text:
8},
volume = {107},
year = {2005}
}
@article{Howie2012,
abstract = {The 1000 Genomes Project and disease-specific sequencing efforts are producing large collections of haplotypes that can be used as reference panels for genotype imputation in genome-wide association studies (GWAS). However, imputing from large reference panels with existing methods imposes a high computational burden. We introduce a strategy called 'pre-phasing' that maintains the accuracy of leading methods while reducing computational costs. We first statistically estimate the haplotypes for each individual within the GWAS sample (pre-phasing) and then impute missing genotypes into these estimated haplotypes. This reduces the computational cost because (i) the GWAS samples must be phased only once, whereas standard methods would implicitly repeat phasing with each reference panel update, and (ii) it is much faster to match a phased GWAS haplotype to one reference haplotype than to match two unphased GWAS genotypes to a pair of reference haplotypes. We implemented our approach in the MaCH and IMPUTE2 frameworks, and we tested it on data sets from the Wellcome Trust Case Control Consortium 2 (WTCCC2), the Genetic Association Information Network (GAIN), the Women's Health Initiative (WHI) and the 1000 Genomes Project. This strategy will be particularly valuable for repeated imputation as reference panels evolve.},
archivePrefix = {arXiv},
arxivId = {NIHMS150003},
author = {Howie, Bryan and Fuchsberger, Christian and Stephens, Matthew and Marchini, Jonathan and Abecasis, Gon{\c{c}}alo R.},
doi = {10.1038/ng.2354},
eprint = {NIHMS150003},
isbn = {1546-1718 (Electronic)$\backslash$r1061-4036 (Linking)},
issn = {1061-4036},
journal = {Nature Genetics},
number = {8},
pages = {955--959},
pmid = {22820512},
title = {{Fast and accurate genotype imputation in genome-wide association studies through pre-phasing}},
url = {http://www.nature.com/ng/journal/v44/n8/full/ng.2354.html$\backslash$nhttp://www.nature.com/ng/journal/v44/n8/pdf/ng.2354.pdf},
volume = {44},
year = {2012}
}
@article{Delaneau2012,
abstract = {Human-disease etiology can be better understood with phase information about diploid sequences. We present a method for estimating haplotypes, using genotype data from unrelated samples or small nuclear families, that leads to improved accuracy and speed compared to several widely used methods. The method, segmented haplotype estimation and imputation tool (SHAPEIT), scales linearly with the number of haplotypes used in each iteration and can be run efficiently on whole chromosomes.},
author = {Delaneau, Olivier and Marchini, Jonathan and Zagury, Jean-Fran{\c{c}}ois},
doi = {10.1038/nmeth.1785},
isbn = {15487091},
issn = {1548-7105},
journal = {Nature methods},
keywords = {Genome,Haplotypes},
number = {2},
pages = {179--81},
pmid = {22138821},
title = {{A linear complexity phasing method for thousands of genomes.}},
url = {http://dx.doi.org/10.1038/nmeth.1785},
volume = {9},
year = {2012}
}
@article{Billings2010a,
abstract = {Type 2 diabetes mellitus has been at the forefront of human diseases and phenotypes studied by new genetic analyses. Thanks to genome-wide association studies, we have made substantial progress in elucidating the genetic basis of type 2 diabetes. This review summarizes the concept, history, and recent discoveries produced by genome-wide association studies for type 2 diabetes and glycemic traits, with a focus on the key notions we have gleaned from these efforts. Genome-wide association findings have illustrated novel pathways, pointed toward fundamental biology, confirmed prior epidemiological observations, drawn attention to the role of $\beta$-cell dysfunction in type 2 diabetes, explained {\~{}}10{\%} of disease heritability, tempered our expectations with regard to their use in clinical prediction, and provided possible targets for pharmacotherapy and pharmacogenetic clinical trials. We can apply these lessons to future investigation so as to improve our understanding of the genetic basis of type 2 diabetes.},
author = {Billings, Liana K and Florez, Jose C},
doi = {10.1111/j.1749-6632.2010.05838.x},
file = {:Users/jtorres/Library/Application Support/Mendeley Desktop/Downloaded/Billings, Florez - 2010 - The genetics of type 2 diabetes what have we learned from GWAS.pdf:pdf},
isbn = {00778923},
issn = {1749-6632},
journal = {Annals of the New York Academy of Sciences},
pages = {59--77},
pmid = {21091714},
title = {{The genetics of type 2 diabetes: what have we learned from GWAS?}},
volume = {1212},
year = {2010}
}
@article{Hoffmann2011a,
abstract = {Four custom Axiom genotyping arrays were designed for a genome-wide association (GWA) study of 100,000 participants from the Kaiser Permanente Research Program on Genes, Environment and Health. The array optimized for individuals of European race/ethnicity was previously described. Here we detail the development of three additional microarrays optimized for individuals of East Asian, African American, and Latino race/ethnicity. For these arrays, we decreased redundancy of high-performing SNPs to increase SNP capacity. The East Asian array was designed using greedy pairwise SNP selection. However, removing SNPs from the target set based on imputation coverage is more efficient than pairwise tagging. Therefore, we developed a novel hybrid SNP selection method for the African American and Latino arrays utilizing rounds of greedy pairwise SNP selection, followed by removal from the target set of SNPs covered by imputation. The arrays provide excellent genome-wide coverage and are valuable additions for large-scale GWA studies. },
author = {Hoffmann, Thomas J and Zhan, Yiping and Kvale, Mark N and Hesselson, Stephanie E and Gollub, Jeremy and Iribarren, Carlos and Lu, Yontao and Mei, Gangwu and Purdy, Matthew M and Quesenberry, Charles and Rowell, Sarah and Shapero, Michael H and Smethurst, David and Somkin, Carol P and {Van den Eeden}, Stephen K and Walter, Larry and Webster, Teresa and Whitmer, Rachel A and Finn, Andrea and Schaefer, Catherine and Kwok, Pui-Yan and Risch, Neil},
doi = {10.1016/j.ygeno.2011.08.007},
issn = {0888-7543},
journal = {Genomics},
month = {dec},
number = {6},
pages = {422--430},
title = {{Design and coverage of high throughput genotyping arrays optimized for individuals of East Asian, African American, and Latino race/ethnicity using imputation and a novel hybrid SNP selection algorithm}},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3502750/},
volume = {98},
year = {2011}
}
@article{Depner2014,
abstract = {Sleep and circadian rhythms modulate or control daily physiological patterns with importance for normal metabolic health. Sleep deficiencies associated with insufficient sleep schedules, insomnia with short-sleep duration, sleep apnea, narcolepsy, circadian misalignment, shift work, night eating syndrome, and sleep-related eating disorder may all contribute to metabolic dysregulation. Sleep deficiencies and circadian disruption associated with metabolic dysregulation may contribute to weight gain, obesity, and type 2 diabetes potentially by altering timing and amount of food intake, disrupting energy balance, inflammation, impairing glucose tolerance, and insulin sensitivity. Given the rapidly increasing prevalence of metabolic diseases, it is important to recognize the role of sleep and circadian disruption in the development, progression, and morbidity of metabolic disease. Some findings indicate sleep treatments and countermeasures improve metabolic health, but future clinical research investigating prevention and treatment of chronic metabolic disorders through treatment of sleep and circadian disruption is needed.},
author = {Depner, Christopher M. and Stothard, Ellen R. and Wright, Kenneth P.},
doi = {10.1007/s11892-014-0507-z},
file = {:Users/jtorres/Google Drive/Articles/Manuscript{\_}2016/Depner{\_}sleep{\_}2014.pdf:pdf},
isbn = {1534-4827},
issn = {15390829},
journal = {Current Diabetes Reports},
keywords = {Circadian disorders,Circadian disruption,Circadian misalignment,Energy balance,Glucose tolerance,Insufficient sleep,Insulin sensitivity,Metabolic consequences,Metabolic syndrome,Obesity,Shift work,Sleep,Sleep apnea,Sleep deficiency,Type 2 diabetes},
number = {7},
pmid = {24816752},
title = {{Metabolic consequences of sleep and circadian disorders}},
volume = {14},
year = {2014}
}
@article{Replication2014,
abstract = {To further understanding of the genetic basis of type 2 diabetes (T2D) susceptibility, we aggregated published meta-analyses of genome-wide association studies (GWAS), including 26,488 cases and 83,964 controls of European, east Asian, south Asian and Mexican and Mexican American ancestry. We observed a significant excess in the directional consistency of T2D risk alleles across ancestry groups, even at SNPs demonstrating only weak evidence of association. By following up the strongest signals of association from the trans-ethnic meta-analysis in an additional 21,491 cases and 55,647 controls of European ancestry, we identified seven new T2D susceptibility loci. Furthermore, we observed considerable improvements in the fine-mapping resolution of common variant association signals at several T2D susceptibility loci. These observations highlight the benefits of trans-ethnic GWAS for the discovery and characterization of complex trait loci and emphasize an exciting opportunity to extend insight into the genetic architecture and pathogenesis of human diseases across populations of diverse ancestry.},
archivePrefix = {arXiv},
arxivId = {15334406},
author = {Replication, Diabetes Genetics and Consortium, Meta-analysis Diagram and Epidemiology, Asian Genetic},
doi = {10.1038/ng.2897},
eprint = {15334406},
file = {:Users/jtorres/Google Drive/Articles/Manuscript{\_}2016/diagram{\_}transmeta{\_}2014.pdf:pdf},
isbn = {1546-1718 (Electronic)$\backslash$r1061-4036 (Linking)},
issn = {1546-1718},
journal = {Nature genetics},
keywords = {2,Alleles,Asian Continental Ancestry Group,Asian Continental Ancestry Group: genetics,Case-Control Studies,Diabetes Mellitus,European Continental Ancestry Group,European Continental Ancestry Group: genetics,Genetic Predisposition to Disease,Genome-Wide Association Study,Hispanic Americans,Hispanic Americans: genetics,Humans,Polymorphism,Risk Factors,Single Nucleotide,Type 2,Type 2: genetics,asian genetic epidemiology,consortium 1,diabetes genetics replication and,diagram,genome-wide trans-ancestry meta-analysis provides,icles,insight,into the genetic architecture,meta-analysis,of type 2 diabetes,susceptibility},
number = {3},
pages = {234--44},
pmid = {24509480},
title = {{Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/24509480},
volume = {46},
year = {2014}
}
@article{Love2014,
abstract = {In comparative high-throughput sequencing assays, a fundamental task is the analysis of count data, such as read counts per gene in RNA-seq, for evidence of systematic changes across experimental conditions. Small replicate numbers, discreteness, large dynamic range and the presence of outliers require a suitable statistical approach. We present DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The DESeq2 package is available at                   http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html                                  .},
author = {Love, Michael I and Huber, Wolfgang and Anders, Simon},
doi = {10.1186/s13059-014-0550-8},
issn = {1465-6906},
journal = {Genome Biology},
number = {12},
pages = {1--21},
title = {{Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2}},
url = {http://dx.doi.org/10.1186/s13059-014-0550-8},
volume = {15},
year = {2014}
}

