text:
@article{Adachi1983,
 author = {Adachi, Shizuko},
 title = {Spreading width of gamow-teller resonances in 208Bi },
 journal = {Physics Letters B },
 year = {1983},
 number = {1},
 volume = {125},
 pages = {5--8},
 owner = {Thinkpad},
 timestamp = {2014.04.16}
}

@article{Agrawal2003,
 author = {Agrawal, B. K. and Shlomo, S. and Kim Au, V.},
 title = {Nuclear matter incompressibility coefficient in relativistic and nonrelativistic microscopic models},
 journal = {Phys. Rev. C},
 publisher = {American Physical Society},
 year = {2003},
 month = {Sep},
 volume = {68},
 pages = {031304},
 doi = {10.1103/PhysRevC.68.031304},
 issue = {3},
 numpages = {5}
}

@article{Auerbach:1984,
 author = {Auerbach, N. and Klein, A.},
 title = {Structure of isovector spin excitations in nuclei},
 journal = {Phys. Rev. C},
 year = {1984},
 volume = {30},
 pages = {1032--1043}
}

@article{Avignone2008,
 author = {Avignone, Frank T. and Elliott, Steven R. and Engel, Jonathan},
 title = {Double beta decay, Majorana neutrinos, and neutrino mass},
 journal = {Rev. Mod. Phys.},
 publisher = {American Physical Society},
 year = {2008},
 month = {Apr},
 volume = {80},
 pages = {481--516},
 doi = {10.1103/RevModPhys.80.481},
 issue = {2},
 numpages = {0},
 owner = {Thinkpad},
 timestamp = {2014.06.16}
}

@article{Bai2009,
 author = {Bai, C L and Sagawa, H and Zhang, H Q and Zhang, X Z and Col\`{o}, G and Xu, F R},
 title = {Effect of tensor correlations on Gamow-Teller states in 90Zr and 208Pb},
 journal = {Phys. Lett. B},
 year = {2009},
 month = {May},
 number = {1},
 volume = {675},
 pages = {28},
 doi = {10.1016/j.physletb.2009.03.077},
 abstract = {The tensor terms of the Skyrme effective interaction are included in the self-consistent Hartree–Fock plus Random Phase Approximation (HF + RPA) model. The Gamow–Teller (GT) strength function of 90Zr and 208Pb are calculated with and without the tensor terms. The main peaks are moved downwards by about 2 MeV when including the tensor contribution. About 10% of the non-energy weighted sum rule is shifted to the excitation energy region above 30 MeV by the RPA tensor correlations. The contribution of the tensor terms to the energy weighted sum rule is given analytically, and compared to the outcome of RPA.},
 file = {Bai2009Phys.Lett.B28.pdf:Bai2009Phys.Lett.B28.pdf:PDF},
 owner = {xiaopigliang},
 timestamp = {2010.08.17}
}

@article{Bai2013,
 author = {Bai, C. L. and Sagawa, H. and Sasano, M. and Uesaka, T. and Hagino, K. and Zhang, H. Q. and Zhang, X. Z. and Xu, F. R.},
 title = {Role of pairing in GamowâTeller states in nuclei },
 journal = {Physics Letters B },
 year = {2013},
 number = {1â3},
 volume = {719},
 pages = {116--120},
 doi = {http://dx.doi.org/10.1016/j.physletb.2012.12.060},
 owner = {Yifei Niu},
 timestamp = {2016.05.23}
}

@article{Bai2014,
 author = {Bai, C. L. and Sagawa, H. and Col\`o, G. and Fujita, Y. and Zhang, H. Q. and Zhang, X. Z. and Xu, F. R.},
 title = {Low-energy collective Gamow-Teller states and isoscalar pairing interaction},
 journal = {Phys. Rev. C},
 publisher = {American Physical Society},
 year = {2014},
 month = {Nov},
 volume = {90},
 pages = {054335},
 doi = {10.1103/PhysRevC.90.054335},
 issue = {5},
 numpages = {12},
 owner = {Yifei Niu},
 timestamp = {2016.05.23}
}

@article{Litvinova_2009,
 author = {Litvinova, E. and Loens, H. P. and Langanke, K. and Martínez-Pinedo, G. and Rauscher, T. and Ring, P. and Thielemann, F. -K. and Tselyaev, V.},
 title = {Low-lying dipole response in the relativistic quasiparticle time blocking approximation and its influence on neutron capture cross sections},
 journal = {Nuclear Physics A},
 publisher = {Elsevier BV},
 year = {2009},
 month = {may},
 number = {1-4},
 volume = {823},
 pages = {26--37},
 url = {https://doi.org/10.1016%2Fj.nuclphysa.2009.03.009},
 doi = {10.1016/j.nuclphysa.2009.03.009}
}

@article{Mumpower2016,
 author = {Mumpower, M. R. and Surman, R. and McLaughlin, G. C. and Aprahamian, A.},
 title = {The impact of individual nuclear properties onr-process nucleosynthesis},
 journal = {Prog. Part. Nucl. Phys.},
 publisher = {Elsevier {BV}},
 year = {2016},
 month = {January},
 volume = {86},
 pages = {86--126},
 url = {https://doi.org/10.1016/j.ppnp.2015.09.001},
 doi = {10.1016/j.ppnp.2015.09.001}
}

@article{Niu_2009,
 author = {Niu, Y. F. and Paar, N. and Vretenar, D. and Meng, J.},
 title = {Low-energy monopole and dipole response in nuclei at finite temperature},
 journal = {Physics Letters B},
 publisher = {Elsevier BV},
 year = {2009},
 month = {nov},
 number = {4},
 volume = {681},
 pages = {315--319},
 url = {https://doi.org/10.1016%2Fj.physletb.2009.10.046},
 doi = {10.1016/j.physletb.2009.10.046}
}


text:
inherit ti-pdk

require recipes-bsp/mmap-lld/mmap-lld.inc

PR = "${INC_PR}.0"

PACKAGE_ARCH = "${MACHINE_ARCH}"

# HTML doc link params
PDK_COMP_LINK_TEXT = "MMAP LLD"

license: MIT

repository: bjornwilliam/meta-ti

license_type: permissive

repo_name: bjornwilliam/meta-ti

branch_name: refs/heads/master

gha_license_id: MIT

extension: bb


text:
require xorg-lib-common.inc
DEPENDS += "xproto virtual/libx11"
PR = "${INC_PR}.0"

SRC_URI[archive.md5sum] = "685cb20e7a6165bc010972f1183addbd"
SRC_URI[archive.sha256sum] = "5ccb9683b8be76edfceab4bf006e1cce9018e0d3dea5e54aa72e82798213fead"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD


text:
require intltool_${PV}.bb

inherit native

export PERL = "/usr/bin/env perl"
SRC_URI_append = " file://intltool-nowarn.patch;patch=1"

repository: demsey/openembedded

repo_name: demsey/openembedded


text:
#
# This file is the python-webserver-init recipe.
#

SUMMARY = "Simple python-webserver-init application"
SECTION = "PETALINUX/apps"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://${COMMON_LICENSE_DIR}/MIT;md5=0835ade698e0bcf8506ecda2f7b4f302"

SRC_URI = "file://python-webserver-init \
		  "

S = "${WORKDIR}"

FILESEXTRAPATHS_prepend := "${THISDIR}/files:"

inherit update-rc.d

INITSCRIPT_NAME = "python-webserver-init"
INITSCRIPT_PARAMS = "start 99 S ."

do_install() {
    install -d ${D}${sysconfdir}/init.d
    install -m 0755 ${S}/python-webserver-init ${D}${sysconfdir}/init.d/python-webserver-init
}

FILES_${PN} += "${sysconfdir}/*"

repository: ubfx/meta-avnet

repo_name: ubfx/meta-avnet


text:
@article{Harlander:2009mn,
      author         = "Harlander, Robert V. and Mihaila, Luminita and
                        Steinhauser, Matthias",
      title          = "{The SUSY-QCD beta function to three loops}",
      journal        = "Eur. Phys. J.",
      volume         = "C63",
      year           = "2009",
      pages          = "383-390",
      doi            = "10.1140/epjc/s10052-009-1109-9",
      eprint         = "0905.4807",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "SFB-CPP-09-36, TTP09-13, WUB-09-02",
      SLACcitation   = "%%CITATION = ARXIV:0905.4807;%%"
}

@article{Ferreira:1996ug,
      author         = "Ferreira, P. M. and Jack, I. and Jones, D. R. T.",
      title          = "{The Three loop SSM beta functions}",
      journal        = "Phys. Lett.",
      volume         = "B387",
      year           = "1996",
      pages          = "80-86",
      doi            = "10.1016/0370-2693(96)01005-2",
      eprint         = "hep-ph/9605440",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "LTH-372",
      SLACcitation   = "%%CITATION = HEP-PH/9605440;%%"
}

@article{Chowdhury:2015yja,
      author         = "Chowdhury, Debtosh and Eberhardt, Otto",
      title          = "{Global fits of the two-loop renormalized
                        Two-Higgs-Doublet model with soft Z$_{2}$ breaking}",
      journal        = "JHEP",
      volume         = "11",
      year           = "2015",
      pages          = "052",
      doi            = "10.1007/JHEP11(2015)052",
      eprint         = "1503.08216",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1503.08216;%%"
}

@article{Mihaila:2012fm,
      author         = "Mihaila, Luminita N. and Salomon, Jens and Steinhauser,
                        Matthias",
      title          = "{Gauge Coupling Beta Functions in the Standard Model to
                        Three Loops}",
      journal        = "Phys. Rev. Lett.",
      volume         = "108",
      year           = "2012",
      pages          = "151602",
      doi            = "10.1103/PhysRevLett.108.151602",
      eprint         = "1201.5868",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "SFB-CPP-12-04, TTP12-03",
      SLACcitation   = "%%CITATION = ARXIV:1201.5868;%%"
}

@article{Mihaila:2012pz,
      author         = "Mihaila, Luminita N. and Salomon, Jens and Steinhauser,
                        Matthias",
      title          = "{Renormalization constants and beta functions for the
                        gauge couplings of the Standard Model to three-loop
                        order}",
      journal        = "Phys. Rev.",
      volume         = "D86",
      year           = "2012",
      pages          = "096008",
      doi            = "10.1103/PhysRevD.86.096008",
      eprint         = "1208.3357",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "SFB-CPP-12-61, TTP12-30",
      SLACcitation   = "%%CITATION = ARXIV:1208.3357;%%"
}

@article{Bednyakov:2012rb,
      author         = "Bednyakov, A. V. and Pikelner, A. F. and Velizhanin, V.
                        N.",
      title          = "{Anomalous dimensions of gauge fields and gauge coupling
                        beta-functions in the Standard Model at three loops}",
      journal        = "JHEP",
      volume         = "01",
      year           = "2013",
      pages          = "017",
      doi            = "10.1007/JHEP01(2013)017",
      eprint         = "1210.6873",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1210.6873;%%"
}

@article{Chetyrkin:2012rz,
      author         = "Chetyrkin, K. G. and Zoller, M. F.",
      title          = "{Three-loop $\beta$-functions for top-Yukawa and the Higgs
                        self-interaction in the Standard Model}",
      journal        = "JHEP",
      volume         = "06",
      year           = "2012",
      pages          = "033",
      doi            = "10.1007/JHEP06(2012)033",
      eprint         = "1205.2892",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "SFB-CPP-12-23, TTP12-012",
      SLACcitation   = "%%CITATION = ARXIV:1205.2892;%%"
}

