common spatial factor underlies all the variables and causes them to be related to one another. An extension of this technique considers that there may be more than one underlying factor, and that relationships among the underlying latent variables are of primary interest. However, due to the complicated nature of the covariance structure of this type of data, existing methods are not satisfactory. We thus propose a generalized spatial structural equation model. In the first level of the model, we assume that the observed variables are related to particular underlying factors. In the second level of the model, we use the structural equation method to model the relationship among the underlying factors and use parametric spatial distributions on the covariance structure of the underlying factors. We apply the model to county-level cancer mortality and census summary data for Minnesota, including socioeconomic status and access to public utilities.
},
URL = {http://biostatistics.oxfordjournals.org/cgi/content/abstract/6/4/539},
eprint = {http://biostatistics.oxfordjournals.org/cgi/reprint/6/4/539.pdf}
}

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@TechReport{Lopes+West:2002,
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  title =    {Bayesian model assessment in {F}actor {A}nalysis},
  institution =  {ISDS Duke University},
  year =     2002
}

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  }

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}

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  year =     2003,
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  number =   2,
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}

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  NOTES = {This paper studies a self-selection model with discrete and continuous outcomes and a treatment variable. The treatment variable is endogenous to the two outcome variables. The approach of the paper is fully parametric and Bayesian. The Bayes factor is calculated with the Savage-Dickey density ratio and used for model selection. The model is applied to two different micro data sets, the 1987-1988 National Medical Expenditure Survey and the 1996 Medical Expenditure Panel Survey. The paper studies the effect of managed care and fee- for-service type of private insurance on the demand for healthcare. It also compares the effects of private insurance and Medicaid in covering health care expenses of elderly Americans.},
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}

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  author =   {R.M. Neal},
  title =    {Improving asymptotic variance of {MCMC} estimators: nonreversible chains are better},
  institution =  {University of Toronto},
  year =     2004,
  annote = {finite state spaces}
}

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@Article{OBrien+Dunson:2004,
  author =   {S.M. O'Brien and David B. Dunson},
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  number =   3,
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}

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  AUTHOR = {Juni Palmgren and Samili Ripatti},
  TITLE = {Fitting exponential family mixed models},
  YEAR = 2001,
  INSTITUTION = {Mathematical Statistics, Stokholm University}
}

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}

@ARTICLE{Park+etal:2001,
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@Article{Pauler+etal:1999,
  author =   {Donna K. Pauler and Jonathan C. Wakefield and Robert E. Kass},
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@TECHREPORT{Plummer:2001,
  AUTHOR = {Martyn Plummer},
  TITLE = {Prior sensitivity in graphical models},
  YEAR = 2001,
  INSTITUTION = {International Agency for Research on Cancer}
}

@TECHREPORT{Plummer:2002,
  AUTHOR = {Martyn Plummer},
  TITLE = {Some criteria for {B}ayesian Model Choice},
  YEAR = 2002,
  INSTITUTION = {International Agency for Research on Cancer}
}

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@TechReport{Press+Shigemasu:1987,
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  institution =  {University of California, Department of Statistics},
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  address =  {Riverside}
}

@ARTICLE{Quinn:2004,
  AUTHOR = {Kevin M. Quinn},
  TITLE = {Bayesian {F}actor {A}nalysis for {M}ixed {O}rdinal and {C}ontinuous {R}esponses},
  YEAR = 2004,
  JOURNAL = {Political Analysis},
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  }

@ARTICLE{Quintana+etal:1999,
  AUTHOR = {Fernando A. Quintana and Jun S. Liu and Guido E. {del Pino} },
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  JOURNAL = {Compuational Statistics and Data Analysis},
  VOLUME = 29,
  PAGES = {429 - 444}
}

@Manual{R:2004,
     title        = {R: A language and environment for
                     statistical computing},
     author       = {{R Development Core Team}},
     organization = {R Foundation for Statistical Computing},
     address      = {Vienna, Austria},
     year         = 2004,
     note         = {ISBN 3-900051-00-3},
     url          = {http://www.R-project.org}
   }

@Article{Rabe-Hesketh+etal:2001,
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  journal =      {Biometrics},
  year =     2001,
  volume =   57,
  number =   4,
  pages =    {1256-1263}
}

@Article{Raftery+Lewis:1992,
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  year =     1992,
  volume =   7,
  pages =    {493-497}
}

@ARTICLE{Raftery:1996,
  AUTHOR = {Adrian E. Raftery},
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  VOLUME = 83,
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  PAGES = {251 - 266}
}

@ARTICLE{Ramaswamy+etal:1994,
  AUTHOR = {V. RAMASWAMY and E.W. ANDERSON and W.S. DESARBO},
  TITLE = {A DISAGGREGATE NEGATIVE BINOMIAL REGRESSION PROCEDURE FOR COUNT DATA-ANALYSIS},
  NOTES = {Various research areas face the methodological problems presented by nonnegative integer count data drawn from heterogeneous populations. We present a disaggregate negative binomial regression procedure for analysis of count data observed for a heterogeneous sample of cross-sections, possibly over some fixed time periods. This procedure simultaneously pools or groups cross-sections while estimating a separate negative binomial regression model for each group. An E-M algorithm is described within a maximum likelihood framework to estimate the group proportions, the group-specific regression coefficients, and the degree of overdispersion in event rates within each derived group. The proposed procedure is illustrated with count data entailing nonnegative integer counts of purchases (events) for a frequently bought consumer good.},
  PAGES = {405 - 417},
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  YEAR = 1994,
  VOLUME = 40,
  SECTION = 3
}

@InBook{Richardson+Montfort:2000,
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  booktitle =    {Spatial {E}pidemiology: {M}ethods and {A}pplications},
  publisher =    {Oxford University Press},
  year =     2000,
  editor =   {P. Elliott and Jon Wakefield and Nicola Best and David Briggs},
  address =  {Oxford},
  pages = {205-219}
}