license: MIT

license_type: permissive

branch_name: refs/heads/master

extension: bib


text:
@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2019},
  url = {https://www.R-project.org/},
}
@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2019},
  note = {R package version 0.14},
  url = {https://CRAN.R-project.org/package=bookdown},
}
@Manual{R-car,
  title = {car: Companion to Applied Regression},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2019},
  note = {R package version 3.0-3},
  url = {https://CRAN.R-project.org/package=car},
}
@Manual{R-carData,
  title = {carData: Companion to Applied Regression Data Sets},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2018},
  note = {R package version 3.0-2},
  url = {https://CRAN.R-project.org/package=carData},
}
@Manual{R-DHARMa,
  title = {DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models},
  author = {Florian Hartig},
  year = {2019},
  note = {R package version 0.2.4},
  url = {https://CRAN.R-project.org/package=DHARMa},
}
@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2019},
  note = {R package version 0.8.3},
  url = {https://CRAN.R-project.org/package=dplyr},
}
@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 0.4.0},
  url = {https://CRAN.R-project.org/package=forcats},
}
@Manual{R-gamlss.dist,
  title = {gamlss.dist: Distributions for Generalized Additive Models for Location Scale
and Shape},
  author = {Mikis Stasinopoulos and Robert Rigby},
  year = {2019},
  note = {R package version 5.1-5},
  url = {https://CRAN.R-project.org/package=gamlss.dist},
}
@Manual{R-geepack,
  title = {geepack: Generalized Estimating Equation Package},
  author = {Søren Højsgaard and Ulrich Halekoh and Jun Yan,},
  year = {2016},
  note = {R package version 1.2-1},
  url = {https://CRAN.R-project.org/package=geepack},
}
@Manual{R-GGally,
  title = {GGally: Extension to 'ggplot2'},
  author = {Barret Schloerke and Jason Crowley and Di Cook and Francois Briatte and Moritz Marbach and Edwin Thoen and Amos Elberg and Joseph Larmarange},
  year = {2018},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=GGally},
}
@Manual{R-ggformula,
  title = {ggformula: Formula Interface to the Grammar of Graphics},
  author = {Daniel Kaplan and Randall Pruim},
  year = {2019},
  note = {R package version 0.9.2},
  url = {https://CRAN.R-project.org/package=ggformula},
}
@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  note = {R package version 3.2.1},
  url = {https://CRAN.R-project.org/package=ggplot2},
}
@Manual{R-ggstance,
  title = {ggstance: Horizontal 'ggplot2' Components},
  author = {Lionel Henry and Hadley Wickham and Winston Chang},
  year = {2019},
  note = {R package version 0.3.3},
  url = {https://CRAN.R-project.org/package=ggstance},
}
@Manual{R-glmmTMB,
  title = {glmmTMB: Generalized Linear Mixed Models using Template Model Builder},
  author = {Arni Magnusson and Hans Skaug and Anders Nielsen and Casper Berg and Kasper Kristensen and Martin Maechler and Koen {van Bentham} and Ben Bolker and Mollie Brooks},
  year = {2019},
  note = {R package version 0.2.3},
  url = {https://CRAN.R-project.org/package=glmmTMB},
}
@Manual{R-haven,
  title = {haven: Import and Export 'SPSS', 'Stata' and 'SAS' Files},
  author = {Hadley Wickham and Evan Miller},
  year = {2019},
  note = {R package version 2.1.1},
  url = {https://CRAN.R-project.org/package=haven},
}
@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2019},
  note = {R package version 1.25},
  url = {https://CRAN.R-project.org/package=knitr},
}
@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2018},
  note = {R package version 0.20-38},
  url = {https://CRAN.R-project.org/package=lattice},
}
@Manual{R-lme4,
  title = {lme4: Linear Mixed-Effects Models using 'Eigen' and S4},
  author = {Douglas Bates and Martin Maechler and Ben Bolker and Steven Walker},
  year = {2019},
  note = {R package version 1.1-21},
  url = {https://CRAN.R-project.org/package=lme4},
}
@Manual{R-MASS,
  title = {MASS: Support Functions and Datasets for Venables and Ripley's MASS},
  author = {Brian Ripley},
  year = {2019},
  note = {R package version 7.3-51.4},
  url = {https://CRAN.R-project.org/package=MASS},
}
@Manual{R-Matrix,
  title = {Matrix: Sparse and Dense Matrix Classes and Methods},
  author = {Douglas Bates and Martin Maechler},
  year = {2019},
  note = {R package version 1.2-17},
  url = {https://CRAN.R-project.org/package=Matrix},
}
@Manual{R-mgcv,
  title = {mgcv: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation},
  author = {Simon Wood},
  year = {2019},
  note = {R package version 1.8-28},
  url = {https://CRAN.R-project.org/package=mgcv},
}
@Manual{R-mosaic,
  title = {mosaic: Project MOSAIC Statistics and Mathematics Teaching Utilities},
  author = {Randall Pruim and Daniel T. Kaplan and Nicholas J. Horton},
  year = {2019},
  note = {R package version 1.5.0},
  url = {https://CRAN.R-project.org/package=mosaic},
}
@Manual{R-mosaicData,
  title = {mosaicData: Project MOSAIC Data Sets},
  author = {Randall Pruim and Daniel Kaplan and Nicholas Horton},
  year = {2018},
  note = {R package version 0.17.0},
  url = {https://CRAN.R-project.org/package=mosaicData},
}
@Manual{R-MuMIn,
  title = {MuMIn: Multi-Model Inference},
  author = {Kamil Barton},
  year = {2019},
  note = {R package version 1.43.6},
  url = {https://CRAN.R-project.org/package=MuMIn},
}
@Manual{R-nlme,
  title = {nlme: Linear and Nonlinear Mixed Effects Models},
  author = {José Pinheiro and Douglas Bates and {R-core}},
  year = {2019},
  note = {R package version 3.1-140},
  url = {https://CRAN.R-project.org/package=nlme},
}
@Manual{R-pscl,
  title = {pscl: Political Science Computational Laboratory},
  author = {Simon Jackman and with contributions from Alex Tahk and Achim Zeileis and Christina Maimone and Jim Fearon and Zoe Meers},
  year = {2017},
  note = {R package version 1.5.2},
  url = {https://CRAN.R-project.org/package=pscl},
}
@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2019},
  note = {R package version 0.3.2},
  url = {https://CRAN.R-project.org/package=purrr},
}
@Manual{R-RColorBrewer,
  title = {RColorBrewer: ColorBrewer Palettes},
  author = {Erich Neuwirth},
  year = {2014},
  note = {R package version 1.1-2},
  url = {https://CRAN.R-project.org/package=RColorBrewer},
}
@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2018},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=readr},
}
@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2019},
  note = {R package version 1.16},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}
@Manual{R-s245,
  title = {s245: Tools for Calvin College STAT 245},
  author = {S DeRuiter and STAT 245 students},
  year = {2019},
  note = {R package version 0.1.0},
}
@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}
@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2019},
  note = {R package version 2.1.3},
  url = {https://CRAN.R-project.org/package=tibble},
}
@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Lionel Henry},
  year = {2019},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=tidyr},
}
@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the 'Tidyverse'},
  author = {Hadley Wickham},
  year = {2017},
  note = {R package version 1.2.1},
  url = {https://CRAN.R-project.org/package=tidyverse},
}
@Manual{R-tweedie,
  title = {tweedie: Evaluation of Tweedie Exponential Family Models},
  author = {Peter K. Dunn},
  year = {2017},
  note = {R package version 2.3.2},
  url = {https://CRAN.R-project.org/package=tweedie},
}


text:
require recipes-core/images/core-image-base.bb

IMAGE_INSTALL_append = " \
    i2c-tools \
    libgpiod-tools \
    spitools \
    temperature \
"

IMAGE_FEATURES_append = " ssh-server-dropbear "

repository: csarraud/meta-ynov-project

repo_name: csarraud/meta-ynov-project

extension: bb


text:
@article{Chu-2018-Temporal,
    title = "Temporal Dynamics of Aerodynamic Canopy Height Derived From Eddy Covariance Momentum Flux Data Across North American Flux Networks",
    author = "Chu, Housen  and
      Baldocchi, Dennis D.  and
      Poindexter, Cristina  and
      Abraha, Michael  and
      Desai, Ankur R.  and
      Bohrer, Gil  and
      Arain, M. Altaf  and
      Griffis, Timothy  and
      Blanken, Peter D.  and
      O'Halloran, Thomas L.  and
      Thomas, R. Quinn  and
      Zhang, Quan  and
      Burns, Sean P.  and
      Frank, John M.  and
      Christian, Dold  and
      Brown, Shannon  and
      Black, T. Andrew  and
      Gough, Christopher M.  and
      Law, Beverly E.  and
      Lee, Xuhui  and
      Chen, Jiquan  and
      Reed, David E.  and
      Massman, William J.  and
      Clark, Kenneth  and
      Hatfield, Jerry  and
      Prueger, John  and
      Bracho, Rosvel  and
      Baker, John M.  and
      Martin, Timothy A.",
    journal = "Geophysical Research Letters, Volume 45, Issue 17",
    volume = "45",
    number = "17",
    year = "2018",
    publisher = "American Geophysical Union (AGU)",
    url = "https://aclanthology.org/G18-30001",
    doi = "10.1029/2018gl079306",
    pages = "9275--9287",
    abstract = "Author(s): Chu, H; Baldocchi, DD; Poindexter, C; Abraha, M; Desai, AR; Bohrer, G; Arain, MA; Griffis, T; Blanken, PD; O'Halloran, TL; Thomas, RQ; Zhang, Q; Burns, SP; Frank, JM; Christian, D; Brown, S; Black, TA; Gough, CM; Law, BE; Lee, X; Chen, J; Reed, DE; Massman, WJ; Clark, K; Hatfield, J; Prueger, J; Bracho, R; Baker, JM; Martin, TA | Abstract: Aerodynamic canopy height (ha) is the effective height of vegetation canopy for its influence on atmospheric fluxes and is a key parameter of surface-atmosphere coupling. However, methods to estimate ha from data are limited. This synthesis evaluates the applicability and robustness of the calculation of ha from eddy covariance momentum-flux data. At 69 forest sites, annual ha robustly predicted site-to-site and year-to-year differences in canopy heights (R2n=n0.88, 111nsite-years). At 23 cropland/grassland sites, weekly ha successfully captured the dynamics of vegetation canopies over growing seasons (R2ngn0.70 in 74nsite-years). Our results demonstrate the potential of flux-derived ha determination for tracking the seasonal, interannual, and/or decadal dynamics of vegetation canopies including growth, harvest, land use change, and disturbance. The large-scale and time-varying ha derived from flux networks worldwide provides a new benchmark for regional and global Earth system models and satellite remote sensing of canopy structure.",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

branch_name: refs/heads/main

gha_language: Python


text:
DESCRIPTION = "Tornado is an open source version of the scalable, non-blocking web server and tools that power FriendFeed."
LICENSE = "Apache-2.0"
LIC_FILES_CHKSUM = "file://LICENSE;md5=3b83ef96387f14655fc854ddc3c6bd57"