@article{Bednyakov:2012en,
      author         = "Bednyakov, A. V. and Pikelner, A. F. and Velizhanin, V.
                        N.",
      title          = "{Yukawa coupling beta-functions in the Standard Model at
                        three loops}",
      journal        = "Phys. Lett.",
      volume         = "B722",
      year           = "2013",
      pages          = "336-340",
      doi            = "10.1016/j.physletb.2013.04.038",
      eprint         = "1212.6829",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1212.6829;%%"
}

@article{Bednyakov:2014pia,
      author         = "Bednyakov, A. V. and Pikelner, A. F. and Velizhanin, V.
                        N.",
      title          = "{Three-loop SM beta-functions for matrix Yukawa
                        couplings}",
      journal        = "Phys. Lett.",
      volume         = "B737",
      year           = "2014",
      pages          = "129-134",
      doi            = "10.1016/j.physletb.2014.08.049",
      eprint         = "1406.7171",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "HU-MATHEMATIK-2014-17, HU-EP-14-27",
      SLACcitation   = "%%CITATION = ARXIV:1406.7171;%%"
}

@article{Chetyrkin:2013wya,
      author         = "Chetyrkin, K. G. and Zoller, M. F.",
      title          = "{$\beta$-function for the Higgs self-interaction in the
                        Standard Model at three-loop level}",
      journal        = "JHEP",
      volume         = "04",
      year           = "2013",
      pages          = "091",
      doi            = "10.1007/JHEP04(2013)091, 10.1007/JHEP09(2013)155",
      note           = "[Erratum: JHEP09,155(2013)]",
      eprint         = "1303.2890",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "TTP13-008, SFB-CPP-13-19",
      SLACcitation   = "%%CITATION = ARXIV:1303.2890;%%"
}

@article{Bednyakov:2013eba,
      author         = "Bednyakov, A. V. and Pikelner, A. F. and Velizhanin, V.
                        N.",
      title          = "{Higgs self-coupling beta-function in the Standard Model
                        at three loops}",
      journal        = "Nucl. Phys.",
      volume         = "B875",
      year           = "2013",
      pages          = "552-565",
      doi            = "10.1016/j.nuclphysb.2013.07.015",
      eprint         = "1303.4364",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1303.4364;%%"
}

@article{Bednyakov:2013cpa,
      author         = "Bednyakov, A. V. and Pikelner, A. F. and Velizhanin, V.
                        N.",
      title          = "{Three-loop Higgs self-coupling beta-function in the
                        Standard Model with complex Yukawa matrices}",
      journal        = "Nucl. Phys.",
      volume         = "B879",
      year           = "2014",
      pages          = "256-267",
      doi            = "10.1016/j.nuclphysb.2013.12.012",
      eprint         = "1310.3806",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "HU-MATHEMATIK-2013-20, HU-EP-13-53",
      SLACcitation   = "%%CITATION = ARXIV:1310.3806;%%"
}

@article{Lyonnet:2016xiz,
      author         = "Lyonnet, Florian and Schienbein, Ingo",
      title          = "{PyR@TE 2: A Python tool for computing RGEs at two-loop}",
      journal        = "Comput. Phys. Commun.",
      volume         = "213",
      year           = "2017",
      pages          = "181-196",
      doi            = "10.1016/j.cpc.2016.12.003",
      eprint         = "1608.07274",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1608.07274;%%"
}

@article{Staub:2013tta,
      author         = "Staub, Florian",
      title          = "{SARAH 4 : A tool for (not only SUSY) model builders}",
      journal        = "Comput. Phys. Commun.",
      volume         = "185",
      year           = "2014",
      pages          = "1773-1790",
      doi            = "10.1016/j.cpc.2014.02.018",
      eprint         = "1309.7223",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "BONN-TH-2013-17",
      SLACcitation   = "%%CITATION = ARXIV:1309.7223;%%"
}

@article{Djouadi:2002ze,
      author         = "Djouadi, Abdelhak and Kneur, Jean-Loic and Moultaka,
                        Gilbert",
      title          = "{SuSpect: A Fortran code for the supersymmetric and Higgs
                        particle spectrum in the MSSM}",
      journal        = "Comput. Phys. Commun.",
      volume         = "176",
      year           = "2007",
      pages          = "426-455",
      doi            = "10.1016/j.cpc.2006.11.009",
      eprint         = "hep-ph/0211331",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "PM-02-39, CERN-TH-2002-325",
      SLACcitation   = "%%CITATION = HEP-PH/0211331;%%"
}

@article{Athron:2017fvs,
      author         = "Athron, Peter and Bach, Markus and Harries, Dylan and
                        Kwasnitza, Thomas and Park, Jae-hyeon and Stöckinger,
                        Dominik and Voigt, Alexander and Ziebell, Jobst",
      title          = "{FlexibleSUSY 2.0: Extensions to investigate the
                        phenomenology of SUSY and non-SUSY models}",
      journal        = "Comput. Phys. Commun.",
      volume         = "230",
      year           = "2018",
      pages          = "145-217",
      doi            = "10.1016/j.cpc.2018.04.016",
      eprint         = "1710.03760",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "COEPP-MN-17-16, CoEPP-MN-17-16, KIAS-Q17043, TTK-17-31",
      SLACcitation   = "%%CITATION = ARXIV:1710.03760;%%"
}

@article{Athron:2014yba,
      author         = "Athron, Peter and Park, Jae-hyeon and Stöckinger,
                        Dominik and Voigt, Alexander",
      title          = "{FlexibleSUSY—A spectrum generator generator for
                        supersymmetric models}",
      journal        = "Comput. Phys. Commun.",
      volume         = "190",
      year           = "2015",
      pages          = "139-172",
      doi            = "10.1016/j.cpc.2014.12.020",
      eprint         = "1406.2319",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "FTUV-14-3904, IFIC-14-40",
      SLACcitation   = "%%CITATION = ARXIV:1406.2319;%%"
}

@article{Porod:2003um,
      author         = "Porod, Werner",
      title          = "{SPheno, a program for calculating supersymmetric
                        spectra, SUSY particle decays and SUSY particle production
                        at e+ e- colliders}",
      journal        = "Comput. Phys. Commun.",
      volume         = "153",
      year           = "2003",
      pages          = "275-315",
      doi            = "10.1016/S0010-4655(03)00222-4",
      eprint         = "hep-ph/0301101",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "ZU-TH-01-03",
      SLACcitation   = "%%CITATION = HEP-PH/0301101;%%"
}

@article{Porod:2011nf,
      author         = "Porod, W. and Staub, F.",
      title          = "{SPheno 3.1: Extensions including flavour, CP-phases and
                        models beyond the MSSM}",
      journal        = "Comput. Phys. Commun.",
      volume         = "183",
      year           = "2012",
      pages          = "2458-2469",
      doi            = "10.1016/j.cpc.2012.05.021",
      eprint         = "1104.1573",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1104.1573;%%"
}

@article{Allanach:2001kg,
      author         = "Allanach, B. C.",
      title          = "{SOFTSUSY: a program for calculating supersymmetric
                        spectra}",
      journal        = "Comput. Phys. Commun.",
      volume         = "143",
      year           = "2002",
      pages          = "305-331",
      doi            = "10.1016/S0010-4655(01)00460-X",
      eprint         = "hep-ph/0104145",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "CERN-TH-2001-102",
      SLACcitation   = "%%CITATION = HEP-PH/0104145;%%"
}

@article{Kniehl:2016enc,
      author         = "Kniehl, Bernd A. and Pikelner, Andrey F. and Veretin,
                        Oleg L.",
      title          = "{mr: a C++ library for the matching and running of the
                        Standard Model parameters}",
      journal        = "Comput. Phys. Commun.",
      volume         = "206",
      year           = "2016",
      pages          = "84-96",
      doi            = "10.1016/j.cpc.2016.04.017",
      eprint         = "1601.08143",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "DESY-16-019",
      SLACcitation   = "%%CITATION = ARXIV:1601.08143;%%"
}

@article{Martin:2019lqd,
      author         = "Martin, Stephen P. and Robertson, David G.",
      title          = "{Standard model parameters in the tadpole-free pure
                        $\overline{\rm{MS}}$ scheme}",
      journal        = "Phys. Rev.",
      volume         = "D100",
      year           = "2019",
      number         = "7",
      pages          = "073004",
      doi            = "10.1103/PhysRevD.100.073004",
      eprint         = "1907.02500",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      SLACcitation   = "%%CITATION = ARXIV:1907.02500;%%"
}

@article{Chetyrkin:2000yt,
      author         = "Chetyrkin, K. G. and K{\"u}hn, Johann H. and Steinhauser, M.",
      title          = "{RunDec: A Mathematica package for running and decoupling
                        of the strong coupling and quark masses}",
      journal        = "Comput. Phys. Commun.",
      volume         = "133",
      year           = "2000",
      pages          = "43-65",
      doi            = "10.1016/S0010-4655(00)00155-7",
      eprint         = "hep-ph/0004189",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "DESY-00-034, TTP-00-05",
      SLACcitation   = "%%CITATION = HEP-PH/0004189;%%"
}

@article{Schmidt:2012az,
      author         = "Schmidt, Barbara and Steinhauser, Matthias",
      title          = "{CRunDec: a C++ package for running and decoupling of the
                        strong coupling and quark masses}",
      journal        = "Comput. Phys. Commun.",
      volume         = "183",
      year           = "2012",
      pages          = "1845-1848",
      doi            = "10.1016/j.cpc.2012.03.023",
      eprint         = "1201.6149",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "SFB-CPP-12-03, TTP12-02",
      SLACcitation   = "%%CITATION = ARXIV:1201.6149;%%"
}

@article{Poole:2019txl,
      author         = "Poole, C. and Thomsen, A. E.",
      title          = "{Weyl Consistency Conditions and $\gamma_5$}",
      journal        = "Phys. Rev. Lett.",
      volume         = "123",
      year           = "2019",
      number         = "4",
      pages          = "041602",
      doi            = "10.1103/PhysRevLett.123.041602",
      eprint         = "1901.02749",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-th",
      SLACcitation   = "%%CITATION = ARXIV:1901.02749;%%"
}

@article{Herren:2017osy,
      author         = "Herren, Florian and Steinhauser, Matthias",
      title          = "{Version 3 of RunDec and CRunDec}",
      journal        = "Comput. Phys. Commun.",
      volume         = "224",
      year           = "2018",
      pages          = "333-345",
      doi            = "10.1016/j.cpc.2017.11.014",
      eprint         = "1703.03751",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "TTP17-011",
      SLACcitation   = "%%CITATION = ARXIV:1703.03751;%%"
}

@article{Davies:2019onf,
      author         = "Davies, Joshua and Herren, Florian and Poole, Colin and
                        Steinhauser, Matthias and Thomsen, Anders Eller",
      title          = "{Gauge coupling beta functions to four-loop order in the
                        Standard Model}",
      journal        = "Phys. Rev. Lett.",
      volume         = "124",
      year           = "2020",
      pages          = "071803",
      doi            = "10.1103/PhysRevLett.124.071803",
      eprint         = "1912.07624",
      archivePrefix  = "arXiv",
      primaryClass   = "hep-ph",
      reportNumber   = "CP3-Origins-2019-47 DNRF90, TTP19-047, P3H-19-053",
      SLACcitation   = "%%CITATION = ARXIV:1912.07624;%%"
}

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      SLACcitation   = "%%CITATION = ARXIV:1712.06614;%%"
}