@ARTICLE{Richardson+Green:1997,
  AUTHOR = {Sylvia Richardson and Peter J Green},
  TITLE = {On {B}ayesian analysis of mixtures with an unknown number of components (with discussion)},
  YEAR = 1997,
  JOURNAL = JRSSB,
  VOLUME = 59,
  PAGES = {731-792}
}

@ARTICLE{Roos:2003,
  AUTHOR = {B. Roos},
  TITLE = {Poisson approximation of multivariate {P}oisson mixtures},
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  YEAR = 2003,
  VOLUME = 40,
  SECTION = 2
}

@TechReport{Rowe+Press:1998,
  author =   {Daniel B. Rowe and S. James Press},
  title =    {Gibbs sampling and {H}ill {C}limbing in {B}ayesian {F}actor {A}nalysis},
  institution =  {University of California, Department of Statistics},
  year =     1998,
  number =   255,
  address =  {Riverside}
}

@TechReport{Rowe:2000,
  author =   {Daniel B. Rowe},
  title =    {On estimating the mean in {B}ayesian {F}actor {A}nalysis},
  institution =  {California Institute of Technology},
  year =     2000,
  number =   {Social Sciences Working Paper 1096},
  address =  {Pasadena, California}
}

@TechReport{Rowe:2000b,
  author =   {Daniel B. Rowe},
  title =    {Incorporating prior knowledge regarding the mean in {B}ayesian {F}actor {A}nalysis},
  institution =  {California Institute of Technology},
  year =     2000,
  number =   {Social Sciences Working Paper 1097},
  address =  {Pasadena, California}
}

@TechReport{Rowe:2001,
  author =   {Daniel B. Rowe},
  title =    {A model for {B}ayesian {F}actor {A}nalysis with jointly distributed means and loadings},
  institution =  {California Institute of Technology},
  year =     2001,
  number =   {Social Science Working Paper 1108},
  address = {Pasadena, California}
}

@TechReport{Rowe:2001b,
  author =   {Daniel B. Rowe},
  title =    {A {B}ayesian model to incorporate jointly distributed generalized prior information on means and loadings in {F}actor {A}nalysis},
  institution =  {California Institute of Technology},
  year =     2001,
  number =   {Social Science Working Paper 1110},
  address = {Pasadena, California}
}

@Book{Rowe:2002,
  author =   {Daniel B. Rowe},
  title =    {Multivariate {B}ayesian {S}tatistics: models for source separation and signal unmixing},
  publisher =    {Chapman and Hall / CRC},
  year =     2002
}

@ARTICLE{Sahu+Cheng:2003,
  AUTHOR = {S.K. Sahu and R.C.H. Cheng},
  YEAR = 2003,
  TITLE = {A Fast Distance Based Approach for Determining the Number of Components in Mixtures},
  JOURNAL = {The Canadian Journal of Statistics},
  VOLUME = 31,
  PAGES = {3-22}
}

@TECHREPORT{Sahu+Dey:1999,
  AUTHOR = {Sujit K. Sahu and Dipak K. Dey},
  TITLE = {A {C}omparison of {F}railty and {O}ther {M}odels for {B}ivariate {S}urvival {D}ata},
  YEAR = 1999,
  INSTITUTION = {Faculty of Mathematical Studies, University of Southampton},
  ADDRESS = {Southampton}
}

@ARTICLE{Sammel+etal:1997,
  AUTHOR = {Mary Dupuis Sammel and Louise M Ryan and Julie M Leger},
  TITLE = {Latent {V}ariable {M}odels for {M}ixed {D}iscrete and {C}ontinuous {O}utcomes},
  YEAR = 1997,
  JOURNAL = JRSSB,
  VOLUME =  59,
  SECTION = 3,
  PAGES = {667 - 678},
  NOTES = {Describe EM (roughly) and mention GH}
}

@ARTICLE{Santner+Duffy:1986,
  AUTHOR = {Thomas J. Santner and Diane E. Duffy},
  TITLE = {A {N}ote on {A}.{A}lbert and {J}.{A}.{A}nderson's {C}onditions for the {E}xistence of {M}aximum {L}ikelihood {E}stimates in {L}ogistic {R}egression {M}odels},
  YEAR = 1986,
  JOURNAL = {Biometrika},
  VOLUME = 73,
  SECTION = 3,
  PAGES = {755-758},
  NOTES = {Not sure how much sense this makes without the original - Biometrika 71:1-10}
}

@ARTICLE{Schall:1991,
  AUTHOR = {Robert Schall},
  TITLE = {Estimation in generalized linear models with random effects},
  YEAR = 1991,
  JOURNAL = {Biometrika},
  VOLUME = 78,
  SECTION = 4,
  PAGES = {719 - 727}
}

@ARTICLE{Schmid+Held:2004,
  AUTHOR = {V. Schmid and L. Held},
  TITLE = {Bayesian extrapolation of space-time trend in cancer registry data},
  YEAR = 2004,
  JOURNAL = {Biometrics},
  VOLUME = 60,
  PAGES = {1034-1042}
  }

@Article{Schwarz:1978,
  author =   {G. Schwarz},
  title =    {Estimating the dimension of a model},
  journal =      {Ann. Statist.},
  year =     1978,
  volume =   6,
  pages =    {461-464}
}

@ARTICLE{Skinner+etal:2003,
  AUTHOR = {K.R. Skinner and D.C. Montgomery and G.C. Runger},
  TITLE = {Process monitoring for multiple count data using generalized linear model-based control charts},
  PAGES = {1167 - 1180},
  JOURNAL = {Int. J. Prod. Res.},
  YEAR = 2003,
  VOLUME = 41,
  SECTION = 6
}