PV = "4.0.2"

SRCREV = "b18b12b532790f40edf431625d184bf8e479956b"
SRC_URI = "git://github.com/tornadoweb/tornado.git;branch=branch4.0"

S = "${WORKDIR}/git"

inherit setuptools

DEPENDS = "python-certifi"

RDEPENDS_${PN} = "python-certifi"
RCONFLICTS_${PN} = "python-tornado"
RCONFLICTS_${PN} = "python-tornado45"
RCONFLICTS_${PN} = "python-tornado50"

repository: koenkooi/meta-maker

repo_name: koenkooi/meta-maker

gha_license_id: MIT

gha_language: BitBake


text:
DESCRIPTION = "Jpeg 2000 implementation"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://LICENSE;md5=baa697d7510288a9cdcce9bd7edaf9bc"

PR = "r1"

SRC_URI = "http://www.ece.uvic.ca/~mdadams/jasper/software/jasper-${PV}.zip"

inherit autotools lib_package

PACKAGECONFIG ??= ""
PACKAGECONFIG[jpeg] = "--enable-libjpeg,--disable-libjpeg,jpeg"

EXTRA_OECONF = "--enable-shared"

SRC_URI[md5sum] = "a342b2b4495b3e1394e161eb5d85d754"
SRC_URI[sha256sum] = "6b905a9c2aca2e275544212666eefc4eb44d95d0a57e4305457b407fe63f9494"

repository: ExorEmbedded/exor-workspace

repo_name: ExorEmbedded/exor-workspace


text:
@article{example2,
  title = {Breaking down gesture and action in mental rotation: Understanding the components of movement that promote learning},
  author={Wakefield, Elizabeth M.; Dulaney, Alana E.; Ping, Raedy; Villarreal, Julia N.; Goldin-Meadow, S.; Levine, Susan C.},
  journal = {Developmental Psychology},
  year    = 2019,
  volume  = 55,
  number  = 5,
  pages = 981-993,
  doi = 10.1037/dev0000697
}


text:
SUMMARY = "Device::Modem - Prel extension to talk to modem devices connected via serial port"
AUTHOR = "Cosimo Streppone <cosimo@cpan.org>"
HOMEPAGE = "https://metacpan.org/release/Device-Modem"
SECTION = "libs"
LICENSE = "Artistic-1.0 | GPL-1.0+"
LIC_FILES_CHKSUM = "file://META.yml;md5=b67c3a9c3a685020be4ae38a2ae1723c"

SRC_URI = "http://cpan.metacpan.org/authors/id/C/CO/COSIMO/Device-Modem-1.56.tar.gz"
SRC_URI[md5sum] = "a0ec45c3e313bea27ccb476d3b725955"
SRC_URI[sha256sum] = "907fc083b5dc11e0782a3a9482b0810108fd3b0f2bf09efdbdcced2a6cce6071"

S = "${WORKDIR}/Device-Modem-${PV}"

inherit cpan

RDEPENDS_${PN} += "libdevice-serialport-perl"

RPROVIDES_${PN} += "libdevice-modem-log-file-perl \
                    libdevice-modem-log-syslog-perl \
                    libdevice-modem-usrobotics-perl \
                    libdevice-xmodem-constants-perl \
                    libdevice-xmodem-block-perl \
                    libdevice-xmodem-buffer-perl \
                    libdevice-xmodem-receiver-perl \
                    "

BBCLASSEXTEND = "native"


text:
inherit esw_examples features_check

REQUIRED_DISTRO_FEATURES = "xadcps"

ESW_COMPONENT_SRC = "/XilinxProcessorIPLib/drivers/xadcps/examples/"

repository: fullstackfpga/meta-xilinx

repo_name: fullstackfpga/meta-xilinx


text:
@article{gracia_dealing_2011,
	title = {Dealing with {Semantic} {Heterogeneity} {Issues} on the {Web}},
	issn = {1089-7801},
	url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=6025341},
	doi = {10.1109/MIC.2011.129},
	urldate = {2016-03-26},
	journal = {IEEE Internet Computing},
	author = {Gracia, Jorge and Mena, Eduardo},
	year = {2011}
}

@misc{_sioc_????,
	title = {{SIOC} {Core} {Ontology} {Specification}},
	url = {https://www.w3.org/Submission/sioc-spec/},
	urldate = {2016-03-26},
	file = {SIOC Core Ontology Specification:files/13/sioc-spec.html:text/html}
}

@misc{center_for_history_and_new_media_zotero_????,
	title = {Zotero {Quick} {Start} {Guide}},
	url = {http://zotero.org/support/quick_start_guide},
	author = {{Center for History and New Media}},
	annote = {Welcome to Zotero!View the Quick Start Guide to learn how to begin collecting, managing, citing, and sharing your research sources.Thanks for installing Zotero.}
}

@misc{_foaf_????,
	title = {{FOAF} {Vocabulary} {Specification}},
	url = {http://xmlns.com/foaf/spec/20140114.html},
	urldate = {2016-03-26},
	file = {FOAF Vocabulary Specification:files/9/20140114.html:text/html}
}

@misc{_dcmi_????,
	title = {{DCMI} {Home}: {Dublin} {Core}� {Metadata} {Initiative} ({DCMI})},
	url = {http://dublincore.org/},
	urldate = {2016-03-26},
	file = {DCMI Home\: Dublin Core� Metadata Initiative (DCMI):files/11/dublincore.org.html:text/html}
}

@book{_social_2007,
	address = {Boston, MA},
	series = {Semantic {Web} and {Beyond}},
	title = {Social {Networks} and the {Semantic} {Web}},
	volume = {5},
	isbn = {978-0-387-71000-6},
	url = {http://link.springer.com/10.1007/978-0-387-71001-3},
	language = {en},
	urldate = {2016-03-26},
	publisher = {Springer US},
	year = {2007}
}

@misc{_skos_????,
	title = {{SKOS} {Simple} {Knowledge} {Organization} {System} {Reference}},
	url = {https://www.w3.org/TR/2009/REC-skos-reference-20090818/},
	urldate = {2016-03-26},
	file = {SKOS Simple Knowledge Organization System Reference:files/7/REC-skos-reference-20090818.html:text/html}
}


text:
include(${CMAKE_TOOLCHAIN_FILE})
include(cpp_unit_test_helpers)
include(cache/cache_paths)
_cpp_setup_test_env("cache_add_find_module")

set(input_module ${test_prefix}/input.cmake)
file(WRITE ${input_module} "Hi")

set(src_path ${test_prefix}/${test_number})
_cpp_cache_find_module_path(path ${src_path} dummy)
_cpp_add_test(
TITLE "Basic Usage"
CONTENTS
    "include(cache/cache_find_module)"
    "_cpp_cache_add_find_module(${src_path} dummy ${input_module})"
    "_cpp_assert_exists(${path})"
    "_cpp_assert_file_contains(\"Hi\" ${path})"
)

_cpp_add_test(
TITLE "Okay to call twice with same content"
CONTENTS
    "include(cache/cache_find_module)"
    "_cpp_assert_exists(${path})"
    "_cpp_cache_add_find_module(${src_path} dummy ${input_module})"
    "_cpp_assert_exists(${path})"
    "_cpp_assert_file_contains(\"Hi\" ${path})"
)

file(WRITE ${input_module} "Bye")
_cpp_add_test(
TITLE "Fails if called twice with different content"
SHOULD_FAIL REASON "already exists and is different than new find module."
CONTENTS
    "include(cache/cache_find_module)"
    "_cpp_assert_exists(${path})"
    "_cpp_cache_add_find_module(${src_path} dummy ${input_module})"
)

repository: keipertk/CMakePackagingProject

repo_name: keipertk/CMakePackagingProject

extension: cmake


text:
@inproceedings {type-your-key-here,
  author = "Fernando Benbassat and Paulo Borba and Leopoldo Teixeira",
  booktitle = "X Simpósio Brasileiro de Componentes, Arquitetura e Reutilização de Software (SBCARS 2016)",
  title = "Safe Evolution of Software Product Lines: Feature Extraction Scenarios",
  year = "2016",
  pages = "11-20"
}

repository: pauloborba/academic-kickstart

repo_name: pauloborba/academic-kickstart


text:
require firmware.inc
require firmiszip.inc

ARM_INSTRUCTION_SET = "arm"

PR = "r0"

DL_URI = "http://downloadcenter.samsung.com/content/FM/201001/20100115170121859/2009_DTV_128M_firmware.exe"

# S = "${WORKDIR}/${MACHINE}"

# exe.img is squashfs, so editing rc.local is no problem
# P_OFFSET = ""
# P_LINE = ";/mtd_rwarea/rcSGO     &"
require firmware-package.bbclass

repository: metalsky/SamyGO

repo_name: metalsky/SamyGO


text:
require qt5-${PV}.inc
require ${PN}.inc

SRC_URI[md5sum] = "8bf9b65e5a586091d0ce9f9107367f4a"
SRC_URI[sha256sum] = "62e790029ddf0c5eea7623958ef97144b3c94113cab1e9fa5fbf326625dba3bf"


text:
@ARTICLE{Kay2013moocs76,
	publisher = {IEEE Computer Society},
	doi = {http://doi.ieeecomputersociety.org/10.1109/MIS.2013.66},
	title = {{MOOC}s: So Many Learners, So Much Potential ...},
	journal = {IEEE Intelligent Systems},
	author = {Judy Kay and Peter Reimann and Elliot Diebold and Bob Kummerfeld},
	number = {3},
	volume = {28},
	year = {2013},
	pages = {70-77},
	issn = {1541-1672},
}
@inproceedings{assad2007personisad,
  title={PersonisAD: Distributed, active, scrutable model framework for context-aware services},
  author={Assad, Mark and Carmichael, David J and Kay, Judy and Kummerfeld, Bob},
  booktitle={International Conference on Pervasive Computing},
  pages={55--72},
  year={2007},
  organization={Springer, Berlin, Heidelberg}
}

repository: JKAY-GitHub/MyWeb

repo_name: JKAY-GitHub/MyWeb


text:
require avahi.inc
PR = "${INC_PR}.0"

DEPENDS += "avahi gtk+"

AVAHI_GTK = "--enable-gtk"

S = "${WORKDIR}/avahi-${PV}"

PACKAGES = "${PN} ${PN}-dbg"

FILES_${PN} = "${libdir}/libavahi-ui*.so.*"
FILES_${PN}-dbg += "${libdir}/.debug/libavah-ui*"