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      author         = "Deppisch, Thomas and Schacht, Stefan and Spinrath,
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      title          = "{Confronting SUSY SO(10) with updated Lattice and
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  title =  "Odeint - Solving Ordinary Differential Equations in C++",
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  title = "Eigen v3",
  url = "http://eigen.tuxfamily.org",
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      author         = "Martin, Stephen P. and Vaughn, Michael T.",
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      SLACcitation   = "%%CITATION = HEP-PH/9308222;%%"
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@article{Antusch:2002rr,
      author         = "Antusch, Stefan and Kersten, Jörn and Lindner, Manfred
                        and Ratz, Michael",
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@article{Antusch:2005gp,
      author         = "Antusch, Stefan and Kersten, Jörn and Lindner, Manfred
                        and Ratz, Michael and Schmidt, Michael Andreas",
      title          = "{Running neutrino mass parameters in see-saw scenarios}",
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      SLACcitation   = "%%CITATION = HEP-PH/0501272;%%"
}

@article{rgepp,
      author         = "Deppisch, Thomas and Herren, Florian",
      title          = "{RGE++, A C++ tool for running and decoupling of singlets in the SM and beyond}",
      journal        = "to be published",
      year           = "2019"
}

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}

@article{Machacek:1984zw,
      author         = "Machacek, Marie E. and Vaughn, Michael T.",
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      author         = "Machacek, Marie E. and Vaughn, Michael T.",
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@article{Machacek:1983fi,
      author         = "Machacek, Marie E. and Vaughn, Michael T.",
      title          = "{Two Loop Renormalization Group Equations in a General
                        Quantum Field Theory. 2. Yukawa Couplings}",
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}

@article{Antusch:2002rr,
      author         = "Antusch, Stefan and Kersten, Jörn and Lindner, Manfred
                        and Ratz, Michael",
      title          = "{Neutrino mass matrix running for nondegenerate seesaw
                        scales}",
      journal        = "Phys. Lett.",
      volume         = "B538",
      year           = "2002",
      pages          = "87-95",
      eprint         = "hep-ph/0203233",
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      SLACcitation   = "%%CITATION = HEP-PH/0203233;%%"
}

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      SLACcitation   = "%%CITATION = HEP-PH/0203027;%%"
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    author = "Bowen, Matthew and Cui, Yanou and Wells, James D.",
    title = "{Narrow trans-TeV Higgs bosons and H $\rightarrow$ hh decays: Two LHC search paths for a hidden sector Higgs boson}",
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    author = "Schabinger, Robert M. and Wells, James D.",
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    author = "Patt, Brian and Wilczek, Frank",
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    author = "Poole, Colin and Thomsen, Anders Eller",
    title = "{Constraints on 3- and 4-loop $\beta$-functions in a general four-dimensional Quantum Field Theory}",
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    archivePrefix = "arXiv",
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    journal = "JHEP",
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    pages = "055",
    year = "2019"
}

@article{Sartore:2020gou,
    author = "Sartore, Lohan and Schienbein, Ingo",
    title = "{PyR@TE 3}",
    eprint = "2007.12700",
    archivePrefix = "arXiv",
    primaryClass = "hep-ph",
    doi = "10.1016/j.cpc.2020.107819",
    journal = "Comput. Phys. Commun.",
    volume = "261",
    pages = "107819",
    year = "2021"
}

@article{Sartore:2020pkk,
    author = "Sartore, Lohan",
    title = "{General RGEs for dimensionful couplings in the $\overline{\mathrm{MS}}$ scheme}",
    eprint = "2006.12307",
    archivePrefix = "arXiv",
    primaryClass = "hep-ph",
    doi = "10.1103/PhysRevD.102.076002",
    journal = "Phys. Rev. D",
    volume = "102",
    number = "7",
    pages = "076002",
    year = "2020"
}

@article{Luo:2002ti,
    author = "Luo, Ming-xing and Wang, Hua-wen and Xiao, Yong",
    title = "{Two loop renormalization group equations in general gauge field theories}",
    eprint = "hep-ph/0211440",
    archivePrefix = "arXiv",
    doi = "10.1103/PhysRevD.67.065019",
    journal = "Phys. Rev. D",
    volume = "67",
    pages = "065019",
    year = "2003"
}

@article{Jack:1982hf,
    author = "Jack, I. and Osborn, H.",
    title = "{Two Loop Background Field Calculations for Arbitrary Background Fields}",
    reportNumber = "DAMTP 82/10",
    doi = "10.1016/0550-3213(82)90212-7",
    journal = "Nucl. Phys. B",
    volume = "207",
    pages = "474--504",
    year = "1982"
}

@article{Jack:1982sr,
    author = "Jack, I. and Osborn, H.",
    title = "{General Two Loop Beta Functions for Gauge Theories With Arbitrary Scalar Fields}",
    reportNumber = "DAMTP 82/26",
    doi = "10.1088/0305-4470/16/5/026",
    journal = "J. Phys. A",
    volume = "16",
    pages = "1101",
    year = "1983"
}

@article{Jack:1984vj,
    author = "Jack, I. and Osborn, H.",
    title = "{General Background Field Calculations With Fermion Fields}",
    reportNumber = "DAMTP-84-2",
    doi = "10.1016/0550-3213(85)90088-4",
    journal = "Nucl. Phys. B",
    volume = "249",
    pages = "472--506",
    year = "1985"
}

@article{Litim:2020jvl,
    author = "Litim, Daniel F. and Steudtner, Tom",
    title = "{ARGES -- Advanced Renormalisation Group Equation Simplifier}",
    eprint = "2012.12955",
    archivePrefix = "arXiv",
    primaryClass = "hep-ph",
    month = "12",
    year = "2020"
}

repository: Herren/RGEpp

repo_name: Herren/RGEpp

branch_name: refs/heads/main

extension: bib


text:
@ARTICLE{9410222,  author={Correa, Pedro Pablo and Cipriano, Aldo and Nuñez, Felipe and Salas, Juan Carlos and Lobel, Hans},  journal={IEEE Access},   title={Forecasting copper electrorefining cathode rejection by means of recurrent neural networks with attention mechanism},   year={2021},  volume={},  number={},  pages={1-1},  doi={10.1109/ACCESS.2021.3074780}}

@article{Ramrez2021,
  doi = {10.1016/j.landurbplan.2020.104002},
  url = {https://doi.org/10.1016/j.landurbplan.2020.104002},
  year = {2021},
  month = apr,
  publisher = {Elsevier {BV}},
  volume = {208},
  pages = {104002},
  author = {Tom{\'{a}}s Ram{\'{\i}}rez and Ricardo Hurtubia and Hans Lobel and Tom{\'{a}}s Rossetti},
  title = {Measuring heterogeneous perception of urban space with massive data and machine learning: An application to safety},
  journal = {Landscape and Urban Planning}
}

@article{Carvallo2020,
  doi = {10.1007/s11192-020-03648-6},
  url = {https://doi.org/10.1007/s11192-020-03648-6},
  year = {2020},
  month = sep,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {125},
  number = {3},
  pages = {3047--3084},
  author = {Andres Carvallo and Denis Parra and Hans Lobel and Alvaro Soto},
  title = {Automatic document screening of medical literature using word and text embeddings in an active learning setting},
  journal = {Scientometrics}
}

@article{yousefpour2020resilinet,
  title={ResiliNet: Failure-Resilient Inference in Distributed Neural Networks},
  author={Yousefpour, Ashkan and Nguyen, Brian Q and Devic, Siddartha and Wang, Guanhua and Kreidieh, Aboudy and Lobel, Hans and Bayen, Alexandre M and Jue, Jason P},
  journal={arXiv e-prints},
  pages={arXiv--2002},
  year={2020}
}

@article{Lobel2020,
  doi = {10.1016/j.cviu.2019.102841},
  url = {https://doi.org/10.1016/j.cviu.2019.102841},
  year = {2020},
  month = feb,
  publisher = {Elsevier {BV}},
  volume = {191},
  pages = {102841},
  author = {Hans Lobel and Ren{\'{e}} Vidal and Alvaro Soto},
  title = {{CompactNets}: Compact Hierarchical Compositional Networks for Visual Recognition},
  journal = {Computer Vision and Image Understanding}
}

@ARTICLE{8708245,  author={Méndez, José Tomás and Lobel, Hans and Parra, Denis and Herrera, Juan Carlos},  journal={IEEE Access},   title={Using Twitter to Infer User Satisfaction With Public Transport: The Case of Santiago, Chile},   year={2019},  volume={7},  number={},  pages={60255-60263},  doi={10.1109/ACCESS.2019.2915107}}

@INPROCEEDINGS{8569404,  author={Catalán, Hernán F. and Lobel, Hans and Herrera, Juan C.},  booktitle={2018 21st International Conference on Intelligent Transportation Systems (ITSC)},   title={Classifying Drivers' Behavior in Public Transport using Inertial Measurement Units and Decision Trees},   year={2018},  volume={},  number={},  pages={217-222},  doi={10.1109/ITSC.2018.8569404}}

@article{Rossetti2019,
  doi = {10.1016/j.landurbplan.2018.09.020},
  url = {https://doi.org/10.1016/j.landurbplan.2018.09.020},
  year = {2019},
  month = jan,
  publisher = {Elsevier {BV}},
  volume = {181},
  pages = {169--178},
  author = {Tom{\'{a}}s Rossetti and Hans Lobel and V{\'{\i}}ctor Rocco and Ricardo Hurtubia},
  title = {Explaining subjective perceptions of public spaces as a function of the built environment: A massive data approach},
  journal = {Landscape and Urban Planning}
}

@techreport{farid2021continual,
  title={Continual Learning of Microscopic Traffic Models Using Neural Networks},
  author={Farid, Yashar Zeinali and Kreidieh, Abdul Rahman and Khalighi, Farnoush and Lobel, Hans and Bayen, Alexandre M},
  year={2021}
}

@article{Mery2015,
  doi = {10.1007/s10921-015-0315-7},
  url = {https://doi.org/10.1007/s10921-015-0315-7},
  year = {2015},
  month = nov,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {34},
  number = {4},
  author = {Domingo Mery and Vladimir Riffo and Uwe Zscherpel and German Mondrag{\'{o}}n and Iv{\'{a}}n Lillo and Irene Zuccar and Hans Lobel and Miguel Carrasco},
  title = {{GDXray}: The Database of X-ray Images for Nondestructive Testing},
  journal = {Journal of Nondestructive Evaluation}
}

@article{DBLP:journals/pami/LobelVS15,
  author    = {Hans Lobel and
               Ren{\'{e}} Vidal and
               Alvaro Soto},
  title     = {Learning Shared, Discriminative, and Compact Representations for Visual
               Recognition},
  journal   = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
  volume    = {37},
  number    = {11},
  pages     = {2218--2231},
  year      = {2015}
}

@inproceedings{DBLP:conf/iccv/LobelVS13,
  author    = {Hans Lobel and
               Ren{\'{e}} Vidal and
               Alvaro Soto},
  title     = {Hierarchical Joint Max-Margin Learning of Mid and Top Level Representations
               for Visual Recognition},
  booktitle = {{ICCV}},
  pages     = {1697--1704},
  publisher = {{IEEE} Computer Society},
  year      = {2013}
}

@inproceedings{DBLP:conf/psivt/LobelVMS13,
  author    = {Hans Lobel and
               Ren{\'{e}} Vidal and
               Domingo Mery and
               Alvaro Soto},
  title     = {Joint Dictionary and Classifier Learning for Categorization of Images
               Using a Max-margin Framework},
  booktitle = {{PSIVT}},
  series    = {Lecture Notes in Computer Science},
  volume    = {8333},
  pages     = {87--98},
  publisher = {Springer},
  year      = {2013}
}

gha_language: TeX


text:
#~----------------------------------------------------------------------------~#
# Copyright (c) 2016 Los Alamos National Security, LLC
# All rights reserved.
#~----------------------------------------------------------------------------~#

include(CMakeDependentOption)