@ARTICLE{Smith+Croft:2003,
  AUTHOR = {J.Q. Smith and J. Croft},
  TITLE = {Bayesian networks for discrete multivariate data: an algebraic approach to inference},
  NOTES = {In this paper we demonstrate how Grobner bases and other algebraic techniques can be used to explore the geometry of the probability space of Bayesian networks with hidden variables. These techniques employ a parametrisation of Bayesian network by moments rather than conditional probabilities. We show that whilst Grobner bases help to explain the local geometry of these spaces a complimentary analysis, modelling the positivity of probabilities, enhances and completes the geometrical picture. We report some recent geometrical results in this area and discuss a possible general methodology for the analyses of such problems.},
  PAGES = {387 -  402},
  JOURNAL = {J. Multivar. Anal.},
  YEAR = 2003,
  VOLUME = 84,
  SECTION = 2
}

@TechReport{Smith:2004,
  author =   {Brian J. Smith},
  title =    {Bayesian {O}utput {A}nalysis {P}rogram},
  institution =  {College of Public Health, University of Iowa},
  year =     2004,
  annote =  {\url{www.public-health.uiowa.edu/boa/}}
}

@TECHREPORT{Smyth+Jorgensen:2001,
  AUTHOR = {Gordon K. Smyth and Bent Jorgensen},
  TITLE = {Fitting {T}weedie's {C}ompound {P}oisson {M}odel to {I}nsurance {C}laims {D}ata: {D}ispersion {M}odelling},
  YEAR = 2001,
  INSTITUTION = {University of Queensland, Australia}
}

@TECHREPORT{Smyth+Verbyla:1995,
  AUTHOR = {Gordon K. Smyth and Arunas P. Verbyla},
  TITLE = {A conditional likelihood approach to {REML} in {G}eneralized {L}inear {M}odels},
  YEAR = 1995,
  INSTITUTION = {University of Queensland}
}

@ARTICLE{Smyth:2000,
  AUTHOR = {Gordon Smyth},
  TITLE = {Model selection for probabilistic clustering using cross-validated likelihood},
  YEAR = 2000,
  JOURNAL = {Statistics and Computing},
  VOLUME = 10,
  PAGES = {63-72}
}

@ARTICLE{Spiegelhalter+Marshall:1999,
  AUTHOR = {David J. Spiegelhalter and E. Clare Marshall},
  TITLE = {Inference-Robust {I}nstitutional {C}omparisons: A {C}ase {S}tudy of {S}chool {E}xamination {R}esults},
  YEAR = 1999,
  JOURNAL = {Bayesian Statistics},
  VOLUME = 5,
  PAGES = {613-630},
  NOTES = {e.d J.M.Bernado and J.O.Berger and A.P.Dawid and A.F.M.Smith}
}

@TECHREPORT{Spiegelhalter+etal:1996,
  AUTHOR = {D.J. Spiegelhalter and A. Thomas and N.G. Best and W.R. Gilks},
  TITLE = {{BUG}s {E}xamples {V}olume 1, {V}ersion 0.5},
  YEAR = 1996,
  INSTITUTION = {MRC Biostatistics Unit},
  ADDRESS = {Cambridge}
}

@TECHREPORT{Spiegelhalter+etal:1998,
  AUTHOR = {David Spiegelhalter and Andrew Thomas and Nicky Best},
  TITLE = {{WinBUGS} Version 1.1.1 user manual},
  YEAR = 1998,
  INSTITUTION = {{MRC B}iostatistics {U}nit, {C}ambridge}
}

@ARTICLE{Spiegelhalter+etal:2002,
  AUTHOR = {David J. Spiegelhalter and Nicola G. Best and Bradley P. Carlin and Angelika {van der Linde}},
  TITLE = {Bayesian measures of complexity and fit},
  YEAR = 2002,
  JOURNAL = JRSSB,
  VOLUME = 64,
  SECTION = 3,
  PAGES = {583 - 639}
}

@ARTICLE{Stone:1974,
  AUTHOR = {Mervyn Stone},
  TITLE = {Cross-Validatory Choice and Asssessment of Statistical Predictions},
  YEAR = 1974,
  JOURNAL = JRSSB,
  VOLUME = 36,
  SECTION = 2,
  PAGES = {111 - 147}
}

@ARTICLE{Stone:1977,
  AUTHOR = {Mervyn Stone},
  TITLE = {An Asymptotic Equivalence of Choice of Model by Cross-Validation and Akaike's Criterion},
  YEAR = 1977,
  JOURNAL = JRSSB,
  VOLUME = 39,
  SECTION = 1,
  PAGES = {44 - 47}
}

@INBOOK{Sun+etal:2000,
  AUTHOR = {Dongchu Sun and Paul L. Speckman and Robert K. Tsutakawa},
  TITLE = {Random {E}ffects in {G}eneralized {L}inear {M}ixed {M}odels ({GLMMs})},
  YEAR = 2000,
  PAGES = {23 - 39},
  CHAPTER = 2,
  CROSSREF = {Dey+etal:2000}
}

@ARTICLE{Sun+etal:2000,
  AUTHOR = {D. Sun and R.K. Tsutakawa and H. Kim and Z. He},
  TITLE = {Bayesian analysis of mortality rates with disease maps},
  YEAR = 2000,
  JOURNAL = {Statistics in Medicine},
  VOLUME = 19,
  PAGES = {2015-2035}
  }

@ARTICLE{Sundt:2000,
  AUTHOR = {Bjorn Sundt},
  TITLE = {Multivariate {C}ompound {P}oisson {D}istributions and {I}nfinite {D}ivisibility},
  YEAR = 2000,
  JOURNAL = {ASTIN Bulletin},
  VOLUME =  30,
  SECTION = 1,
  PAGES = {57 - 67}
}