SRC_URI[md5sum] = "a83155a6e29e3988f07e5eea3287b21e"
SRC_URI[sha256sum] = "9220d974f5515b8ccfa3900cd72cedcac0fa4cc87ca3c64405f7c55346cbba59"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD


text:
@article{Covington12,
  Author = "M. A. Covington and R. Bagnara and R. A. O'Keefe
            and J. Wielemaker and S. Price",
  Title = "Coding Guidelines for {Prolog}",
  Journal = "Theory and Practice of Logic Programming",
  Publisher = "Cambridge University Press",
  Volume = 12,
  Number = 6,
  Pages = "889--927",
  Address = "New York",
  Year = 2012,
  ISSN = "1471-0684",
  Abstract = "Coding standards and good practices are fundamental to a
              disciplined approach to software projects, whatever
              programming languages they employ. Prolog programming
              can benefit from such an approach, perhaps more than
              programming in other languages. Despite this, no widely
              accepted standards and practices seem to have emerged up
              to now. The present paper is a first step towards
              filling this void: it provides immediate guidelines for
              code layout, naming conventions, documentation, proper
              use of Prolog features, program development, debugging
              and testing.  Presented with each guideline is its
              rationale and, where sensible options exist,
              illustrations of the relative pros and cons for each
              alternative. A coding standard should always be selected
              on a per-project basis, based on a host of issues
              pertinent to any given programming project; for this
              reason the paper goes beyond the mere provision of
              normative guidelines by discussing key factors and
              important criteria that should be taken into account
              when deciding on a fully-fledged coding standard for the
              project.",
}

@book{Console97,
 Author = {Luca Console and Evelina Lamma and Paola Mello and Michela Milano},
 Title = {Programmazione logica e Prolog},
 Publisher = {UTET Università},
 Year = {1997}
}

@article{Cristia16,
	Author = {Maximiliano Cristiá},
	Year = {2016},
	Month = {01},
	Title = {Introducción a la notación Z}
}

@online{SetLog,
 Author = {Maximiliano Cristià and Gianfranco Rossi},
 Title = {\{log\}},
 Url = {http://people.dmi.unipr.it/gianfranco.rossi/setlog.Home.html}
}

@article{Rossi18,
 Author = "Maximiliano Cristià and Gianfranco Rossi",
 Title = "Solving Quantifier-Free First-Order Constraints Over Finite Sets and Binary Relations",
 Journal = "Journal of Automated Reasoning",
 Publisher = "in corso di pubblicazione",
 Year = "2019"
}

@online{MetalevelDCG,
	Author = {MetaLevel},
	Title = {Prolog DCG Primer},
	Url = {https://www.metalevel.at/prolog/dcg}
}

@article{DeSantis17,
	Author = {Lorenzo De Santis and Gianfranco Rossi},
	Year = {2017},
	Title = {Da Specifiche Z a Programmi Java tramite JSetL}
}

@article{Dovier00,
 Author = {Agostino Dovier and Carla Piazza and Enrico Pontelli and Gianfranco Rossi},
 Title = {Sets and Constraint Logic Programming},
 Journal = "ACM Transaction on Programming Language and Systems",
 Volume = 22,
 Number = 5,
 Pages = "861-931",
 Year = {2000}
}

@online{JSetL,
 Author = {Gianfranco Rossi},
 Title = {JSetL},
 Url = {http://cmt.math.unipr.it/jsetl.html}
}

@online{PicatGuide,
 Author = {Neng-Fa Zhou and Jonathan Fruhman},
 Title = {A User’s Guide to Picat (version 2.6)},
 Year = {2019},
 Url = {http://picat-lang.org/}
}

@online{PicatLang,
 Author = {Neng-Fa Zhou and Jonathan Fruhman},
 Title = {Picat},
 Url = {http://picat-lang.org/}
}

repository: lparolari/bachelor-thesis

repo_name: lparolari/bachelor-thesis

gha_language: TeX


text:
@inproceedings{steuwer2015generating,
 author = {Michel Steuwer and Christian Fensch and Sam Lindley and Christophe Dubach},
 booktitle = {Proceedings of the 20th ACM SIGPLAN International Conference on Funcational Programming},
 corerank = {A*},
 keywords = {reviewed},
 note = {29% acceptance rate (35/119)},
 series = {ICFP},
 title = {Generating Performance Portable Code using Rewrite Rules: From High-Level Functional Expressions to High-Performance OpenCL Code},
 year = {2015}
}

repository: cdubach/academic-kickstart

repo_name: cdubach/academic-kickstart


text:
@article {type-your-key-here,
  author = "Márcio Ribeiro and Felipe Queiroz and Paulo Borba and Társis Toledo and Claus Brabrand and Sérgio Soares",
  journal = "ACM SIGPLAN Notices",
  title = "On the impact of feature dependencies when maintaining preprocessor-based software product lines",
  year = "2012",
  pages = "23-32"
}


text:
@Article{pmid10833476,
  Author="Colombel, J. F.  and Ferrari, N.  and Debuysere, H.  and Marteau, P.  and Gendre, J. P.  and Bonaz, B.  and Soule, J. C.  and Modigliani, R.  and Touze, Y.  and Catala, P.  and Libersa, C.  and Broly, F. ",
  Title="{{G}enotypic analysis of thiopurine {S}-methyltransferase in patients with {C}rohn's disease and severe myelosuppression during azathioprine therapy}",
  Journal="Gastroenterology",
  Year="2000",
  Volume="118",
  Number="6",
  Pages="1025--1030",
  Month="Jun"
}

repository: larmcr/px

repo_name: larmcr/px


text:
DESCRIPTION = "Lightweight and High Performance WebServer"
SECTION = "console/network"
LICENSE = "GPL"
RDEPENDS_${PN} = "mime-support"
RPROVIDES_${PN} = "httpd"
PR = "r4"

SRC_URI = "http://www.boa.org/boa-${PV}.tar.gz \
           file://cgi.patch;striplevel=2 \
           file://debian-patch.diff;striplevel=2 \
           file://boa.conf \
           file://boa.init"

S = "${WORKDIR}/boa-${PV}/src"

inherit autotools update-rc.d

INITSCRIPT_NAME = "boa"
INITSCRIPT_PARAMS = "defaults 20"

CFLAGS_append = " -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE"
#CFLAGS_append = " -DSERVER_ROOT=..."

do_install() {
	install -d ${D}${sbindir}
	install -d ${D}${libdir}/${PN}
	install -m 0755 boa 			${D}${sbindir}
	install -m 0755 boa_indexer 		${D}${libdir}/${PN}

	install -d ${D}${sysconfdir}/${PN}
	install -d ${D}${sysconfdir}/init.d
	install -m 0640 ${WORKDIR}/boa.conf 	${D}${sysconfdir}/${PN}
	install -m 0755 ${WORKDIR}/boa.init	${D}${sysconfdir}/init.d/boa

	install -d ${D}${mandir}/man8
	install -m 0644 ${S}/../docs/boa.8 ${D}${mandir}/man8
}

SRC_URI[md5sum] = "c8d6f46f9aa60909f171529068813fe0"
SRC_URI[sha256sum] = "e00bb50eb859c736f2afc913976e82e8fc68a1fbe34fa294e014aa95f4d87366"


text:
@article{Chen2009Application,
 abstract = {Recently, with development of computer technology, the application field of near-infrared image processing becomes much wider. In this paper the technical characteristic and development of modern NIR imaging and NIR spectroscopy analysis were introduced. It is concluded application and studying of the NIR imaging processing technique in the agricultural engineering in recent years, base on the application principle and developing characteristic of near-infrared image. The NIR imaging would be very useful in the nondestructive external and internal quality inspecting of agricultural products. It is important to detect stored-grain insects by the application of near-infrared spectroscopy. Computer vision detection base on the NIR imaging would be help to manage food logistics. Application of NIR imaging promoted quality management of agricultural products. In the further application research fields of NIR image in the agricultural engineering, Some advices and prospect were put forward.},
 author = {Chen, Ming Hong and Zhang, Guo Ping and Xia, Hongxing},
 journal = {Proceedings of Spie the International Society for Optical Engineering},
 keywords = {Engineering;Image processing;Near infrared;Agriculture;Computer vision technology;Computing systems;Near infrared spectroscopy;Spectroscopy},
 pages = {2},
 title = {Application of near-infrared image processing in agricultural engineering},
 volume = {7489},
 year = {2009}
}

repository: sean-xia/academic-kickstart

repo_name: sean-xia/academic-kickstart


text:
require dpkg.inc
PR = "r0"
DEPENDS += "zlib-native"
SRC_URI += "file://noman.patch;patch=1"

inherit native

EXTRA_OECONF = "--without-static-progs \
		--without-dselect \
		--with-start-stop-daemon \
		--with-zlib \
		--with-bz2lib \
                --without-selinux \
		--without-sgml-doc"

repository: jdegges/gumstix-pip-oe

repo_name: jdegges/gumstix-pip-oe


text: @article{huffer_graham_2017, title={The Insta-Dead: The rhetoric of the human remains trade on Instagram}, DOI={10.11141/ia.45.5}, number={45}, journal={Internet Archaeology}, author={Huffer, Damien and Graham, Shawn}, year={2017}}

gha_language: Jupyter Notebook


text:
@inproceedings{Jeong2015,
author = {Jeong, S and Bradley, BA},
booktitle = {2015 NZSEE Conference},
title = {{Simulation of systematic site amplification effects observed at Heathcote Valley during the 2010-2011 Canterbury earthquake sequence}},
url = {http://www.nzsee.org.nz/db/2015/Papers/O-05{\_}Jeong.pdf},
year = {2015}
}

repository: seokhojeong/academic-kickstart

repo_name: seokhojeong/academic-kickstart


text:
require recipes-bsp/u-boot/u-boot.inc

DESCRIPTION = "U-Boot for Turris Omnia"
LICENSE = "GPLv2+"
LIC_FILES_CHKSUM = "file://README;md5=030fd86c891b64ce88b7aa3cff0fbd44"

PROVIDES += "u-boot"

DEPENDS_append = " dtc-native"

DEPENDS_dunfell += " bison bison-native bc-native"

SRC_URI = " \
    git://git@gitlab.labs.nic.cz/turris/turris-omnia-uboot;branch=${SRCBRANCH};protocol=https \
"

SRCBRANCH = "omnia-2019"
SRCREV = "c3cbc14686bbc97a60a72b5dc7d5749b0cce8fbe"

S = "${WORKDIR}/git"

COMPATIBLE_MACHINE = "turris"
PACKAGES += "u-boot"

repository: scthunderbolt/meta-turris

repo_name: scthunderbolt/meta-turris


text:
DESCRIPTION = "Start, stop and select softcams."
MAINTAINER = "PLi team"

PACKAGES = "${PN}"
#ALLOW_EMPTY_${PN} = "1"

PV = "1"
PR = "r1"
# SRC_URI = 'file://*'

INITSCRIPT_NAME = "softcam"
INITSCRIPT_PARAMS = "defaults 50"
inherit update-rc.d

FILES_${PN} = "/etc"

do_install() {
	install -d ${D}/etc/init.d
	install -m 755 ${S}/softcam.None ${D}/etc/init.d/softcam.None
	ln -s softcam.None ${D}/etc/init.d/softcam
}

do_compile_append() {
	echo "# Placeholder for no cam" > ${S}/softcam.None
}

gha_language: C


text:
DESCRIPTION = "This module provides a protocol-independent way to use IPv4 and IPv6 \
sockets, intended as a replacement for IO::Socket::INET. Most constructor \
arguments and methods are provided in a backward-compatible way. For a list \
of known differences, see the "IO::Socket::INET" INCOMPATIBILITES section \
below."

