text:
---
---
@article{10.1186/s12943-023-01789-9,
  abbr = {Mol Cancer},
  bibtex_show={true},
  year = {2023},
  title = {{CXCR2 expression during melanoma tumorigenesis controls transcriptional programs that facilitate tumor growth}},
  author = {Yang, J and Bergdorf, K. and Yan, C. and Luo, W. and Chen, S. C. and Ayers, G.D. and Liu, Q. and Liu, X. and Boothby, M. and Weiss, V.L. and Groves, S. M. and Oleskie, A. N. and Zhang, X. and Maeda, D. Y. and Zebala, J. A. and Quaranta, V. and Richmond, A.},
  journal = {Molecular Cancer},
  doi = {10.1186/s12943-023-01789-9},
  url = {https://link.springer.com/article/10.1186/s12943-023-01789-9},
  html = {https://link.springer.com/article/10.1186/s12943-023-01789-9},
  keywords = {},
  month = {6},
}

@article{10.3390/cancers15051477,
  abbr = {Cancers},
  bibtex_show={true},
  year = {2023},
  title = {{Involvement of Epithelial–Mesenchymal Transition Genes in Small Cell Lung Cancer Phenotypic Plasticity}},
  author = {Groves, Sarah M. and Panchy, Nicholas and Tyson, Darren R and Harris, Leonard A and Quaranta, Vito and Hong, Tian},
  journal = {Cancers},
  doi = {10.3390/cancers15051477},
  url = {https://www.mdpi.com/2072-6694/15/5/1477},
  html = {https://www.mdpi.com/2072-6694/15/5/1477},
  keywords = {},
  month = {1},
}

@article{10.1016/j.cels.2022.07.006,
  abbr = {Cell Sys},
  bibtex_show={true},
  year = {2022},
  title = {{Archetype tasks link intratumoral heterogeneity to plasticity and cancer hallmarks in small cell lung cancer}},
  author = {Groves, Sarah M. and Ildefonso, Geena V. and McAtee, Caitlin O. and Ozawa, Patricia M.M. and Ireland, Abbie S. and Stauffer, Philip E. and Wasdin, Perry T. and Huang, Xiaomeng and Qiao, Yi and Lim, Jing Shan and Bader, Jackie and Liu, Qi and Simmons, Alan J. and Lau, Ken S. and Iams, Wade T. and Hardin, Doug P. and Saff, Edward B. and Holmes, William R. and Tyson, Darren R. and Lovly, Christine M. and Rathmell, Jeffrey C. and Marth, Gabor and Sage, Julien and Oliver, Trudy G. and Weaver, Alissa M. and Quaranta, Vito},
  journal = {Cell Systems},
  issn = {2405-4712},
  doi = {10.1016/j.cels.2022.07.006},
  html = {https://www.cell.com/cell-systems/fulltext/S2405-4712(22)00313-1?\_returnURL=https\%3A\%2F\%2Flinkinghub.elsevier.com\%2Fretrieve\%2Fpii\%2FS2405471222003131\%3Fshowall\%3Dtrue},
  url = {https://www.cell.com/cell-systems/fulltext/S2405-4712(22)00313-1?\_returnURL=https\%3A\%2F\%2Flinkinghub.elsevier.com\%2Fretrieve\%2Fpii\%2FS2405471222003131\%3Fshowall\%3Dtrue},
  abstract = {{Small cell lung cancer (SCLC) tumors comprise heterogeneous mixtures of cell states, categorized into neuroendocrine (NE) and non-neuroendocrine (non-NE) transcriptional subtypes. NE to non-NE state transitions, fueled by plasticity, likely underlie adaptability to treatment and dismal survival rates. Here, we apply an archetypal analysis to model plasticity by recasting SCLC phenotypic heterogeneity through multi-task evolutionary theory. Cell line and tumor transcriptomics data fit well in a five-dimensional convex polytope whose vertices optimize tasks reminiscent of pulmonary NE cells, the SCLC normal counterparts. These tasks, supported by knowledge and experimental data, include proliferation, slithering, metabolism, secretion, and injury repair, reflecting cancer hallmarks. SCLC subtypes, either at the population or single-cell level, can be positioned in archetypal space by bulk or single-cell transcriptomics, respectively, and characterized as task specialists or multi-task generalists by the distance from archetype vertex signatures. In the archetype space, modeling single-cell plasticity as a Markovian process along an underlying state manifold indicates that task trade-offs, in response to microenvironmental perturbations or treatment, may drive cell plasticity. Stifling phenotypic transitions and plasticity may provide new targets for much-needed translational advances in SCLC. A record of this paper’s Transparent Peer Review process is included in the supplemental information.}},
  keywords = {},
  selected={true},
  month = {8},

}

@article{10.1016/j.jtho.2021.03.011,
  abbr = {J Thor Onc},
  bibtex_show={true},
  year = {2021},
  title = {{Beyond Programmed Death-Ligand 1: B7-H6 Emerges as a Potential Immunotherapy Target in SCLC}},
  author = {Thomas, Portia L. and Groves, Sarah M. and Zhang, Yun-Kai and Li, Jia and Gonzalez-Ericsson, Paula and Sivagnanam, Shamilene and Betts, Courtney B. and Chen, Hua-Chang and Liu, Qi and Lowe, Cindy and Chen, Heidi and Boyd, Kelli L. and Kopparapu, Prasad R. and Yan, Yingjun and Coussens, Lisa M. and Quaranta, Vito and Tyson, Darren R. and Iams, Wade and Lovly, Christine M.},
  journal = {Journal of Thoracic Oncology},
  issn = {1556-0864},
  doi = {10.1016/j.jtho.2021.03.011},
  pmid = {33839362},
  pmcid = {PMC8222171},
  html = {https://www.sciencedirect.com/science/article/pii/S1556086421020669},
  url = {https://www.sciencedirect.com/science/article/pii/S1556086421020669},
  abstract = {{Introduction The programmed death-ligand 1 (PD-L1) immune checkpoint inhibitors, atezolizumab and durvalumab, have received regulatory approval for the first-line treatment of patients with extensive-stage SCLC. Nevertheless, when used in combination with platinum-based chemotherapy, these PD-L1 inhibitors only improve overall survival by 2 to 3 months. This may be due to the observation that less than 20\% of SCLC tumors express PD-L1 at greater than 1\%. Evaluating the composition and abundance of checkpoint molecules in SCLC may identify molecules beyond PD-L1 that are amenable to therapeutic targeting. Methods We analyzed RNA-sequencing data from SCLC cell lines (n = 108) and primary tumor specimens (n = 81) for expression of 39 functionally validated inhibitory checkpoint ligands. Furthermore, we generated tissue microarrays containing SCLC cell lines and patient with SCLC specimens to confirm expression of these molecules by immunohistochemistry. We annotated patient outcomes data, including treatment response and overall survival. Results The checkpoint protein B7-H6 (NCR3LG1) exhibited increased protein expression relative to PD-L1 in cell lines and tumors (p < 0.05). Higher B7-H6 protein expression correlated with longer progression-free survival (p = 0.0368) and increased total immune infiltrates (CD45+) in patients. Furthermore, increased B7-H6 gene expression in SCLC tumors correlated with a decreased activated natural killer cell gene signature, suggesting a complex interplay between B7-H6 expression and immune signature in SCLC. Conclusions We investigated 39 inhibitory checkpoint molecules in SCLC and found that B7-H6 is highly expressed and associated with progression-free survival. In addition, 26 of 39 immune checkpoint proteins in SCLC tumors were more abundantly expressed than PD-L1, indicating an urgent need to investigate additional checkpoint targets for therapy in addition to PD-L1.}},
  pages = {1211--1223},
  number = {7},
  volume = {16},
  keywords = {},
  month = {7},
}

@article{10.1016/j.ccell.2020.12.014,
  abbr = {Cancer Cell},
  bibtex_show={true},
  year = {2021},
  title = {{Patterns of transcription factor programs and immune pathway activation define four major subtypes of SCLC with distinct therapeutic vulnerabilities}},
  author = {Gay, Carl M. and Stewart, C. Allison and Park, Elizabeth M. and Diao, Lixia and Groves, Sarah M. and Heeke, Simon and Nabet, Barzin Y. and Fujimoto, Junya and Solis, Luisa M. and Lu, Wei and Xi, Yuanxin and Cardnell, Robert J. and Wang, Qi and Fabbri, Giulia and Cargill, Kasey R. and Vokes, Natalie I. and Ramkumar, Kavya and Zhang, Bingnan and Corte, Carminia M. Della and Robson, Paul and Swisher, Stephen G. and Roth, Jack A. and Glisson, Bonnie S. and Shames, David S. and Wistuba, Ignacio I. and Wang, Jing and Quaranta, Vito and Minna, John and Heymach, John V. and Byers, Lauren Averett},
  journal = {Cancer Cell},
  issn = {1535-6108},
  doi = {10.1016/j.ccell.2020.12.014},
  pmid = {33482121},
  html = {https://www.cell.com/cancer-cell/fulltext/S1535-6108(20)30662-0},
  url = {https://www.cell.com/cancer-cell/fulltext/S1535-6108(20)30662-0},
  abstract = {{Despite molecular and clinical heterogeneity, small cell lung cancer (SCLC) is treated as a single entity with predictably poor results. Using tumor expression data and non-negative matrix factorization, we identify four SCLC subtypes defined largely by differential expression of transcription factors ASCL1, NEUROD1, and POU2F3 or low expression of all three transcription factor signatures accompanied by an Inflamed gene signature (SCLC-A, N, P, and I, respectively). SCLC-I experiences the greatest benefit from the addition of immunotherapy to chemotherapy, while the other subtypes each have distinct vulnerabilities, including to inhibitors of PARP, Aurora kinases, or BCL-2. Cisplatin treatment of SCLC-A patient-derived xenografts induces intratumoral shifts toward SCLC-I, supporting subtype switching as a mechanism of acquired platinum resistance. We propose that matching baseline tumor subtype to therapy, as well as manipulating subtype switching on therapy, may enhance depth and duration of response for SCLC patients.}},
  keywords = {},
  month = {1},
}

@article{10.1101/gad.348295.121,
  abbr = {Genes & Dev},
  bibtex_show={true},
  year = {2021},
  title = {{ASCL1 represses a SOX9+ neural crest stem-like state in small cell lung cancer}},
  author = {Olsen, Rachelle R. and Ireland, Abbie S. and Kastner, David W. and Groves, Sarah M. and Spainhower, Kyle B. and Pozo, Karine and Kelenis, Demetra P. and Whitney, Christopher P. and Guthrie, Matthew R. and Wait, Sarah J. and Soltero, Danny and Witt, Benjamin L. and Quaranta, Vito and Johnson, Jane E. and Oliver, Trudy G.},
  journal = {Genes \& Development},
  issn = {0890-9369},
  doi = {10.1101/gad.348295.121},
  pmid = {34016693},
  html = {http://genesdev.cshlp.org/content/35/11-12/847},
  url = {http://genesdev.cshlp.org/content/35/11-12/847},
  abstract = {{ASCL1 is a neuroendocrine lineage-specific oncogenic driver of small cell lung cancer (SCLC), highly expressed in a significant fraction of tumors. However, ∼25\% of human SCLC are ASCL1-low and associated with low neuroendocrine fate and high MYC expression. Using genetically engineered mouse models (GEMMs), we show that alterations in Rb1/Trp53/Myc in the mouse lung induce an ASCL1+ state of SCLC in multiple cells of origin. Genetic depletion of ASCL1 in MYC-driven SCLC dramatically inhibits tumor initiation and progression to the NEUROD1+ subtype of SCLC. Surprisingly, ASCL1 loss promotes a SOX9+ mesenchymal/neural crest stem-like state and the emergence of osteosarcoma and chondroid tumors, whose propensity is impacted by cell of origin. ASCL1 is critical for expression of key lineage-related transcription factors NKX2-1, FOXA2, and INSM1 and represses genes involved in the Hippo/Wnt/Notch developmental pathways in vivo. Importantly, ASCL1 represses a SOX9/RUNX1/RUNX2 program in vivo and SOX9 expression in human SCLC cells, suggesting a conserved function for ASCL1. Together, in a MYC-driven SCLC model, ASCL1 promotes neuroendocrine fate and represses the emergence of a SOX9+ nonendodermal stem-like fate that resembles neural crest.}},
  keywords = {},
  month = {5},
}

@article{10.1371/journal.pcbi.1007343,
  abbr = {PLOS Comp Bio},
  bibtex_show={true},
  year = {2019},
  title = {{Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers}},
  author = {Wooten, David J. and Groves, Sarah M. and Tyson, Darren R. and Liu, Qi and Lim, Jing S. and Albert, Réka and Lopez, Carlos F. and Sage, Julien and Quaranta, Vito},
  journal = {PLOS Computational Biology},
  issn = {1553-734X},
  doi = {10.1371/journal.pcbi.1007343},
  pmid = {31671086},
  html = {https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007343},
  url = {https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007343},
  abstract = {{Adopting a systems approach, we devise a general workflow to define actionable subtypes in human cancers. Applied to small cell lung cancer (SCLC), the workflow identifies four subtypes based on global gene expression patterns and ontologies. Three correspond to known subtypes (SCLC-A, SCLC-N, and SCLC-Y), while the fourth is a previously undescribed ASCL1+ neuroendocrine variant (NEv2, or SCLC-A2). Tumor deconvolution with subtype gene signatures shows that all of the subtypes are detectable in varying proportions in human and mouse tumors. To understand how multiple stable subtypes can arise within a tumor, we infer a network of transcription factors and develop BooleaBayes, a minimally-constrained Boolean rule-fitting approach. In silico perturbations of the network identify master regulators and destabilizers of its attractors. Specific to NEv2, BooleaBayes predicts ELF3 and NR0B1 as master regulators of the subtype, and TCF3 as a master destabilizer. Since the four subtypes exhibit differential drug sensitivity, with NEv2 consistently least sensitive, these findings may lead to actionable therapeutic strategies that consider SCLC intratumoral heterogeneity. Our systems-level approach should generalize to other cancer types.}},
  pages = {e1007343},
  number = {10},
  volume = {15},
  keywords = {},
  selected={true},
  month = {10},
}

@article{10.1103/physrevc.93.065207,
  abbr = {Phys Rev C},
  bibtex_show={true},
  year = {2016},
  title = {{Consistency of electron scattering data with a small proton radius}},
  author = {Griffioen, Keith and Carlson, Carl and Maddox, Sarah},
  journal = {Physical Review C},
  issn = {2469-9985},
  doi = {10.1103/physrevc.93.065207},
  html = {https://journals.aps.org/prc/abstract/10.1103/PhysRevC.93.065207},
  url = {https://journals.aps.org/prc/abstract/10.1103/PhysRevC.93.065207},
  abstract = {{We determine the charge radius of the proton by analyzing the published low momentum transfer electron-proton scattering data from Mainz. We note that polynomial expansions of the form factor converge for momentum transfers squared below 4mπ2, where mπ is the pion mass. Expansions with enough terms to fit the data, but few enough not to overfit, yield proton radii smaller than the CODATA or Mainz values and in accord with the muonic atom results. We also comment on analyses using a wider range of data, and overall obtain a proton radius RE=0.840(16) fm.}},
  pages = {065207},
  number = {6},
  volume = {93},
  keywords = {},
  month = {6}
}

@article{PhysRev.47.777,
  abbr={PhysRev},
  title={Can Quantum-Mechanical Description of Physical Reality Be Considered Complete?},
  author={Einstein, A. and Podolsky, B. and Rosen, N.},
  abstract={In a complete theory there is an element corresponding to each element of reality. A sufficient condition for the reality of a physical quantity is the possibility of predicting it with certainty, without disturbing the system. In quantum mechanics in the case of two physical quantities described by non-commuting operators, the knowledge of one precludes the knowledge of the other. Then either (1) the description of reality given by the wave function in quantum mechanics is not complete or (2) these two quantities cannot have simultaneous reality. Consideration of the problem of making predictions concerning a system on the basis of measurements made on another system that had previously interacted with it leads to the result that if (1) is false then (2) is also false. One is thus led to conclude that the description of reality as given by a wave function is not complete.},
  journal={Phys. Rev.,},
  volume={47},
  issue={10},
  pages={777--780},
  numpages={0},
  year={1935},
  month={May},
  publisher=aps,
  doi={10.1103/PhysRev.47.777},
  url={http://link.aps.org/doi/10.1103/PhysRev.47.777},
  html={https://journals.aps.org/pr/abstract/10.1103/PhysRev.47.777},
  pdf={example_pdf.pdf},
  preview={wave-mechanics.gif}

}


text:
@InProceedings{Bubeck13,
  pdf = {http://jmlr.org/proceedings/papers/v30/Bubeck13.pdf},
  title = {Bounded regret in stochastic multi-armed bandits},
  author = {S\'ebastien Bubeck and Vianney Perchet and Philippe Rigollet},
  pages = {122-134},
  abstract = {We study the stochastic multi-armed bandit problem when one knows the value $\mu^{(\star)}$ of an optimal arm, as a well as a positive lower bound on the smallest positive gap $\Delta$. We propose a new randomized policy that attains a regret uniformly bounded over time in this setting. We also prove several lower bounds, which show in particular that bounded regret is not possible if one only knows $\Delta$, and bounded regret of order $1/\Delta$ is not possible if one only knows $\mu^{(\star)}$.},
}

license: MIT

repository: mreid/papersite

license_type: permissive

repo_name: mreid/papersite

branch_name: refs/heads/master

gha_license_id: MIT

gha_language: TeX

extension: bib


text:
@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 100;
    src: local('Noto Sans Thin'), local('NotoSans-Thin'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Thin-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Thin-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-Thin-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-Thin-Hestia.otf) format('opentype');
}

@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 300;
    src: local('Noto Sans Light'), local('NotoSans-Light'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Light-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Light-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-Light-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-Light-Hestia.otf) format('opentype');
}

@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 350;
    src: local('Noto Sans DemiLight'), local('NotoSans-DemiLight'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-DemiLight-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-DemiLight-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-DemiLight-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-DemiLight-Hestia.otf) format('opentype');
}

@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 400;
    src: local('Noto Sans Regular'), local('NotoSans-Regular'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Regular-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Regular-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-Regular-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-Regular-Hestia.otf) format('opentype');
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@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 500;
    src: local('Noto Sans Medium'), local('NotoSans-Medium'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Medium-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Medium-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-Medium-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-Medium-Hestia.otf) format('opentype');
}

@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 700;
    src: local('Noto Sans Bold'), local('NotoSans-Bold'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Bold-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Bold-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-Bold-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-Bold-Hestia.otf) format('opentype');
}

@font-face {
    font-family: 'Noto Sans Korean';
    font-style: normal;
    font-weight: 900;
    src: local('Noto Sans Black'), local('NotoSans-Black'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Black-Hestia.eot),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/eot/NotoSansKR-Black-Hestia.eot?#iefix) format('embedded-opentype'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/woff/NotoSansKR-Black-Hestia.woff) format('woff'),
    url(https://cdn.jsdelivr.net/gh/theeluwin/NotoSansKR-Hestia@master/fonts/otf/NotoSansKR-Black-Hestia.otf) format('opentype');
}

repository: HamSungJun/React-Board

repo_name: HamSungJun/React-Board

gha_language: JavaScript

extension: css


text:
server {
    listen 80;
    server_name blok.ugent.be;

    if ($request_method = GET) {
        return 301 https://$server_name$request_uri;
    }

    return 308 https://$server_name$request_uri;

    include snippets/letsencrypt.conf;
}

server {
    listen 443 ssl http2;
    server_name blok.ugent.be;
    root /home/blok/public/current/;
    index index.html;

    ####################
    # SSL OPTIONS
    ####################
    include snippets/ssl_options_preload.conf;
    ssl_certificate     /root/.acme.sh/blok.ugent.be/fullchain.cer;
    ssl_certificate_key /root/.acme.sh/blok.ugent.be/blok.ugent.be.key;
    include snippets/letsencrypt.conf;

    ####################
    # DEFAULT LOG PATHS
    ####################

    access_log /home/blok/log/access.log;
    error_log  /home/blok/log/error.log notice;

    rewrite_log on;
}

repository: ZeusWPI/ansible-config

repo_name: ZeusWPI/ansible-config

gha_language: Berry

extension: be


text:
@misc{Author = {Maza, Mauricio and Melendez, Mario and Cremer, Miriam and Masch, Rachel and Alonzo, Todd and Castle, Philip and Alfaro, K and Soler, Montserrat and Conzuelo, Gabriel and Gage, Julia},
	Date-Modified = {2020-04-29 23:53:16 -0400},
	Publisher = {American Society of Clinical Oncology},
	Title = {High Acceptability of Human Papillomavirus Self-Sampling Among Nonattenders of a Public Cervical Cancer Screening Program in El Salvador},
	Year = {2018}}

repository: gconzuelo/myWeb

repo_name: gconzuelo/myWeb


text:
@misc{bloggers,
author={{R}-bloggers},
title={Exploratory Data Analysis: 2 Ways of Plotting Empirical Cumulative Distribution Functions in R},
 howpublished = {``http://www.r-bloggers.com/exploratory-data-analysis-2-ways-of-plotting-empirical-cumulative-distribution-functions-in-r"},
 year =  2015
     }

@misc{Locally,
       author={Locally Optimal},
       title={{E}xecutable {P}ython {S}cripts via {E}ntry {P}oints},
       month={JAN 20TH},
       howpublished ={``http://locallyoptimal.com/blog/2013/01/20/elegant-n-gram-generation-in-python/"},
      year =  2015
     }
@misc{anwala,
       author={anwala},
       title={timelapse.py},
       howpublished ={``https://github.com/anwala/wdill/blob/master/timelapse.py"},
      year =  2015
     }


text:
require recipes-graphics/mesa/mesa.inc

SRC_URI = "git://gitlab.freedesktop.org/mesa/mesa.git;protocol=https;branch=main \
           file://0001-meson.build-check-for-all-linux-host_os-combinations.patch \
           file://0002-meson.build-make-TLS-ELF-optional.patch \
           file://0003-Allow-enable-DRI-without-DRI-drivers.patch \
           file://0004-Revert-mesa-Enable-asm-unconditionally-now-that-gen_.patch \
           file://0001-meson-misdetects-64bit-atomics-on-mips-clang.patch \
           "
LIC_FILES_CHKSUM = "file://docs/license.rst;md5=17a4ea65de7a9ab42437f3131e616a7f"

SRCREV = "${@oe.utils.conditional("MESA_DEV", "1", "${AUTOREV}", "26677008b9a7c0ef82f2a7f4b479d3cb06097c66", d)}"
DEFAULT_PREFERENCE = "${@oe.utils.conditional("MESA_DEV", "1", "1", "-1", d)}"

PLATFORMS_remove = "drm surfaceless"
PACKAGECONFIG[osmesa] = "-Dosmesa=true,-Dosmesa=false"
DRIDRIVERS_remove = "swrast"
DRIDRIVERS_class-native = "auto"
DRIDRIVERS_class-nativesdk = "auto"

S = "${WORKDIR}/git"
PV = "2x.x-dev+git${SRCPV}"
ERROR_QA_remove = "version-going-backwards"

# Add package to install require files to run tests for mesa
PACKAGES =+ "mesa-ci"
FILES_${PN}-ci = "${bindir}/deqp-runner.sh ${datadir}/mesa/deqp-*"
do_install_append () {
    install -d ${D}/${datadir}/mesa

    install -m 0644 ${S}/.gitlab-ci/deqp-default-skips.txt ${D}/${datadir}/mesa/
    for f in ${S}/src/freedreno/ci/deqp-freedreno-*; do
        install -m 0644 $f ${D}/${datadir}/mesa/
    done

    install -d ${D}/${bindir}
    install -m 0755 ${S}/.gitlab-ci/deqp-runner.sh ${D}/${bindir}/
}

repository: olivierschonken/meta-qcom

repo_name: olivierschonken/meta-qcom

extension: bb


text:
@INPROCEEDINGS{Vanderfeesten07WeightedCoupling,
author = {Vanderfeesten, Irene and Cardoso, Jorge and Reijers, Hajo},
title = {A weighted coupling metric for business process models},
booktitle = {The 19th International Conference on Advanced Information Systems	Engineering (CAiSE 2007), CAiSE Forum},
year = {2007},
address = {Trondheim, Norway},
note = {workshop},
date = {11-15 June 2007},
owner = {Jorge Cardoso},
refid = {106},
timestamp = {2010.08.26},
webpdf = {/Papers/WP-2007-039-CAISE-FORUM-A-weighted-coupling-metric.pdf}}


text:
@InProceedings{xu09a,
  title = {Tree-Based Inference for Dirichlet Process Mixtures},
  author = {Yang Xu and Katherine Heller and Zoubin Ghahramani},
  pages = {623--630},
  abstract = {The Dirichlet process mixture (DPM) is a widely used model for clustering and for general nonparametric Bayesian density estimation. Unfortunately, like in many statistical models, exact inference in a DPM is intractable, and  approximate methods are needed to perform efficient inference. While most attention in the literature has been placed on Markov chain Monte Carlo (MCMC), variational Bayesian (VB) and collapsed variational methods, Heller and Ghahramani (2005) recently introduced a novel class of approximation for DPMs based on Bayesian hierarchical clustering (BHC). These tree-based combinatorial approximations efficiently sum over exponentially many ways of partitioning the data and offer a novel lower bound on the marginal likelihood of the DPM. In this paper we make the following contributions: (1) We show empirically that the BHC lower bounds are substantially tighter than the bounds given by VB and by collapsed variational methods on synthetic and real datasets. (2) We also show that BHC offers a more accurate predictive performance on these datasets. (3) We further improve the tree-based lower bounds with an algorithm that efficiently sums contributions from alternative trees. (4) We present a fast approximate method for BHC. Our results suggest that our combinatorial approximate inference methods and lower bounds may be useful not only in DPMs but in other models as well.},
  pdf = {http://jmlr.org/proceedings/papers/v5/xu09a/xu09a.pdf},
}


text:
@inproceedings{2022-dzb,
 abstract = {The suffix array is a fundamental data structure to support string analysis efficiently. It took about 26 years for the sequential suffix array construction algorithm to achieve O(n) time complexity and inplace sorting. In this paper, we develop the DLP I (D Limited Parallel Induce) algorithm, the first O( n/p ) time parallel suffix array construction algorithm. The basic idea of DLPI includes two aspects: dividing the O(n) size problem into p reduced sub-problems with size O( n/p ) so we can handle them on p processors in parallel; developing an efficient parallel induce sorting method to achieve correct order for all the reduced sub-problems. The complete algorithm description is given to show the implementation method of the proposed idea. The time and space complexity analysis and proof are also given to show the correctness and efficiency of the proposed algorithm. The proposed DLP I algorithm can handle large strings with scalable performance.},
 address = {Gdansk, Poland},
 author = {Zhihui Du and Sen Zhang and David A. Bader},
 booktitle = {Parallel Processing and Applied Mathematics - 14th International Conference, PPAM 2022, Gdansk, Poland, September 11-14, 2022},
 groups = {Edited},
 title = {Parallel Suffix Sorting for Large String Analytics},
 year = {2022},
 doi = {10.1007/978-3-031-30442-2_6},
 note = {In R. Wyrzykowski et al. (Eds.): PPAM 2022, LNCS 13826, pp. 71–82, 2023.}
}

gha_language: Shell


text:
@InProceedings{Steinke15,
  author = {Steinke, Thomas and Ullman, Jonathan},
  title = {Interactive Fingerprinting Codes and the Hardness of Preventing False Discovery},
  pages = {1588-1628},
  abstract = {We show an essentially tight bound on the number of adaptively chosen statistical queries that a computationally efficient algorithm can answer accurately given $n$ samples from an unknown distribution.  A statistical query asks for the expectation of a predicate over the underlying distribution, and an answer to a statistical query is accurate if it is ``close'' to the correct expectation over the distribution.  This question was recently studied by Dwork et al. (2015), who showed how to answer $\tilde{\Omega}(n^2)$ queries efficiently, and also by Hardt and Ulman (2014), who showed that answering $\tilde{O}(n^3)$ queries is hard.  We close the gap between the two bounds and show that, under a standard hardness assumption, there is no computationally efficient algorithm that, given $n$ samples from an unknown distribution, can give valid answers to $O(n^2)$ adaptively chosen statistical queries.  An implication of our results is that computationally efficient algorithms for answering arbitrary, adaptively chosen statistical queries may as well be \emph{differentially private}.

We obtain our results using a new connection between the problem of answering adaptively chosen statistical queries and a combinatorial object called an \emph{interactive fingerprinting code} Fiat and Tassa (2001).  In order to optimize our hardness result, we give a new Fourier-analytic approach to analyzing fingerprinting codes that is simpler, more flexible, and yields better parameters than previous constructions.},
}


text:
LICENSE = "GPLv3"
LIC_FILES_CHKSUM = "file://COPYING;md5=d32239bcb673463ab874e80d47fae504"

SRC_URI = "http://sigrok.org/download/source/sigrok-cli/sigrok-cli-${PV}.tar.gz"
SRC_URI[md5sum] = "f6786bc4d2455b8b7d225f4909946549"
SRC_URI[sha256sum] = "73a30501525b13c09624ae00d37041cdaa50238d89c6febf169fc784affe723c"

DEPENDS = "glib-2.0 libsigrok libsigrokdecode"

inherit pkgconfig autotools

EXTRA_OECONF = ""

repository: baylibre-acme/meta-baylibre

repo_name: baylibre-acme/meta-baylibre

branch_name: refs/heads/krogoth

gha_language: BitBake


text:
require gnuradio-libusb-compat.inc

PR = "${INC_PR}.1"

SRC_URI = "ftp://ftp.gnu.org/gnu/gnuradio/gnuradio-${PV}.tar.gz \
	   file://acinclude.m4 \
      ${SOURCEFORGE_MIRROR}/libusb/libusb-0.1.12.tar.gz \
"

repository: demsey/openembedded

repo_name: demsey/openembedded

branch_name: HEAD


text:
@book{,
  author = {Smith, Bob and Doe, Jan and Brown, Judy and Martin, Steve and Clark, Joe},
  publisher = {Test Publisher},
  title = {Testing Book Title},
  volume = {1},
  year = {2015}
}

repository: JabRef/jabref

repo_name: JabRef/jabref

branch_name: refs/heads/main

gha_language: Java


text:
@article{Liang2015a,
author = {Liang, M and Voller, V R and Paola, C},
doi = {10.5194/esurf-3-67-2015},
file = {:home/jayh/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Liang, Voller, Paola - 2015 - A reduced-complexity model for river delta formation – Part 1 Modeling deltas with channel dynamics.pdf:pdf},
issn = {2196632X},
journal = {Earth Surface Dynamics},
mendeley-groups = {NASA App 2019,MS Thesis,CFD Project,GeometricPaper,Proposal},
number = {1},
pages = {67--86},
title = {{A reduced-complexity model for river delta formation - Part 1: Modeling deltas with channel dynamics}},
volume = {3},
year = {2015}
}
@article{Liang2015,
author = {Liang, M and Geleynse, N and Edmonds, D A and Passalacqua, P},
doi = {10.5194/esurf-3-87-2015},
file = {:home/jayh/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Liang et al. - 2015 - A reduced-complexity model for river delta formation – Part 2 Assessment of the flow routing scheme.pdf:pdf},
issn = {2196632X},
journal = {Earth Surface Dynamics},
mendeley-groups = {Cited in Delta Proposal,NASA App 2019,MS Thesis,CFD Project,GeometricPaper,Proposal},
number = {1},
pages = {87--104},
title = {{A reduced-complexity model for river delta formation - Part 2: Assessment of the flow routing scheme}},
volume = {3},
year = {2015}
}
@article{Liang2016a,
author = {Liang, Man and {Van Dyk}, Corey and Passalacqua, Paola},
doi = {10.1002/2015JF003653},
issn = {21699003},
journal = {Journal of Geophysical Research: Earth Surface},
mendeley-groups = {MS Thesis,GeometricPaper,NASA App 2019},
month = {feb},
number = {2},
pages = {465--496},
title = {{Quantifying the patterns and dynamics of river deltas under conditions of steady forcing and relative sea level rise}},
volume = {121},
year = {2016}
}
@article{Liang2016,
author = {Liang, Man and Kim, Wonsuck and Passalacqua, Paola},
doi = {10.1002/2016GL070519},
issn = {19448007},
journal = {Geophysical Research Letters},
keywords = {numerical modeling,river deltas,rule-based model,subsidence},
mendeley-groups = {MS Thesis,GeometricPaper,Cited in Delta Proposal},
month = {oct},
number = {19},
pages = {10,266--10,276},
title = {{How much subsidence is enough to change the morphology of river deltas?}},
volume = {43},
year = {2016}
}
@article{Lauzon2018,
author = {Lauzon, Rebecca and Murray, A. Brad},
doi = {10.1029/2018GL079405},
file = {:home/jayh/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Lauzon, Murray - 2018 - Comparing the Cohesive Effects of Mud and Vegetation on Delta Evolution(2).pdf:pdf},
issn = {19448007},
journal = {Geophysical Research Letters},
keywords = {cohesive sediment,river delta,vegetation},
month = {oct},
number = {19},
pages = {10,437--10,445},
publisher = {John Wiley & Sons, Ltd},
title = {{Comparing the Cohesive Effects of Mud and Vegetation on Delta Evolution}},
volume = {45},
year = {2018}
}
@article{Lauzon2019,
author = {Lauzon, Rebecca and Piliouras, Anastasia and Rowland, Joel C.},
doi = {10.1029/2019GL082792},
issn = {19448007},
journal = {Geophysical Research Letters},
keywords = {Arctic,delta,ice,modeling,permafrost},
mendeley-groups = {Proposal,GeometricPaper},
month = {jun},
number = {12},
pages = {6574--6582},
publisher = {Blackwell Publishing Ltd},
title = {{Ice and Permafrost Effects on Delta Morphology and Channel Dynamics}},
volume = {46},
year = {2019}
}
@article{Piliouras2021,
author = {Piliouras, A. and Lauzon, R. and Rowland, J. C.},
doi = {10.1029/2020jf005706},
issn = {2169-9003},
journal = {Journal of Geophysical Research: Earth Surface},
keywords = {arctic,channel dynamics,delta,ice,morphodynamics,permafrost},
mendeley-groups = {GeometricPaper},
month = {apr},
number = {4},
pages = {e2020JF005706},
publisher = {American Geophysical Union (AGU)},
title = {{Unraveling the Combined Effects of Ice and Permafrost on Arctic Delta Morphodynamics}},
volume = {126},
year = {2021}
}
@manual{MATLAB:R2019b_u4,
  address = {Natick, Massachusetts},
  organization = {The Mathworks, Inc.},
  title = {{MATLAB version 9.7.0.1296695 (R2019b) Update 4}},
  year = {2019},
}
@misc{PythonSoftwareFoundation2016,
author = {{Python Software Foundation}},
title = {{Welcome to Python.org}},
year = {2016}
}
@article{Shaw2008,
author = {Shaw, John B. and Wolinsky, Matthew A. and Paola, Chris and Voller, Vaughan R.},
doi = {10.1029/2008GL033963},
issn = {00948276},
journal = {Geophysical Research Letters},
mendeley-groups = {GeometricPaper},
month = {jun},
number = {12},
pages = {n/a--n/a},
title = {{An image-based method for shoreline mapping on complex coasts}},
volume = {35},
year = {2008}
}
@article{scikit-image,
 title = {scikit-image: image processing in {P}ython},
 author = {van der Walt, {S}t\'efan and {S}ch\"onberger, {J}ohannes {L}. and
           {Nunez-Iglesias}, {J}uan and {B}oulogne, {F}ran\c{c}ois and {W}arner,
           {J}oshua {D}. and {Y}ager, {N}eil and {G}ouillart, {E}mmanuelle and
           {Y}u, {T}ony and the scikit-image contributors},
 year = {2014},
 month = {6},
 keywords = {Image processing, Reproducible research, Education,
             Visualization, Open source, Python, Scientific programming},
 volume = {2},
 pages = {e453},
 journal = {PeerJ},
 issn = {2167-8359},
 doi = {10.7717/peerj.453}
}
@article{zhang1984fast,
  title={A fast parallel algorithm for thinning digital patterns},
  author={Zhang, TY and Suen, Ching Y.},
  journal={Communications of the ACM},
  volume={27},
  number={3},
  pages={236--239},
  year={1984},
  publisher={ACM New York, NY, USA}
}
@phdthesis{roberts1963machine,
  title={Machine perception of three-dimensional solids},
  author={Roberts, Lawrence G},
  year={1963},
  school={Massachusetts Institute of Technology}
}
@article{Wickert2013,
annote = {doi: 10.1029/2012JF002386},
author = {Wickert, Andrew D and Martin, John M and Tal, Michal and Kim, Wonsuck and Sheets, Ben and Paola, Chris},
doi = {10.1029/2012JF002386},
issn = {21699011},
journal = {Journal of Geophysical Research: Earth Surface},
keywords = {alluvial rivers,avulsion,channel mobility,data analysis,experiment,sediment flux},
mendeley-groups = {MS Thesis},
month = {apr},
number = {2},
pages = {396--412},
publisher = {John Wiley & Sons, Ltd},
title = {{River channel lateral mobility: Metrics, time scales, and controls}},
volume = {118},
year = {2013}
}
@article{Cazanacli2002,
author = {Cazanacli, Dan and Paola, Chris and Parker, Gary},
doi = {10.1061/(ASCE)0733-9429(2002)128:3(322)},
issn = {0733-9429},
journal = {Journal of Hydraulic Engineering},
mendeley-groups = {MS Thesis},
month = {mar},
number = {3},
pages = {322--330},
title = {{Experimental Steep, Braided Flow: Application to Flooding Risk on Fans}},
volume = {128},
year = {2002}
}
@article{wilcoxon1945,
 ISSN = {00994987},
 URL = {http://www.jstor.org/stable/3001968},
 author = {Frank Wilcoxon},
 journal = {Biometrics Bulletin},
 number = {6},
 pages = {80--83},
 publisher = {[International Biometric Society, Wiley]},
 title = {Individual Comparisons by Ranking Methods},
 volume = {1},
 year = {1945}
}
@misc{Pearson1905,
author = {Pearson, Karl},
booktitle = {Nature},
doi = {10.1038/072294b0},
issn = {00280836},
keywords = {Humanities and Social Sciences,Science,multidisciplinary},
number = {1865},
pages = {294},
publisher = {Nature Publishing Group},
title = {{The problem of the random walk}},
volume = {72},
year = {1905}
}
@article{Moodie2021,
author = {Moodie, Andrew J and Hariharan, Jayaram and Barefoot, Eric and Passalacqua, Paola},
doi = {10.21105/joss.03398},
journal = {Journal of Open Source Software},
mendeley-groups = {Proposal},
number = {64},
pages = {3398},
publisher = {The Open Journal},
title = {{*pyDeltaRCM*: a flexible numerical delta model}},
volume = {6},
year = {2021}
}

@article{Geleynse2012,
author = {Geleynse, N. and Voller, V. R. and Paola, C. and Ganti, V.},
doi = {10.1029/2012GL052845},
issn = {00948276},
journal = {Geophysical Research Letters},
mendeley-groups = {GeometricPaper,Cited in Delta Proposal,Proposal},
month = {sep},
number = {17},
pages = {n/a--n/a},
title = {{Characterization of river delta shorelines}},
volume = {39},
year = {2012}
}
@article{Baar2019,
author = {Baar, A. W. and {Boechat Albernaz}, M. and van Dijk, W. M. and Kleinhans, M. G.},
doi = {10.1038/s41467-019-12753-x},
issn = {20411723},
journal = {Nature Communications},
month = {dec},
number = {1},
pages = {4903},
pmid = {31653869},
publisher = {NLM (Medline)},
title = {{Critical dependence of morphodynamic models of fluvial and tidal systems on empirical downslope sediment transport}},
volume = {10},
year = {2019}
}
@article{Garcia2008,
address = {Reston, VA},
author = {Garcia, Marcelo},
doi = {10.1061/9780784408148},
editor = {Garcia, Marcelo},
isbn = {978-0-7844-0814-8},
keywords = {Computer models,Geomorphology,Ice,Laws,Measurement,Restoration,River bank erosion,Scour,Sediment,Sediment transport,Watersheds},
month = {may},
publisher = {American Society of Civil Engineers},
title = {{Sedimentation Engineering}},
year = {2008}
}
@inproceedings{meyer1948formulas,
  title={Formulas for bed-load transport},
  author={Meyer-Peter, Eugen and M{\"u}ller, R},
  booktitle={IAHSR 2nd meeting, Stockholm, appendix 2},
  year={1948},
  organization={IAHR}
}

repository: elbeejay/pyDeltaRCMAnthology

repo_name: elbeejay/pyDeltaRCMAnthology


text:
@article{De Gregorio-2019-A,
    title = "A Novel Data Fusion Technique for Snow Cover Retrieval",
    author = "De Gregorio, Ludovica  and
      Callegari, Mattia  and
      Marin, Carlo  and
      Zebisch, Marc  and
      Bruzzone, Lorenzo  and
      Demir, Begum  and
      Strasser, Ulrich  and
      Marke, Thomas  and
      Gunther, Daniel  and
      Nadalet, Rudi  and
      Notarnicola, Claudia",
    journal = "IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, Volume 12, Issue 8",
    volume = "12",
    number = "8",
    year = "2019",
    publisher = "Institute of Electrical and Electronics Engineers (IEEE)",
    url = "https://aclanthology.org/G19-6001",
    doi = "10.1109/jstars.2019.2920676",
    pages = "2862--2877",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

gha_language: Python


text:
@misc{noauthor_ajppja_nodate,
	title = {{AJP}/{PJA} 02/2013},
	url = {https://www.dike.ch/AJP-2-2013},
	abstract = {AJP/PJA 02/2013 - Klaus A.},
	language = {de},
	urldate = {2020-11-17},
	journal = {Dike Verlag},
	file = {Snapshot:C\:\\Users\\pdanio\\Zotero\\storage\\J6HLBKSZ\\AJP-2-2013.html:text/html}
}

repository: pdanio/academic-kickstart

repo_name: pdanio/academic-kickstart


text:
nav.navbar.navbar-default {
  margin-bottom: 0;
}

.navbar-brand {
  width: 120px;
  text-align: center;
  background-color: rgb(230, 123, 23);
  color: #ffffff;
}

.navbar-brand:hover {
  background-color: rgb(255, 166, 77);
}

repository: alephao/obk-web

repo_name: alephao/obk-web


text:
DESCRIPTION = "gnome system tools backends"
LICENSE = "GPLv3"
LIC_FILES_CHKSUM = "file://COPYING;md5=d32239bcb673463ab874e80d47fae504"

DEPENDS = "dbus dbus-glib glib-2.0 polkit"

inherit gnome pkgconfig update-rc.d gettext

SRC_URI[archive.md5sum] = "edae148b31342aecae035051adc70c74"
SRC_URI[archive.sha256sum] = "1dbe5177df46a9c7250735e05e77129fe7ec04840771accfa87690111ca2c670"

SRC_URI += " \
            file://system-tools-backends \
"

# This needs to move to meta-angstrom
SRC_URI_append_angstrom = " \
            file://add-angstrom-distro.patch \
"

EXTRA_OECONF = " --with-net-dbus=${libdir}/perl5 "

do_configure() {
    rm missing || true
    automake --add-missing
    sed -i -e 's:CC=$(CC):CC="$(CC)":g' ${S}/Net-DBus/Makefile.am
    sed -i -e 's:CC=$(CC):CC="$(CC)":g' ${S}/Net-DBus/Makefile.in
    libtoolize --force --install
    aclocal
    gnu-configize
    oe_runconf
    cp ${STAGING_BINDIR_CROSS}/${HOST_SYS}-libtool ${S}
}

do_install_append () {
    install -d ${D}/${sysconfdir}/init.d
    install -m 0755 ${WORKDIR}/system-tools-backends ${D}/${sysconfdir}/init.d/
}

INITSCRIPT_NAME = "system-tools-backends"
INITSCRIPT_PARAMS = "start 50 2 3 4 5 . stop 70 1 ."

# Shadow added so there is a full adduser/deluser
# (Gnome images tend to pull in shadow anyway)
RDEPENDS_${PN} = "shadow"

FILES_${PN} += " ${sysconfdir}/dbus-1/system.d"
FILES_${PN} += " ${libdir}/pkgconfig"
FILES_${PN} += " ${datadir}/dbus-1/system-services"
FILES_${PN} += " ${datadir}/system-tools-backends-2.0/files"
FILES_${PN} += " ${datadir}/system-tools-backends-2.0/scripts"
FILES_${PN} += " ${datadir}/polkit*"

repository: ExorEmbedded/exor-workspace

repo_name: ExorEmbedded/exor-workspace


text:
include libnfnetlink.inc

PR = "${INC_PR}.1"

do_configure() {
	oe_runconf
}

SRC_URI[libnfnetlink-0.0.30.md5sum] = "7fd3c8ddc03d42fa9f0177a17a38f163"
SRC_URI[libnfnetlink-0.0.30.sha256sum] = "a6a336a5b3e063748d93ae910bbf6b2d36ead9f9ecd6011b14325b8814b54bc2"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty


text:
@article{marti2018tabu,
 author = {Martı́, Rafael and Mart\ńez-Gavara, Anna and Sánchez-Oro, Jesús and Duarte, Abraham},
 journal = {Computers & Operations Research},
 pages = {1--12},
 publisher = {Pergamon},
 title = {Tabu search for the dynamic bipartite drawing problem},
 volume = {91},
 year = {2018}
}

repository: jesussanchezoro/academic-kickstart

repo_name: jesussanchezoro/academic-kickstart


text:
@Miscellaneous {narayanamurthy2013,
author       = {Shravan Narayanamurthy and Markus Weimer and Dhruv Mahajan and Tyson Condie and
                Sundararajan Sellamanickam and S. Sathiya Keerthi},
publisher    = {NIPS 2013 BigLearn Workshop},
title        = {Towards Resource-Elastic Machine Learning},
url          = {http://research.microsoft.com/apps/pubs/default.aspx?id=217296},
year         = {2013}
}

repository: apache/reef

repo_name: apache/reef


text:
.checkbox-container {
  cursor: pointer;
  position: relative;
  height: 1em;
  display: flex;
  align-items: center; }

.checkbox-input {
  margin: 0 0.4em 0 0;
  width: 14px;
  height: 14px;
  border-radius: 4px;
  box-shadow: #999999 0px 0px 0px 1px inset; }

repository: cratebind/cratebind-storybook

repo_name: cratebind/cratebind-storybook


text:
@article{MR1204835,
 author = {Pérez, Joaquín and Ros, Antonio},
 doi = {10.1007/BF01444900},
 fjournal = {Mathematische Annalen},
 issn = {0025-5831},
 journal = {Math. Ann.},
 mrclass = {53A10 (53C42)},
 mrnumber = {1204835},
 mrreviewer = {Toru Ishihara},
 number = {3},
 pages = {513--525},
 title = {Some uniqueness and nonexistence theorems for embedded minimal
surfaces},
 url = {https://doi.org/10.1007/BF01444900},
 volume = {295},
 year = {1993}
}

repository: torralbofco/geometric-analysis-fork

repo_name: torralbofco/geometric-analysis-fork


text:
DESCRIPTION = "Packagegroup for base embedded Linux image"
LICENSE = "CLOSED"
PR = "r0"

inherit packagegroup

MACHINE_EXTRA_INSTALL ?= ""
WIFI_IMAGE_INSTALL = "rtl8723bu rtl8192cu edimax7822ulc rtwpriv "
TEST_IMAGE_INSTALL = "testscripts alsa-utils"
NTP_IMAGE_INSTALL = "ntp-tickadj ntp ntpdate ntp-utils"
FS_TOOLS_INSTALL = "util-linux e2fsprogs dosfstools parted"
NET_TOOLS_INSTALL = "net-tools iperf iptables curl"
NAND_IMAGE_INSTALL = "mtd-utils imx-kobs mtd-utils-ubifs u-boot-fw-utils"
3G_IMAGE_INSTALL = "minicom ppp"
PACKAGE_IMAGE_INSTALL = "smartpm"
SUPPORT_IMAGE_INSTALL = "bc i2c-tools udev udev-extraconf udisks sqlite3 dbus watchdog libmodbus openssh-sftp-server"

RDEPENDS_${PN} = "\
        kernel-modules \
        ca-certificates \
        tzdata tzdata-misc tzdata-posix tzdata-right tzdata-africa \
	tzdata-americas tzdata-antarctica tzdata-arctic tzdata-asia \
	tzdata-atlantic tzdata-australia tzdata-europe tzdata-pacific \
        connman \
	connman-client \
	ofono	\
	ofono-tests \
	usb-modeswitch \
	usb-modeswitch-data \
	${NTP_IMAGE_INSTALL} \
	${FS_TOOLS_INSTALL} \
	${NET_TOOLS_INSTALL} \
	${NAND_IMAGE_INSTALL} \
	${3G_IMAGE_INSTALL} \
	${SUPPORT_IMAGE_INSTALL} \
	${PACKAGE_IMAGE_INSTALL} \
	${WIFI_IMAGE_INSTALL} \
	${MACHINE_EXTRA_INSTALL} \
"

repository: thotakabsp/Morty

repo_name: thotakabsp/Morty


text:
SUMMARY = "Tools for GUPnP"
LICENSE = "GPLv2+"
LIC_FILES_CHKSUM = "file://COPYING;md5=751419260aa954499f7abaabaa882bbe \
                    file://src/network-light/main.c;beginline=1;endline=21;md5=2c39b3a000495dabd4932f231c7efed8"
DEPENDS = "gupnp gupnp-av gtk+3 glib-2.0-native intltool-native"
RRECOMMENDS_${PN} = "adwaita-icon-theme"

SRC_URI = "http://download.gnome.org/sources/${BPN}/0.10/${BPN}-${PV}.tar.xz"
SRC_URI[md5sum] = "8c66d4aca756478615761a26ed7c8dba"
SRC_URI[sha256sum] = "41da7ff5ba8e2425adcb64ca5e04c81f57ca20ec6fdb84923939fdad42c6a18d"
inherit features_check meson pkgconfig gettext gtk-icon-cache

REQUIRED_DISTRO_FEATURES = "x11"

repository: ni/meta-openembedded

repo_name: ni/meta-openembedded

branch_name: refs/heads/nilrt/master/hardknott


text:
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.

file(GLOB_RECURSE onnxruntime_graph_src CONFIGURE_DEPENDS
  "${ONNXRUNTIME_INCLUDE_DIR}/core/graph/*.h"
  "${ONNXRUNTIME_ROOT}/core/graph/*.h"
  "${ONNXRUNTIME_ROOT}/core/graph/*.cc"
  )

if (onnxruntime_DISABLE_CONTRIB_OPS)
  list(REMOVE_ITEM onnxruntime_graph_src
    "${ONNXRUNTIME_ROOT}/core/graph/contrib_ops/*.h"
    "${ONNXRUNTIME_ROOT}/core/graph/contrib_ops/*.cc"
    )
endif()

if(NOT onnxruntime_USE_AUTOML)
  list(REMOVE_ITEM onnxruntime_graph_src
    "${ONNXRUNTIME_ROOT}/core/graph/automl_ops/*.h"
    "${ONNXRUNTIME_ROOT}/core/graph/automl_ops/*.cc"
    )
endif()

if(NOT onnxruntime_USE_DML)
  list(REMOVE_ITEM onnxruntime_graph_src
    "${ONNXRUNTIME_ROOT}/core/graph/dml_ops/*.h"
    "${ONNXRUNTIME_ROOT}/core/graph/dml_ops/*.cc"
    )
endif()

file(GLOB_RECURSE onnxruntime_ir_defs_src CONFIGURE_DEPENDS
    "${ONNXRUNTIME_ROOT}/core/defs/*.cc"
)

add_library(onnxruntime_graph ${onnxruntime_graph_src} ${onnxruntime_ir_defs_src})
add_dependencies(onnxruntime_graph onnx_proto)
onnxruntime_add_include_to_target(onnxruntime_graph onnxruntime_common onnx onnx_proto protobuf::libprotobuf)

target_include_directories(onnxruntime_graph PRIVATE ${ONNXRUNTIME_ROOT})
set_target_properties(onnxruntime_graph PROPERTIES FOLDER "ONNXRuntime")
set_target_properties(onnxruntime_graph PROPERTIES LINKER_LANGUAGE CXX)
install(DIRECTORY ${PROJECT_SOURCE_DIR}/../include/onnxruntime/core/graph  DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/onnxruntime/core)
source_group(TREE ${REPO_ROOT} FILES ${onnxruntime_graph_src} ${onnxruntime_ir_defs_src})

if (WIN32)
    set(onnxruntime_graph_static_library_flags
        -IGNORE:4221 # LNK4221: This object file does not define any previously undefined public symbols, so it will not be used by any link operation that consumes this library
    )

    set_target_properties(onnxruntime_graph PROPERTIES
        STATIC_LIBRARY_FLAGS "${onnxruntime_graph_static_library_flags}")

    target_compile_options(onnxruntime_graph PRIVATE
        /EHsc   # exception handling - C++ may throw, extern "C" will not
    )

    # Add Code Analysis properties to enable C++ Core checks. Have to do it via a props file include.
    set_target_properties(onnxruntime_graph PROPERTIES VS_USER_PROPS ${PROJECT_SOURCE_DIR}/EnableVisualStudioCodeAnalysis.props)
endif()

repository: nihui/onnxruntime

repo_name: nihui/onnxruntime

extension: cmake


text:
@article{baker2009action,
  title={Action understanding as inverse planning},
  author={Baker, Chris L and Saxe, Rebecca and Tenenbaum, Joshua B},
  journal={Cognition},
  volume={113},
  number={3},
  pages={329--349},
  year={2009},
  publisher={Elsevier}
}


text:
@article{hartmann_robust_2020,
 abstract = {Integrating robotic systems in architectural and construction processes is of core interest to increase the efficiency of the building industry. Automated planning for such systems enables design analysis tools and facilitates faster design iteration cycles for designers and engineers. However, generic task-and-motion planning (TAMP) for long-horizon construction processes is beyond the capabilities of current approaches. In this paper, we develop a multi-agent TAMP framework for long horizon problems such as constructing a full-scale building. To this end we extend the Logic-Geometric Programming framework by sampling-based motion planning,a limited horizon approach, and a task-specific structural stability optimization that allow an effective decomposition of the task. We show that our framework is capable of constructing a large pavilion built from several hundred geometrically unique building elements from start to end autonomously.},
 author = {Hartmann, Valentin N. and Oguz, Ozgur S. and Driess, Danny and Toussaint, Marc and Menges, Achim},
 copyright = {All rights reserved},
 file = {Hartmann_et_al_2020_Robust_Task_and_Motion_Planning_for_Long-Horizon_Architectural_Construction.pdf:/home/oz/gdrive/zotero/Hartmann_et_al_2020_Robust_Task_and_Motion_Planning_for_Long-Horizon_Architectural_Construction.pdf:application/pdf},
 journal = {arXiv:2003.07754 [cs]},
 keywords = {myself},
 month = {March},
 note = {arXiv: 2003.07754},
 title = {Robust Task and Motion Planning for Long-Horizon Architectural Construction Planning},
 url = {http://arxiv.org/abs/2003.07754},
 urldate = {2020-05-25},
 year = {2020}
}

repository: Oz-Oguz/academic-kickstart

repo_name: Oz-Oguz/academic-kickstart


text:
@article{Maruyoshi:2016caf,
 archiveprefix = {arXiv},
 author = {Maruyoshi, Kazunobu and Yagi, Junya},
 doi = {10.1093/ptep/ptw151},
 eprint = {1606.01041},
 journal = {PTEP},
 number = {11},
 pages = {113B01},
 primaryclass = {hep-th},
 reportnumber = {IMPERIAL-TP-16-KM-01},
 title = {Surface defects as transfer matrices},
 volume = {2016},
 year = {2016}
}

repository: jnyg/starter-academic

repo_name: jnyg/starter-academic


text:
@article {type-your-key-here,
  author = "Sérgio Soares and Eduardo Laureano and Paulo Borba",
  journal = "ACM SIGPLAN Notices",
  title = "Implementing distribution and persistence aspects with AspectJ",
  year = "2002",
  pages = "174-190"
}

repository: pauloborba/academic-kickstart

repo_name: pauloborba/academic-kickstart


text:
SUMMARY = "Device::Gsm - Perl extension to interface GSM phones / modems"
AUTHOR = "Cosimo Streppone <cosimo@cpan.org>"
HOMEPAGE = "https://metacpan.org/module/Device::Gsm"
SECTION = "libs"
LICENSE = "Artistic-1.0 | GPL-1.0+"
LIC_FILES_CHKSUM = "file://README;md5=3f0b149e4ed2b3520632c786f3d1ba9a"

SRC_URI = "http://cpan.metacpan.org/authors/id/C/CO/COSIMO/Device-Gsm-1.60.tar.gz"
SRC_URI[md5sum] = "1a1fa45a9b5415f1149610a06b7ce9c9"
SRC_URI[sha256sum] = "9739904d0022d6cf65f27b0ef91dbe4ce7c1cd7ef06dbb2c3e3b09639d8fc0ed"

S = "${WORKDIR}/Device-Gsm-${PV}"

inherit cpan

RDEPENDS_${PN} += "libdevice-modem-perl \
                   perl-module-time-hires \
                   libdevice-serialport-perl \
                   libtest-more-perl \
                   "

RPROVIDES_${PN} += "libdevice-gsm-pdu \
                    libdevice-gsm-sms \
                    libdevice-gsm-charset \
                    libdevice-gsm-networks \
                    libsms-token-perl \
                    libsms-token-da \
                    libsms-token-dcs \
                    libsms-token-dt \
                    libsms-token-mr \
                    libsms-token-oa \
                    libsms-token-pdutype \
                    libsms-token-pid \
                    libsms-token-sca \
                    libsms-token-scts \
                    libsms-token-st \
                    libsms-token-ud \
                    libsms-token-udh \
                    libsms-token-vp \
                    "

BBCLASSEXTEND = "native"


text:
require mmsd.inc

SRCREV = "c259df5ca9f436ecfe2f614c752080bbcfb95f0b"
PV = "0.0+git${SRCPV}"

SRC_URI  = " \
    git://git.kernel.org/pub/scm/network/ofono/mmsd.git;protocol=git;branch=master \
    file://0001-Switch-to-dbus-system-bus.patch \
    file://mmsd.conf \
    file://mmsd.service \
"
S = "${WORKDIR}/git"

SYSTEMD_PACKAGES = "${PN}"
SYSTEMD_SERVICE:${PN} = "${PN}.service"

inherit autotools-brokensep systemd

do_configure:prepend () {
  ${S}/bootstrap
}

do_install:append() {
    install -d ${D}${sysconfdir}/dbus-1/system.d
    install -m 0644 ${WORKDIR}/${PN}.conf ${D}${sysconfdir}/dbus-1/system.d/

    install -d ${D}${systemd_unitdir}/system
    install -m 0644 ${WORKDIR}/${PN}.service ${D}${systemd_unitdir}/system/
}

repository: webOS-ports/meta-webos-ports

repo_name: webOS-ports/meta-webos-ports

branch_name: refs/heads/kirkstone