@ARTICLE{Sutradhar+Das:1999,
  AUTHOR = {Braejendra C. Sutradhar and Kalyan Das},
  TITLE = {On the efficiency of regression estimators in generalised linear models for longitudinal data},
  YEAR = 1999,
  JOURNAL = {Biometrika},
  VOLUME = 86,
  SECTION = 2,
  PAGES = {459 - 465}
}

@TECHREPORT{Therneau+Atkinson:1997,
  AUTHOR = {T.M. Therneau and E.J. Atkinson},
  TITLE = {An introduction to recursive partitioning using the {RPART} routines},
  YEAR = 1997,
  INSTITUTION = {Mayo Foundation}
}

@ARTICLE{Tsionas:2001,
  AUTHOR = {E.G. Tsionas},
  TITLE = {Bayesian multivariate Poisson regression},
   PAGES = {243 - 255},
  JOURNAL = {Commun. Stat.-Theory Methods},
  YEAR = 2001,
  VOLUME = 30,
  SECTION = 2
}

@ARTICLE{Vehtari+Lampinen:2002,
  AUTHOR = {Aki Vehtari and Jouko Lampinen},
  TITLE = {Bayesian {M}odel {A}ssessment and {C}omparison {U}sing {C}ross-{V}alidation {P}redictive {D}ensities},
  YEAR = 2002,
  JOURNAL = {Neural Computation},
  VOLUME = 14,
  SECTION = 10,
  PAGES = {1-32}
}

@Article{Vicard:2000,
  author =   {Paola Vicard},
  title =    {On the identification of a single-factor model with correlated residuals},
  journal =      {Biometrika},
  year =     2000,
  volume =   87,
  pages =    {199-205}
}

@ARTICLE{Waclawiw+Liang:1993,
  AUTHOR = {Prediction of {R}andom {E}ffects in the {G}eneralized {L}inear {M}odel},
  TITLE = {Myron A. Waclawiw and Kung-Yee Liang},
  YEAR = 1993,
  JOURNAL = JASA,
  VOLUME =  88,
  SECTION = 421,
  PAGES = {171 - 178},
  NOTES = {Two stage model, with estimating equations}
}

@ARTICLE{Wahlin+Paris:2000,
  AUTHOR = {J.F. Wahlin and J. Paris},
  TITLE = {Recursive {F}ormulae for some {B}ivariate {C}ounting {D}istributions {O}btained by the {T}rivariate {R}eduction {M}ethod},
  YEAR = 2000,
  JOURNAL = {ASTIN Bulletin},
  VOLUME =  30,
  SECTION = 1,
  PAGES = {141 - 155}
}

@ARTICLE{Wallace+Freeman,
  TITLE = {Single-factor {A}nalysis by {M}inimum {M}essage {L}ength {E}stimation},
  AUTHOR = {C.S. Wallace and P.R. Freeman},
  YEAR = 1992,
  JOURNAL = JRSSB,
  VOLUME = 54,
  ISSUE = 1,
  PAGES = {195-209}
  }

@ARTICLE{Wang+Wall:2003,
  AUTHOR = {Fujun Wang and Melanie M. Wall},
  TITLE = {Generalized common spatial factor model},
  YEAR =2003,
  JOURNAL = {Biostatistics},
  VOLUME = 4,
  ISSUE = 4,
  PAGES = {569-582}
  }

@ARTICLE{Wedel+etal:1993,
  TITLE = {A LATENT CLASS POISSON REGRESSION-MODEL FOR HETEROGENEOUS COUNT DATA},
  AUTHOR = {M. WEDEL and W.S. DESARBO and J.R.BULT and V. RAMASWAMY},
  JOURNAL = {JOURNAL OF APPLIED ECONOMETRICS},
  VOLUME = 8,
  SECTION = 4,
  PAGES = {397-411},
  YEAR = 1993,
  NOTES = {In this paper an approach is developed that accommodates heterogeneity in Poisson regression models for count data. The model developed assumes that heterogeneity arises from a distribution of both the intercept and the coefficients of the explanatory variables. We assume that the mixing distribution is discrete, resulting in a finite mixture model formulation. An EM algorithm for estimation is described, and the algorithm is applied to data on customer purchases of books offered through direct mail. Our model is compared empirically to a number of other approaches that deal with heterogeneity in Poisson regression models. }
}

@Article{Wedel+etal:2003,
  author =   {Michel Wedel and Ulf Bockenholt and Wagner A. Kamakura},
  title =    {Factor models for multivariate count data},
  journal =      {Journal of Multivariate Analysis},
  year =     2003,
  volume =   87,
  pages =    {356-369}
}

@ARTICLE{Wedel:2002,
  AUTHOR = {M. Wedel},
  TITLE = {Concomitant variables in finite mixture models},
  NOTES = {The standard mixture model, the concomitant variable mixture  model, the mixture regression model and the concomitant  variable mixture regression model all enable simultaneous identification and description of groups of observations. This study reviews the different ways in which dependencies among the variables involved in these models are accommodated. It is demonstrated that the standard and concomitant variable mixture models identify groups of observations and at the same time discriminate them analogous, respectively, to discriminant analysis and logistic regression. While the mixture regression model is shown to have limited use for classifying new observations. An extension of it, called the saturated mixture regression model, is shown to be more useful in that respect.  Advantages of that model in model estimation when missing data are present and as a framework for model selection are also discussed.},
  PAGES = {362 - 375},
  JOURNAL = {Stat. Neerl.},
  YEAR = 2002,
  VOLUME = 56,
  SECTION = 3
}

@INBOOK{West:2003,
  AUTHOR = {Mike West},
  TITLE = {Bayesian {F}actor {R}egression {M}odels in the ``{L}arge p, {S}mall n'' paradigm},
  YEAR = 2003,
  BOOKTITLE = {Bayesian Statistics},
  EDITOR = {J.M. Bernado and M.J. Bayarri and J.O. Berger and A.P. Dawid and D. Heckerman and A.F.M Smith and M. West},
  VOLUME = 7,
  PUBLISHER = {Oxford University Press}
  }