SECTION = "libs"
LICENSE = "Artistic-1.0 | GPL-1.0-or-later"
PR = "r0"

MAINTAINER=	"Poky <poky@yoctoproject.org>"
HOMEPAGE=	"https://metacpan.org/release/IO-Socket-IP"

LIC_FILES_CHKSUM = "file://${COMMON_LICENSE_DIR}/Artistic-1.0;md5=cda03bbdc3c1951996392b872397b798 \
file://${COMMON_LICENSE_DIR}/GPL-1.0-or-later;md5=30c0b8a5048cc2f4be5ff15ef0d8cf61"

SRC_URI = "https://cpan.metacpan.org/authors/id/P/PE/PEVANS/IO-Socket-IP-0.41.tar.gz"

SRC_URI[md5sum] = "629947f8b86b08b7a636bd7ccc3d4925"
SRC_URI[sha256sum] = "849a45a238f8392588b97722c850382c4e6d157cd08a822ddcb9073c73bf1446"
DEPENDS += "module-build-perl-native"

S = "${WORKDIR}/IO-Socket-IP-${PV}"

inherit cpan_build allarch

BBCLASSEXTEND = "native"

repository: rehsack/meta-cpan

repo_name: rehsack/meta-cpan


text:
DESCRIPTION = "Shows the battery/AC status in the Openmoko panel"
DEPENDS = "apmd libnotify"
PV = "0.1.1+svn${SVNREV}"

inherit openmoko-panel-plugin


text:
@article{Gleeson-2020-Illuminating,
    title = "Illuminating water cycle modifications and Earth system resilience in the Anthropocene",
    author = {Gleeson, Tom  and
      Wang‐Erlandsson, Lan  and
      Porkka, Miina  and
      Zipper, Samuel C.  and
      Jaramillo, Fernando  and
      Gerten, Dieter  and
      Fetzer, Ingo  and
      Cornell, Sarah E.  and
      Piemontese, Luigi  and
      Gordon, Line J.  and
      Rockstr{\"o}m, Johan  and
      Oki, Taikan  and
      Sivapalan, Murugesu  and
      Wada, Yoshihide  and
      Brauman, Kate A.  and
      Fl{\"o}rke, Martina  and
      Bierkens, Marc F. P.  and
      Lehner, Bernhard  and
      Keys, Patrick  and
      Kummu, Matti  and
      Wagener, Thorsten  and
      Dadson, Simon  and
      Troy, Tara J.  and
      Steffen, Will  and
      Falkenmark, Malin  and
      Famiglietti, James S.},
    journal = "Water Resources Research, Volume 56, Issue 4",
    volume = "56",
    number = "4",
    year = "2020",
    publisher = "American Geophysical Union (AGU)",
    url = "https://aclanthology.org/G20-79001",
    doi = "10.1029/2019wr024957",
    abstract = "Fresh water {--} the bloodstream of the biosphere {--} is at the centre of the planetary drama of the Anthropocene. Water fluxes and stores regulate the Earth{'}s climate and are essential for thriving aquatic and terrestrial ecosystems, as well as water, food and energy security. But the water cycle is also being modified by humans at an unprecedented scale and rate. A holistic understanding of freshwater{'}s role for Earth System resilience and the detection and monitoring of anthropogenic water cycle modifications across scales is urgent, yet existing methods and frameworks are not well suited for this. In this paper we highlight four core Earth System functions of water (hydroclimatic regulation, hydroecological regulation, storage, and transport) and key related processes. Building on systems and resilience theory, we review the evidence of regional-scale regime shifts and disruptions of the Earth System functions of water. We then propose a framework for detecting, monitoring, and establishing safe limits to water cycle modifications, and identify four possible spatially explicit methods for their quantification. In sum, this paper presents an ambitious scientific and policy Grand Challenge that could substantially improve our understanding of the role of water in the Earth System and cross-scale management of water cycle modifications that would be a complementary approach to existing water management tools.",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications


text:
@inproceedings{yaosheng2018adversarial,
  title = {Adversarial Learning for Chinese NER from Crowd Annotations},
  author = {Yaosheng Yang and Meishan Zhang and Wenliang Chen and Wei Zhang and Haofen Wang and Min Zhang},
  booktitle={AAAI},
  year = {2018},
  url = {https://www.aaai.org/ocs/index.php/AAAI/AAAI18/paper/viewFile/16427/15862}
}

url: https://raw.githubusercontent.com/Hugh-Shi/DL-NLP-Readings/924e4d189e5660c5b5d4854278f3df755ae2231d/Bibtex/Adversarial Learning for Chinese NER from Crowd Annotations.bib

repository: Hugh-Shi/DL-NLP-Readings

repo_name: Hugh-Shi/DL-NLP-Readings


text:
require xorg-lib-common.inc

DESCRIPTION = "X11 Inter-Client Exchange library"
DEPENDS += "xproto xtrans"
PROVIDES = "ice"
PR = "r1"
PE = "1"

XORG_PN = "libICE"


text:
@charset "UTF-8";
html {
  position: relative;
  min-height: 100%;
}

body {
  height: 100%;
}

/* scroll-to-top */
.scroll-to-top {
  position: fixed;
  right: 15px;
  bottom: 15px;
  display: none;
  width: 50px;
  height: 50px;
  text-align: center;
  color: #fff;
  background: rgba(52, 58, 64, 0.5);
  line-height: 46px;
}
.scroll-to-top:focus, .scroll-to-top:hover {
  color: white;
}
.scroll-to-top:hover {
  background: #343a40;
}
.scroll-to-top i {
  font-weight: 800;
}

.smaller {
  font-size: 0.7rem;
}

.o-hidden {
  overflow: hidden !important;
}

.z-0 {
  z-index: 0;
}

.z-1 {
  z-index: 1;
}

/* menu navbar hide */
/* .active {
  background-color: #4CAF50;
} */

#navbar {
  overflow: hidden;
  background-color: #555;
  z-index: 9999;
  position: fixed;
  top:0px;
  width: 100%;
  box-shadow: 0 0 3px #b4b4b4;
  transition: all ease-out 0.5s;
  -webkit-transition: all ease-out 0.5s;
  -moz-transition: all ease-out 0.5s;
  transition: all ease-out 0.5s;
}

#navbar a {
  float: left;
  display: block;
  color: #b4b4b4;
  text-align: center;
  padding: 15px;
  text-decoration: none;
}

#navbar a:hover {
  /* background-color: #000; */
  color: white;
}

.container-fluid {
  margin: 5em auto;
  text-align: justify;
}

.container {
  margin: 5em auto;
  text-align: justify;
}

.topnav {
  background-color: #333;
  overflow: hidden;
}

.topnav-right {
  float: right;
}

repository: avhimkov/MaxLog

repo_name: avhimkov/MaxLog

gha_language: Go

extension: css


text:
@inproceedings{langer:dha:2017,
 author = {Barbara Laner and Andy Stauder and Eva Zangerle and Theo Hug},
 booktitle = {4th Digital Humanities Conference Austria (DHA17)},
 title = {Visualization Strategies for Digital Archives. The Case of the Ernst-von-Glasersfeld-Archive},
 year = {2017}
}


text:
@book{eksploracja_danych,
    author = "Tadeusz Morzy",
    title = "Eksploracja danych. Metody i algorytmy",
    year = "2013"

}

@article{Tan_et_al,
    author = "Li Yan, Hai-Tao Zhang, [...], Ye Yuan",
    title = "An interpretable mortality prediction model for COVID-19 patients",
    journal = "Nature Machine Intelligence",
    year = "2020",
    url = "https://www.nature.com/articles/s42256-020-0180-7"
}

@article{art1,
    author = "Brandon Michael Henry, Maria Helena Santos de Oliveira, Stefanie Benoit, Mario Plebani, Giuseppe Lippi",
    title = "Hematologic, biochemical and immune biomarker abnormalities associated with severe illness and mortality in coronavirus disease 2019 (COVID-19): a meta-analysis",
    year = "2020",
    url = "https://pubmed.ncbi.nlm.nih.gov/32286245/"
}

@article{art2,
    author = "Leiwen Fu, Bingyi Wang, Tanwei Yuan, [...], Huachun Zou",
    title = "Clinical characteristics of coronavirus disease 2019 (COVID-19) in China: A systematic review and meta-analysis",
    year = "2020",
    url = "https://pubmed.ncbi.nlm.nih.gov/32283155/"
}

@article{art3,
    author = "Giuseppe Lippi, Mario Plebani, Brandon Michael Henry",
    title = "Thrombocytopenia is associated with severe coronavirus disease 2019 (COVID-19) infections: A meta-analysis",
    year = "2020",
    url = "https://pubmed.ncbi.nlm.nih.gov/32178975/"
}

@url{url1,
    title = "Hemoglobina - jaki jest jej prawidłowy poziom?",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/hemoglobina-jaki-jest-jej-prawidlowy-poziom/w-433"
}

@url{url2,
    author = "lek. med. Klaudia Knap",
    title = "Troponiny sercowe",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/152291,troponiny-sercowe"
}

@url{url3,
    author = "lek. Kornel Gajewski",
    title = "Chlorki",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/171833,chlorki"
}

@url{url4,
    author = "lek. med. Klaudia Knap",
    title = "Czas protrombinowy i INR",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/152270,czas-protrombinowy-i-inr"
}

@url{url5,
    author = "Monika Majewska",
    title = "Prokalcytonina (PCT) - normy i wyniki badania",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/prokalcytonina-pct-normy-i-wyniki-badania-aa-5gM9-PEpJ-vpji.html"
}

@url{url6,
    author = "lek. Mariusz Basiura",
    title = "Eozynofile (eozynocyty, EOS): podwyższone lub poniżej normy",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/eozynofile-eozynocyty-eos-podwyzszone-lub-ponizej-normy-aa-sAcV-QXWn-EJti.html"
}

@article{art4,
    author = "Irina Bosek, Roman Kuczerowski, Tomasz Miłek, [...], Paweł Piątkiewicz",
    title = "Stężenie interleukiny 2 i interleukiny 10 u pacjentów z cukrzycą typu 2 i rakiem okrężnicy",
    year = "2020",
    url = "https://journals.viamedica.pl/diabetologia_praktyczna/article/download/58009/43758"
}

@url{url7,
    author = "",
    title = "Fosfataza alkaliczna (ALP)",
    year = "2020",
    url = "https://www.medicover.pl/badania/fosfataza-alkaliczna/"
}

@url{url8,
    author = "lek. Aleksandra Witkowska",
    title = "Albuminy",
    year = "2020",
    url = "https://www.medonet.pl/badania,albuminy,artykul,1570119.html"
}

@url{url9,
    author = "",
    title = "Bazofile (granulocyty zasadochłonne) - normy. Co oznacza wysoki lub niski poziom bazofili?",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/bazofile-granulocyty-zasadochlonne-normy-co-oznacza-wysoki-lub-niski-poziom-bazofili/w-612"
}

@url{url10,
    author = "lek. Beata Wańczyk-Dręczewska",
    title = "Bilirubina",
    year = "2020",
    url = "https://www.medonet.pl/badania,bilirubina-calkowita---norma-badania--podwyzszona-bilirubina,artykul,1570127.html"
}

@url{url11,
    author = "Andrzej Dębski, lek. Paweł Żmuda-Trzebiatowski",
    title = "Trombocyty. Płytki krwi, zaburzenia krzepnięcia i inne schorzenia",
    year = "2020",
    url = "https://www.medonet.pl/zdrowie/zdrowie-dla-kazdego,plytki-krwi--trombocyty--plt---norma--niski-i-wysoki-poziom,artykul,1719033.html"
}

@url{url12,
    author = "lek. Tomasz Nęcki",
    title = "Monocyty (MONO) - rola, norma, nadmiar i niedobór",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/monocyty-mono-rola-norma-nadmiar-i-niedobor-aa-FvLD-BrBi-DChY.html"
}

@url{url13,
    author = "Marta Pawlak, lek. Aleksandra Witkowska",
    title = "Antytrombina - kiedy sprawdzić jej aktywność i stężenie?",
    year = "2020",
    url = "https://www.medonet.pl/badania,antytrombina---kiedy-sprawdzic-jej-aktywnosc-i-stezenie-,artykul,1734857.html"
}

@url{url14,
    author = "",
    title = "Bilirubina pośrednia badanie",
    year = "2020",
    url = "https://www.synevo.pl/bilirubina-posrednia/"
}

@url{url15,
    author = "lek. Tomasz Nęcki",
    title = "Wskaźnik RDW SD (wskaźnik rozkładu objętości erytrocytów) - normy",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/wskaznik-rdw-sd-wskaznik-rozkladu-objetosci-erytrocytow-normy-aa-9gN7-txfr-Ahbo.html"
}

@url{url16,
    author = "Monika Majewska",
    title = "Neutrofile: normy. Podwyższony, obniżony poziom NEUT",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/neutrofile-normy-podwyzszony-obnizony-poziom-neut-aa-EzVK-Qfpg-QhBs.html"
}

@url{url17,
    author = "dr n. med. Karolina Karabin",
    title = "Białko całkowite - normy w badaniu biochemicznym",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/bialko-calkowite-normy-w-badaniu-biochemicznym-aa-tj5J-sRC7-u7oy.html"
}

@url{url18,
    author = "",
    title = "Kiła (Treponema pallidum), VDRL, monitorowanie leczenia",
    year = "2020",
    url = "https://diag.pl/sklep/badania/kila-treponema-pallidum-vdrl/"
}

@url{url19,
    author = "",
    title = "HBsAg – wykrywa zakażenie WZW typu B",
    year = "2020",
    url = "https://www.medonet.pl/badania,hbsag---wykrywa-zakazenie-wzw-typu-b,artykul,1733281.html"
}

@url{url20,
    author = "",
    title = "MCV (średnia objętość erytrocytów) - normy, wysoki i niski poziom",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/mcv-srednia-objetosc-erytrocytow-normy-wysoki-i-niski-poziom/w-1327"
}

@url{url21,
    author = "Justyna Mazur",
    title = "TNF alfa (czynnik martwicy nowotworu) – badanie, norma, leczenie",
    year = "2020",
    url = "https://wylecz.to/badania-laboratoryjne/tnf-alfa-czynnik-martwicy-nowotworu-badanie-norma-leczenie/"
}

@url{url22,
    author = "",
    title = "Hematokryt (HCT) – normy. Co oznacza niski i wysoki poziom HCT?",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/hematokryt-hct-normy-co-oznacza-niski-i-wysoki-poziom-hct/w-603"
}

@url{url23,
    author = "Marlena Kostyńska, lek. Aleksandra Witkowska",
    title = "Leukocyty. Kiedy wykonać badanie? O czym świadczą wyniki?",
    year = "2020",
    url = "https://www.medonet.pl/badania,leukocyty---rodzaje--badanie-krwi--normy--obecnosc-w-moczu,artykul,1570110.html"
}

@url{url24,
    author = "Katarzyna Pawlikowska-Łagód, lek. Beata Wańczyk-Dręczewska",
    title = "MCHC (średnie stężenie hemoglobiny w krwince czerwonej) - normy, nadmiar, leczenie",
    year = "2020",
    url = "https://www.medonet.pl/badania,mchc---srednie-stezenie-hemoglobiny-w-krwince-czerwonej,artykul,1570107.html#mchc-ponizej-normy"
}

@url{url25,
    author = "Marlena Kostyńska, lek. Paweł Żmuda-Trzebiatowski",
    title = "Fibrynogen – kiedy oznaczamy, przebieg badania, odstępstwa od normy",
    year = "2020",
    url = "https://www.medonet.pl/badania,fibrynogen---kiedy-oznaczamy--przebieg-badania--odstepstwa-od-normy,artykul,1570274.html"
}

@url{url26,
    author = "",
    title = "Interleukiny - rodzaje, funkcje, rola w powstawaniu chorób autoimmunologicznych",
    year = "2020",
    url = "https://centermed.pl/news/631,Interleukiny__rodzaje_funkcje_rola_w_powstawaniu_chorob_autoimmunologicznych"
}

@url{url27,
    author = "Andrzej Jurewicz",
    title = "Mocznik, azot mocznikowy - badanie, normy. Obniżone i podwyższone stężenie mocznika",
    year = "2020",
    url = "https://www.medonet.pl/badania,mocznik-we-krwi--bun----norma-badania,artykul,1570136.html"
}

@url{url28,
    author = "lek. Monika Dąbrowska",
    title = "Limfocyty - czym są, jakie są normy, co oznacza spadek poziomu limfocytów",
    year = "2020",
    url = "https://enel.pl/enelzdrowie/zdrowie/limfocyty-czym-sa-jakie-sa-normy-co-oznacza-spadek-poziomu-limfocytow"
}

@url{url29,
    author = "Natasza Socha-Chyrzyński",
    title = "Gazometria: wyniki i normy pH krwi",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/gazometria-wyniki-i-normy-ph-krwi-aa-6EWC-V3wE-QRN5.html"
}

@url{url30,
    author = "",
    title = "Erytrocyty (czerwona krwinki) - jaka jest ich prawidłowa ilość?",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/erytrocyty-czerwona-krwinki-jaka-jest-ich-prawidlowa-ilosc/w-473"
}

@url{url31,
    author = "",
    title = "Eozynofil",
    year = "2020",
    url = "https://pl.wikipedia.org/wiki/Eozynofil"
}

@url{url32,
    author = "Mirosława Nowacka",
    title = "Wapń całkowity, zjonizowany i skorygowany",
    year = "2020",
    url = "http://odiagnostyce.pl/2016/08/20/wapn-calkowity-zjonizowany-i-skorygowany"
}

@url{url33,
    author = "dr n. med. Ewa Talarek",
    title = "Badanie stężenia potasu w surowicy krwi",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/174203,badanie-stezenia-potasu-w-surowicy-krwi"
}

@url{url34,
    author = "",
    title = "Glukoza",
    year = "2020",
    url = "https://www.medonet.pl/badania,glukoza-we-krwi---badanie-glukozy-w-surowicy--norma,artykul,1570132.html"
}

@url{url35,
    author = "",
    title = "Neutrofile poniżej normy. Jakie są przyczyny?",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/neutrofile-ponizej-normy-jakie-sa-przyczyny/w-614"
}

@url{url36,
    author = "",
    title = "Bilirubina bezpośrednia (sprzężona) - objawy, leczenie i badania",
    year = "2020",
    url = "https://www.doz.pl/zdrowie/h11103-Bilirubina_bezposrednia_sprzezona"
}

@url{url37,
    author = "lek. Piotr Podwysocki",
    title = "MPV - norma, podwyższone, poniżej normy",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/mpv-morfologia-norma-podwyzszone-ponizej-normy-aa-Mdz2-jMCL-HTi5.html"
}

@url{url38,
    author = "",
    title = "Ferrytyna - normy i znaczenie dla zdrowia",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/ferrytyna-normy-i-znaczenie-dla-zdrowia/w-963"
}

@url{url39,
    author = "Marta Pawlak, lek. Aleksandra Witkowska",
    title = "RDW-SD - oznaczanie, wskazania, norma, analiza wyników",
    year = "2020",
    url = "https://www.medonet.pl/zdrowie,rdw-sd---oznaczanie--wskazania--norma--analiza-wynikow,artykul,1733018.html"
}

@url{url40,
    author = "Marlena Kostyńska, lek. Paweł Żmuda-Trzebiatowski",
    title = "Czas trombinowy (TT) – krzepnięcie krwi, przebieg badania, odstępstwa od normy",
    year = "2020",
    url = "https://www.medonet.pl/badania,czas-trombinowy--tt----krzepniecie-krwi--przebieg-badania--odstepstwa-od-normy,artykul,1734547.html"
}

@url{url41,
    author = "Sara Janowska",
    title = "Limfocytoza - o czym świadczy zbyt wysoki poziom limfocytów?",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/limfocytoza-o-czym-swiadczy-zbyt-wysoki-poziom-limfocytow-aa-K94G-LDUH-GUH2.html"
}

@url{url42,
    author = "",
    title = "HCV RNA met. real time RT- PCR, ilościowo",
    year = "2020",
    url = "https://diag.pl/sklep/badania/hcv-met-pcr-ilosciowo/"
}

@url{url43,
    author = "",
    title = "D-dimery: norma, badanie i wyniki. Przyczyny podwyższonych?",
    year = "2020",
    url = "https://www.medme.pl/artykuly/d-dimery-norma-badanie-i-wyniki-przyczyny-podwyzszonych,73373.html"
}

@url{url44,
    author = "",
    title = "Cholesterol całkowity",
    year = "2020",
    url = "https://www.medicover.pl/badania/cholesterol-calkowity/#cholesterol_calkowity_norma"
}

@url{url45,
    author = "",
    title = "AST, AspAT, czyli aminotransferaza asparaginianowa - normy",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/aspat-czyli-aminotransferaza-asparaginianowa-norm-aa-jJJ4-jnLP-6cmP.html"
}

@url{url46,
    author = "lek. Beata Wańczyk-Dręczewska",
    title = "Kwas moczowy",
    year = "2020",
    url = "https://www.medonet.pl/badania,kwas-moczowy-we-krwi---norma-badania-w-surowicy,artykul,1570135.html"
}

@url{url47,
    author = "lek. Zuzanna Łagódka",
    title = "Gazometria - czym jest to badanie?",
    year = "2020",
    url = "https://enel.pl/enelzdrowie/zdrowie/gazometria-czym-jest-to-badanie"
}

@url{url48,
    author = "dr n. med. Ewa Talarek",
    title = "Badanie stężenia wapnia w surowicy krwi",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/174223,badanie-stezenia-wapnia-w-surowicy-krwi"
}

