text:
@article{Xie-2018-eDNA-based,
    title = "eDNA-based bioassessment of coastal sediments impacted by an oil spill",
    author = "Xie, Yuwei  and
      Zhang, Xiaowei  and
      Yang, Jianghua  and
      Kim, Seonjin  and
      Hong, Seongjin  and
      Giesy, John P.  and
      Yim, Un Hyuk  and
      Shim, Won Joon  and
      Yu, Hongxia  and
      Khim, Jong Seong",
    journal = "Environmental Pollution, Volume 238",
    volume = "238",
    year = "2018",
    publisher = "Elsevier BV",
    url = "https://aclanthology.org/G18-132001",
    doi = "10.1016/j.envpol.2018.02.081",
    pages = "739--748",
    abstract = "Oil spills offshore can cause long-term ecological effects on coastal marine ecosystems. Despite their important ecological roles in the cycling of energy and nutrients in food webs, effects on bacteria, protists or arthropods are often neglected. Environmental DNA (eDNA) metabarcoding was applied to characterize changes in the structure of micro- and macro-biota communities of surface sediments over a 7-year period since the occurrence of Hebei Spirit oil spill on December 7, 2007. Alterations in diversities and structures of micro- and macro-biota were observed in the contaminated area where concentrations of polycyclic aromatic hydrocarbons were greater. Successions of bacterial, protists and metazoan communities revealed long-term ecological effects of residual oil. Residual oil dominated the largest cluster of the community-environment association network. Presence of bacterial families (Aerococcaceae and Carnobacteriaceae) and the protozoan family (Platyophryidae) might have conferred sensitivity of communities to oil pollution. Hydrocarbon-degrading bacterial families (Anaerolinaceae, Desulfobacteraceae, Helicobacteraceae and Piscirickettsiaceae) and algal family (Araphid pennate) were resistant to adverse effects of spilt oil. The protistan family (Subulatomonas) and arthropod families (Folsomia, Sarcophagidae Opomyzoidea, and Anomura) appeared to be positively associated with residual oil pollution. eDNA metabarcoding can provide a powerful tool for assessing effects of anthropogenic pollution, such as oil spills on sediment communities and its long-term trends in coastal marine environments.",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications


text:
@article{Mehdi-2019-Multiple,
    title = "Multiple Stressors in the Environment: The Effects of Exposure to an Antidepressant (Venlafaxine) and Increased Temperature on Zebrafish Metabolism",
    author = "Mehdi, Hossein  and
      Bragg, Leslie M.  and
      Servos, Mark R.  and
      Craig, Paul M.",
    journal = "Frontiers in Physiology, Volume 10",
    volume = "10",
    year = "2019",
    publisher = "Frontiers Media SA",
    url = "https://aclanthology.org/G19-114001",
    doi = "10.3389/fphys.2019.01431",
}

license_type: permissive

branch_name: refs/heads/main

gha_language: Python

extension: bib


text:
@article{santi_complete_2020,
 abstract = {Here, we report the complete genome of piscine Streptococcus agalactiae 01173 serotype Ia, which was generated using long-read sequencing technology. The bacteria were isolated from wild ﬁsh displaying signs of streptococcosis, from a ﬁsh kill incident in Kuwait.},
 author = {Santi, Morena and Egan, Sharon A. and Leigh, James A. and Verner-Jeffreys, David W. and Blanchard, Adam M.},
 doi = {10.1128/MRA.00674-20},
 editor = {Dunning Hotopp, Julie C.},
 file = {Santi et al. - 2020 - Complete Genome Sequence of Streptococcus agala.pdf:/Users/adam/Zotero/storage/5SSFX8XF/Santi et al. - 2020 - Complete Genome Sequence of Streptococcus agala.pdf:application/pdf},
 issn = {2576-098X},
 journal = {Microbiology Resource Announcements},
 language = {en},
 month = {September},
 number = {36},
 pages = {e00674--20, /mra/9/36/MRA.00674--20.atom},
 title = {Complete Genome Sequence of Streptococcus agalactiae Strain 01173, Isolated from Kuwaiti Wild Fish},
 url = {https://mra.asm.org/content/9/36/e00674-20},
 urldate = {2020-09-07},
 volume = {9},
 year = {2020}
}

license: MIT

repository: addyblanch/website

repo_name: addyblanch/website


text:
SUMMARY = "kodi inputstream addon for rtmp"

LICENSE = "GPLv2+"
LIC_FILES_CHKSUM = "file://${COMMON_LICENSE_DIR}/GPL-2.0-only;md5=801f80980d171dd6425610833a22dbe6"

inherit kodi-addon

DEPENDS += "expat"

SRCREV = "${AUTOREV}"

PV = "2.0.9+gitr${SRCPV}"

KODIADDONBRANCH = "Leia"

SRC_URI = "git://github.com/xbmc/inputstream.rtmp.git;protocol=https;branch=${KODIADDONBRANCH} \
         "

S = "${WORKDIR}/git"

KODIADDONNAME = "inputstream.rtmp"

repository: neutrino-hd/meta-neutrino

repo_name: neutrino-hd/meta-neutrino

branch_name: refs/heads/master

gha_language: BitBake

extension: bb


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}

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    margin-bottom: 52px;
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}

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  .u-section-4 .u-sheet-1 {
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    width: 540px;
    height: 474px;
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    width: 540px;
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    padding-left: 20px;
    padding-right: 20px;
    padding-bottom: 28px;
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    margin-top: 0;
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}

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    font-size: 1.875rem;
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}

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}

.u-section-5 .u-container-layout-2 {
  padding: 30px;
}

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}

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  letter-spacing: 0px;
  font-size: 1.25rem;
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  text-transform: none;
  padding: 15px 30px;
}

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  height: 20px;
  width: 20px;
  background-image: none;
}

.u-section-5 .u-accordion-pane-3 {
  min-height: 150px;
}

.u-section-5 .u-container-layout-3 {
  padding: 30px;
}

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  margin-top: 0;
}

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}

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}

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  min-height: 180px;
}

.u-section-5 .u-container-layout-4 {
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}

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  margin: 0;
}

.u-section-5 .u-btn-2 {
  padding: 0;
}

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    width: 720px;
    font-size: 3rem;
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  .u-section-5 .u-text-2 {
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    width: 540px;
  }
}

@media (max-width: 575px) {
  .u-section-5 .u-text-2 {
    width: 340px;
    font-size: 2.25rem;
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  .u-section-5 .u-accordion-1 {
    width: 340px;
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}

gha_license_id: MIT

gha_language: CSS

extension: css


text:
body {
  background-color: #f9f9f9;
}

body .main-section {
  min-height: 600px;
}

body .landing-page {
  min-height: 600px;
}

.logo {
  width: 136px;
  height: 100px;
  padding-left: 0;
  margin-right: 20px;
}

.logo img {
  display: block;
  width: 100%;
  height: auto;
  max-height: 100%;
}

.headline {
  padding: 3rem 1.5rem;
}

/*# sourceMappingURL=data:application/json;charset=utf-8;base64,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 */

repository: waylay/spa-recepies

repo_name: waylay/spa-recepies


text:
@article{vanpaemel_constructing_2011,
	title = {Constructing informative model priors using hierarchical methods},
	volume = {55},
	issn = {00222496},
	url = {http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.elsevier-27c56527-2ff3-37b5-b85e-fe1a442e7dc4},
	doi = {10.1016/j.jmp.2010.08.005},
	pages = {106--117},
	number = {1},
	journaltitle = {Journal of Mathematical Psychology},
	author = {Vanpaemel, Wolf},
	urldate = {2014-08-15},
	date = {2011-02},
	langid = {english}
}

repository: pmean/build-website

repo_name: pmean/build-website


text:
@book{russell2016artificial,
  title={Artificial intelligence: a modern approach},
  author={Russell, Stuart J and Norvig, Peter},
  year={2016},
  publisher={Malaysia; Pearson Education Limited,}
}

@misc{csen901,
  author        = {Ismail, Haythem O. and Ehab, Nourhan},
  title         = {\textit{Lecture notes in Introduction to Artificial Intelligence}},
  note          = "URL: \url{http://met.guc.edu.eg/Courses/CourseEdition.aspx?crsEdId=951}.",
  month         = {September},
  year          = {2019},
  publisher     ={German University in Cairo}
}

@misc{aimajava,
  author = {Russell, Stuart J and Norvig, Peter},
  title = {\textit{Java implementation of algorithms from Russell And Norvig's "Artificial Intelligence - A Modern Approach"}},
  year = {2007},
  publisher = {GitHub},
  journal = {GitHub repository},
  howpublished = {\url{https://github.com/aimacode/aima-java}},
}

@misc{aimapython,
  author = {Russell, Stuart J and Norvig, Peter},
  title = {\textit{Python implementation of algorithms from Russell And Norvig's "Artificial Intelligence - A Modern Approach"}},
  year = {2007},
  publisher = {GitHub},
  journal = {GitHub repository},
  howpublished = {\url{https://github.com/aimacode/aima-python}},
}

@misc{EndGameVisualizer,
  author = {El Sayed, Omar},
  title = {\textit{Unity Application for visualizing the output solution used in Avenger's End Game}},
  year = {2019},
  publisher = {GitHub},
  journal = {GitHub repository},
  howpublished = {\url{https://github.com/omarelsayed97/EndGameVisualizer}},
}

repository: AmrMKayid/IAmIronMan

repo_name: AmrMKayid/IAmIronMan


text:
SUMMARY = "User DBUS object"
DESCRIPTION = "User DBUS object"
HOMEPAGE = "http://github.com/openbmc/phosphor-networkd"
PR = "r1"

inherit obmc-phosphor-license
inherit obmc-phosphor-user-mgmt
inherit obmc-phosphor-systemd

RDEPENDS_${PN} += "python-dbus python-pygobject python-pexpect"

SRC_URI += "git://github.com/openbmc/phosphor-networkd"

SRCREV = "448e8d839d37532d2667b9a38bb3aadb6c804e2e"