@ARTICLE{Williams+Ggoldstein:1999,
  AUTHOR = {Dyfrig R. Williams and Michael Goldstein},
  TITLE = {Graphical {D}iagnostics for the {B}ayes {L}inear {A}nalysis of {H}ierarchical {L}inear {M}odels with {A}pplications to {E}ducational {D}ata},
  YEAR = 1999,
  JOURNAL = {Bayesian Statistics},
  VOLUME = 6,
  PAGES = {859-867}
}

@TECHREPORT{Winkelmann:1996,
  AUTHOR = {Rainer Winkelmann},
  TITLE = {Count {D}ata {M}odels {W}ith {S}electivity},
  YEAR = 1996,
  INSTITUTION = {University of Canterbury, Christchurch, New Zealand}
}

@ARTICLE{Wood:2000,
  AUTHOR = {Simon N. Wood},
  TITLE = {Modelling and {S}moothing {P}arameter {E}stimation  with {M}ultiple  {Q}uadratic {P}enalties},
  YEAR = 2000,
  JOURNAL = JRSSB,
  VOLUME = 62,
  SECTION = 2,
  PAGES = {413-428}
}

@Article{Yang+Berger:1994,
  author =   {Ruoyong Yang and James O. Berger},
  title =    {Estimation of a {C}ovariance {M}atrix {U}sing the {R}eference {P}rior},
  journal =      {The Annals of Statistics},
  year =     1994,
  volume =   22,
  number =   3,
  pages =    {1195-1211}
}

@Article{Yau+etal:2003,
  author =   {Kelvin K.W. Yau and Andy H. Lee and Angus S.K. Ng},
  title =    {Finite mixture regression model with random effects: application to neonatal hospital length of stay},
  journal =      CSDA,
  year =     2003,
  volume =   41,
  number =   {3 - 4},
  pages =    {359 - 366}
}

@ARTICLE{Yee+Hastie:2003,
  AUTHOR = {Thomas W. Yee and Trevor J. Hastie},
  TITLE = {Reduced-rank vector generalized linear models},
  YEAR = 2003,
  JOURNAL = {Statistical Modelling},
  VOLUME =  3,
  SECTION = 1,
  PAGES = {15 - 41},
}

@ARTICLE{Yee+Wild:1996,
  AUTHOR = {T.W. Yee and C.J. Wild},
  TITLE = {Vector {G}eneralized {A}dditive {M}odels},
  YEAR = 1996,
  JOURNAL = JRSSB,
  VOLUME =  58,
  SECTION = 3,
  PAGES = {481 - 493},
  NOTES = {extends the strengths and weaknesses of GAMS}
}

@ARTICLE{Zeger+Karim:1991,
  AUTHOR = {Scott L. Zeger and M. Rezaul Karim},
  TITLE = {Generalized {L}inear {M}odels with {R}andom {E}ffects; {A} {G}ibbs {S}ampling {A}pproach},
  YEAR = 1991,
  JOURNAL = JASA,
  VOLUME = 86,
  SECTION = 413,
  PAGES = {79 - 86}
}

@ARTICLE{Zeger+etal:1988,
  AUTHOR = {Scott L. Zeger and Kung-Yee Liang and Paul S. Albert},
  TITLE = {Models for {L}ongitudinal {D}ata: {A} {G}eneralized {E}stimating {E}quation {A}pproach},
  YEAR = 1988,
  JOURNAL = {Biometrics},
  VOLUME = 44,
  PAGES = {1049 - 1060}
}

@ARTICLE{Zhang+etal:2004,
  AUTHOR = {Zhihua Zhang and Kap Luk Chang and Yiming Wu and Chibiao Chen},
  TITLE = {Learning a multivariate {G}aussian mixture model with the reversible jump {MCMC} algorithm},
  YEAR = 2004,
  JOURNAL = {Statistics and Computing},
  VOLUME = 14,
  PAGES = {343-355},
  ANNOTE = {split move is ill-posed: many parameters to be proposed yet pos.def must be maintained- all covar matrices have same eigenvector}
  }

@TECHREPORT{Zhao+Kochelman:2000,
  AUTHOR = {Yong Zhao and Kara Maria Kochelman},
  TITLE = {Household Vehicle Ownership by Vehicle Type: Application of a Multivariate Negative Binomial Model},
  YEAR = 2000,
  INSTITUTION = {University of Texas at Austin}
}

@ARTICLE{Zhao+etal:1992,
  AUTHOR = {Lue Ping Zhao and Ross L. Prentice and Steven G. Self},
  TITLE = {Multivariate {M}ean {P}arameter {E}stimation by {U}sing a {P}artly {E}xponential {M}odel},
  YEAR = 1992,
  JOURNAL = JRSSB,
  VOLUME = 54,
  SECTION = 3,
  PAGES = {805-811}
}

@INCOLLECTION{hinde:1982,
  BOOKTITLE = {GLIM 82},
  EDITOR = {R.Gilchrist},
  AUTHOR = {John Hinde},
  TITLE = {Compound poisson regression models},
  YEAR = 1982,
  PAGES = {109 - 121},
  PUBLISHER = {Springer-Verlag},
  ADDRESS = {New York}
}

@ARTICLE{hoeting+etal:1999,
  AUTHOR = {Jennifer Hoeting and David Madigan and Adrian E. Raftery and Chris T. Volinsky},
  TITLE = {Bayesian Model Averaging: A Tutorial},
  YEAR = 1999,
  JOURNAL = {Statistical Science},
  VOLUME = 14,
  SECTION = 4,
  PAGES = {382 - 417}
}