@url{url49,
    author = "",
    title = "NT pro-BNP – charakterystyka, wskazania do badania, przeprowadzenie badania, norma, interpretacja wyników",
    year = "2020",
    url = "https://portal.abczdrowie.pl/nt-pro-bnp-charakterystyka-wskazania-do-badania-przeprowadzenie-badania-norma-interpretacja-wynikow"
}

@url{url50,
    author = "lek. Kornel Gajewski",
    title = "Dehydrogenaza mleczanowa (LDH)",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/171840,dehydrogenaza-mleczanowa-ldh"
}

@url{url51,
    author = "Monika Wasilonek, lek. Aleksandra Witkowska",
    title = "Badanie P-LCR - wskazania do wykonania i normy",
    year = "2020",
    url = "https://www.medonet.pl/zdrowie,badanie-p-lcr---wskazania-do-wykonania-i-normy,artykul,1733026.html#badanie-p-lcr-normy"
}

@url{url52,
    author = "dr n. med. Karolina Karabin",
    title = "Interleukina-6 - badanie, znaczenie i normy",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/zdrowie/uklad-odpornosciowy/interleukina-6-badanie-znaczenie-i-normy-aa-MVWT-gjDc-7RUx.html"
}

@url{url53,
    author = "",
    title = "Produkty degradacji fibrynogenu/fibryny (FDP, ang. fibrin/fibrinogen degradation products)",
    year = "2020",
    url = "https://www.medonet.pl/badania,produkty-degradacji-fibrynogenu-fibryny--fdp--ang--fibrin-fibrinogen-degradation-products-,artykul,1570240.html#interpretacja-wynikow-badan"
}

@url{url54,
    author = "lek. Aleksandra Chachowska, lek. Paweł Żmuda-Trzebiatowski",
    title = "Monocyty. Kiedy warto je zbadać?",
    year = "2020",
    url = "https://www.medonet.pl/zdrowie/zdrowie-dla-kazdego,monocyty---norma--podwyzszone--za-wysokie--powyzej-normy-,artykul,1655749.html"
}

@url{url55,
    author = "",
    title = "PDW (Morfologia krwi) - norma, podwyższone i obniżone PDW",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/pdw-morfologia-krwi-norma-podwyzszone-i-obnizone-pdw/w-1452"
}

@url{url56,
    author = "lek. Aleksandra Witkowska",
    title = "Gamma-globuliny",
    year = "2020",
    url = "https://www.medonet.pl/badania,gamma-globuliny,artykul,1570125.html"
}

@url{url57,
    author = "lek. Kornel Gajewski",
    title = "Gamma-glutamylotranspeptydaza (GGTP)",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/137074,gamma-glutamylotranspeptydaza-ggtp"
}

@url{url58,
    author = "Anna Jarosz",
    title = "Badanie INR - wskazania, wyniki, normy",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/badanie-inr-wskazania-wyniki-normy-aa-gZ2i-NFtB-SSpt.html"
}

@url{url60,
    author = "Katarzyna Pawlikowska-Łagód, lek. Beata Wańczyk-Dręczewska",
    title = "MCHC (średnie stężenie hemoglobiny w krwince czerwonej) - normy, nadmiar, leczenie",
    year = "2020",
    url = "https://www.medonet.pl/badania,mchc---srednie-stezenie-hemoglobiny-w-krwince-czerwonej,artykul,1570107.html"
}

@url{url61,
    author = "Marlena Kostyńska, lek. Beata Wańczyk-Dręczewska",
    title = "Czas kaolinowo-kefalinowy (APTT). Pomiar czasu częściowej tromboplastyny po aktywacji",
    year = "2020",
    url = "https://www.medonet.pl/badania,czas-kaolinowo-kefalinowy--czas-czesciowej-tromboplastyny-po-aktywacji--ang--activated-partial-thromboplastin-time--aptt-,artykul,1570157.html"
}

@url{url62,
    author = "Andrzej Jurewicz",
    title = "Badanie CRP - normy, interpretacja wyników. Podwyższone CRP a diagnostyka chorób",
    year = "2020",
    url = "https://www.medonet.pl/zdrowie/zdrowie-dla-kazdego,crp-badanie---norma-badania-krwi--podwyzszone--wysokie-crp-,artykul,1659270.html#hs-crp-badanie-crp-o-wysokiej-czulosci"
}

@url{url63,
    author = "",
    title = "HIV-1 RNA met. real time RT-PCR, ilościowo",
    year = "2020",
    url = "https://diag.pl/sklep/badania/hiv-1-met-pcr-ilosciowo/"
}

@url{url64,
    author = "dr n. med. Ewa Talarek",
    title = "Badanie stężenia sodu w surowicy krwi",
    year = "2020",
    url = "https://www.mp.pl/pacjent/badania_zabiegi/174208,badanie-stezenia-sodu-w-surowicy-krwi"
}

@url{url65,
    author = "Agnieszka Paculanka",
    title = "OB czyli odczyn Biernackiego. Jakie są normy OB?",
    year = "2020",
    url = "https://www.poradnikzdrowie.pl/sprawdz-sie/badania/ob-odczyn-biernackiego-jakie-sa-normy-ob-aa-ew6R-HroV-s9b2.html"
}

@url{url66,
    author = "",
    title = "Thrombocytocrit",
    year = "2020",
    url = "https://medical-dictionary.thefreedictionary.com/thrombocytocrit"
}

@url{url67,
    author = "lek. Bartosz Domagała",
    title = "Badanie GFR",
    year = "2020",
    url = "https://www.medonet.pl/zdrowie,badanie-gfr---co-to--przygotowanie--wynik--normy,artykul,1728109.html"
}

@url{url68,
    author = "",
    title = "Kreatynina - czym jest? Badanie kreatyniny i normy",
    year = "2020",
    url = "https://lekarzebezkolejki.pl/blog/kreatynina-czym-jest-badanie-kreatyniny-i-normy/w-1328"
}

@url{url69,
    author = "",
    title = "Badanie ALT – norma i wyniki. Co znaczy wysokie alt?",
    year = "2020",
    url = "https://www.medme.pl/artykuly/badanie-alt-badanie-krwi-w-diagnozie-uszkodzen-watroby-norma,67611.html"
}

gha_language: HTML


text:
find_package(X11)
	if(NOT X11_FOUND)
	  message(STATUS "Failed to find X11")
	else()
	 add_definitions(-DTNG_USE_X11=1)
	 set(link_libs ${link_libs} ${X11_LIBRARIES})
	 include_directories ( ${X11_INCLUDE_DIR} )
	 link_directories(${X11_LIBRARY_DIR})
	endif(NOT X11_FOUND)

repository: liangpengcheng/tng

repo_name: liangpengcheng/tng


text:
/* ---
section: Position Utils
title: Introduction
order: -10
---

[![NPM version][npm-image]][npm-url]
[![Dependency Status][daviddm-image]][daviddm-url]

A collection of dynamically generated `position` utility classes.

Class names follow the [Emmet](http://docs.emmet.io/cheat-sheet/) abbreviation
syntax, with colons (':') replaced by two dashes (`--`) to follow BEM naming
conventions (It modifiies the user agent's default position for the element).
E.g., the `position: absolute` utility class name is `.u-pos--a`.

#### Available classes
  - `.u-pos--a` (position: absolute)
  - `.u-pos--f` (position: fixed)
  - `.u-pos--r` (position: relative)
  - `.u-pos--s` (position: static)
  - `.u-pos--stck` (position: sticky)

Additionally, JigSass Position provides the following helpers:
  - `.u-pos--center` Used for vertically and horizontally centering `absolute` and `fixed`
    positioned elements inside their first non-statically positioned ancestor (or `window`).
    Will also work for `relative` positioned elements inside containers with explicit heights.
  - `.u-pos--stretch` Used for stretching `absolute` and `fixed` positioned elements to the
    dimensions of their first non-statically positioned ancestor (or `window`).

#### Installation

Using npm:

```sh
npm i -S jigsass-utils-position
```

#### Usage
Import JigSass Utils Position into your main scss file near its very end, together with all
other utilities (utilities should always be the last to be imported).

```scss
@import 'path/to/jigsass-utils-position/scss/index';
```

Like all other JigSass Utils, JigSass Position does not automatically generate any CSS
when imported. You would need to explicitly indicate that each individual class
should actually be generated in each component or object it is used in
(clarification: This will include style declarations inside `.foo` and .`bar`):

```scss
// _c.foo.scss
.foo {
  @include jigsass-util(u-pos, $modifier: a); // <-- position: absolute

  ...
}
```

```scss
// _c.bar.scss
.bar {
  @include jigsass-util(u-pos, $modifier: r);  // <-- position: relative
  @include jigsass-util(
    u-pos,
    $modifier: f,
    $from: large
  ); // <-- position: fixed, from large bp and on.

  ...
}
```

Doing so helps us a great deal with portability, as no matter where we import component or object
partials, the correct utility classes will be generated. Think of it as a poor man's dependency
management.

Developer communication is also assisted by including "dependencies" wherever they are required,
as anyone going through a partial, can easily understand how it should be marked up with just a
glance.

As far as bloat goes, just don't worry about it - the actual styles will only be generated once,
at the location in the cascade where the Jigsass Position partial was imported into the main file.

JigSass Position classes are responsive-enabled, using [JigSass MQ](https://txhawks.github.io/jigsass-tools-mq/)
and the breakpoints defined in the [$jigsass-breakpoints](https://txhawks.github.io/jigsass-tools-mq/#variable-jigsass-breakpoints) variable.

Based on the breakpoint arguments passed to `jigsass-util` when including a position class, responsive
modifiers are generated according to the following logic:

```scss
.u-pos--<modifier>[-[-from-<breakpoint-name>][-until-<breakpoint-name>][-misc-<breakpoint-name>]]
```

So, assuming the `medium`, `large` and `landscape` breakpoints are defined in `$jigsass-breakpoints`
as `600px`, `1024px` and `(orientation: landscape)` respectively,

```scss
@include jigsass-util(u-pos, $modifier: f);
```
will generate the `.u-pos--f` class, which is not limited to any media-query.

```scss
@include jigsass-util(u-pos, $modifier: f, $until: medium);
```

will generate the `.u-pos--f--until-medium` class, which will be in effect at
`(max-width: 37.49em)` and will override styles in the default class until that point.

```scss
@include jigsass-util(u-pos, $modifier: f, $from: large, $misc: landscape);
```

will generate the `.u-pos--f--from-large-when-landscape` class, which will go into
effect at `(min-width: 64em) and (orientation: landscape)` and will override styles in the default
class under these  conditions.

**License:** MIT

[npm-image]: https://badge.fury.io/js/jigsass-utils-position.svg
[npm-url]: https://npmjs.org/package/jigsass-utils-position

[daviddm-image]: https://david-dm.org/TxHawks/jigsass-utils-position.svg?theme=shields.io
[daviddm-url]: https://david-dm.org/TxHawks/jigsass-utils-position
*/
.u-pos--a {
  position: absolute;
  /* ---
section: Position Utils
title: u-pos--a (absolute)
order: 1
---
A util to modify an element's `position` property value to
`absolute`.