#------------------------------------------------------------------------------#
# Global variables
#------------------------------------------------------------------------------#

set( IO_LIBRARIES )
set( VORO_LIBRARIES )

#------------------------------------------------------------------------------#
# Flecsi Config
#------------------------------------------------------------------------------#

set(FLECSI_EXEC_DIR ${PROJECT_SOURCE_DIR}/flecsi/flecsi/execution)
set(FLECSI_RUNTIME_MAIN ${FLECSI_EXEC_DIR}/runtime_main.cc)

if(FLECSI_RUNTIME_MODEL STREQUAL "serial")
  set(FLECSI_RUNTIME_DRIVER ${FLECSI_EXEC_DIR}/serial/runtime_driver.cc)
  add_definitions( -DFLECSI_RUNTIME_MODEL_serial )
elseif(FLECSI_RUNTIME_MODEL STREQUAL "legion")
  set(FLECSI_RUNTIME_DRIVER ${FLECSI_EXEC_DIR}/legion/runtime_driver.cc)
  add_definitions( -DFLECSI_RUNTIME_MODEL_legion )
elseif(FLECSI_RUNTIME_MODEL STREQUAL "mpilegion")
  set(FLECSI_RUNTIME_DRIVER ${FLECSI_EXEC_DIR}/mpilegion/runtime_driver.cc)
  add_definitions( -DFLECSI_RUNTIME_MODEL_mpilegion )
else()
    message(FATAL_ERROR "This runtime is not yet supported")
endif()

# flecsi needs Cereal
find_package( Cereal REQUIRED )
include_directories(${Cereal_INCLUDE_DIR})

#------------------------------------------------------------------------------#
# Enable Regression Tests
#------------------------------------------------------------------------------#

# find python for running regression tests
find_package (PythonInterp QUIET)
if (PYTHONINTERP_FOUND)
  cmake_dependent_option(
    ENABLE_REGRESSION_TESTS "Enable regression tests" ON
    "ENABLE_UNIT_TESTS" OFF
  )
else ()
  option(ENABLE_REGRESSION_TESTS "Enable regression tests" OFF)
endif ()

if(ENABLE_REGRESSION_TESTS AND NOT PYTHONINTERP_FOUND)
  message(FATAL_ERROR "Regression tests requested, but python was not found")
endif()

if (ENABLE_REGRESSION_TESTS)
  message (STATUS "Found PythonInterp: ${PYTHON_EXECUTABLE}")
endif ()

#------------------------------------------------------------------------------#
# Enable Embedded Interpreters
#------------------------------------------------------------------------------#

# find python for embedding
find_package (PythonLibs QUIET)

option(ENABLE_PYTHON "Enable Python Support" ${PYTHONLIBS_FOUND})

if(ENABLE_PYTHON AND NOT PYTHONLIBS_FOUND)
  message(FATAL_ERROR "Python requested, but not found")
endif()

if (ENABLE_PYTHON)
   message (STATUS "Found PythonLibs: ${PYTHON_INCLUDE_DIRS}")
   include_directories( ${PYTHON_INCLUDE_DIRS} )
   list( APPEND ALE_LIBRARIES ${PYTHON_LIBRARIES} )
   add_definitions( -DHAVE_PYTHON )
endif ()

# find lua for embedding
find_package (Lua 5.2 QUIET)

option(ENABLE_LUA "Enable Lua Support" ${LUA_FOUND})

if(ENABLE_LUA AND NOT LUA_FOUND)
  message(FATAL_ERROR "Lua requested, but not found")
endif()

if (ENABLE_LUA)
   message (STATUS "Found Lua: ${LUA_INCLUDE_DIR}")
   include_directories( ${LUA_INCLUDE_DIR} )
   list( APPEND ALE_LIBRARIES ${LUA_LIBRARIES} )
   add_definitions( -DHAVE_LUA )
endif ()

#------------------------------------------------------------------------------#
# OpenSSL
#------------------------------------------------------------------------------#

# OpenSSL
find_package(OpenSSL QUIET)

option(ENABLE_OPENSSL "Enable OpenSSL Support" ${OPENSSL_FOUND})

if(ENABLE_OPENSSL AND NOT OPENSSL_FOUND)
  message(FATAL_ERROR "OpenSSL requested, but not found")
endif()

if(ENABLE_OPENSSL)
  message(STATUS "Found OpenSSL: ${OPENSSL_INCLUDE_DIR}")
  include_directories(${OPENSSL_INCLUDE_DIR})
  # flecsi uses ENABLE_OPENSSL, flecsale uses HAVE_OPENSSL
  add_definitions(-DHAVE_OPENSSL -DENABLE_OPENSSL)
  list( APPEND ALE_LIBRARIES ${OPENSSL_LIBRARIES} )
endif()

#------------------------------------------------------------------------------#
# Caliper
#------------------------------------------------------------------------------#

find_package(Caliper QUIET)

option(ENABLE_CALIPER "Enable Caliper Support" ${Caliper_FOUND})

if(ENABLE_CALIPER AND NOT Caliper_FOUND)
  message(FATAL_ERROR "Caliper requested, but not found")
endif()

if(ENABLE_CALIPER)
  message(STATUS "Found Caliper: ${Caliper_INCLUDE_DIRS}")
  include_directories(${Caliper_INCLUDE_DIRS})
  add_definitions(-DHAVE_CALIPER)
  list( APPEND ALE_LIBRARIES ${Caliper_LIBRARIES} )
endif()

#------------------------------------------------------------------------------#
# Find some general libraries
#------------------------------------------------------------------------------#

find_package(EXODUSII)

find_package(TECIO QUIET)

find_package(ShaPo QUIET)
if (ShaPo_FOUND)
  message(STATUS "Found ShaPo: ${ShaPo_DIR}")
endif()

if (NOT VTK_FOUND)
  find_package(VTK QUIET)
  if (VTK_FOUND)
    message(STATUS "Found VTK: ${VTK_DIR}")
  endif()
endif()

#------------------------------------------------------------------------------#
# Enable shapo
#------------------------------------------------------------------------------#

if ( ShaPo_FOUND AND VTK_FOUND )
  option(ENABLE_VORO "Enable vornoi with shapo." ON)
else()
  option(ENABLE_VORO "Enable vornoi with shapo." OFF)
endif()

if(ENABLE_VORO)

  if (VTK_FOUND)
    set( VTK_INCLUDED TRUE )
    include( ${VTK_CONFIG} )
    include( ${VTK_USE_FILE} )
    list(APPEND VORO_LIBRARIES ${VTK_LIBRARIES} )
    add_definitions( -DHAVE_VTK )
  else()
    message( FATAL_ERROR "You need libVTK either from TPL or system to enable voro")
  endif()

  if (ShaPo_FOUND)
    include_directories( ${SHAPO_INCLUDE_DIRS} )
    include( ${ShaPo_CONFIG} )
    include( ${SHAPO_USE_FILE} )
    list(APPEND VORO_LIBRARIES ${SHAPO_LIBRARIES} )
    add_definitions( -DHAVE_SHAPO )
  else ()
    message( FATAL_ERROR "You need libShaPo either from TPL or system to enable voro" )
  endif()

  message( STATUS "Voronoi with shapo enabled" )

endif()

#------------------------------------------------------------------------------#
# Enable IO
#------------------------------------------------------------------------------#

if ( VTK_FOUND OR EXODUSII_FOUND OR TECIO_FOUND )
  option(ENABLE_IO "Enable I/O with third party libraries." ON)
else()
  option(ENABLE_IO "Enable I/O with third party libraries." OFF)
endif()

if ( ENABLE_IO )

  if (TECIO_FOUND)
    list( APPEND IO_LIBRARIES ${TECIO_LIBRARY} )
    include_directories( ${TECIO_INCLUDE_DIR} )
    add_definitions( -DHAVE_TECIO )
    message( STATUS "IO with tecio enabled" )
  endif()

  if(EXODUSII_FOUND)
    include_directories( ${EXODUSII_INCLUDE_DIRS} )
    list(APPEND IO_LIBRARIES ${EXODUSII_LIBRARIES} )
    add_definitions( -DHAVE_EXODUS )
    message( STATUS "IO with exodus enabled" )
  endif()

  if ( VTK_FOUND )
    if (NOT VTK_INCLUDED)
      include( ${VTK_CONFIG} )
      include( ${VTK_USE_FILE} )
      add_definitions( -DHAVE_VTK )
    endif()
    list(APPEND IO_LIBRARIES ${VTK_LIBRARIES} )
    message( STATUS "IO with vtk enabled" )
  endif()

  if ( NOT IO_LIBRARIES )
    MESSAGE( FATAL_ERROR "You need libexodus, libtecio, or libvtk from TPL or system to enable io" )
  endif()

endif(ENABLE_IO)

#------------------------------------------------------------------------------#
# ADD to ALE libraries
#------------------------------------------------------------------------------#
list( APPEND ALE_LIBRARIES
  ${IO_LIBRARIES}
  ${VORO_LIBRARIES}
)

repository: m-s-will/flecsale

repo_name: m-s-will/flecsale

extension: cmake


text:
@misc{understandLSTM,
  author = {Christopher Olah},
  title = {Understanding LSTM Networks},
  howpublished = "\url{http://colah.github.io/posts/2015-08-Understanding-LSTMs/}",
  note = "[Online; accessed 28-Apr-2016]",
  year={2015},
}

repository: sibosutd/sutd-docs

repo_name: sibosutd/sutd-docs


text:
SUMMARY = "WSJT-X"

DESCRIPTION = "WSJT-X implements communication protocols or 'modes' called \
FST4, FST4W, FT4, FT8, JT4, JT9, JT65, QRA64, ISCAT, MSK144, and WSPR, as well \
as one called Echo for detecting and measuring your own radio signals reflected \
from the Moon. These modes were all designed for making reliable, confirmed QSOs \
under extreme weak-signal conditions."

HOMEPAGE = "https://physics.princeton.edu/pulsar/k1jt/wsjtx.html"

LICENSE = "GPLv3"
LIC_FILES_CHKSUM = "file://COPYING;md5=6ee272f0a941cfe6ea96c7a0a7990260"

SRC_URI = "git://git.code.sf.net/p/wsjt/wsjtx;protocol=git;branch=master \
           file://0001-Add-shmem-dependency-to-jt9.patch \
           file://0002-Disable-openmp-code.patch \
          "

SRCREV = "0c42df79dfd9a83fbfbf21c5b054fe6d09e82327"

S = "${WORKDIR}/git"

DEPENDS = "qttools-native asciidoc-native libgfortran boost fftw libusb \
           qtmultimedia qtserialport hamlib qttools"

# WSPR, FT8 and other similar protocols require a synchronized system clock and
# adjusted volume levels. This is why ntpdate and alsamixer are recommended.
RRECOMMENDS_${PN} = "alsa-utils-alsamixer"
RSUGGESTS_${PN} = "ntpdate"

inherit cmake_qt5

EXTRA_OECMAKE = " \
                 -DWSJT_GENERATE_DOCS='OFF' \
                 -Dhamlib_LIBRARY_DIRS='${WORKDIR}/recipe-sysroot/usr/lib/' \
                "

OECMAKE_FIND_ROOT_PATH_MODE_PROGRAM = "BOTH"
OECMAKE_GENERATOR = "Unix Makefiles"

INSANE_SKIP_${PN} += "already-stripped"

# Because some of the code is written in fortran, we'll need GCC with fortran
# support built-in. To enable this, you must add the following line to the
# conf/local.conf file:
#
# FORTRAN_forcevariable = ",fortran"
#

repository: pschneiders/meta-amateurradio

repo_name: pschneiders/meta-amateurradio


text:
@Article{ref1,
	author="Gama,J.",
	title = "A survey on learning from data streams: current and future trends",
	journal="Progress in Artificial Intelligence",
	volume="Vol. 1",
	year="2012",
	pages="45–55",
	howpublished = "\url{https://doi.org/10.1007/s13748-011-0002-6}"
}

@Article{ref17,
	author="Kotlowski,W. and Slowinski,R.",
	title = "On Nonparametric Ordinal Classification with Monotonicity Constraints",
	journal="Progress in Artificial Intelligence",
	volume="Vol. 25",
	year="2013",
	pages="2576-2589",
	howpublished = "\url{http://doi.ieeecomputersociety.org/10.1109/TKDE.2012.204}"
}

@Book{ref3,
  	author="Lior, R. and Maimon, O.Z.",
	title = "Data Mining With Decision Trees: Theory And Applications",
	volume="69",
	series={Series In Machine Perception And Artificial Intelligence},
	publisher ="World Scientific Publishing Co. Pte. Ldt",
	year="2007",
	pages="264",
	howpublished = "\url{https://books.google.es/books?id=U1HICgAAQBAJ&printsec=frontcover&hl=es#v=onepage&q&f=false}"
}

@misc{ref4,
	title = "Decision tree basics",
	howpublished = "\url{https://bookdown.org/content/2031/arboles-de-decision-parte-i.html#que-son-los-arboles-de-decision}",
}

@Article{ref5,
	author = {Sá, J. and Almeida, A. and Pereira da Rocha, B. and Mota, M. and De Souza, J.S. and Dentel, L.},
	year = {2016},
	month = {03},
	pages = {1-5},
	title = {Lightning Forecast Using Data Mining Techniques On Hourly Evolution Of The Convective Available Potential Energy},
	journal={Brazilian Congress on Computational Intelligence, Fortaleza},
	doi = {10.21528/CBIC2011-27.1},
	howpublished = "\url{https://www.researchgate.net/figure/a-describes-the-components-of-a-decision-tree-the-Nodes-represent-the-possible_fig2_303773171}"
}

@misc{ref6,
	title = "Fórmula RSS, Gini y Entropía",
	howpublished = "\url{https://www.quantstart.com/articles/Beginners-Guide-to-Decision-Trees-for-Supervised-Machine-Learning}",
}

@misc{ref7,
	title = "Fórmula CER",
	howpublished = "\url{https://towardsdatascience.com/everything-you-need-to-know-about-decision-trees-8fcd68ecaa71}",
}

@misc{ref9,
	title = "Definición Hoeffding tree",
	howpublished = "\url{http://weka.sourceforge.net/doc.dev/weka/classifiers/trees/HoeffdingTree.html}",
}

@inproceedings{ref10,
 author = {Manapragada, C. and Webb, G. I. and Salehi, M.},
 title = {Extremely Fast Decision Tree},
 booktitle = {Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery \&\#38; Data Mining},
 series = {KDD '18},
 year = {2018},
 isbn = {978-1-4503-5552-0},
 location = {London, United Kingdom},
 pages = {1953--1962},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/3219819.3220005},
 doi = {10.1145/3219819.3220005},
 acmid = {3220005},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {classification, decision trees, incremental learning},
}

@misc{ref11,
	title = "Imagen ciclo CVFDT",
	howpublished = "\url{https://studylib.net/doc/9462259/cvfdt-algorithm}",
}

@Book{refff12,
	author="Jadhav,S.A. and Kosbatwar,S.P.",
	title="Concept-adapting very Fast Decision Tree with Misclassification Error",
	volume="5",
	publisher="IJARCET",
	year="2016",
	howpublished = "\url{https://pdfs.semanticscholar.org/a1a4/97e7e6845bfb81ecb5fa02fc80a47001afec.pdf}"
}

@Article{ref13,
	author="Pfahringer,B. and Holmes,G. and Kirkby,R.",
	title = "New Options for Hoeffding Trees",
	journal="Lecture Notes in Computer Science. AI 2007:Advances in Artificial Intelligence",
	volume="Vol. 4830",
	year="2007",
	pages="90-99",
	howpublished = "\url{https://doi.org/10.1007/978-3-540-76928-6_11}"
}

@Article{ref14,
	author="Ben-David,A.",
	title = "Monotonicity Maintenance in Information-Theoretic Machinie Learning Algorithms",
	journal="Machine Learning. Issue 1",
	volume="Vol.19",
	publisher="Kluwer Academic Publishers-Plenum Publishers",
	year="1995",
	pages="29-43",
	howpublished = "\url{https://doi.org/10.1023/A:1022655006810}"
}

@Article{ref15,
	title={Monotonic classification: An overview on algorithms, performance measures and data sets},
  author={Cano,J.R. and Gutiérrez,P.A. and  Krawczyk,B. and Wozniak,M. and García,S.},
  journal="Neurocomputing",
  volume="Vol.341",
  pages="168-182",
  year="2019"
}

@article{ref16,
author="Ben-David, A.",
title="Learning and classification of monotonic ordinal concepts",
journal="Computational Intelligence",
ISSN="",
publisher="",
year="1989",
month="",
volume="5",
number="",
pages="45-49",
URL="https://ci.nii.ac.jp/naid/30026969527/en/",
DOI="10.1111/j.1467-8640.1989.tb00314.x",
}

@misc{ref31,
	title = "Definición MOA",
	howpublished = "\url{https://moa.cms.waikato.ac.nz/}",
}

repository: CarlosSequi/TFM-DataScience-DATCOM

repo_name: CarlosSequi/TFM-DataScience-DATCOM


text:
@online{holmes_role_nodate,
	title = {The Role of a Wine Pricing Competition in Teaching Data Mining at Stanford},
	url = {http://www.causeweb.org/webinar/activity/2011-04/},
	abstract = {Excerpt: "We will discuss how we coordinated, held, and judged a wine pricing competition (hosted on Kaggle-in-Class - inclass.kaggle.com) to engage students in applying prediction techniques learned in our data mining class at Stanford. We found that with proper incentives, the competition was very successful in getting students interested in working collaboratively in a race against the clock to eke out additional predictive performance in their models."},
	author = {Holmes, Susan and Ray, Nelson},
	urldate = {2011-05-06}
}

repository: pmean/build-website

repo_name: pmean/build-website


text:
require gtkhtml.inc

DEPENDS = "gtk+ virtual/gail libbonoboui libgnomeprintui libgnomeui gal-2.0"
PR = "r1"

SRC_URI = "http://ftp.debian.org/debian/pool/main/libg/libgtkhtml2/libgtkhtml2_2.6.3.orig.tar.gz"

FILES_${PN} += "${datadir}/gtkhtml-3.0 ${libdir}/gtkhtml/*.so"
FILES_${PN}-dev += "${libdir}/gtkhtml"

do_stage() {
    mv src/libgtkhtml.pc src/libgtkhtml-2.0.pc || true
    autotools_stage_all
}

do_compile() {
	oe_runmake ORBIT_IDL=${STAGING_BINDIR_NATIVE}/orbit-idl-2
}

SRC_URI[md5sum] = "29690b14762a970b9ff725c85627c24b"
SRC_URI[sha256sum] = "ee8dcb9cb850f94e75e374273b0860bcf214fd242651ee22ac74cbfd37449b4f"


text:
@article{bezanson2017julia,
  title={Julia: A fresh approach to numerical computing},
  author={Bezanson, Jeff and Edelman, Alan and Karpinski, Stefan and Shah, Viral B.},
  journal={SIAM Review},
  volume={59},
  number={1},
  pages={65--98},
  year={2017},
  publisher={SIAM},
  doi={10.1137/141000671}
}

@article{black1973pricing,
  title={The pricing of options and corporate liabilities},
  author={Black, Fischer and Scholes, Myron},
  journal={Journal of political economy},
  volume={81},
  number={3},
  pages={637--654},
  year={1973},
  publisher={The University of Chicago Press},
  DOI={10.1086/260062}
}

@book{mcdonald_2013,
 	place={Boston},
	title={Derivatives markets},
	ISBN={9780321543080},
	publisher={Pearson},
	author={Mc{D}onald, Robert L},
	year={2013}
}

@book{clewlow_strickland_1998,
 	title={Implementing Derivative Models},
	ISBN={978-0-471-96651-7},
	publisher={John Wiley & Sons Incorporated},
	author={Clewlow, Les and Strickland, Chris},
	year={1998},
	month={Jun},
  doi={10.1057/9780230392687.0018}
}

@article{politis1994stationary,
  title={The stationary bootstrap},
  author={Politis, Dimitris N and Romano, Joseph P},
  journal={Journal of the American Statistical association},
  volume={89},
  number={428},
  pages={1303--1313},
  year={1994},
  publisher={Taylor \& Francis},
  doi={10.1080/01621459.1994.10476870}
}

@article{politis2004automatic,
  title={Automatic block-length selection for the dependent bootstrap},
  author={Politis, Dimitris N and White, Halbert},
  journal={Econometric reviews},
  volume={23},
  number={1},
  pages={53--70},
  year={2004},
  publisher={Taylor \& Francis},
  doi={10.1081/etc-120028836}
}

@article{patton2009correction,
  title={Correction to “Automatic block-length selection for the dependent bootstrap” by D. Politis and H. White},
  author={Patton, Andrew and Politis, Dimitris N and White, Halbert},
  journal={Econometric Reviews},
  volume={28},
  number={4},
  pages={372--375},
  year={2009},
  publisher={Taylor \& Francis},
  doi={10.1080/07474930802459016}
}

@book{culp2011risk,
  title={Risk transfer: derivatives in theory and practice},
  author={Culp, Christopher L},
  year={2011},
  publisher={John Wiley \& Sons}
}

@misc{pound_2022,
	title={Black Scholes Delta Hedge in Imperfect Markets},
	author={Pound, Mitchell},
	year={2022},
	note={Presented at Fall Student Research Symposium at Utah State University},
	month={Dec},
  howpublished={\url{https://symposium.foragerone.com/2022-usu-fall-student-research-symposium/presentations/50139}}
}

@misc{financialderivativesjl,
  title = {FinancialDerivatives.jl},
  author = {Brilhante, Alexandre},
  year = {2018},
  journal = {Github repository},
  publisher = {Github},
  url = {https://github.com/JuliaQuant/FinancialDerivatives.jl}
}

@misc{financialmontecarlojl,
  title = {FinancialMonteCarlo.jl},
  author = {Scaramuzzino, Nicola},
  year = {2018},
  journal = {Github repository},
  publisher = {Github},
  url = {https://github.com/rcalxrc08/FinancialMonteCarlo.jl}
}

@misc{strategemsjl,
  title = {Strategems.jl},
  author = {Amos, Jacob},
  year = {2019},
  journal = {Github repository},
  publisher = {Github},
  url = {https://github.com/dysonance/Strategems.jl}
}

gha_language: Julia


text:
@online{ AV01,
    author = {Mike Pultz},
    title  = {Accessing Google Speech API / Chrome 11},
    year   = {2011},
    month  = {March},
    url    = {http://mikepultz.com/2011/03/accessing-google-speech-api-chrome-11/}
}

@online{ AV02,
    author = {Romain Beauxis and Samuel Mimram and Matthias Grosser and Seven Du},
    title  = {Shine},
    year   = {2013},
    month  = {August},
    url    = {https://github.com/savonet/shine}
}

repository: vly/rpy-dictaphone

repo_name: vly/rpy-dictaphone


text:
@misc{radanne2019kindly,
    title={Kindly Bent to Free Us},
    author={Gabriel Radanne and Hannes Saffrich and Peter Thiemann},
    year={2019},
    eprint={1908.09681},
    archivePrefix={arXiv},
    primaryClass={cs.PL}
}
@InProceedings{karthik2018hacspec,
author="Bhargavan, Karthikeyan
and Kiefer, Franziskus
and Strub, Pierre-Yves",
editor="Cremers, Cas
and Lehmann, Anja",
title="hacspec: Towards Verifiable Crypto Standards",
booktitle="Security Standardisation Research",
year="2018",
publisher="Springer International Publishing",
address="Cham",
pages="1--20",
abstract="We present hacspec, a collaborative effort to design a formal specification language for cryptographic primitives. Specifications (specs) written in hacspec are succinct, easy to read and implement, and lend themselves to formal verification using a variety of existing tools. The syntax of hacspec is similar to the pseudocode used in cryptographic standards but is equipped with a static type system and syntax checking tools that can find errors. Specs written in hacspec are executable and can hence be tested against test vectors taken from standards and specified in a common format. Finally, hacspec is designed to be compilable to other formal specification languages like F{\$}{\$}{\{}{\}}^{\{}{\backslash}star {\}}{\$}{\$}, EasyCrypt, Coq, and cryptol, so that it can be used as the basis for formal proofs of functional correctness and cryptographic security using various verification frameworks. This paper presents the syntax, design, and tool architecture of hacspec. We demonstrate the use of the language to specify popular cryptographic algorithms, and describe preliminary compilers from hacspec to F{\$}{\$}{\{}{\}}^{\{}{\backslash}star {\}}{\$}{\$}and to EasyCrypt. Our goal is to invite authors of cryptographic standards to write their pseudocode in hacspec and to help the formal verification community develop the language and tools that are needed to promote high-assurance cryptographic software backed by mathematical proofs.",
isbn="978-3-030-04762-7"
}
@article{oxide,
  author    = {Aaron Weiss and
               Daniel Patterson and
               Nicholas D. Matsakis and
               Amal Ahmed},
  title     = {Oxide: The Essence of Rust},
  journal   = {CoRR},
  volume    = {abs/1903.00982},
  year      = {2019},
  url       = {http://arxiv.org/abs/1903.00982},
  archivePrefix = {arXiv},
  eprint    = {1903.00982},
  timestamp = {Sat, 30 Mar 2019 19:27:21 +0100},
  biburl    = {https://dblp.org/rec/journals/corr/abs-1903-00982.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

repository: hacspec/hacspec

repo_name: hacspec/hacspec

gha_language: Coq


text:
@Article{nulsen2021pan,
  title = {Pan-cancer detection of driver genes at the single-patient resolution},
  author = {Joel Nulsen and Hrvoje Misetic and Christopher Yau and Francesca D Ciccarelli},
  journal = {Genome medicine},
  volume = {13},
  number = {1},
  pages = {1--14},
  year = {2021},
  publisher = {BioMed Central},
  date = {2021-01-01},
}


text:
@article{andrew_assessing_2013,
	title = {Assessing insect responses to climate change: What are we testing for? Where should we be heading?},
	volume = {1},
	issn = {2167-8359},
	shorttitle = {Assessing insect responses to climate change},
	url = {https://peerj.com/articles/11/},
	doi = {10.7717/peerj.11},
	urldate = {2013-08-15},
	journal = {{PeerJ}},
	author = {Andrew, Nigel R. and Hill, Sarah J. and Binns, Matthew and Bahar, Md Habibullah and Ridley, Emma V. and Jung, Myung-Pyo and Fyfe, Chris and Yates, Michelle and Khusro, Mohammad},
	month = feb,
	year = {2013},
	pages = {e11},
	file = {Andrew et al, 2013.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/D947QECS/Andrew et al, 2013.pdf:application/pdf;Assessing insect responses to climate change: What are we testing for? Where should we be heading? [PeerJ]:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/7NVX4H83/11.html:text/html}
},

@article{russell_costs_2006,
	title = {Costs and benefits of symbiont infection in aphids: variation among symbionts and across temperatures},
	volume = {273},
	issn = {0962-8452, 1471-2954},
	shorttitle = {Costs and benefits of symbiont infection in aphids},
	url = {http://rspb.royalsocietypublishing.org/content/273/1586/603},
	doi = {10.1098/rspb.2005.3348},
	abstract = {Symbiosis is prevalent throughout the tree of life and has had a significant impact on the ecology and evolution of many bacteria and eukaryotes. The benevolence of symbiotic interactions often varies with the environment, and such variation is expected to play an important role in shaping the prevalence and distributions of symbiosis throughout nature. In this study, we examine how the fitness of aphids is influenced by infection with one of three maternally transmitted bacteria, {‘Candidatus} Serratia symbiotica', {‘Candidatus} Hamiltonella defensa' and {‘Candidatus} Regiella insecticola', addressing how symbiont benevolence varies with temperature. We find that the effects of these ‘secondary' symbionts on Acyrthosiphon pisum depend on when and whether aphids are exposed to a brief period of heat shock. We also demonstrate that symbionts—even closely related isolates—vary in their effects on hosts. Our results indicate similar effects of S. symbiotica and H. defensa in conferring tolerance to high temperatures and a liability of R. insecticola under these same conditions. These findings reveal a role for heritable symbionts in the adaptation of aphids to their abiotic environments and add to an expanding body of knowledge on the adaptive significance of symbiosis.},
	language = {en},
	number = {1586},
	urldate = {2013-08-15},
	journal = {Proceedings of the Royal Society B: Biological Sciences},
	author = {Russell, Jacob A. and Moran, Nancy A.},
	month = jul,
	year = {2006},
	note = {{PMID:} 16537132},
	keywords = {aphid, fitness, heat, maternal transmission, secondary symbiont, Wolbachia},
	pages = {603--610},
	file = {Full Text PDF:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/8TEJ6N6M/Russell et Moran - 2006 - Costs and benefits of symbiont infection in aphids.pdf:application/pdf;Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/83QRHRBV/603.html:text/html}
},

@article{cassone_divergent_2011,
	title = {Divergent transcriptional response to thermal stress by Anopheles gambiae larvae carrying alternative arrangements of inversion {2La}},
	volume = {20},
	copyright = {© 2011 Blackwell Publishing Ltd},
	issn = {1365-{294X}},
	url = {http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2011.05114.x/abstract},
	doi = {10.1111/j.1365-294X.2011.05114.x},
	abstract = {The African malaria mosquito Anopheles gambiae is polymorphic for chromosomal inversion {2La}, whose frequency strongly correlates with degree of aridity across environmental gradients. Recent physiological studies have associated {2La} with resistance to desiccation in adults and thermal stress in larvae, consistent with its proposed role in aridity tolerance. However, the genetic basis of these traits remains unknown. To identify genes that could be involved in the differential response to thermal stress, we compared global gene expression profiles of heat-hardened {2La} or {2L+a} larvae at three time points, for up to eight hours following exposure to the heat stress. Treatment and control time series, replicated four times, revealed a common and massive induction of a core set of heat-shock genes regardless of {2La} orientation. However, clear differences between the {2La} and {2L+a} arrangements emerged at the earliest (0.25 h) time point, in the intensity and nature of the stress response. Overall, {2La} was associated with the more aggressive response: larger numbers of genes were heat responsive and up-regulated. Transcriptionally induced genes were enriched for functions related to ubiquitin-proteasomal degradation, chaperoning and energy metabolism. The more muted transcriptional response of {2L+a} was largely repressive, including genes involved in proteolysis and energy metabolism. These results may help explain the maintenance of the {2La} inversion polymorphism in An. gambiae, as the survival benefits offered by high thermal sensitivity in harsh climates could be offset by the metabolic costs of such a drastic response in more equable climates.},
	language = {en},
	number = {12},
	urldate = {2013-08-15},
	journal = {Molecular Ecology},
	author = {Cassone, Bryan J. and Molloy, Matthew J. and Cheng, Changde and Tan, John C. and Hahn, Matthew W. and Besansky, Nora J.},
	year = {2011},
	keywords = {Anopheles gambiae, chromosomal inversion, heat hardening, malaria vector, microarray, thermal stress, transcriptional profiling},
	pages = {2567–2580},
	file = {Cassone et al, 2011.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/IQV4GT2X/Cassone et al, 2011.pdf:application/pdf;Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/TD534529/abstract.html:text/html}
},

@article{andersen_dopamine_2006,
	title = {Dopamine levels in the mosquito Aedes aegypti during adult development, following blood feeding and in response to heat stress},
	volume = {52},
	issn = {0022-1910},
	url = {http://www.sciencedirect.com/science/article/pii/S0022191006001545},
	doi = {10.1016/j.jinsphys.2006.08.004},
	abstract = {Dopamine, a catecholamine neurotransmitter, is important for insect development and is known to be involved in insect stress responses. In the current study, dopamine was analysed in Aedes aegypti heads by {HPLC.} We found that immediately after adult emergence, males have significantly higher concentrations of dopamine than females, and that dopamine concentrations decrease with age in both sexes. Dopamine levels increase in females following a blood meal suggesting that dopamine might be involved in ovarian- and/or egg-development. We also found that female mosquitoes have a higher tolerance to a short term thermal stress in a water bath than males up to 44 {°C}, however, both sexes die if exposed to short term temperatures between 44 and 45 {°C.} Finally, we did not find any indication that dopamine levels were associated with short time thermal stress response in female mosquitoes.},
	number = {11–12},
	urldate = {2013-08-15},
	journal = {Journal of Insect Physiology},
	author = {Andersen, Janne Pleidrup and Schwartz, Alex and Gramsbergen, Jan Bert and Loeschcke, Volker},
	month = nov,
	year = {2006},
	keywords = {Ecdysone, {HPLC}, Juvenile hormone, Stress response, Thermal limits},
	pages = {1163--1170},
	file = {Andersen et al, 2006.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/362XPBK5/Andersen et al, 2006.pdf:application/pdf;ScienceDirect Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/44UU7UH7/S0022191006001545.html:text/html}
},

@article{cayetano_genotype-by-genotype_2013,
	title = {Genotype-by-genotype specificity remains robust to average temperature variation in an aphid/endosymbiont/parasitoid system},
	volume = {26},
	copyright = {© 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology},
	issn = {1420-9101},
	url = {http://onlinelibrary.wiley.com/doi/10.1111/jeb.12154/abstract},
	doi = {10.1111/jeb.12154},
	abstract = {Genotype-by-genotype interactions demonstrate the existence of variation upon which selection acts in host–parasite systems at respective resistance and infection loci. These interactions can potentially be modified by environmental factors, which would entail that different genotypes are selected under different environmental conditions. In the current study, we checked for a G × G × E interaction in the context of average temperature and the genotypes of asexual lines of the endoparasitoid wasp Lysiphlebus fabarum and isolates of Hamiltonella defensa, a protective secondary endosymbiont of the wasp's host, the black bean aphid Aphis fabae. We exposed genetically identical aphids harbouring different isolates of H. defensa to three asexual lines of the parasitoid and measured parasitism success under three different temperatures (15, 22 and 29 {°C).} Although there was clear evidence for increased susceptibility to parasitoids at the highest average temperature and a strong G × G interaction between the host's symbionts and the parasitoids, no modifying effect of temperature, that is, no significant G × G × E interaction, was detected. This robustness of the observed specificity suggests that the relative fitness of different parasitoid genotypes on hosts protected by particular symbionts remains uncomplicated by spatial or temporal variation in temperature, which should facilitate biological control strategies.},
	language = {en},
	number = {7},
	urldate = {2013-08-15},
	journal = {Journal of Evolutionary Biology},
	author = {Cayetano, L. and Vorburger, C.},
	year = {2013},
	keywords = {abiotic environment, Aphis fabae, coevolution, Hamiltonella defensa, secondary symbiont},
	pages = {1603–1610},
	annote = {Pas certain que ce soit bien utile. À relire.},
	file = {Cavetano and Vorburger, 2013.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/HAJBGA6T/Cavetano and Vorburger, 2013.pdf:application/pdf;Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/TKWS2QQQ/abstract;jsessionid=708A48ECF1B2351BC39E86A61A20FF33.html:text/html}
},

@incollection{loeschcke_high-temperature_1997,
	series = {Experientia Supplementum},
	title = {High-temperature stress and the evolution of thermal resistance in Drosophila},
	copyright = {©1997 Birkhäuser Verlag},
	isbn = {978-3-0348-9813-3, 978-3-0348-8882-0},
	url = {http://link.springer.com/chapter/10.1007/978-3-0348-8882-0_10},
	abstract = {The evolution of thermal resistance and acclimation is reviewed at the population level using populations and isofemale lines of Drosophila buzzatii and D. melanogaster originating from different climatic regions. In general, ample genetic variation for thermal resistance was found within and among populations. A rough correlation between the climate of origin and thermal resistance was apparent. Acclimation at a non-lethal temperature led to a significant increase in survival after heat shock, and recurrent acclimation events generally increased survival even further. Acclimation effects lasted over several days, but this effect decreased gradually with time since acclimation. Protein studies showed that the concentration of Hsp70 in adult flies is greatly increased by acclimation and thereafter gradually decreases with time. For populations with relatively high survival at one life stage, survival often was low at other life stages. Furthermore, selection on different life stages showed that a selection response in one life stage did not necessarily result in a correlated response in another. These observations indicate that different mechanisms or genes at least in part are responsible for or are expressed at different developmental stages. Selection for increased resistance was successful despite low heritabilities for the trait. Survival and fertility were compared between acclimated and non-acclimated flies, and a cost of expressing the “heat shock response” was identified in that increased survival after acclimation was accompanied by reduced fertility. The relative costs increased under nutritional stress. Metabolic rate was genetically variable but did not correlate with temperature resistance. The more resistant lines, however, often had shorter developmental time. Inbreeding reduced thermal stress tolerance of adult flies, but it did not reduce tolerance of embryos that possibly are exposed to strong natural selection for thermal stress resistance. In general, inbreeding may reduce stress resistance, and thus multiple stressful events may account for increased inbreeding depression in harsh environments.},
	language = {en},
	number = {83},
	urldate = {2013-08-15},
	booktitle = {Environmental Stress, Adaptation and Evolution},
	publisher = {Birkhäuser Basel},
	author = {Loeschcke, Volker and Krebs, Robert A. and Dahlgaard, Jesper and Michalak, Pawel},
	editor = {Bijlsma, Dr R. and Loeschcke, Dr V.},
	month = jan,
	year = {1997},
	keywords = {Biomedicine general, Life Sciences, general},
	pages = {175--190},
	annote = {Bouquin non disponible à la {BU.}},
	file = {Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/2JGZ4543/978-3-0348-8882-0_10.html:text/html}
},

@article{lahondere_mosquitoes_2012,
	title = {Mosquitoes Cool Down during Blood Feeding to Avoid Overheating},
	volume = {22},
	issn = {0960-9822},
	url = {http://www.sciencedirect.com/science/article/pii/S096098221101311X},
	doi = {10.1016/j.cub.2011.11.029},
	abstract = {Summary
	Temperature is one of the most important factors affecting the life of insects [1]. For instance, high temperatures can have deleterious effects on insects' physiology. Therefore, many of them have developed various strategies to avoid the risk of thermal stress [2]. They can seek a fresher environment or adjust their water loss, but hematophagous insects, such as mosquitoes, must confront the issue of thermal stress at each feeding event on a warm-blooded host [3]. To better understand to what extent mosquitoes are exposed to thermal stress while feeding, we conducted a real-time infrared thermographic analysis of mosquitoes' body temperature during feeding on both warm blood and sugar solution. First, our results highlighted differences in temperature between the body parts of the mosquito (i.e., heterothermy) during blood intake, but not during sugar meals. We also found that anopheline mosquitoes can decrease their body temperature during blood feeding thanks to evaporative cooling of fluid droplets, which are excreted and maintained at the end of the abdomen. This mechanism protects the insect itself, probably as well as the sheltered microorganisms, both symbionts and parasites, from thermal stress. These findings constitute the first evidence of thermoregulation among hematophagous insects and explain the paradox of fresh blood excretion during feeding.},
	number = {1},
	urldate = {2013-08-15},
	journal = {Current Biology},
	author = {Lahondère, Chloé and Lazzari, Claudio R.},
	month = jan,
	year = {2012},
	pages = {40--45},
	file = {ScienceDirect Full Text PDF:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/JVZQ26UN/Lahondère et Lazzari - 2012 - Mosquitoes Cool Down during Blood Feeding to Avoid.pdf:application/pdf;ScienceDirect Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/ACGXATPE/S096098221101311X.html:text/html}
},

@article{wernegreen_mutualism_2012,
	title = {Mutualism meltdown in insects: bacteria constrain thermal adaptation},
	volume = {15},
	issn = {1369-5274},
	shorttitle = {Ecology and industrial {microbiology/Special} section: Microbial proteomics},
	url = {http://www.sciencedirect.com/science/article/pii/S1369527412000173},
	doi = {10.1016/j.mib.2012.02.001},
	abstract = {Predicting whether and how organisms will successfully cope with climate change presents critical questions for biologists and environmental scientists. Models require knowing how organisms interact with their abiotic environment, as well understanding biotic interactions that include a network of symbioses in which all species are embedded. Bacterial symbionts of insects offer valuable models to examine how microbes can facilitate and constrain adaptation to a changing environment. While some symbionts confer plasticity that accelerates adaptation, long-term bacterial mutualists of insects are characterized by tight lifestyle constraints, genome deterioration, and vulnerability to thermal stress. These essential bacterial partners are eliminated at high temperatures, analogous to the loss of zooanthellae during coral bleaching. Recent field-based studies suggest that thermal sensitivity of bacterial mutualists constrains insect responses. In this sense, highly dependent mutualisms may be the Achilles' heel of thermal responses in insects.},
	number = {3},
	urldate = {2013-08-15},
	journal = {Current Opinion in Microbiology},
	author = {Wernegreen, Jennifer J},
	month = jun,
	year = {2012},
	pages = {255--262},
	file = {ScienceDirect Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/XMRSAG44/S1369527412000173.html:text/html;Wernegreen et al, 2012.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/JVAPS2PZ/Wernegreen et al, 2012.pdf:application/pdf}
},

@article{bettencourt_polyglutamine_2007,
	title = {Polyglutamine expansion in Drosophila: thermal stress and Hsp70 as selective agents},
	volume = {32},
	issn = {0250-5991, 0973-7138},
	shorttitle = {Polyglutamine expansion in Drosophila},
	url = {http://link.springer.com/article/10.1007/s12038-007-0053-9},
	doi = {10.1007/s12038-007-0053-9},
	abstract = {Repetitive {DNA} sequences that encode polyglutamine tracts are prone to expansion and cause highly deleterious phenotypes of neurodegeneration. Despite this tendency, polyglutamine tracts ({“polyQs”)} are conserved features of eukaryotic genomes. {PolyQs} are the most frequent protein-coding homotypic repeat in insect genomes, and are found predominantly in genes encoding transcription factors conserved from Drosophila through human. Although highly conserved across species, {polyQ} lengths vary widely within species. In D. melanogaster, {polyQs} in 25 genes have more alleles and higher heterozygosity than all other poly-amino acid tracts. The heat shock protein Hsp70 is a principal suppressor of {polyQ} expansions and may play a key role in modulating the phenotypes of the alleles that encode them. Hsp70 also promotes tolerance of natural thermal stress in Drosophila and diverse organisms, a role which may deplete the chaperone from buffering against {polyQ} toxicity. Thus in stressful environments, natural selection against long {polyQ} alleles more prone to expansion and deleterious phenotypes may be more effective. This hypothesis can be tested by measuring the phenotypic interactions between Hsp70 and {polyQ} transgenes in D. melanogaster undergoing natural thermal stress, an approach which integrates comparative genomics with experimental and ecological genetics.},
	language = {en},
	number = {3},
	urldate = {2013-08-15},
	journal = {Journal of Biosciences},
	author = {Bettencourt, Brian R. and Hogan, Catherine C. and Nimali, Mario},
	month = apr,
	year = {2007},
	keywords = {Biomedicine general, {CAG} repeats, Cell Biology, heat shock proteins, Hsp70, Life Sciences, general, Microbiology, Plant Sciences, Polyglutamine, Zoology},
	pages = {537--547},
	file = {Bettancourt et al, 2007.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/DB6DMUPW/Bettancourt et al, 2007.pdf:application/pdf;Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/F5MSI9XW/s12038-007-0053-9.html:text/html}
},

@article{kang_roles_2009,
	title = {Roles of Thermal Adaptation and Chemical Ecology in Liriomyza Distribution and Control},
	volume = {54},
	url = {http://www.annualreviews.org/doi/abs/10.1146/annurev.ento.54.110807.090507},
	doi = {10.1146/annurev.ento.54.110807.090507},
	abstract = {Many Liriomyza species are pests of agricultural and ornamental plants. In the past two decades, the occurrence and distribution of certain Liriomyza species have changed dramatically, leading to an extensive body of research papers. First, we review the association of thermal tolerance with population dynamics, geographic distribution, and species displacement. Differences in thermal tolerances between species result in their differential geographic locations and overwintering ranges. Displacements among Liriomyza species are associated with their temperature adaptation. We examine the chemical linkage of plants, Liriomyza, and their parasitoids. Chemical compounds from host and nonhost plants mediate the behavior of Liriomyza and their parasitoids. Liriomyza and their parasitoids use chemical cues to locate their hosts. Induced compounds can be used as attractants of parasitoids or repellents of Liriomyza. Thus, understanding the thermal tolerances and chemical ecology of Liriomyza may enable researchers to predict geographic distribution and to develop novel control strategies.},
	number = {1},
	urldate = {2013-08-15},
	journal = {Annual Review of Entomology},
	author = {Kang, Le and Chen, Bing and Wei, Jia-Ning and Liu, Tong-Xian},
	year = {2009},
	note = {{PMID:} 18710304},
	keywords = {cold tolerance, infochemicals, leafminer, parasitoid, plant volatiles, thermal stress},
	pages = {127--145},
	file = {Kang et al, 2009.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/9AJMAH4V/Kang et al, 2009.pdf:application/pdf}
},

@article{sorensen_studying_2007,
	title = {Studying stress responses in the post-genomic era: its ecological and evolutionary role},
	volume = {32},
	issn = {0250-5991, 0973-7138},
	shorttitle = {Studying stress responses in the post-genomic era},
	url = {http://link.springer.com/article/10.1007/s12038-007-0044-x},
	doi = {10.1007/s12038-007-0044-x},
	abstract = {Most investigations on the effects of and responses to stress exposures have been performed on a limited number of model organisms in the laboratory. Here much progress has been made in terms of identifying and describing beneficial and detrimental effects of stress, responses to stress and the mechanisms behind stress tolerance. However, to gain further understanding of which genes are involved in stress resistance and how the responses are regulated from an ecological and evolutionary perspective there is a need to combine studies on multiple levels of biological organization from {DNA} to phenotypes. Furthermore, we emphasize the importance of studying ecologically relevant traits and natural or semi-natural conditions to verify whether the results obtained are representative of the ecological and evolutionary processes in the field. Here, we will review what we currently know about thermal adaptation and the role of different stress responses to thermal challenges in insects, particularly Drosophila. Furthermore, we address some key questions that require future attention.},
	language = {en},
	number = {3},
	urldate = {2013-08-15},
	journal = {Journal of Biosciences},
	author = {Sørensen, Jesper G. and Loeschcke, Volker},
	month = apr,
	year = {2007},
	keywords = {Biomedicine general, Cell Biology, Drosophila, heat shock proteins, Life Sciences, general, Microbiology, Plant Sciences, stress resistance traits, thermal adaptation, Zoology},
	pages = {447--456},
	file = {Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/V2PRZSWV/s12038-007-0044-x.html:text/html;Sorensen and Loeschcke, 2007.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/CN3DUVG2/Sorensen and Loeschcke, 2007.pdf:application/pdf}
},

@article{muturi_temperature-mediated_2012,
	title = {Temperature-Mediated Differential Expression of Immune and Stress-Related Genes in Aedes aegypti Larvae},
	volume = {28},
	issn = {8756-{971X}},
	url = {http://www.bioone.org/doi/abs/10.2987/11-6194R.1},
	doi = {10.2987/11-6194R.1},
	number = {2},
	urldate = {2013-08-15},
	journal = {Journal of the American Mosquito Control Association},
	author = {Muturi, Ephantus J. and Nyakeriga, Alice and Blackshear, Millon},
	month = jun,
	year = {2012},
	pages = {79--83},
	annote = {Encore un ****** de journal closed-access :(},
	file = {BioOne Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/4UUNKBPE/11-6194R.html:text/html}
},

@article{doucet_bugs_2009,
	title = {The bugs that came in from the cold: molecular adaptations to low temperatures in insects},
	volume = {66},
	issn = {1420-{682X}, 1420-9071},
	shorttitle = {The bugs that came in from the cold},
	url = {http://link.springer.com/article/10.1007/s00018-009-8320-6},
	doi = {10.1007/s00018-009-8320-6},
	abstract = {The widespread distribution of insects over many ecological niches is a testimony to their evolutionary success. The colonization of environments at high latitudes or altitudes required the evolution of biochemical strategies that reduced the impact of cold or freezing stress. This review focuses on our current interests in some of the genes and proteins involved in low temperature survival in insects. Although the most widespread form of protection is the synthesis of low molecular weight polyol cryoprotectants, proteins with intrinsic protective properties, such as the thermal hysteresis or antifreeze proteins are also important. These have been cloned and characterized in certain moths and beetles. Molecular techniques allowing the isolation of genes differentially regulated by low temperatures have revealed that heat shock proteins, cold stress proteins, membrane protectants, as well as ice nucleators and other less well characterized proteins likely also play a role in cold hardiness.},
	language = {en},
	number = {8},
	urldate = {2013-08-15},
	journal = {Cellular and Molecular Life Sciences},
	author = {Doucet, D. and Walker, V. K. and Qin, W.},
	month = apr,
	year = {2009},
	keywords = {Biochemistry, general, Biomedicine general, Cell Biology, cold hardening, freeze avoidance, freeze tolerance, Insect, Life Sciences, general, molecular adaptation},
	pages = {1404--1418},
	file = {Doucet et al, 2009.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/8373SZV6/Doucet et al, 2009.pdf:application/pdf;Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/J8EKDQDQ/s00018-009-8320-6.html:text/html}
},

@article{lencioni_thermal_2013,
	title = {Thermal stress induces {HSP70} proteins synthesis in larvae of the cold stream non-biting midge Diamesa cinerella Meigen},
	volume = {83},
	copyright = {© 2013 Wiley Periodicals, Inc.},
	issn = {1520-6327},
	url = {http://onlinelibrary.wiley.com/doi/10.1002/arch.21088/abstract},
	doi = {10.1002/arch.21088},
	abstract = {Laboratory experiments on the cold stenothermal midge Diamesa cinerella (Diptera, Chironomidae) were performed to study the relationship between increasing temperature and heat shock proteins ({HSP70)} expression at translational level (Western blotting). Thermotolerance of {IV} instar larvae collected in nature at {1.5–4.3°C} during seasons was analyzed through short-term (1 h at ten different temperatures from {26°C} to {35°C)} and long-term (1–14 h at {26°C} and 1–4 h at {32°C)} heat shocks. A high thermotolerance was detected ({LT50} = {30.9–32.8°C} and {LT100} = {34.0–37.8°C).} However, survival decreased consistently with increasing exposure time, especially at higher temperature ({LTime50} = 7.64 h at {26°C} and {LTime50} = 1.73 h at {32°C).} The relationship between such heat resistance and {HSP70} expression appeared evident because a relationship between {HSP70} level and larval survival rate was generally found. A heat shock response ({HSR)} was consistent only in the summer larvae. The absence of {HSR} in the other populations coupled with even higher amounts of {HSP70} than in summer, led us to hypothesize that other macromolecules and other adaptive mechanisms, apart from biochemical ones, are involved in the response of D. cinerella larvae to high temperature. Altogether these results stressed how in this midge the {HSP70} protein family confers resistance against cold, being detected under natural conditions in control larvae collected in all seasons, but also against warm under experimental heat shocks. These results give new insights into possible responses to climate changes in freshwater insects within the context of global warming.},
	language = {en},
	number = {1},
	urldate = {2013-08-15},
	journal = {Archives of Insect Biochemistry and Physiology},
	author = {Lencioni, Valeria and Bernabò, Paola and Cesari, {MicheleRebecchi}, Lorena and Cesari, Michele},
	year = {2013},
	keywords = {Alps, chironomids, freshwater insects, heat shock, thermotolerance},
	pages = {1–14},
	file = {Lencioni et al, 2013.pdf:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/UJCNVPDJ/Lencioni et al, 2013.pdf:application/pdf;Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/NMKDUXEB/abstract.html:text/html}
},

@article{ismaeil_trans-generational_2013,
	title = {Trans-Generational Effects of Mild Heat Stress on the Life History Traits of an Aphid Parasitoid},
	volume = {8},
	url = {http://dx.doi.org/10.1371/journal.pone.0054306},
	doi = {10.1371/journal.pone.0054306},
	abstract = {Temperature changes are common in nature and insects are particularly exposed and sensitive to such variations which can be potential stresses, ultimately affecting life history traits and overall fitness. Braconids have been widely used to study the effects of temperature on host-parasitoid interactions and the present work focused on the solitary endoparasitoid Aphidius ervi Haliday (Hymenoptera: Braconidae Aphidiidae), an efficient biological control agent commercially used against aphids such as the potato aphid Macrosiphum euphorbiae Thomas (Sternorrhyncha: Aphididae). Contrary to previous studies using heat shocks at extreme temperatures, we evaluated the effects of mild heat stresses by transferring young parasitoid adults from the constant temperature of {20°C} to either a warm ({25°C)} or hot ({28°C)} temperature, for either 1 h or 48 h. Such treatments are consistent with situations commonly experienced by parasitoids when moved from their rearing conditions to greenhouses or field conditions. The effects were evaluated both on the heat stressed A. ervi adults (G0) (immediate effects) and on their first generation (G1) progeny (trans-generational effects). G0 wasps' mortality was significantly affected by the temperature in interaction with the duration of the stress. Longevity of G0 wasps surviving the heat stress was negatively affected by the temperature and females lived longer than males. Heat stress applied to A. ervi parents also had consequences on their G1 progeny whose developmental time, rates of mummification and percentage of parasitoid completing total development were negatively affected. Surprisingly, the egg load at emergence of the G1 female progeny was increased when their mothers had been submitted to a mild heat stress of {25°C} or {28°C.} These results clearly demonstrate trans-generational phenotypic plasticity, showing that adaptation to thermal stresses may be achieved via maternal effects. This study also sheds light on the complexity of insect responses and underlying mechanisms to fluctuating conditions in their natural environment.},
	number = {2},
	urldate = {2013-08-15},
	journal = {{PLoS} {ONE}},
	author = {Ismaeil, Ibrahim and Doury, Géraldine and Desouhant, Emmanuel and Dubois, Françoise and Prevost, Geneviève and Couty, Aude},
	month = feb,
	year = {2013},
	pages = {e54306},
	file = {PLoS Full Text PDF:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/Q9B8BDDI/Ismaeil et al. - 2013 - Trans-Generational Effects of Mild Heat Stress on .pdf:application/pdf;PLoS Snapshot:/home/ego/.mozilla/firefox/e94dk8of.default/zotero/storage/GVADFF3N/journal.pone.html:text/html}
}


text:
require module-init-tools.inc

SRC_URI = "${KERNELORG_MIRROR}/pub/linux/utils/kernel/module-init-tools/module-init-tools-${PV}.tar.bz2 \
"
EXTRA_OECONF += "--disable-builddir"

bindir = "/bin"
sbindir = "/sbin"

do_configure_prepend() {
	sed -i -e /MAN5\ =/d -e /MAN8\ =/d Makefile.am
}

do_install() {
	autotools_do_install
	for f in bin/lsmod sbin/insmod sbin/rmmod sbin/modprobe sbin/modinfo sbin/depmod; do
		mv ${D}/$f ${D}/$f.26
	done
}

pkg_postinst_module-init-tools() {
#!/bin/sh
for f in sbin/insmod sbin/modprobe sbin/rmmod sbin/modinfo; do
bn=`basename $f`
   update-alternatives --install /$f $bn /$f.26 60
done
update-alternatives --install /bin/lsmod bin-lsmod /bin/lsmod.26 60
update-alternatives --install /sbin/lsmod lsmod /bin/lsmod.26 60
}

pkg_prerm_module-init-tools() {
#!/bin/sh
for f in sbin/insmod sbin/modprobe sbin/rmmod sbin/modinfo; do
bn=`basename $f`
   update-alternatives --remove $bn /$f.26
done
update-alternatives --remove bin-lsmod /bin/lsmod.26
update-alternatives --remove lsmod /bin/lsmod.26
}

pkg_postinst_module-init-tools-depmod() {
#!/bin/sh
update-alternatives --install /sbin/depmod depmod /sbin/depmod.26 60
}

pkg_prerm_module-init-tools-depmod() {
#!/bin/sh
update-alternatives --remove depmod /sbin/depmod.26
}
SRC_URI[md5sum] = "8b2257ce9abef74c4a44d825d23140f3"
SRC_URI[sha256sum] = "d012ab07ea26721467a85a775f34747c1c8897e37f16bec5317d8a72ef8b4f17"


text:
require vte.inc
EXTRA_OECONF = "--with-gnutls"
SRC_URI[archive.md5sum] = "95b0d12864f7374128da33998e756e75"
SRC_URI[archive.sha256sum] = "d5ae72dddd57af493afa10ca2a290f284e588021b0bd8aaaa63dbb75de7c0567"

repository: nicepixels/citadel

repo_name: nicepixels/citadel


text:
% This file was created with JabRef 2.9b2.
% Encoding: UTF8

@MISC{msgpack,
  author = {Sadayuki Furuhash},
  title = {MessagePack - It's like JSON but fast and small.},
  year = {2013},
  owner = {dietmarw},
  quality = {1},
  timestamp = {2013.12.10},
  url = {http://msgpack.org/}
}

@MISC{JSON,
  author = {JSON},
  title = {JavaScript Object Notation},
  year = {2013},
  owner = {dietmarw},
  quality = {1},
  timestamp = {2013.12.08},
  url = {http://www.json.org/}
}

@MISC{BJSON,
  author = {Pietrzak Roman},
  title = {Binary-JSON (BJSON) format specification},
  year = {2013},
  owner = {dietmarw},
  quality = {1},
  timestamp = {2013.12.10},
  url = {http://bjson.org/}
}

repository: dietmarw/recon

repo_name: dietmarw/recon