@TECHREPORT{joreskog:2000,
  AUTHOR = {Karl G Joreskog},
  TITLE = {Latent variable scores and their uses},
  YEAR = 2000
}

@ARTICLE{vanDuijn+Bockenholt:1995,
  AUTHOR = {M.A.J. {van Duijn} and U. Bockenholt},
  TITLE = {Mixture models for the analysis of repeated count data},
  JOURNAL = JRSSB,
  YEAR = 1995,
  VOLUME = 44,
  SECTION = 4,
  PAGES = {473-486},
  NOTES = {discrete mixtures of gamma distributions}
}

@TECHREPORT{vounatsou+etal:2001,
  AUTHOR = {P. Vounatsou and T. Smith and A.F.M. Smith },
  TITLE = {Bayesian analysis of two-component mixture distribution applied to estimating malaria attributable fractions},
  YEAR = 2001,
  INSTITUTE = {Swiss Tropical Institute}
}

@ARTICLE{waller+etal:1997,
  AUTHOR = {Lance A. Waller and Bradley P. Carlin and Hong Xia and Alan E. Gelfand},
  TITLE = {Hierarical Spatio-Temporal Mapping of Disease Rates},
  YEAR = 1997,
  JOURNAL = {Jnl.Am.Statist.Ass},
  VOLUME = 92,
  SECTION = 438,
  PAGES = {607-617}
}

@BOOK{Dey+etal:2000,
  EDITOR = {Dipak K. Dey and Sujit K. Ghosh and Bani K Mallick},
  BOOKTITLE = {Generalised linear models: a {B}ayesian perpsective},
  YEAR = 2000,
  PUBLISHER = {Marcel Dekker},
  ADDRESS = {New York}
}

@BOOK{Maydeu-Olivares+McArdle:2005,
  EDITOR = {Albert Maydeu-Olivares and John J. McArdle},
  BOOKTITLE = {Contemporary Advances in Psychometrics},
  YEAR = 2005,
  PUBLISHER = {Erlbaum},
  ADDRESS = {New York}
  }

repository: phewson/mvstats

repo_name: phewson/mvstats


text:
include(FindPackageHandleStandardArgs)
set(${CMAKE_FIND_PACKAGE_NAME}_CONFIG ${CMAKE_CURRENT_LIST_FILE})
find_package_handle_standard_args(@PROJECT_NAME@ CONFIG_MODE)

if(NOT TARGET raxpp::raxpp)
    find_package(rax REQUIRED)
    include("${CMAKE_CURRENT_LIST_DIR}/raxppTargets.cmake")
endif()

repository: pisa-engine/raxpp

license_type: permissive

repo_name: pisa-engine/raxpp

branch_name: refs/heads/master

extension: in


text:
@Book{Siegel:Bender:Bond:2016,
 author    = {Siegel, Melanie and Bender, Emily M. and Bond, Francis},
 title     = {Jacy: {A}n Implemented Grammar of {J}apanese},
 publisher = {CSLI Publications},
 series    = {CSLI Studies in Computational Linguistics},
 year      = {2016},
 month     = nov,
 address   = {Stanford},
 isbn      = {9781684000180},
 url       = {http://web.stanford.edu/group/cslipublications/cslipublications/site/9781684000180.shtml}
}

license: MIT

repository: jomof/jacy

repo_name: jomof/jacy

gha_license_id: NOASSERTION

extension: bib


text:
@article{wu2020evaluating,
  title={Evaluating the impact of long-term exposure to fine particulate matter on mortality among the elderly},
  author={Wu, X and Braun, D and Schwartz, J and Kioumourtzoglou, MA and Dominici, F},
  journal={Science Advances},
  pages={eaba5692},
  year={2020},
  publisher={American Association for the Advancement of Science}
}


text:
SUMMARY = "Desktop search engine and metadata storage system"
HOMEPAGE = "https://wiki.gnome.org/Projects/Tracker"
LICENSE = "GPLv2 & LGPLv2.1"
LIC_FILES_CHKSUM = "file://COPYING;md5=506ab4920510c723c01689e212f41404 \
                    file://COPYING.GPL;md5=ee31012bf90e7b8c108c69f197f3e3a4 \
                    file://COPYING.LGPL;md5=2d5025d4aa3495befef8f17206a5b0a1 \
                    file://src/libtracker-miner/COPYING.LIB;md5=2d5025d4aa3495befef8f17206a5b0a1 \
                    file://src/libtracker-common/COPYING.LIB;md5=2d5025d4aa3495befef8f17206a5b0a1 \
                    file://src/libtracker-data/COPYING.LIB;md5=2d5025d4aa3495befef8f17206a5b0a1 \
                    file://docs/reference/COPYING;md5=f51a5100c17af6bae00735cd791e1fcc"

inherit gettext pkgconfig pythonnative gnomebase vala
SRC_URI += "file://0001-assume-sqlite-built-threadsafe-and-with-fts5.patch "
SRC_URI[archive.md5sum] = "8c4b86386b9b7d2c1a75218af582458e"
SRC_URI[archive.sha256sum] = "b234b7573773b904dc3e885ff5ec44e86b035767cde783bc50d65d12cd72861e"

DEPENDS = "intltool-native libunistring sqlite3 dbus upower networkmanager bash-completion glib-2.0-native libsoup-2.4 libxml2 json-glib"

FILES_${PN} += "\
    ${libdir}/systemd/user/tracker-store.service \
    ${libdir}/tracker-2.0 \
    ${datadir}/glib-2.0/schemas \
    ${datadir}/bash-completion/completions \
    ${datadir}/dbus-1/services \
"

FILES_${PN}-dev += "\
    ${datadir}/vala/vapi \
"
FILES_${PN}-staticdev += "\
    ${libdir}/tracker-2.0/libtracker-data.a \
    ${libdir}/tracker-2.0/libtracker-common.a \
"
INSANE_SKIP_${PN} += "dev-so"