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: absolute[, $from, $until, $misc]);
```

#### Example

```example:html
<div class='fpo u-pos--a'>
  This div position is set to: <em>absolute</em>.
</div>
```
  */
}

.u-pos--f {
  position: fixed;
  /* ---
section: Position Utils
title: u-pos--f (fixed)
order: 2
---
A util to modify an element's `position` property value to
`fixed`.

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: fixed[, $from, $until, $misc]);
```

#### Example

```example:html
<div class='fpo u-pos--f'>
  This div position is set to: <em>fixed</em>.
</div>
```
  */
}

.u-pos--r {
  position: relative;
  /* ---
section: Position Utils
title: u-pos--r (relative)
order: 3
---
A util to modify an element's `position` property value to
`relative`.

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: relative[, $from, $until, $misc]);
```

#### Example

```example:html
<div class='fpo u-pos--r'>
  This div position is set to: <em>relative</em>.
</div>
```
  */
}

.u-pos--s {
  position: static;
  /* ---
section: Position Utils
title: u-pos--s (static)
order: 4
---
A util to modify an element's `position` property value to
`static`.

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: static[, $from, $until, $misc]);
```

#### Example

```example:html
<div class='fpo u-pos--s'>
  This div position is set to: <em>static</em>.
</div>
```
  */
}

.u-pos--stck {
  position: -webkit-sticky;
  position: sticky;
  /* ---
section: Position Utils
title: u-pos--stck (sticky)
order: 5
---
A util to modify an element's `position` property value to
`sticky`.

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: sticky[, $from, $until, $misc]);
```

#### Example

```example:html
<div class='fpo u-pos--stck'>
  This div position is set to: <em>sticky</em>.
</div>
```
  */
}

.u-pos--center {
  left: 50%;
  top: 50%;
  -webkit-transform: translate(-50%, -50%);
      -ms-transform: translate(-50%, -50%);
          transform: translate(-50%, -50%);
  /* ---
section: Position Utils
title: u-pos--center
order: 6 + 100
---
A utility class for vertically and horizontally centering `absolute` and `fixed`
positioned elements inside their first non-statically positioned ancestor (or `window`).
Will also work for `relative` positioned elements inside containers with explicit heights.

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: [, $from, $until, $misc]);
```

#### Example

```example:html
<div class='has-fpo--fixed'>
  <div class='[ fpo fpo--fixed ]  u-pos--center'>
    This div is horizontally and vertically centered inside its container.
  </div>
</div>
```
*/
}

.u-pos--stretch {
  bottom: 0;
  left: 0;
  margin: auto;
  right: 0;
  top: 0;
  /* ---
section: Position Utils
title: u-pos--stretch
order: 7 + 100
---
A utility class for stretching `absolute` and `fixed` positioned elements to the dimensions of
their first non-statically positioned ancestor (or `window`).

#### Include with:

```scss
@include jigsass-util(u-pos, $modifier: [, $from, $until, $misc]);
```

#### Example

```example:html
<div class='has-fpo--fixed'>
  <div class='[ fpo fpo--fixed ]  u-pos--stretch'>
    This div is stretched to cover its container.
  </div>
</div>
```
*/
}

html {
  font-size: 37.5%;
}

body {
  font-size: 2.6666666667em;
  line-height: 4rem;
}

html {
  font-family: sans-serif;
}

body {
  margin: 0 !important;
}

.has-fpo--fixed {
  min-height: 20rem;
  position: relative;
}

.fpo {
  background-color: #09a5d9;
  color: #fff;
  padding: 1rem;
}

.fpo--fixed {
  position: fixed;
}

figure,
ul,
h1,
h2,
h3,
h4,
h5,
h6,
p {
  margin: 0;
  padding: 0;
}

repository: TxHawks/jigsass-utils-position

repo_name: TxHawks/jigsass-utils-position


text:
@inproceedings{qwire,
  title     = {QWIRE: a core language for quantum circuits},
  author    = {Paykin, Jennifer and Rand, Robert and Zdancewic, Steve},
  booktitle = {Proceedings of the 44th ACM SIGPLAN Symposium on Principles of Programming Languages},
  pages     = {846--858},
  year      = {2017}
}

@article{qasm,
  title   = {Open quantum assembly language},
  author  = {Cross, Andrew W and Bishop, Lev S and Smolin, John A and Gambetta, Jay M},
  journal = {arXiv preprint arXiv:1707.03429},
  year    = {2017}
}

@article{Nam_2018,
  title     = {Automated optimization of large quantum circuits with continuous parameters},
  volume    = {4},
  issn      = {2056-6387},
  url       = {http://dx.doi.org/10.1038/s41534-018-0072-4},
  doi       = {10.1038/s41534-018-0072-4},
  number    = {1},
  journal   = {npj Quantum Information},
  publisher = {Springer Science and Business Media LLC},
  author    = {Nam, Yunseong and Ross, Neil J. and Su, Yuan and Childs, Andrew M. and Maslov, Dmitri},
  year      = {2018},
  month     = {May}
}

@inproceedings{qa,
author = {Siraichi, Marcos Yukio and Santos, Vin\'{\i}cius Fernandes dos and Collange, Sylvain and Pereira, Fernando Magno Quintao},
title = {Qubit Allocation},
year = {2018},
isbn = {9781450356176},
publisher = {Association for Computing Machinery},
address = {New York, NY, USA},
url = {https://doi.org/10.1145/3168822},
doi = {10.1145/3168822},
abstract = {In May of 2016, IBM Research has made a quantum processor available in the cloud to the general public. The possibility of programming an actual quantum device has elicited much enthusiasm. Yet, quantum programming still lacks the compiler support that modern programming languages enjoy today. To use universal quantum computers like IBM's, programmers must design low-level circuits. In particular, they must map logical qubits into physical qubits that need to obey connectivity constraints. This task resembles the early days of programming, in which software was built in machine languages. In this paper, we formally introduce the qubit allocation problem and provide an exact solution to it. This optimal algorithm deals with the simple quantum machinery available today; however, it cannot scale up to the more complex architectures scheduled to appear. Thus, we also provide a heuristic solution to qubit allocation, which is faster than the current solutions already implemented to deal with this problem.},
booktitle = {Proceedings of the 2018 International Symposium on Code Generation and Optimization},
pages = {113–125},
numpages = {13},
keywords = {CNOT, Quantum Computer, Qubit Allocation},
location = {Vienna, Austria},
series = {CGO 2018}
}

repository: thwfhk/lambdaQ

repo_name: thwfhk/lambdaQ

gha_language: Haskell


text:
Automatically generated by Mendeley Desktop 1.19.4
Any changes to this file will be lost if it is regenerated by Mendeley.

BibTeX export options can be customized via Preferences -> BibTeX in Mendeley Desktop

@article{Brown2012a,
author = {Brown, J.B. and Okuno, Yasushi},
doi = {10.1016/j.chembiol.2011.12.012},
file = {:Users/pma/Dropbox/Papers/New Drug Discovery/Systems Biology and Systems Chemistry- New Directions for Drug Discovery.pdf:pdf},
issn = {10745521},
journal = {Chemistry {\&} Biology},
month = {jan},
number = {1},
pages = {23--28},
publisher = {Elsevier Ltd},
title = {{Systems Biology and Systems Chemistry: New Directions for Drug Discovery}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1074552111004649},
volume = {19},
year = {2012}
}
@article{Gerwick2012a,
abstract = {Marine life forms are an important source of structurally diverse and biologically active secondary metabolites, several of which have inspired the development of new classes of therapeutic agents. These success stories have had to overcome difficulties inherent to natural products-derived drugs, such as adequate sourcing of the agent and issues related to structural complexity. Nevertheless, several marine-derived agents are now approved, most as "first-in-class" drugs, with five of seven appearing in the past few years. Additionally, there is a rich pipeline of clinical and preclinical marine compounds to suggest their continued application in human medicine. Understanding of how these agents are biosynthetically assembled has accelerated in recent years, especially through interdisciplinary approaches, and innovative manipulations and re-engineering of some of these gene clusters are yielding novel agents of enhanced pharmaceutical properties compared with the natural product.},
author = {Gerwick, William H and Moore, Bradley S},
doi = {10.1016/j.chembiol.2011.12.014},
issn = {1879-1301},
journal = {Chemistry {\&} biology},
month = {jan},
number = {1},
pages = {85--98},
pmid = {22284357},
publisher = {Elsevier Ltd},
title = {{Lessons from the past and charting the future of marine natural products drug discovery and chemical biology.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/22284357},
volume = {19},
year = {2012}
}
@article{Blunt2009,
abstract = {This review covers the literature published in 2007 for marine natural products, with 948 citations(627 for the period January to December 2007) referring to compounds isolated from marine microorganisms and phytoplankton, green algae, brown algae, red algae, sponges, cnidarians,bryozoans, molluscs, tunicates, echinoderms and true mangrove plants. The emphasis is on new compounds (961 for 2007), together with the relevant biological activities, source organisms and country of origin. Biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included.1 Introduction, 2 Reviews, 3 Marine microorganisms and phytoplankton, 4 Green algae, 5 Brown algae, 6 Red algae, 7 Sponges, 8 Cnidarians, 9 Bryozoans, 10 Molluscs, 11 Tunicates (ascidians),12 Echinoderms, 13 Miscellaneous, 14 Conclusion, 15 References.},
author = {Blunt, John W and Copp, Brent R and Hu, Wan-Ping and Munro, Murray H G and Northcote, Peter T and Prinsep, Mich{\`{e}}le R},
doi = {10.1039/b805113p},
file = {:Users/pma/Dropbox/Papers/Marine Natural Products/Marine natural products2009.pdf:pdf},
issn = {0265-0568},
journal = {Natural product reports},
keywords = {Animals,Biological Products,Biological Products: chemistry,Biological Products: isolation {\&} purification,Bryozoa,Bryozoa: chemistry,Cnidaria,Cnidaria: chemistry,Echinodermata,Echinodermata: chemistry,Eukaryota,Eukaryota: chemistry,Marine Biology,Molecular Structure,Mollusca,Mollusca: chemistry,Phytoplankton,Phytoplankton: chemistry,Porifera,Porifera: chemistry,Urochordata,Urochordata: chemistry},
month = {feb},
number = {2},
pages = {170--244},
pmid = {19177222},
title = {{Marine natural products.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19177222},
volume = {26},
year = {2009}
}

repository: Daniel-Mietchen/dendron

repo_name: Daniel-Mietchen/dendron


text:
require xorg-proto-common.inc

PR = "r1"
PE = "1"

XORG_PN = "kbproto"

SRC_URI[archive.md5sum] = "7f439166a9b2bf81471a33951883019f"
SRC_URI[archive.sha256sum] = "1baa29931313d0c3eb81dffd42662768cc76ce49ce94024d5fe32ef5a4e8603c"