S = "${WORKDIR}/git"
INSTALL_NAME = "userman.py"

do_install() {
echo "***installing $INSTALL_NAME"
        install -d ${D}/${sbindir}
        install ${S}/${INSTALL_NAME} ${D}/${sbindir}/obmc-phosphor-userd
}


text:
SUMMARY = "A GObject library to create cabinet files"
HOMEPAGE = "https://gitlab.gnome.org/GNOME/gcab"
LICENSE = "LGPL-2.1-only"
LIC_FILES_CHKSUM = "file://COPYING;md5=4fbd65380cdd255951079008b364516c"

DEPENDS = "glib-2.0"

SRC_URI = "\
    ${GNOME_MIRROR}/gcab/${PV}/gcab-${PV}.tar.xz \
    file://run-ptest \
"
SRC_URI[sha256sum] = "67a5fa9be6c923fbc9197de6332f36f69a33dadc9016a2b207859246711c048f"

inherit gobject-introspection gtk-doc manpages meson ptest-gnome vala

PACKAGECONFIG ??= "\
    ${@bb.utils.contains('USE_NLS', 'yes', 'nls', '', d)} \
    ${@bb.utils.contains('PTEST_ENABLED', '1', 'tests', '', d)} \
"
PACKAGECONFIG[manpages] = ""
PACKAGECONFIG[nls] = "-Dnls=true,-Dnls=false"
PACKAGECONFIG[tests] = "-Dtests=true -Dinstalled_tests=true,-Dtests=false -Dinstalled_tests=false"

BBCLASSEXTEND = "native"

repository: openembedded/meta-openembedded

repo_name: openembedded/meta-openembedded


text:
@InProceedings{meshi15,
  supplementary = {Supplementary:meshi15-supp.pdf},
  title = {{Efficient Training of Structured SVMs via Soft Constraints}},
  author = {Meshi, Ofer and Srebro, Nathan and Hazan, Tamir},
  pages = {699-707},
  abstract = {Structured output prediction is a powerful framework for jointly predicting interdependent output labels. Learning the parameters of structured predictors is a central task in machine learning applications. However, training the model from data often becomes computationally expensive. Several methods have been proposed to exploit the model structure, or decomposition, in order to obtain efficient training algorithms. In particular, methods based on linear programming relaxation, or dual decomposition, decompose the prediction task into multiple simpler prediction tasks and enforce agreement between overlapping predictions. In this work we observe that relaxing these agreement constraints and replacing them with soft constraints yields a much easier optimization problem. Based on this insight we propose an alternative training objective, analyze its theoretical properties, and derive an algorithm for its optimization. Our method, based on the Frank-Wolfe algorithm, achieves significant speedups over existing state-of-the-art methods without hurting prediction accuracy.},
}

repository: mreid/papersite

repo_name: mreid/papersite

gha_language: TeX


text:
@article{RN1116,
 author = {Melsew, Y. A. and Cheng, A. C. and McBryde, E. S. and Denholm, J. T. and Tay, E. and Ragonnet, R. and Trauer, J. M.},
 doi = {10.1183/13993003.00353-2019},
 issn = {1399-3003 (Electronic)
0903-1936 (Linking)},
 journal = {Eur Respir J},
 title = {Profiles of tuberculosis disease activation among contacts of patients with tuberculosis},
 type = {Journal Article},
 url = {https://www.ncbi.nlm.nih.gov/pubmed/31164436},
 year = {2019}
}


text:
file(REMOVE_RECURSE
  "CMakeFiles/iir_static.dir/iir/Biquad.cpp.o"
  "CMakeFiles/iir_static.dir/iir/Butterworth.cpp.o"
  "CMakeFiles/iir_static.dir/iir/Cascade.cpp.o"
  "CMakeFiles/iir_static.dir/iir/ChebyshevI.cpp.o"
  "CMakeFiles/iir_static.dir/iir/ChebyshevII.cpp.o"
  "CMakeFiles/iir_static.dir/iir/Custom.cpp.o"
  "CMakeFiles/iir_static.dir/iir/PoleFilter.cpp.o"
  "CMakeFiles/iir_static.dir/iir/RBJ.cpp.o"
  "CMakeFiles/iir_static.dir/iir/State.cpp.o"
  "libiir_static.a"
  "libiir_static.pdb"
)

# Per-language clean rules from dependency scanning.
foreach(lang CXX)
  include(CMakeFiles/iir_static.dir/cmake_clean_${lang}.cmake OPTIONAL)
endforeach()

repository: alexbordat/PFE

repo_name: alexbordat/PFE

extension: cmake


text:
@article{marien_movement_2018,
	title = {Movement {Patterns} of {Small} {Rodents} in {Lassa} {Fever}-{Endemic} {Villages} in {Guinea}},
	volume = {15},
	issn = {1612-9210},
	url = {10.1007/s10393-018-1331-8},
	doi = {10.1007/s10393-018-1331-8},
	abstract = {The Natal multimammate mouse (Mastomys natalensis) is the reservoir host of Lassa arenavirus, the etiological agent of Lassa fever in humans. Because there exists no vaccine for human use, rodent control and adjusting human behavior are currently considered to be the only options for Lassa fever control. In order to develop efficient rodent control programs, more information about the host's ecology is needed. In this study, we investigated the spatial behavior of M. natalensis and other small rodents in two capture-mark-recapture and four dyed bait (Rhodamine B) experiments in Lassa fever-endemic villages in Upper Guinea. During the capture-mark-recapture studies, 23\% of the recaptured M. natalensis moved between the houses and proximate fields. While M. natalensis was found over the entire study grid (2 ha), other rodent species (Praomys daltoni, Praomys rostratus, Lemniscomys striatus, Mus spp.) were mostly trapped in the surrounding fields. Distances between recapture occasions never exceeded 100 m for all rodent species. During the dyed bait experiments, 11\% of M. natalensis and 41\% of P. daltoni moved from the fields to houses. We conclude that commensal M. natalensis easily moves between houses and proximate fields in Guinea. We therefore consider occasional domestic rodent elimination to be an unsustainable approach to reduce Lassa virus transmission risk to humans, as M. natalensis is likely to reinvade houses quickly from fields in which rodents are not controlled. A combination of permanent rodent elimination with other control strategies (e.g., make houses rodent proof or attract predators) could be more effective for Lassa fever control, but must be further investigated.},
	language = {eng},
	number = {2},
	journal = {EcoHealth},
	author = {Mariën, Joachim and Kourouma, Fodé and Magassouba, N'Faly and Leirs, Herwig and Fichet-Calvet, Elisabeth},
	year = {2018},
	pmid = {29572697},
	keywords = {*Disease Reservoirs/vi [Virology], *Lassa Fever/ep [Epidemiology], *Lassa Fever/ve [Veterinary], *Rodent Control/og [Organization \& Administration], *Rodent Diseases/vi [Virology], Animals, Capture-mark-recapture, Disease Reservoirs, Endemic Diseases, Guinea, Humans, Lassa Fever, Lassa Fever/pc [Prevention \& Control], Lassa virus, Mastomys natalensis, Rhodamine B, Rodent control, Rodent Control, Rodent Diseases, Spatial Analysis},
	pages = {348--359},
	file = {Accepted Version:C\:\\Users\\ucbtds4\\Zotero\\storage\\458NIJC8\\Mariën et al. - 2018 - Movement Patterns of Small Rodents in Lassa Fever-.pdf:application/pdf}
}

@article{olayemi_new_2016,
	title = {New {Hosts} of {The} {Lassa} {Virus}},
	volume = {6},
	copyright = {2016 The Author(s)},
	issn = {2045-2322},
	url = {10.1038/srep25280},
	doi = {10.1038/srep25280},
	abstract = {Lassa virus (LASV) causes a deadly haemorrhagic fever in humans, killing several thousand people in West Africa annually. For 40 years, the Natal multimammate rat, Mastomys natalensis, has been assumed to be the sole host of LASV. We found evidence that LASV is also hosted by other rodent species: the African wood mouse Hylomyscus pamfi in Nigeria, and the Guinea multimammate mouse Mastomys erythroleucus in both Nigeria and Guinea. Virus strains from these animals were isolated in the BSL-4 laboratory and fully sequenced. Phylogenetic analyses of viral genes coding for glycoprotein, nucleoprotein, polymerase and matrix protein show that Lassa strains detected in M. erythroleucus belong to lineages III and IV. The strain from H. pamfi clusters close to lineage I (for S gene) and between II \& III (for L gene). Discovery of new rodent hosts has implications for LASV evolution and its spread into new areas within West Africa.},
	language = {en},
	number = {1},
	urldate = {2020-10-21},
	journal = {Scientific Reports},
	author = {Olayemi, Ayodeji and Cadar, Daniel and Magassouba, N’Faly and Obadare, Adeoba and Kourouma, Fode and Oyeyiola, Akinlabi and Fasogbon, Samuel and Igbokwe, Joseph and Rieger, Toni and Bockholt, Sabrina and Jérôme, Hanna and Schmidt-Chanasit, Jonas and Garigliany, Mutien and Lorenzen, Stephan and Igbahenah, Felix and Fichet, Jean-Nicolas and Ortsega, Daniel and Omilabu, Sunday and Günther, Stephan and Fichet-Calvet, Elisabeth},
	month = may,
	year = {2016},
	note = {Number: 1
Publisher: Nature Publishing Group},
	keywords = {*Host Specificity, *Lassa virus/ip [Isolation \& Purification], *Lassa virus/ph [Physiology], *Murinae/vi [Virology], Africa, Afrotropical region, Animals, Diseases and disorders, fever, genes, Genotype, glycoproteins, Guinea, haemorrhagic fevers, hosts, human diseases, Hylomyscus pamfi, Hylomyscus pamfi (Muridae): [New record].    Mastomys erythroleucus (Muridae): [New record]., Land zones, Lassa virus/cl [Classification], Lassa virus/ge [Genetics], Mastomys erythroleucus [Viral diseases / Lassa virus /   New record] [Africa / West Africa / ]., matrix proteins, Microbial   diseases, molecular genetics, molecular taxonomy, new host records, Nigeria, nucleoproteins, Parasites diseases and disorders, phylogeny, Phylogeny, Sequence Analysis, DNA, taxonomy},
	pages = {25280},
	file = {Full Text PDF:C\:\\Users\\ucbtds4\\Zotero\\storage\\VMGKRHH4\\Olayemi et al. - 2016 - New Hosts of The Lassa Virus.pdf:application/pdf}
}

@article{olayemi_arenavirus_2016,
	title = {Arenavirus {Diversity} and {Phylogeography} of {Mastomys} natalensis {Rodents}, {Nigeria}},
	volume = {22},
	issn = {1080-6040},
	url = {10.3201/eid2204.150155},
	doi = {10.3201/eid2204.150155},
	abstract = {Mastomys natalensis rodents are natural hosts for Lassa virus
(LASV). Detection of LASV in 2 mitochondrial phylogroups of the rodent near the Niger
and Benue Rivers in Nigeria underlines the potential for LASV emergence in fresh
phylogroups of this rodent. A Mobala-like sequence was also detected in eastern
Nigeria.},
	number = {4},
	urldate = {2020-10-21},
	journal = {Emerging Infectious Diseases},
	author = {Olayemi, Ayodeji and Obadare, Adeoba and Oyeyiola, Akinlabi and Igbokwe, Joseph and Fasogbon, Ayobami and Igbahenah, Felix and Ortsega, Daniel and Asogun, Danny and Umeh, Prince and Vakkai, Innocent and Abejegah, Chukwuyem and Pahlman, Meike and Becker-Ziaja, Beate and Günther, Stephan and Fichet-Calvet, Elisabeth},
	month = apr,
	year = {2016},
	pmid = {26982388},
	pmcid = {PMC4806934},
	keywords = {*DNA, Mitochondrial/ge [Genetics], *Lassa Fever/ve [Veterinary], *Lassa virus/cl [Classification], *Murinae/vi [Virology], *Phylogeny, *RNA, Viral/ge [Genetics], Animals, arenaviruses, Cytochromes b/ge [Genetics], detection, Disease Reservoirs, Genetic Variation, geographical distribution, hemorrhagic fever, Host-Pathogen Interactions, hosts, human diseases, Humans, Lassa, Lassa Fever/ep [Epidemiology], Lassa Fever/tm [Transmission], Lassa Fever/vi [Virology], Lassa virus/ge [Genetics], Lassa virus/ip [Isolation \& Purification], lineages, Mastomys natalensis, Mitochondria/ch [Chemistry], Mitochondria/ge [Genetics], mitochondrial DNA, Murinae/cl [Classification], Murinae/ge [Genetics], Nigeria, Nigeria/ep [Epidemiology], nucleotide sequences, phylogeny, phylogeography, Phylogeography, phylogroups, reservoir hosts, Rodent Diseases/ep [Epidemiology], Rodent Diseases/vi [Virology], rodents, viruses, West Africa, wild animals, wildlife conservation, zoonoses, Zoonoses},
	pages = {694--697},
	file = {PubMed Central Full Text PDF:C\:\\Users\\ucbtds4\\Zotero\\storage\\A4AIDBGX\\Olayemi et al. - 2016 - Arenavirus Diversity and Phylogeography of Mastomy.pdf:application/pdf}
}

@article{safronetz_detection_2010,
	title = {Detection of {Lassa} {Virus}, {Mali}},
	volume = {16},
	issn = {1080-6040},
	url = {10.3201/eid1607.100146},
	doi = {10.3201/eid1607.100146},
	abstract = {To determine whether Lassa virus was circulating in southern Mali, we tested samples from small mammals from 3 villages, including Soromba, where in 2009 a British citizen probably contracted a lethal Lassa virus infection. We report the isolation and genetic characterization of Lassa virus from an area previously unknown for Lassa fever.},
	number = {7},
	urldate = {2020-10-21},
	journal = {Emerging Infectious Diseases},
	author = {Safronetz, David and Lopez, Job E. and Sogoba, Nafomon and Traore’, Sékou F. and Raffel, Sandra J. and Fischer, Elizabeth R. and Ebihara, Hideki and Branco, Luis and Garry, Robert F. and Schwan, Tom G. and Feldmann, Heinz},
	month = jul,
	year = {2010},
	pmid = {20587185},
	pmcid = {PMC3321918},
	keywords = {*Lassa virus/ip [Isolation \& Purification], Animals, Lassa virus/cl [Classification], Lassa virus/ge [Genetics], Mali, Murinae/vi [Virology]},
	pages = {1123--1126},
	file = {Safronetz et al. - 2010 - Detection of Lassa Virus, Mali.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\WF5I6QXC\\Safronetz et al. - 2010 - Detection of Lassa Virus, Mali.pdf:application/pdf}
}

@article{foronda_serological_2015,
	title = {Serological survey of antibodies to {Toxoplasma} gondii and {Coxiella} burnetii in rodents in north-western {African} islands ({Canary} {Islands} and {Cape} {Verde}).},
	volume = {82},
	issn = {0030-2465},
	url = {http://www.ojvr.org/index.php/ojvr/article/view/899/html},
	abstract = {Coxiella burnetii and Toxoplasma gondii are intracellular parasites that cause important reproductive disorders in animals and humans worldwide, resulting in high economic losses. The aim of the present study was to analyse the possible role of peridomestic small mammals in the maintenance and transmission of C. burnetii and T. gondii in the north-western African archipelagos of the Canary Islands and Cape Verde, where these species are commonly found affecting humans and farm animals. Between 2009 and 2013, 108 black rats (Rattus rattus) and 77 mice (Mus musculus) were analysed for the presence of Coxiella and Toxoplasma antibodies by enzyme-linked immunosorbent assay (ELISA) and indirect immunofluorescence (IFA), respectively. Our results showed a wide distribution of C. burnetii and T. gondii, except for T. gondii in Cape Verde, in both rodent species. The overall seroprevalence of C. burnetii antibodies was 12.4\%; 21.1\% for Cape Verde and 10.2\% for the Canary Islands. With respect to T. gondii, seropositive rodents were only observed in the Canary Islands, with an overall seroprevalence of 15\%. Considering the fact that both pathogens can infect a large range of hosts, including livestock and humans, the results are of public health and veterinary importance and could be used by governmental entities to manage risk factors and to prevent future cases of Q fever and toxoplasmosis.},
	language = {English},
	number = {1},
	journal = {Onderstepoort Journal of Veterinary Research},
	author = {Foronda, P. and Plata-Luis, J. and Castillo-Figueruelo, B. del and Fernandez-Alvarez, A. and Martin-Alonso, A. and Feliu, C. and Cabral, M. D. and Valladares, B.},
	year = {2015},
	note = {Place: South Africa},
	keywords = {*Coxiella burnetii/ip [Isolation \& Purification], *Mice, *Q Fever/ve [Veterinary], *Rats, *Rodent Diseases/ep [Epidemiology], *Toxoplasma/ip [Isolation \& Purification], *Toxoplasmosis, Animal/ep [Epidemiology], Animals, antibodies, Antibodies, Bacterial, Antibodies, Protozoan, bacterial diseases, Cabo Verde/ep [Epidemiology], domestic animals, ELISA, Enzyme-Linked Immunosorbent Assay, Fluorescent Antibody Technique, Indirect, government, health, immunofluorescence, infections, islands, livestock, losses, parasites, parasitoses, pathogens, Prevalence, protozoal infections, public health, Q fever, Q Fever/ep [Epidemiology], Q Fever/mi [Microbiology], reproductive disorders, rickettsial diseases, risk factors, Rodent Diseases/mi [Microbiology], Rodent Diseases/ps [Parasitology], Seroepidemiologic Studies, serological surveys, seroprevalence, small mammals, Spain/ep [Epidemiology], surveys, toxoplasmosis, Toxoplasmosis, Animal/ps [Parasitology], transmission, world},
	pages = {Art},
	file = {Foronda et al. - 2015 - Serological survey of antibodies to Toxoplasma gon.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\8IVYI4VI\\Foronda et al. - 2015 - Serological survey of antibodies to Toxoplasma gon.pdf:application/pdf}
}

@article{konecny_indications_2010,
	title = {Indications of higher diversity and abundance of small rodents in human-influenced {Sudanian} savannah than in the {Niokolo} {Koba} {National} {Park} ({Senegal}).},
	volume = {48},
	issn = {0141-6707},
	url = {http://www.blackwell-synergy.com/loi/aje},
	abstract = {Expansion of human activities in the Sudanian savannah is changing natural habitats together with their animal communities. The abundance and diversity of small mammal communities were investigated in human-influenced savannahs in close proximity to Niokolo Koba National Park (NKNP) in south-eastern Senegal and compared with those from NKNP. Two localities were sampled in natural and two in human-influenced areas during two dry and two rainy seasons. Total sampling effort was 5400 trap-nights. Ninety-eight individuals of eleven species were captured outside NKNP, while only 28 individuals of five rodent species were caught inside the park (all of which were found also outside NKNP). The most abundant species outside NKNP was Mastomys erythroleucus, while inside NKNP it was Praomys daltoni. Both relative abundance and diversity were significantly higher in human-influenced landscape than in natural savannahs of NKNP. The difference in species richness may be linked with lower population densities of certain species in NKNP and the effect of traditional agriculture, which may support the presence of species typical for deforested landscape. Furthermore, food availability, and predator abundances are discussed as possible reasons for the higher rodent abundances outside NKNP.},
	language = {English},
	number = {3},
	journal = {African Journal of Ecology},
	author = {Konecny, A. and Koubek, P. and Bryja, J.},
	year = {2010},
	note = {Place: UK},
	keywords = {food supply, grasslands, human activity, landscape, national parks, natural enemies, population density, predators, savannas, small mammals, species diversity, species richness},
	pages = {718--726},
	file = {Konecny et al. - 2010 - Indications of higher diversity and abundance of s.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\AQIKJUNW\\Konecny et al. - 2010 - Indications of higher diversity and abundance of s.pdf:application/pdf}
}

@article{angelici_patterns_2005,
	title = {Patterns of specific diversity and population size in small mammals from arboreal and ground-dwelling guilds of a forest area in southern {Nigeria}},
	volume = {265},
	issn = {0952-8369, 1469-7998},
	url = {10.1017/S0952836904005977},
	doi = {10.1017/S0952836904005977},
	abstract = {The small mammal fauna of a forest area in southern Nigeria is studied in order to understand the general patterns regulating the community composition. A set of different methods of trapping was used in order to evaluate the composition of the species at the level of both the ground-dwelling and the arboreal guilds. For the Insectivora, six shrew species were trapped, but only two (Crocidura nigeriae and C. poensis) appeared abundant and widespread in the various habitat types. No arboreal species were found. For the rodents, 17 species were captured, which were arranged by a Principal Component Analysis into four groups: (1) Rattus rattus and Anomalurus derbianus; (2) Xerus erythropus and Grammomys rutilans; (3) Graphiurus cf. murinus and Hylomyscus stella; (4) the remaining, more generalist species. For the ground-dwelling rodents, 14 species were found, which were arranged in three groups: (1) Malacomys edwardsi and Grammomys sp.; (2) Mylomys dybowskii and Rattus norvegicus; (3) all the other species, with stronger similarities between Praomys tullbergi, Mus musculoides, Aethomys sp. (unknown), and Lemniscomys striatus. Although an approximately equal number of species constituted the arboreal and grounddwelling rodent fauna, the number of trapped animals was much higher on the ground than at the level of the arboreal guild (ratio 8.7: 1; total n = 2322). The general implications of the patterns observed are discussed.},
	language = {en},
	number = {1},
	urldate = {2021-03-08},
	journal = {Journal of Zoology},
	author = {Angelici, Francesco M. and Luiselli, Luca},
	month = jan,
	year = {2005},
	pages = {9--16},
	file = {Angelici and Luiselli - 2005 - Patterns of specific diversity and population size.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\PDN4CRUZ\\Angelici and Luiselli - 2005 - Patterns of specific diversity and population size.pdf:application/pdf;patterns-of-specific-diversity-and-population-size-in-small-mammals-from-arboreal-and-ground-dwelling-guilds-of-a-forest-area-in-southern-nigeria (1).pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\P24WVNV8\\patterns-of-specific-diversity-and-population-size-in-small-mammals-from-arboreal-and-ground-dwelling-guilds-of-a-forest-area-in-southern-nigeria (1).pdf:application/pdf}
}

@article{dossou_invasive_2020,
	title = {Invasive rodents and damages to food stocks: a study in the {Autonomous} {Harbor} of {Cotonou}, {Benin}.},
	volume = {24},
	issn = {1370-6233},
	abstract = {Description of the subject. Rodents may be major pests to crops and stored food, thus threatening food security. Among them, invasive species such as rats and mice are of particular concern since they are disseminated globally following international trade. We investigated the small mammal assemblage within the international seaport of Cotonou, Benin, in order to determine the relative importance and distribution of native vs invasive rodent species, as well as to evaluate the amount and associated costs of rodent-induced damages on imported 'exported stored goods (here, rice). Objectives. Description of rodent assemblages within an African seaport, and evaluation of the associated damages on stored food stocks. Method. Rodent communities were described following trapping results while associated damages and costs were evaluated following a 25 days-long monitoring campaign and subsequent economic estimation of loss. Results. Our results show that invasive mice and rats are, from far, the most impacting rodents in the storage warehouses, and that the associated economic losses are quite large. Moreover, we point towards a few environmental management procedures that may greatly reduce the impact of rodents on stored goods. Conclusions. Damages and costs due to invasive rodents within the Cotonou Harbor are so that they justify financial investment in rodent population control.},
	number = {1},
	journal = {Biotechnologie Agronomie Societe et Environnement},
	author = {Dossou, Henri-Joel and Adjovi, Nestor Ahoyo and Houemenou, Gualbert and Bagan, Thomas and Mensah, Guy-Apollinaire and Dobigny, Gauthier},
	year = {2020},
	note = {ZOOREC:ZOOR15606039299},
	pages = {28--36},
	file = {Dossou et al. - 2020 - Invasive rodents and damages to food stocks a stu.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\DTGAV9WL\\Dossou et al. - 2020 - Invasive rodents and damages to food stocks a stu.pdf:application/pdf}
}

@article{garshong_effect_2013,
	title = {Effect of {Habitat} {Change} through {Infrastructural} {Development} on {Small} {Mammal} {Diversity} and {Abundance} on the {Legon} {Campus} of the {University} of {Ghana}.},
	volume = {21},
	url = {261041768},
	doi = {261041768},
	abstract = {The study investigated the effect of real estate development on small mammal diversity and abundance in order to inform town planners during their decision-making process. Small mammals were used because they are relatively easy to survey and serve as bio-indicators that provide knowledge on the state of health of the habitat in which they inhabit. The University of Ghana Campus, Legon (UGCL) was divided into two sites: built-up area and the botanical garden, which is less developed. The small mammals were live-trapped using Sherman traps in May 2009 for seven nights by means of transect in the two study sites, using a mixture of peanut butter and corn meal as the preferred bait. The 350 trap-nights yielded 68 captures of five species of small mammals. They were (i) Pygmy mouse (Mus musculoides), (ii) Unstriped grass rat (Arvicanthis niloticus), (iii) Tullberg's soft-furred rat (Praomys tullbergi), (iv) African giant shrew (Crocidura olivieri) and (v) White-bellied hedgehog (Atelerix albiventris). Small mammal diversity and abundance were similar between the two sites. This may be due to the comparatively large size and the presence of green areas in the built-up area. The preference of C. olivieri for human-interfered habitats may be used to monitor further habitat modification through real estate development in UGCL.},
	number = {2},
	journal = {West African Journal of Applied Ecology},
	author = {Garshong, R. A. and Attuquayefio, D. K. and Gbogbo, F.},
	year = {2013},
	note = {ZOOREC:ZOOR15104024746},
	pages = {1--9},
	file = {Garshong et al. - 2013 - Effect of Habitat Change through Infrastructural D.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\J8AMKYA7\\Garshong et al. - 2013 - Effect of Habitat Change through Infrastructural D.pdf:application/pdf}
}

@article{ivoke_studies_2009,
	title = {Studies on the seasonal variations and prevalence of helminth fauna of the black rat, {Rattus} rattus ({L}) ({Rodentia}: {Muridae}) from different microhabitats in {Nsukka}, {Nigeria}.},
	volume = {6},
	issn = {1597-3115},
	abstract = {A twelve-month epizootic survey was conducted to evaluate the helminth fauna of the Nigerian strain of the black rat, Rattus rattus from six microecological habitats in Nsukka area of Nigeria and to assess the zoonotic and public health implications of the findings. Altogether 1458 rats (56.5 \% ma/es and 43.5 \% females) were trapped and examined for helminths. A total of 1098 rats (55.7 \% ma/es and 44.3\% females) harboured helminth parasites thus providing and overall prevalence of 75.3\% and a mean worn burden 01.3. The between-sex difference was statistically significant =2.64, P {\textless} 0.05) with more ma/es (53.2 \%) than females (46.8 \%) harbouring helminth parasites. There was no marked variation in the infection pattern in the rat host from the different habitats, but the parasite prevalence and distribution appeared to be season-dependent. Parasites (n = 1469) recovered were of 3 helminth groups (nematodes 72.4\%, cestodes 27,5\%, and trematodes 0.6\%). Six nematode species identified were Nippostrongylus braziliensis (19.8\%), Aspicularis tetraptera (17.5\%), Syphacia muris 17,0 \%), Angiostrongy/us cantonensis 16.9\%), Strongy/oides ratti (16.0\%) and Capi//aria hepatica (12,8\%). Also recovered from their rat hosts were the following six cestode species; Hymenolepis diminuta (22,7\%), Taenia taeniaeformis (17.4\%), T. muris (17.1 \%), T. hydatigera (16.6\%), H. nana (16.4\%) and Raillietina muris (9.8\%), Trematodes (n=9) belonging to 3 species, Plagiochis muris, Platynosomoides muris and Corrigia muris were also recovered from five infected rats. A total of 103 rat hosts harboured single infections of nematodes, 818 (98.9\%) had combined nematode/cestode infections, 5 (6.0\%) haboured a combination of nematode/trematode whereas 4 (0.5\%) showed concurrent cestode/trematode infections The influence of seasonal fluctuations on the parasite-host relationship, life cycle patterns of the parasites and immunological potentials of the rat hosts are discussed.},
	number = {3},
	journal = {Animal Research International},
	author = {Ivoke, Njoku},
	month = dec,
	year = {2009},
	note = {ZOOREC:ZOOR14803026105},
	pages = {1063--1071},
	file = {Ivoke - 2009 - Studies on the seasonal variations and prevalence .pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\AL7KJUEL\\Ivoke - 2009 - Studies on the seasonal variations and prevalence .pdf:application/pdf}
}

@article{alimba_wild_2021,
	title = {Wild black rats ({Rattus} rattus {Linnaeus}, 1758) as zoomonitor of genotoxicity and systemic toxicity induced by hazardous emissions from {Abule} {Egba} unsanitary landfill, {Lagos}, {Nigeria}.},
	volume = {28},
	issn = {1614-7499},
	url = {10.1007/s11356-020-11325-7},
	doi = {10.1007/s11356-020-11325-7},
	abstract = {Wild black rats (Rattus rattus) inhabiting Abule Egba landfill (AEL) were used as zoomonitor to assess health risk associated with exposure to hazardous chemicals from landfills. Twenty five R. rattus (16 and 9) captured within AEL and 15 (9 and 6) (control) caught from Iyano Ipaja (10 km away from AEL) were examined for bone marrow micronucleated polychromatic erythrocytes (MNPCE) and polychromatic erythrocytes/normochromatic erythrocytes (PCE/NCE) ratio, abnormal sperm morphology, alterations in hematological indices and erythrocyte morphology, and histopathology of the viscera using standard protocols. There was significant (p {\textless} 0.05) increase in MNPCE but decrease PCE/NCE ratio in bone marrow cells of exposed rats than the reference site. MNPCE was insignificantly higher in male than females. Cauda epididymal sperms from exposed rats showed significant high frequency of teratozoospermia. Erythrocyte count, hemoglobin concentrations, percentage hematocrits, mean corpuscular hemoglobin concentrations, leucocyte count, and lymphocytes decreased while mean corpuscular volume, neutrophils, and mean corpuscular hemoglobin increased in the exposed rats compared to the control. Also, abnormal erythrocyte morphology: acanthocytes, codocytes (target cells), schizocytes, and tear drops significantly increased in the exposed rats. Marginal sexual dimorphism was observed between males and females in the incidence of hematological indices. Histopathological lesions including interstitial edema, hemorrhage, lymphoid depletion, cellular infiltrations, proliferation of the alveolar pneumocytes, necrosis, tissue degeneration, and reduced germinal epithelium were observed in the testes, liver, lungs, heart, kidney, and spleen from the exposed rats compared to the control. Some physicochemicals and metals analyzed in leachates from the landfill are capable of inducing genome instability and systemic toxicity in the exposed rats. Rattus rattus exposed to hazardous chemicals from AEL harbored somatic and germ cell mutations, and tissue damage compared to the control rats. We suggest that R. rattus are useful sentinel for genotoxicity and system toxicity assessment of landfill-polluted sites.Graphical abstract.},
	number = {9},
	journal = {Environmental science and pollution research international},
	author = {Alimba, Chibuisi G and Adewumi, Olusoji O and Binuyo, Olufisayo M and Odeigah, Peter G C},
	year = {2021},
	note = {Place: Germany
Alimba, Chibuisi G. Cell Biology and Genetics Unit, Department of Zoology, University of Ibadan, Ibadan, Nigeria. chivoptera@yahoo.com.
Alimba, Chibuisi G. Leibniz Research Centre for Working Environment and Human Factors (IfADo), Technical University of Dortmund, 44139, Dortmund, Germany. chivoptera@yahoo.com.
Alimba, Chibuisi G. Department of Cell Biology and Genetics, University of Lagos, Akoka, Lagos, Nigeria. chivoptera@yahoo.com.
Adewumi, Olusoji O. Department of Cell Biology and Genetics, University of Lagos, Akoka, Lagos, Nigeria.
Adewumi, Olusoji O. Biology Unit, Distance Learning Institute, University of Lagos, Akoka, Lagos State, Nigeria.
Binuyo, Olufisayo M. Department of Cell Biology and Genetics, University of Lagos, Akoka, Lagos, Nigeria.
Binuyo, Olufisayo M. Department of Theriogenology, Faculty of Veterinary Medicine, University of Ibadan, Ibadan, Nigeria.
Odeigah, Peter G C. Department of Cell Biology and Genetics, University of Lagos, Akoka, Lagos, Nigeria.},
	keywords = {*DNA Damage, *Sex Characteristics, Animals, Female, Kidney, Male, Nigeria, Rats, Waste Disposal Facilities},
	pages = {10603--10621},
	file = {Alimba et al. - 2021 - Wild black rats (Rattus rattus Linnaeus, 1758) as .pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\XT9Q9EU3\\Alimba et al. - 2021 - Wild black rats (Rattus rattus Linnaeus, 1758) as .pdf:application/pdf}
}

@article{kouadio_detection_2020,
	title = {Detection of possible spillover of a novel hantavirus in a {Natal} mastomys from {Guinea}.},
	volume = {56},
	issn = {1572-994X},
	url = {10.1007/s11262-019-01709-4},
	doi = {10.1007/s11262-019-01709-4},
	abstract = {To date, only two rodent-borne hantaviruses have been detected in sub-Saharan Africa. Here, we report the detection of a yet unknown hantavirus in a Natal mastomys (Mastomys natalensis) in Meliandou, Guinea, in 2014. The phylogenetic placement of this virus suggests that it might represent a cross-order spillover event from an unknown bat or eulipotyphlan host.},
	number = {1},
	journal = {Virus genes},
	author = {Kouadio, Leonce and Nowak, Kathrin and Couacy-Hymann, Emmanuel and Akoua-Koffi, Chantal and Dux, Ariane and Zimmermann, Fee and Allali, Bernard K and Kourouma, Laye and Bangoura, Karim and Koendgen, Sophie and Witkowski, Peter T and Kruger, Detlev H and Calvignac-Spencer, Sebastien and Leendertz, Fabian H},
	year = {2020},
	note = {Place: United States
Kouadio, Leonce. Robert Koch Institut, Berlin, Germany.
Kouadio, Leonce. LANADA/Central Laboratory for Animal Diseases, Bingerville, Cote d'Ivoire.
Nowak, Kathrin. Robert Koch Institut, Berlin, Germany.
Couacy-Hymann, Emmanuel. LANADA/Central Laboratory for Animal Diseases, Bingerville, Cote d'Ivoire.
Akoua-Koffi, Chantal. Universite Alassane Ouattara de Bouake, Bouake, Cote d'Ivoire.
Dux, Ariane. Robert Koch Institut, Berlin, Germany.
Zimmermann, Fee. Robert Koch Institut, Berlin, Germany.
Allali, Bernard K. Institut Pasteur de Cote D'Ivoire, Abidjan, Cote d'Ivoire.
Kourouma, Laye. Laboratoire Medical Guineo-Allemand, Conakry, Guinea.
Bangoura, Karim. Ministere de l'Elevage et des Productions Animales, Conakry, Guinea.
Koendgen, Sophie. Charite - University Medicine, Berlin, Germany.
Witkowski, Peter T. Charite - University Medicine, Berlin, Germany.
Kruger, Detlev H. Charite - University Medicine, Berlin, Germany.
Calvignac-Spencer, Sebastien. Robert Koch Institut, Berlin, Germany.
Leendertz, Fabian H. Robert Koch Institut, Berlin, Germany. leendertzf@rki.de.},
	keywords = {*Hantavirus Infections/ve [Veterinary], *Hantavirus/ip [Isolation \& Purification], *Murinae/vi [Virology], *Rodent Diseases/vi [Virology], Animals, Guinea, Hantavirus Infections/vi [Virology], Hantavirus/cl [Classification], Hantavirus/ge [Genetics], Phylogeny},
	pages = {95--98},
	file = {11262_2019_1709_MOESM1_ESM.docx:C\:\\Users\\ucbtds4\\Zotero\\storage\\UEBJFYN3\\11262_2019_1709_MOESM1_ESM.docx:application/vnd.openxmlformats-officedocument.wordprocessingml.document;Kouadio2020_Article_DetectionOfPossibleSpilloverOf.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\FWHHMJHW\\Kouadio2020_Article_DetectionOfPossibleSpilloverOf.pdf:application/pdf}
}

@article{mafiana_gastrointestinal_1997,
	title = {Gastrointestinal helminth parasites of the black rat ({Rattus} rattus) in {Abeokuta}, southwest {Nigeria}.},
	volume = {71},
	issn = {0022-149X},
	url = {10.1017/S0022149X00015947},
	doi = {10.1017/S0022149X00015947},
	abstract = {A survey of 612 black rats, Rattus rattus (282 mates and 330 females), for infections with helminth parasites was carried out in Abeokuta, in southwest Nigeria. Three hundred and ninety six (64.7\%) were infected with one or more of seven species of helminths comprising three cestodes (Hymenolepis diminuta, Taenia taeniaeformis (cyst) and Raillietina sp.) three nematodes (Mastophorus muris, Trichuris muris and Syphacia sp.) and one acanthocephalan (Moniliformis moniliformis). Although the prevalence of infection in males (76.6\%) was more than in females (54.5\%) (P{\textless}0.01), there was no difference in the mean intensity of infection, MI, (males=11.6+/-0.94, females=11.1+/-1.56). Among the different weight classes, rats of 100-130 g were more infected (893\%) and had the highest mean intensity (MI=21.6) than those that weighed {\textless}100 g (47.1\%, MI=6.4) and {\textgreater}130 g (73.9\%, MI=9.3). Moniliformis moniliformis was the most common species encountered (39.2\%) and had the highest mean intensity in both sexes (x=7.4+/-0.74). Considering the rat-man proximity, this finding has considerable public health implications.},
	number = {3},
	journal = {Journal of helminthology},
	author = {Mafiana, C F and Osho, M B and Sam-Wobo, S},
	year = {1997},
	note = {Place: England
Mafiana, C F. Department of Biological Sciences, University of Agriculture, Abeokuta, Ogun State, Nigeria.},
	keywords = {*Helminthiasis, Animal/tm [Transmission], *Helminths/ip [Isolation \& Purification], *Intestinal Diseases, Parasitic/ps [Parasitology], *Rats/ps [Parasitology], *Rodent Diseases/ps [Parasitology], Animals, Body Weight, Cestoda/ip [Isolation \& Purification], Female, Humans, Male, Moniliformis/ip [Isolation \& Purification], Nematoda/ip [Isolation \& Purification], Nigeria, Rodent Diseases/tm [Transmission]},
	pages = {217--20},
	file = {Mafiana et al. - 1997 - Gastrointestinal helminth parasites of the black r.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\5N3PGQZB\\Mafiana et al. - 1997 - Gastrointestinal helminth parasites of the black r.pdf:application/pdf}
}

@article{ikeh_mastomys_1995,
	title = {Mastomys natalensis and {Tatera} gambiana as probable reservoirs of human cutaneous leishmaniasis in {Nigeria}.},
	volume = {89},
	issn = {0035-9203},
	abstract = {Leishmania sp. was isolated from the livers and spleens of 4 of 56 Mastomys natalensis and one of 21 Tatera gambiana in Keana District, Nigeria; none of the rodents had cutaneous lesions. Parasites were not found in 42 Rattus rattus. Experimentally infected mice developed cutaneous lesions characteristic of L. major infection. The organisms could not be cultivated in vitro.},
	number = {1},
	journal = {Transactions of the Royal Society of Tropical Medicine and Hygiene},
	author = {Ikeh, E I and Ajayi, J A and Nwana, E J},
	year = {1995},
	note = {Place: England
Ikeh, E I. Department of Medical Microbiology, University of Jos, P.M.B., Nigeria.},
	keywords = {*Disease Reservoirs, *Leishmania major/ip [Isolation \& Purification], *Leishmaniasis, Cutaneous/tm [Transmission], *Muridae/ps [Parasitology], *Rodentia/ps [Parasitology], Animals, Liver/ps [Parasitology], Mice, Nigeria, Rats, Spleen/ps [Parasitology]},
	pages = {25--6},
	file = {Ikeh et al. - 1995 - Mastomys natalensis and Tatera gambiana as probabl.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\TRWBMAML\\Ikeh et al. - 1995 - Mastomys natalensis and Tatera gambiana as probabl.pdf:application/pdf}
}

@article{robbins_mastomys_1983,
	title = {Mastomys (rodentia: muridae) species distinguished by hemoglobin pattern differences.},
	volume = {32},
	issn = {0002-9637},
	abstract = {Hemoglobin electrophoresis patterns were found to be reliable markers for distinguishing two species of Mastomys in Sierra Leone having 32 and 38 chromosomes. All 32-chromosome animals exhibited a single hemoglobin pattern, whereas those with 38-chromosomes had four distinguishable patterns. Both karyotypes were present throughout Sierra Leone. The 38-chromosome species was more prevalent in the Guinea savanna zone to the north, while the 32-chromosome species was most dominant in human-modified high forest areas of the eastern and southern parts of the country. In almost all situations the 32-chromosome species was more common in houses than in bush habitats; the reverse was true for Mastomys having 38 chromosomes. Analysis of hemoglobin patterns thus becomes useful for species identification, and is necessary to understand the roles of the different Mastomys forms as reservoirs of human diseases, such as Lassa fever in West Africa.},
	number = {3},
	journal = {The American journal of tropical medicine and hygiene},
	author = {Robbins, C B and Krebs, J W Jr and Johnson, K M},
	year = {1983},
	note = {Place: United States},
	keywords = {*Hemoglobins/ge [Genetics], *Muridae/ge [Genetics], Animals, Chromosomes/an [Analysis], Hemoglobins/an [Analysis], Sierra Leone},
	pages = {624--30},
	file = {Robbins et al. - 1983 - Mastomys (rodentia muridae) species distinguished.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\3ADT4Y3S\\Robbins et al. - 1983 - Mastomys (rodentia muridae) species distinguished.pdf:application/pdf}
}

@article{diallo_bacteriological_1982,
	title = {Bacteriological survey of leptospirosis in {Zaria}, {Nigeria}.},
	volume = {34},
	issn = {0041-3232},
	abstract = {A total of 252 rodents were trapped in the environs of Ahmadu Bello University, Zaria, over a two-year period, of which 221 were brown field rats (Arvicanthus niloticus). Only these were found positive (4.5\%). Titers were detected against Leptospira interrogans, serovars australis, icterohaemorrhagiae, tarassovi and hardjo. All positive sera except one reacted against a single serovar. Eight isolates were obtained from field rats: five were serovar australis, one ballum and two unidentified. Five isolates were recovered from 74 bovine kidneys examined: one was serovar pyrogenes and four unidentified. One unidentified isolate failed to react with any of the 16 screening leptospira antisera and another was tentatively considered to be serovar ballum. Two isolates, one ballum and one unidentified, were recovered from the Kubani stream waters. No leptospira was isolated from piggery sewage effluents collected at Kano and Kaduna. It is suggested that serovar ballum be included in any screening battery for leptospirosis in man and animals in Nigeria.},
	number = {1},
	journal = {Tropical and geographical medicine},
	author = {Diallo, A A and Dennis, S M},
	year = {1982},
	note = {Place: Netherlands},
	keywords = {*Disease Reservoirs, *Leptospira interrogans/ip [Isolation \& Purification], *Leptospirosis/tm [Transmission], *Rodentia/mi [Microbiology], Animals, Arvicolinae/mi [Microbiology], Cattle Diseases/mi [Microbiology], Cattle Diseases/tm [Transmission], Cattle/im [Immunology], Cattle/mi [Microbiology], Disease Vectors, Gerbillinae/mi [Microbiology], Hedgehogs/mi [Microbiology], Kidney/mi [Microbiology], Leptospira interrogans/im [Immunology], Leptospirosis/im [Immunology], Leptospirosis/mi [Microbiology], Mice/mi [Microbiology], Muridae/mi [Microbiology], Nigeria, Rodent Diseases/mi [Microbiology], Rodent Diseases/tm [Transmission]},
	pages = {29--34},
	file = {Diallo and Dennis - 1982 - Bacteriological survey of leptospirosis in Zaria, .pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\6F5ZYHST\\Diallo and Dennis - 1982 - Bacteriological survey of leptospirosis in Zaria, .pdf:application/pdf}
}

@article{coe_mammalian_1975,
	title = {Mammalian ecological studies on {Mount} {Nimba}, {Liberia}.},
	volume = {39},
	issn = {0025-1461},
	url = {10.1515/mamm.1975.39.4.523},
	doi = {10.1515/mamm.1975.39.4.523},
	number = {4},
	journal = {Mammalia},
	author = {Coe, M},
	year = {1975},
	note = {Place: France},
	keywords = {*Mammals/ph [Physiology], Animals, Artiodactyla/ph [Physiology], Carnivora/ph [Physiology], Cercopithecus/ph [Physiology], Chiroptera/ph [Physiology], Ecology, Female, Galago/ph [Physiology], Liberia, Male, Mice/ph [Physiology], Pan troglodytes/ph [Physiology], Pregnancy, Rats/ph [Physiology], Rodentia/ph [Physiology], Sciuridae/ph [Physiology], Shrews/ph [Physiology]},
	pages = {523--88},
	file = {Coe - 1975 - Mammalian ecological studies on Mount Nimba, Liber.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\3GQ77QV2\\Coe - 1975 - Mammalian ecological studies on Mount Nimba, Liber.pdf:application/pdf}
}

@article{diarra_molecular_2020,
	title = {Molecular {Detection} of {Microorganisms} {Associated} with {Small} {Mammals} and {Their} {Ectoparasites} in {Mail}},
	volume = {103},
	issn = {0002-9637},
	url = {10.4269/ajtmh.19-0727},
	doi = {10.4269/ajtmh.19-0727},
	abstract = {Small mammals are the natural reservoirs for many zoonotic pathogens. Using molecular tools, we assessed the prevalence of bacteria and protozoans in small mammals and their ectoparasites in Faladje, Bougouni, and Bamako, Mali. A total of 130 small mammals belonging to 10 different species were captured, of which 74 (56.9\%) were infested by ectoparasites, including Laelaps echidnina, Xenopsylla cheopis, Amblyomma variegatum, Rhipicephalus sanguineus sensu lato, and Haemaphysalis spp. nymphs. DNA of Bartonella was found in 14/75 (18.7\%), 6/48 (12.5\%), and 3/7 (42.8\%) small mammals from Faladje, Bougouni, and Bamako, respectively. In Faladje, Bartonella DNA was detected in 31/68 (45.6\%) of L. echidnina and 14/22 (63.6\%) of X. cheopis. In Bougouni, it was found in 2/26 (7.7\%) of L. echidnina and 10/42 (23.8\%) of X. cheopis. The sequences of Bartonella obtained from small mammals were close to those of Bartonella mastomydis, Bartonella elizabethae, and uncultured Bartonella spp. In Faladje, Coxiella burnetii DNA was detected in 64.4\% (29/45) of Haemaphysalis spp. ticks, 4.5\% (2/44) of Mastomys erythroleucus, 12.5\% (1/8) of Praomys daltoni, and 1.5\% (1/68) of L. echidnina. We found DNA of Wolbachia in X. cheopis from Faladje and DNA of Rickettsia africae and Ehrlichia ruminantium in Am. variegatum from Bougouni. The results of our study show that several small mammal species harbor and may serve as potential reservoirs of Bartonella spp., likely to play a major role in the maintenance, circulation, and potential transmission of bacteria in Mali. The pathogenicity of these bacteria for humans or animals remains to be demonstrated.},
	number = {6},
	journal = {AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE},
	author = {Diarra, Adama and Kone, Abdoulaye and Niare, Safiatou and Laroche, Maureen and Diatta, Georges and Atteynine, Solimane and Coulibaly, Maimouna and Sangare, Abdoul and Kouriba, Bourema and Djimde, Abdoulaye and Dabo, Abdoulaye and Sagara, Issaka and Davoust, Bernard and Ranque, Stephane and Thera, Mahamadou and Raoult, Didier and Doumbo, Ogobara and Parola, Philippe},
	month = dec,
	year = {2020},
	pages = {2542--2551},
	file = {Diarra et al. - 2020 - Molecular Detection of Microorganisms Associated w.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\3CHAEH6V\\Diarra et al. - 2020 - Molecular Detection of Microorganisms Associated w.pdf:application/pdf}
}

@article{ofori_spatio-temporal_2016,
	title = {Spatio-temporal variation in small mammal species richness, relative abundance and body mass reveal changes in a coastal wetland ecosystem in {Ghana}},
	volume = {188},
	issn = {0167-6369},
	url = {10.1007/s10661-016-5320-5},
	doi = {10.1007/s10661-016-5320-5},
	abstract = {Coastal wetlands in Ghana are under severe threat of anthropogenic drivers of habitat degradation and climate change, thereby increasing the need for assessment and monitoring to inform targeted and effective conservation of these ecosystems. Here, we assess small mammal species richness, relative abundance and body mass in three habitats at the Muni-Pomadze Ramsar site of Ghana, and compare these to baseline data gathered in 1997 to evaluate changes in the wetland ecosystem. Small mammals were live-trapped using Sherman collapsible and pitfall traps. We recorded 84 individuals of 10 species in 1485 trap-nights, whereas the baseline study recorded 45 individuals of seven species in 986 trap-nights. The overall trap-success was therefore greater in the present study (5.66 \%) than the baseline study (4.56 \%). The species richness increased from one to four in the forest, and from zero to eight in the thicket, but decreased from six to four in the grassland. The total number of individuals increased in all habitats, with the dominant species in the grassland shifting from Lemniscomys striatus to Mastomys erythroleucus. Three species, Malacomys edwardsi, Grammomys poensis and Praomys tullbergi are the first records for the Muni-Pomadze Ramsar site. Generally, the average body mass of individual species in the grassland was lower in the present study. The considerable changes in small mammal community structure suggest changes in the wetland ecosystem. The conservation implications of our findings are discussed.},
	number = {6},
	journal = {ENVIRONMENTAL MONITORING AND ASSESSMENT},
	author = {Ofori, Benjamin Y. and Attuquayefio, Daniel K. and Owusu, Erasmus H. and Musah, Yahaya and Ntiamoa-Baidu, Yaa},
	month = jun,
	year = {2016}
}

@article{nicolas_terrestrial_2010,
	title = {Terrestrial small mammal diversity and abundance in central {Benin}: comparison between habitats, with conservation implications},
	volume = {48},
	issn = {0141-6707},
	url = {10.1111/j.1365-2028.2010.01221.x},
	doi = {10.1111/j.1365-2028.2010.01221.x},
	abstract = {We performed a terrestrial small mammal species inventory in the Agoua and Wari-Maro forest reserves (Benin). Four localities were sampled, and in each locality, three habitats were surveyed: dense forest, open forest or woodland savannah and shrub savannah. This is the first comprehensive inventory for small mammals in central Benin. We captured 794 small mammals representing twenty species (six shrew species, fourteen rodent species). Three new species that need to be described were recorded. We observed a mixture of both true forest species and of species adapted to a wider range of habitats ranging from savannah to forest clearings. Species with either Sudanian or Guinea-Congolian affinities were recorded, as well as a new species endemic to Togo and Benin. This rich biodiversity underlines the urgent need for an effective protection of these forests. The Sudanian species Crocidura cf. foxi was more abundant in Wari-Maro than in Agoua forest, while the Guineo-Congolian species Praomys misonnei and Hylomyscus sp were only captured in Agoua forest. These results are in agreement with the fact that these two forests belong to two distinct chorological zones.Resume},
	number = {4},
	journal = {AFRICAN JOURNAL OF ECOLOGY},
	author = {Nicolas, Violaine and Natta, Armand and Barriere, Patrick and Delapre, Arnaud and Colyn, Marc},
	month = dec,
	year = {2010},
	pages = {1092--1104},
	file = {Nicolas et al. - 2010 - Terrestrial small mammal diversity and abundance i.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\WZFYPVKD\\Nicolas et al. - 2010 - Terrestrial small mammal diversity and abundance i.pdf:application/pdf}
}

@article{granjon_population_2005,
	title = {Population dynamics of the multimammate rat {Mastomys} huberti in an annually flooded agricultural region of central {Mali}},
	volume = {86},
	issn = {0022-2372},
	url = {10.1644/1545-1542(2005)86[997:PDOTMR]2.0.CO;2},
	doi = {10.1644/1545-1542(2005)86[997:PDOTMR]2.0.CO;2},
	abstract = {A capture-mark-release program was run for 3 years in a rice-growing area of the inner delta of the Niger River in central Mali to monitor population dynamics of a major pest species, the multimammate rat Mastomys huberti. The abundance pattern showed a phase of low-to-medium abundances (June 2000-March 2002) leading to a peak (October 2002) followed by a dramatic crash ending in total Population disappearance induced by general flooding of the area in October 2003. Reproduction started well after the end of the rainy season, contrary to observations for this genus elsewhere. Survival was very low between the end of the rainy season and the middle of the dry season, then high during the rest of the dry season. The annual flood of the Niger River was found to have a major influence oil Population and spatial dynamics of M. huberti in this area by eliminating available ground surface in high-flood years, thus causing local extinction, and by delaying the onset of reproduction to the beginning of the dry season. Overall, the dynamics of multimammate rats in the inner delta of the Niger River appeared to be linked to rainfall and flooding patterns in a complex way. Maximum demographic growth appeared to be associated with intermediate levels of flood height, consistent with the intermediate disturbance hypothesis.},
	number = {5},
	journal = {JOURNAL OF MAMMALOGY},
	author = {Granjon, L and Cosson, JF and Quesseveur, E and Sicard, B},
	month = oct,
	year = {2005},
	pages = {997--1008},
	file = {Granjon et al. - 2005 - Population dynamics of the multimammate rat Mastom.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\C33YCE2K\\Granjon et al. - 2005 - Population dynamics of the multimammate rat Mastom.pdf:application/pdf}
}

@article{granjon_small_2002,
	title = {The small mammal community of a coastal site of south-west {Mauritania}},
	volume = {40},
	issn = {0141-6707},
	url = {10.1046/j.0141-6707.2001.00353.x},
	doi = {10.1046/j.0141-6707.2001.00353.x},
	abstract = {The small mammal community of a coastal site of southwestern Mauritania was monitored using live trapping, owl pellet analysis and nocturnal visual censuses. Ten species of rodents and two shrews were recorded. Gerbillid rodents (Gerbillus nanus, G. gerbillus, G. tarabidi, G. nigeriae and Taterillus arenarius) were the most prevalent in traps, whereas a relatively large proportion of owl pellets were made up of a murid rodent, Mastomys huberti. The presence of two species of murids (M. huberti and Arvicanthis niloticus) in this presaharian environment is made possible by the presence of small patches of green vegetation associated with localized fresh water inputs. The contradiction of results from the sampling methods indicate potential biases in the determination of community composition and relative species abundance. Results are also discussed in estimating the potential role of predation and competition in this small mammal community.},
	number = {1},
	journal = {AFRICAN JOURNAL OF ECOLOGY},
	author = {Granjon, L and Bruderer, C and Cosson, JF and Dia, AT and Colas, F},
	month = mar,
	year = {2002},
	pages = {10--17},
	file = {Granjon et al. - 2002 - The small mammal community of a coastal site of so.pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\JZLLAVR9\\Granjon et al. - 2002 - The small mammal community of a coastal site of so.pdf:application/pdf}
}

@article{diatta_comparative_1994,
	title = {A comparative study of three methods of detection of {Borrelia} crocidurae in wild rodents in {Senegal}},
	volume = {88},
	issn = {00359203},
	url = {10.1016/0035-9203(94)90412-X},
	doi = {10.1016/0035-9203(94)90412-X},
	abstract = {In a rural areain Senegalwith a high incidence of tick-borne relapsing fever in humans, Borrelia crocidurae was studied in the blood and brain of wild rodents (Mastomys etythroleucus, A{\textasciitilde}icanthis niloticus and Rattus rat\&s) using 3 methods: (i) direct examination of thick blood films; (ii) intraperitoneal inoculation of blood into white mice; (iii) in{\textasciitilde}a{\textasciitilde}ritoneal inoculation of homogen{\textasciitilde}ed cerebral tissue into white mice. Of the 82 rodents examined, the proportion of infected animals was respectively 2.4\%, 7.3\% and 146\% for each method, and 18.3\% for all 3 methods combined. Of the 12 animals with infected cerebral tissue, only 3 were found to have infected blood. These results suggestthat isolated infections of the brain occur frequently in Senegalesewild rodents. Measurement of the real prevalence of B. crocidurae should therefore take into account these infections in addition to blood infections.},
	language = {en},
	number = {4},
	urldate = {2021-03-29},
	journal = {Transactions of the Royal Society of Tropical Medicine and Hygiene},
	author = {Diatta, G. and Trape, J.F. and Legros, F. and Rogier, C. and Duplantier, J.M.},
	month = jul,
	year = {1994},
	pages = {423--424},
	file = {Diatta et al. - 1994 - A comparative study of three methods of detection .pdf:C\:\\Users\\ucbtds4\\Zotero\\storage\\43NTI6RN\\Diatta et al. - 1994 - A comparative study of three methods of detection .pdf:application/pdf}
}


text:
@InProceedings{lia16,
  title = {Multi-Bias Non-linear Activation in Deep Neural Networks},
  author = {Hongyang Li and Wanli Ouyang and Xiaogang Wang},
  pages = {221-229},
  abstract = {As a widely used non-linear activation, Rectified Linear Unit (ReLU) separates noise and signal in a feature map by learning a threshold or bias. However, we argue that the classification of noise and signal not only depends on the magnitude of responses, but also the context of how the feature responses would be used to detect more abstract patterns in higher layers. In order to output multiple response maps with magnitude in different ranges for a particular visual pattern, existing networks employing ReLU and its variants have to learn a large number of redundant filters. In this paper, we propose a multi-bias non-linear activation (MBA) layer to explore the information hidden in the magnitudes of responses. It is placed after the convolution layer to decouple the responses to a convolution kernel into multiple maps by multi-thresholding magnitudes, thus generating more patterns in the feature space at a low computational cost. It provides great flexibility of selecting responses to different visual patterns in different magnitude ranges to form rich representations in higher layers. Such a simple and yet effective scheme achieves the state-of-the-art performance on several benchmarks.},
}


text:
/**
 * File: style-desktop.css
 * Author: Ryan Prather
 * Purpose: Store all CSS
 * Created: ?
 *
 * Portions Copyright 2016: Cyber Perspective, All rights reserved
 * Released under the Apache v2.0 License
 *
 * Portions Copyright (c) 2012-2015, Salient Federal Solutions
 * Portions Copyright (c) 2008-2011, Science Applications International Corporation (SAIC)
 * Released under Modified BSD License
 *
 * See license.txt for details
 *
 * Change Log:
 *  - ? - File created
 *  - Sep 1, 2016 - Copyright updated, added file header and CSS for new top nav and fixed a couple bugs
 *  - Oct 5, 2016 - Added styling for hidden copyright-text element
 *  - Nov 7, 2016 - Fixed display
 *  - Feb 15, 2017 - Formatting and added border to bottom of targets
 *  - May 13, 2017 - Uncommented out background-color for thead
 *  - Jan 15, 2018 - Changed not reviewed background color to #a1a1a1
 */

/*
    Iridium: A responsive HTML5 website template by HTML5Templates.com
    Released for free under the Creative Commons Attribution 3.0 license (html5templates.com/license)
    Visit http://html5templates.com for more great templates or follow us on Twitter @HTML5T
*/

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  width: 80%;
  left: 10%;
  z-index: 1001;
  padding: 10px;
  display: none;
  background-color: #fff;
  overflow-y: scroll;
  overflow-x: hidden;
}
.backdrop {
  position: absolute;
  top: 0px;
  left: 0px;
  width: 100%;
  height: 100%;
  background: #000;
  opacity: 0.0;
  filter: alpha(opacity=0);
  z-index: 1000;
  display: none;
}
.header {
  font-weight: normal;
  width: 133px;
  vertical-align: middle;
  display: inline-block;
  text-align: center;
}
thead {
  background-color: #31363C;
  color: #fff;
}
.table-cat {
  text-align: center;
  font-size: 20px;
  background-color: #B4B2B2;
  width: 1200px;
}
.cat-cell {
  background-color: inherit;
  display: table-cell;
  width: 25px;
}
.cat_header {
  text-align: center;
  font-size: 20px;
  background-color: #B4B2B2;
  border: solid 1px #fff;
  width: 1200px;
}
.cat_header a {
  text-decoration: underline;
  color: #fff;
}
.odd_row {
  background-color: #80BFFF !important;
  color: #000;
  border-bottom: solid 1px #000;
}
.even_row {
  background-color: #E5F1FF !important;
  color: #000;
  border-bottom: solid 1px #000;
}

div.tableContainer {
  clear: both;
  height: 757px;
  margin: auto;
  overflow-y: auto;
}
div.tableContainer {
  width: 1200px;
}
div.tableContainer table {
  width: 1198px;
  border: solid 1px #fff;
}

/* Status colors */

.not_reviewed,.nr {
  color: #000;
  background-color: #a1a1a1;
  min-width: 25px;
}

.not_applicable,.na,.task-na {
  color: #000;
  background-color: #8db4e2;
  min-width: 25px;
}

.failure {
  background-color: #ff8c2c;
}

.not_planned,.no_data,.nd,.task-np {
  color: #fff;
  background-color: #000;
  min-width: 25px;
}

.complete,.compliant,.c,.not_a_finding,.nf,.false_positive,.fp,.task-nf,.task-comp {
  color: #000;
  background-color: #92d050;
  min-width: 25px;
}

.non_compliant,.nc,.open,.exception,.exp,.task-nr {
  background-color: #f00;
  color: #fff;
  min-width: 25px;
}

.in_progress,.task-ip {
  color: #000;
  background-color: #ffff66;
  min-width: 25px;
}

.cat_I {
  background-color: #f00;
  color: #fff;
}

.cat_II {
  color: #000;
  background-color: #ff0;
}

.cat_III {
  color: #000;
  background-color: #ffc000;
}

repository: dennythecoder/sagacity

repo_name: dennythecoder/sagacity


text:
@article{alford2015formation,
  title={The formation and fate of internal waves in the South China Sea},
  author={Alford, Matthew H and Peacock, Thomas and MacKinnon, Jennifer A and Nash, Jonathan D and Buijsman, Maarten C and Centuroni, Luca R and Chao, Shenn-Yu and Chang, Ming-Huei and Farmer, David M and Fringer, Oliver B and others},
  journal={Nature},
  volume={521},
  number={7550},
  pages={65--69},
  year={2015},
  publisher={Nature Publishing Group}
}

@article{wang2007physical,
  title={Physical and ecological processes of internal waves on an isolated reef ecosystem in the South China Sea},
  author={Wang, Yu-Huai and Dai, Chang-Feng and Chen, Yang-Yih},
  journal={Geophysical Research Letters},
  volume={34},
  number={18},
  year={2007},
  publisher={Wiley Online Library}
}


text:
%%% -*-BibTeX-*-
@inproceedings{Zhuang2018CVPR_b,
    title      = {Towards Effective Low-bitwidth Convolutional Neural Networks},
    author       = {Bohan Zhuang and  Chunhua Shen  and Mingkui Tan and Lingqiao Liu and  Ian Reid},
    year        = {2018},
    month       = {},
    booktitle   = {IEEE Conference on Computer Vision and Pattern Recognition (CVPR'18)},
    address     = {},
    venue       = {CVPR},
    pages       = {},
    volume      = {},
    publisher   = {},
    eprint      = {1711.00205},
    url         = {},
    project     = {},
}


text:
require chromium-upstream-tarball.inc
require chromium-gn.inc

SRC_URI += " \
        file://0001-Reland-minigbm-define-GBM_BO_IMPORT_FD_MODIFIER.patch \
        file://0001-ozone-wayland-Fix-kiosk-mode.patch \
        file://0002-ozone-common-Make-planar-import-work-with-0.patch \
        file://0003-ozone-common-Fix-IsValidBufferFormat.patch \
        file://0004-Removed-dependencies-on-third_party-libdrm.patch \
        file://0005-ozone-wayland-Clean-up-duplicated-header.patch \
        file://0006-ozone-wayland-Start-using-announced-formats.patch \
        file://0007-Ozone-Implement-starting-dragging-with-ozon.patch \
        file://0008-ozone-wayland-Enable-native-gpu-memory-buff.patch \
        file://0009-Ozone-Add-OzonePlatform-IsNativePixmapConfi.patch \
        file://0010-ozone-move-gbm-wrapper-into-a-separate-sour.patch \
        file://0011-fixup-ozone-move-gbm-wrapper-into-a-separat.patch \
        file://0012-ozone-Rename-ClipboardDelegate-to-PlatformC.patch \
        file://0013-Wayland-wayland-for-tracing.patch \
        file://0014-Whitelist-dmabuf-sync-ioctl-on-all-linux-pl.patch \
        file://0015-Reland-ozone-common-Make-gbm_wrapper-to-be-compiled-.patch \
        file://0016-Add-support-for-V4L2VDA-on-Linux.patch \
        file://0017-Add-mmap-via-libv4l-to-generic_v4l2.patch \
"

REQUIRED_DISTRO_FEATURES = "wayland"

DEPENDS += "\
        libxkbcommon \
        virtual/egl \
        wayland \
"

# Chromium can use v4l2 device for hardware accelerated video decoding. Make sure that
# /dev/video-dec exists.
PACKAGECONFIG[use-linux-v4l2] = "use_v4l2_codec=true use_v4lplugin=true use_linux_v4l2_only=true"

GN_ARGS += "\
        ${PACKAGECONFIG_CONFARGS} \
        use_ozone=true \
        ozone_auto_platforms=false \
        ozone_platform_headless=true \
        ozone_platform_wayland=true \
        ozone_platform_x11=false \
        use_xkbcommon=true \
        use_system_libwayland=true \
        use_system_minigbm=true \
        use_system_libdrm=true \
"

# The chromium binary must always be started with those arguments.
CHROMIUM_EXTRA_ARGS_append = " --ozone-platform=wayland"

# http://errors.yoctoproject.org/Errors/Details/186958/
EXCLUDE_FROM_WORLD_libc-musl = "1"

repository: ac-frg/meta-browser

repo_name: ac-frg/meta-browser


text:
*{
   margin: 0;
   padding: 0;
   box-sizing: border-box;
}

.app{
    min-height: calc(100vh - 104px);
    /* width:100% */
}

.navbar{
    height:3.25rem;
}

.b-line{
    border-bottom:1px solid #333;
}

.default_dp{
    width:32px;
    height:32px;
    border-radius:50%;
    display:inline-block;
}

@keyframes spin{
    from{transform:rotatez(0deg)}
    to{transform:rotatez(360deg)}
}
.active .refresh{
    animation:spin 1s ease-out infinite;
}

.Blog-list ul{
    list-style:none;
}

/* ticle details */
.by .image{
    display:inline-block;
}

.ticle-body::first-letter{
    padding-left:20px;
    font-size: 150%;
    font-weight:500;
}

.write-ticle .title, .write-ticle .body {
    width:100%;
}

.write-ticle .title {
    background-color: rgba(0,0,0,0);
    border:none;
}
.write-ticle .title:focus {
    outline:none;
}
.write-ticle .body{
    background-color: rgba(255,255,255,0.5);
}

.user-profile-post .user-ticles{
    max-height:100vh;
    overflow-y:scroll;
    overflow-x:hidden;
}

/* .user-profile{

} */

.options_btn{
    padding:5px 10px;
    margin-bottom: 15px;
    height:auto;
    background-color: rgba(255, 255, 255, 0.4);
    border-radius: 50%;
    cursor: pointer;
}

.options{
    position: absolute;
    padding:5px;
    margin-right: 15px;
    top:0;
    right:0;
}

.options_modal{
    padding: 15px;
    background-color: #fff;
    z-index: 11;
}

.options_bg{
    position: absolute;
    width: 100%;
    height: 100%;
    top:0;
    left:0;
}

footer{
    min-height: 52px;
}
footer > div{
    width: 100%;
    position: fixed;
    bottom: 0;
    left: 0;
    height: fit-content;
    font-size: 1.2em;
}

footer .columns:last-child {
    margin-bottom: 0;
}

repository: emmyoks/ticle

repo_name: emmyoks/ticle