EXTRA_OECONF = "\
    --with-unicode-support=libunistring \
    --enable-minimal \
    --disable-introspection \
    --disable-libstemmer \
    --disable-journal \
    --disable-network-manager \
"

repository: dma/citadel

repo_name: dma/citadel

extension: bb


text:
SUMMARY = "HTTP library with thread-safe connection pooling, file post, and more."
HOMEPAGE = "https://urllib3.readthedocs.io/"
AUTHOR = "Andrey Petrov <andrey.petrov@shazow.net>"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=65715c2eb961313d71b297dd5a04f85e"

SRC_URI = "https://files.pythonhosted.org/packages/ff/44/29655168da441dff66de03952880c6e2d17b252836ff1aa4421fba556424/urllib3-1.25.6.tar.gz"
SRC_URI[md5sum] = "a7504a9fcb7ed4ffa482fe098c80b6d4"
SRC_URI[sha256sum] = "9a107b99a5393caf59c7aa3c1249c16e6879447533d0887f4336dde834c7be86"

S = "${WORKDIR}/urllib3-1.25.6"

RDEPENDS_${PN} = ""

inherit setuptools

repository: engrhamzaaliimran/meta-assistant

repo_name: engrhamzaaliimran/meta-assistant


text:
include(vcpkg_common_functions)

if(VCPKG_TARGET_ARCHITECTURE STREQUAL "x86")
	set(SYSTEM_PLATFORM "32")
	set(SYSTEM_PLATFORM_PATH "x86_32")
elseif(VCPKG_TARGET_ARCHITECTURE STREQUAL "x64")
	set(SYSTEM_PLATFORM "64")
	set(SYSTEM_PLATFORM_PATH "x86_64")
elseif(VCPKG_TARGET_ARCHITECTURE STREQUAL "arm")
	set(SYSTEM_PLATFORM "arm32")
	set(SYSTEM_PLATFORM_PATH "arm_32")
elseif(VCPKG_TARGET_ARCHITECTURE STREQUAL "arm64")
	set(SYSTEM_PLATFORM "arm64")
	set(SYSTEM_PLATFORM_PATH "arm_64")
else()
    message(FATAL_ERROR "Unsupported architecture: ${VCPKG_TARGET_ARCHITECTURE}")
endif()

if(VCPKG_LIBRARY_LINKAGE STREQUAL "static")
	set(GENERATE_STATIC_LIBRARIES "True")
elseif(VCPKG_LIBRARY_LINKAGE STREQUAL "dynamic")
    set(GENERATE_STATIC_LIBRARIES "False")
endif()

if("${VCPKG_CMAKE_SYSTEM_NAME}" STREQUAL "" OR VCPKG_CMAKE_SYSTEM_NAME STREQUAL "WindowsStore")
	if(VCPKG_TARGET_ARCHITECTURE STREQUAL "x86")
		set(MSBUILD_PLATFORM "Win32")
	elseif(VCPKG_TARGET_ARCHITECTURE STREQUAL "x64")
		set(MSBUILD_PLATFORM "x64")
	elseif(VCPKG_CMAKE_SYSTEM_NAME STREQUAL "WindowsStore")
		if(VCPKG_TARGET_ARCHITECTURE STREQUAL "arm")
			set(MSBUILD_PLATFORM "ARM")
		elseif(VCPKG_TARGET_ARCHITECTURE STREQUAL "arm64")
			set(MSBUILD_PLATFORM "ARM64")
		else()
    		message(FATAL_ERROR "Unsupported UWP architecture: ${VCPKG_TARGET_ARCHITECTURE}")
		endif()
	else()
    	message(FATAL_ERROR "Unsupported Windows architecture: ${VCPKG_TARGET_ARCHITECTURE}")
	endif()

	if(VCPKG_PLATFORM_TOOLSET STREQUAL "v140")
		set(MSVC_VERSION "14")
		set(TOOLSET_VERSION "140")
	elseif(VCPKG_PLATFORM_TOOLSET STREQUAL "v141")
		set(MSVC_VERSION "15")
		set(TOOLSET_VERSION "141")
	elseif(VCPKG_PLATFORM_TOOLSET STREQUAL "v142")
		set(MSVC_VERSION "16")
		set(TOOLSET_VERSION "142")
	else()
		message(FATAL_ERROR "Unsupported platform toolset.")
	endif()

	set(FLOAT_POINT_PRECISE_MATH "False")
	set(BUILD_SNIPPETS "False")
	set(BUILD_PUBLIC_SAMPLES "False")

	if("${VCPKG_CMAKE_SYSTEM_NAME}" STREQUAL "")
		set(SYSTEM "win")
		if(VCPKG_CRT_LINKAGE STREQUAL "dynamic")
			set(USE_STATIC_WINCRT "False")
			set(RUNTIME_LIBRARY_LINKAGE "md")
		elseif(VCPKG_CRT_LINKAGE STREQUAL "static")
			set(USE_STATIC_WINCRT "True")
			set(RUNTIME_LIBRARY_LINKAGE "mt")
		endif()
		set(USE_DEBUG_CRT "True")
		set(COMPILER "vc${MSVC_VERSION}${SYSTEM}${SYSTEM_PLATFORM}")
		set(PRESET_FILE ${COMPILER}-${RUNTIME_LIBRARY_LINKAGE}-${VCPKG_LIBRARY_LINKAGE})
		set(BUILD_PATH "${SYSTEM}.${SYSTEM_PLATFORM_PATH}.vc${TOOLSET_VERSION}.${RUNTIME_LIBRARY_LINKAGE}")
	elseif(VCPKG_CMAKE_SYSTEM_NAME STREQUAL "WindowsStore")
		set(SYSTEM "uwp")
		set(USE_STATIC_WINCRT "False")
		set(USE_DEBUG_CRT "False")
		set(COMPILER "vc${MSVC_VERSION}${SYSTEM}${SYSTEM_PLATFORM}")
		set(PRESET_FILE ${COMPILER}-${VCPKG_LIBRARY_LINKAGE})
		set(BUILD_PATH "${SYSTEM}.${SYSTEM_PLATFORM_PATH}.vc${TOOLSET_VERSION}")
	endif()
else()
	message(FATAL_ERROR "Unsupported platform: ${VCPKG_CMAKE_SYSTEM_NAME}")
endif()

vcpkg_from_github(
    OUT_SOURCE_PATH SOURCE_PATH
    REPO NVIDIAGameWorks/PhysX
    REF ae80dede0546d652040ae6260a810e53e20a06fa
    SHA512 f3a690039cf39fe2db9a728b82af0d39eaa02340a853bdad4b5152d63532367eb24fc7033a614882168049b80d803b6225fc60ed2900a9d0deab847f220540be
    HEAD_REF master
	PATCHES
		msvc_142_bug_workaround.patch
		vs16_3_typeinfo_header_fix.patch
)

file(REMOVE ${SOURCE_PATH}/physx/buildtools/presets/public/${PRESET_FILE}.xml)
configure_file(${CMAKE_CURRENT_LIST_DIR}/preset.xml.in ${SOURCE_PATH}/physx/buildtools/presets/public/${PRESET_FILE}.xml)

vcpkg_find_acquire_program(PYTHON3)
get_filename_component(PYTHON3_DIR ${PYTHON3} DIRECTORY)
vcpkg_add_to_path(${PYTHON3_DIR})

get_filename_component(CMAKE_DIR ${CMAKE_COMMAND} DIRECTORY)
# If cmake is not installed then adding it to the end of the path
# will allow generate_projects.bat to find the cmake used by vcpkg.
vcpkg_add_to_path(${CMAKE_DIR})

vcpkg_execute_required_process(
	COMMAND ${SOURCE_PATH}/physx/generate_projects.bat ${PRESET_FILE}
	WORKING_DIRECTORY ${SOURCE_PATH}/physx
	LOGNAME build-${TARGET_TRIPLET}
)

set(RELEASE_CONFIGURATION "release")
set(DEBUG_CONFIGURATION "debug")

vcpkg_build_msbuild(
  PROJECT_PATH ${SOURCE_PATH}/physx/compiler/${COMPILER}/PhysXSDK.sln
	RELEASE_CONFIGURATION ${RELEASE_CONFIGURATION}
	DEBUG_CONFIGURATION ${DEBUG_CONFIGURATION}
    PLATFORM ${MSBUILD_PLATFORM}
)

file(INSTALL ${SOURCE_PATH}/physx/include/ DESTINATION ${CURRENT_PACKAGES_DIR}/include/${PORT}/)
file(INSTALL ${SOURCE_PATH}/pxshared/include/ DESTINATION ${CURRENT_PACKAGES_DIR}/include/${PORT}/)

if(VCPKG_LIBRARY_LINKAGE STREQUAL dynamic)
	file(GLOB RELEASE_BINS ${SOURCE_PATH}/physx/bin/${BUILD_PATH}/${RELEASE_CONFIGURATION}/*.dll)
	file(INSTALL ${RELEASE_BINS} DESTINATION ${CURRENT_PACKAGES_DIR}/bin)

	file(GLOB DEBUG_BINS ${SOURCE_PATH}/physx/bin/${BUILD_PATH}/${DEBUG_CONFIGURATION}/*.dll)
	file(INSTALL ${DEBUG_BINS} DESTINATION ${CURRENT_PACKAGES_DIR}/debug/bin)

	vcpkg_copy_pdbs()
endif()

file(
	GLOB
	RELEASE_LIBS
		${SOURCE_PATH}/physx/bin/${BUILD_PATH}/${RELEASE_CONFIGURATION}/*.lib
		${SOURCE_PATH}/physx/bin/${BUILD_PATH}/${RELEASE_CONFIGURATION}/*.pdb
		${SOURCE_PATH}/physx/compiler/${COMPILER}/sdk_source_bin/${RELEASE_CONFIGURATION}/*.pdb
)
file(INSTALL ${RELEASE_LIBS} DESTINATION ${CURRENT_PACKAGES_DIR}/lib)

file(
	GLOB
	DEBUG_LIBS
	${SOURCE_PATH}/physx/bin/${BUILD_PATH}/${DEBUG_CONFIGURATION}/*.lib
	${SOURCE_PATH}/physx/bin/${BUILD_PATH}/${DEBUG_CONFIGURATION}/*.pdb
	${SOURCE_PATH}/physx/compiler/${COMPILER}/sdk_source_bin/${DEBUG_CONFIGURATION}/*.pdb
)
file(INSTALL ${DEBUG_LIBS} DESTINATION ${CURRENT_PACKAGES_DIR}/debug/lib)

file(INSTALL ${SOURCE_PATH}/README.md DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)

repository: JackBoos/vcpkg

repo_name: JackBoos/vcpkg

extension: cmake


text:
require cacao-native.inc

PR = "r0"

SRC_URI = "http://www.complang.tuwien.ac.at/cacaojvm/download/cacao-${PV}/cacao-${PV}.tar.bz2"

do_compile_prepend() {

	install -d ${S}/src/classes/classes/java
	install -d ${S}/src/classes/classes/gnu/java
	install -d ${S}/src/classes/classes/sun
}

SRC_URI[md5sum] = "db93ab31c6d1b7f1e213771bb81bde58"
SRC_URI[sha256sum] = "1ea5bd257f755ffcae2c7a1935c37147c7392478922410e0870361eea08b6c27"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD