text:
@article{megchelenbrink2014optgpsampler,
  title={optGpSampler: an improved tool for uniformly sampling the solution-space of genome-scale metabolic networks},
  author={Megchelenbrink, Wout and Huynen, Martijn and Marchiori, Elena},
  journal={PloS one},
  volume={9},
  number={2},
  pages={e86587},
  year={2014},
  publisher={Public Library of Science},
  doi={10.1371/journal.pone.0086587},
}

@article{guebila2018dynamic,
  title={Dynamic load balancing enables large-scale flux variability analysis},
  author={Guebila, Marouen Ben},
  journal={bioRxiv},
  pages={440701},
  year={2018},
  publisher={Cold Spring Harbor Laboratory},
  doi={10.1101/440701},
}

@inproceedings{nickolls2008scalable,
  title={Scalable parallel programming},
  author={Nickolls, John and Buck, Ian and Garland, Michael},
  booktitle={2008 IEEE Hot Chips 20 Symposium (HCS)},
  pages={40--53},
  year={2008},
  organization={IEEE},
  doi={10.1145/1365490.1365500},
}

@article{kaufman1998direction,
  title={Direction choice for accelerated convergence in hit-and-run sampling},
  author={Kaufman, David E and Smith, Robert L},
  journal={Operations Research},
  volume={46},
  number={1},
  pages={84--95},
  year={1998},
  publisher={INFORMS},
  doi={10.1287/opre.46.1.84},
}

@InProceedings{VBCG_HPCS14,
   author =       {S. Varrette and P. Bouvry and H. Cartiaux and F. Georgatos},
   title =        {Management of an Academic HPC Cluster: The UL Experience},
   booktitle =    {Proc. of the 2014 Intl. Conf. on High Performance Computing \& Simulation (HPCS 2014)},
   year =         {2014},
   pages =        {959--967},
   month =        {July},
   address =      {Bologna, Italy},
   publisher =    {IEEE},
   doi={10.1109/hpcsim.2014.6903792},
}

@article{heirendt2019creation,
  title={Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0},
  author={Heirendt, Laurent and Arreckx, Sylvain and Pfau, Thomas and Mendoza, Sebasti{\'a}n N and Richelle, Anne and Heinken, Almut and Haraldsd{\'o}ttir, Hulda S and Wachowiak, Jacek
and Keating, Sarah M and Vlasov, Vanja and others},
  journal={Nature protocols},
  pages={1},
  year={2019},
  publisher={Nature Publishing Group},
  doi={10.1038/s41596-018-0098-2},
}

@article{o2015using,
  title={Using genome-scale models to predict biological capabilities},
  author={O’Brien, Edward J and Monk, Jonathan M and Palsson, Bernhard O},
  journal={Cell},
  volume={161},
  number={5},
  pages={971--987},
  year={2015},
  publisher={Elsevier},
  doi={10.1016/j.cell.2015.05.019},
}

@article{mahadevan2003effects,
  title={The effects of alternate optimal solutions in constraint-based genome-scale metabolic models},
  author={Mahadevan, R and Schilling, CH},
  journal={Metabolic engineering},
  volume={5},
  number={4},
  pages={264--276},
  year={2003},
  publisher={Elsevier},
  doi={10.1016/j.ymben.2003.09.002},
}

@article{dagum1998openmp,
  title={OpenMP: An industry-standard API for shared-memory programming},
  author={Dagum, Leonardo and Menon, Ramesh},
  journal={Computing in Science \& Engineering},
  number={1},
  pages={46--55},
  year={1998},
  publisher={IEEE},
  doi={10.1109/99.660313},
}
@article{mahadevan2005applications,
  title={Applications of metabolic modeling to drive bioprocess development for the production of value-added chemicals},
  author={Mahadevan, Radhakrishnan and Burgard, Anthony P and Famili, Iman and Van Dien, Steve and Schilling, Christophe H},
  journal={Biotechnology and bioprocess engineering},
  volume={10},
  number={5},
  pages={408},
  year={2005},
  publisher={Springer},
  doi={10.1007/bf02989823}
}


text:
KV = "4.10.12"
SRCDATE = "20191123"

require zgemma-dvb-modules.inc

SRC_URI[arm.md5sum] = "e9ce3268385062b5da7f881ccf46ce65"
SRC_URI[arm.sha256sum] = "1f598fbf7d054c38425ee9f509d1e3add9df93122d6eda8964b4a78e441f238d"

COMPATIBLE_MACHINE = "h7"

PROVIDES  = "virtual/dvb-driver"
RPROVIDES_${PN} = "virtual/dvb-driver"

repository: neutrino-hd/meta-zgemma

license_type: permissive

repo_name: neutrino-hd/meta-zgemma

branch_name: refs/heads/master

extension: bb


text:
# The set of languages for which implicit dependencies are needed:
set(CMAKE_DEPENDS_LANGUAGES
  "CXX"
  )
# The set of files for implicit dependencies of each language:
set(CMAKE_DEPENDS_CHECK_CXX
  "C:/Users/AlexFan/Desktop/CI/2/GBN/src/GBN.cpp" "C:/Users/AlexFan/Desktop/CI/2/GBN/cmake-build-debug/CMakeFiles/GBN.dir/src/GBN.cpp.obj"
  "C:/Users/AlexFan/Desktop/CI/2/GBN/src/GBNReceiver.cpp" "C:/Users/AlexFan/Desktop/CI/2/GBN/cmake-build-debug/CMakeFiles/GBN.dir/src/GBNReceiver.cpp.obj"
  "C:/Users/AlexFan/Desktop/CI/2/GBN/src/GBNSender.cpp" "C:/Users/AlexFan/Desktop/CI/2/GBN/cmake-build-debug/CMakeFiles/GBN.dir/src/GBNSender.cpp.obj"
  )
set(CMAKE_CXX_COMPILER_ID "GNU")

# The include file search paths:
set(CMAKE_CXX_TARGET_INCLUDE_PATH
  "../include"
  )

# Targets to which this target links.
set(CMAKE_TARGET_LINKED_INFO_FILES
  )

# Fortran module output directory.
set(CMAKE_Fortran_TARGET_MODULE_DIR "")

license: MIT

repository: AlexFanw/HUSTER-CS

repo_name: AlexFanw/HUSTER-CS

extension: cmake


text:
require linux-common.inc
require recipes-kernel/linux/linux-base_git.bb

PV = "5.10"

PROVIDES += " linux-k510"
LIC_FILES_CHKSUM = "file://COPYING;md5=6bc538ed5bd9a7fc9398086aedcd7e46"

FILESEXTRAPATHS_prepend := "${THISDIR}/files:"

FILESEXTRAPATHS_append := ":${LAYERDIR_DEBIAN_debian}/recipes-kernel/linux/files/"

KERNEL_CONFIG_COMMAND = "oe_runmake_call O=${B} -C ${S} olddefconfig"

CVE_VERSION = "${LINUX_CVE_VERSION}"

addtask shared_workdir_modules after do_compile_kernelmodules before do_sizecheck

do_shared_workdir_modules () {
        cd ${B}
        kerneldir=${STAGING_KERNEL_BUILDDIR}

        install -d $kerneldir/scripts
        [ -e scripts/module.lds ] && cp scripts/module.lds $kerneldir/scripts
}

do_shared_workdir_prepend () {
        cd ${B}
        touch Module.symvers
}

# CVE-2021-43057: This issue was introduced in 5.13-rc1. 5.10.y is not affected.
CVE_CHECK_WHITELIST = "CVE-2021-43057"

branch_name: refs/heads/warrior

gha_license_id: MIT

gha_language: Shell


text:
DESCRIPTION = "Meta-package for Enlightenment/X11 Core"
PACKAGES = "task-e-x11-core"
PROVIDES = "task-e-x11-core"
PR = "r6"

FEED_URIS += "x11##http://ewi546.ewi.utwente.nl/mirror/www.openzaurus.org/official/unstable/3.5.2/feed/x11 \
              e##http://ewi546.ewi.utwente.nl/mirror/www.openzaurus.org/official/unstable/3.5.2/feed/e"

ALLOW_EMPTY = 1

#
# X
#
DEPENDS =                  "diet-x11 rxvt-unicode xstroke xtscal xrandr xmodmap xdpyinfo fontconfig \
                            ttf-bitstream-vera chkhinge"
RDEPENDS_task-e-x11-core = "         rxvt-unicode xstroke xtscal xrandr xmodmap xdpyinfo            \
                            ttf-bitstream-vera chkhinge"

#
# E-core
#
DEPENDS +=                  "entrance e-wm"
RDEPENDS_task-e-x11-core += "entrance e-wm"

repository: Terentyev/familiar-linux

repo_name: Terentyev/familiar-linux


text:
SUMMARY = "OpenBMC gdbus library"
DESCRIPTION = "libopenbmc_intf provides a set of gpio access \
methods and the GDBUS skeleton code for the org.openbmc DBUS API."
DEPENDS += "glib-2.0"
DEPENDS += "cjson"
PV = "1.0+git${SRCPV}"
PR = "r1"

SRC_URI += "file://gpio_defs.json"

SKELETON_DIR = "libopenbmc_intf"

inherit skeleton
inherit pkgconfig

do_install() {
        oe_runmake install DESTDIR=${D}
        install -d ${D}${sysconfdir}/default/obmc/gpio/
        install -m 0644 ${WORKDIR}/gpio_defs.json ${D}/${sysconfdir}/default/obmc/gpio/
}

# Ensure the library is not in the dev package
FILES_SOLIBSDEV = ""
# Now add the link to the production package
FILES:${PN} += "${libdir}/libopenbmc_intf.so"

# Users of libopenbmc_intf use custom makefiles that do not
# support the proper library version detection and linking.
# Because of that, a link must be created within the
# rootfs for applicaitons to use this library.
# This next line tells bitbake to skip the check which
# ensures no links are put in the rootfs
INSANE_SKIP:${PN} += "dev-so"

repository: openbmc/openbmc

repo_name: openbmc/openbmc

gha_license_id: NOASSERTION

gha_language: Python


text:
@Article{martins2019machine,
  author={Martins, Joana S. and Magalh{\~a}es, Carlos and Rocha, Miguel and Os{\'o}rio, Nuno S.},
  title={Machine Learning-Enhanced T Cell Neoepitope Discovery for Immunotherapy Design},
  journal={Cancer informatics},
  volume={18},
  pages={1176935119852081},
  year={2019},
  publisher={SAGE Publications Sage UK: London, England}
}

repository: JoanaSantosMartins/academic-kickstart

repo_name: JoanaSantosMartins/academic-kickstart

extension: bib


text:
# Start with the minimal bundle image as a base
require minimal-nilrt-bundle-image.bb

BASEROOTFS_IMAGE = "lvcomms-nilrt-image"

repository: NIwkoe/meta-nilrt

repo_name: NIwkoe/meta-nilrt

branch_name: refs/heads/nilrt/master/sumo


text:
@inproceedings{coates2011analysis,
  added-at = {2013-02-20T09:03:53.000+0100},
  author = {Coates, A. and Lee, H. and Ng, A.Y.},
  biburl = {http://www.bibsonomy.org/bibtex/2bcb2c1fd335ae57362cdf348ff727589/jaeschke},
  booktitle = {Proceedings of the Fourteenth International Conference on Artificial Intelligence and Statistics},
  editor = {Gordon, Geoffrey and Dunson, David and Dudík, Miroslav},
  interhash = {46cfb4b5b1c16c79a966512e07f67158},
  intrahash = {bcb2c1fd335ae57362cdf348ff727589},
  keywords = {feature learning machine ml unsupervised},
  pages = {215--223},
  publisher = {JMLR W\&CP},
  series = {JMLR Workshop and Conference Proceedings},
  timestamp = {2014-07-28T15:57:31.000+0200},
  title = {An analysis of single-layer networks in unsupervised feature learning},
  url = {http://jmlr.csail.mit.edu/proceedings/papers/v15/coates11a.html},
  volume = 15,
  year = 2011
}

@article{conv_kmeans,
  author    = {Aysegul Dundar and
               Jonghoon Jin and
               Eugenio Culurciello},
  title     = {Convolutional Clustering for Unsupervised Learning},
  journal   = {CoRR},
  volume    = {abs/1511.06241},
  year      = {2015},
  url       = {http://arxiv.org/abs/1511.06241},
  timestamp = {Tue, 01 Dec 2015 19:22:34 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/DundarJC15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@article{baidu,
  author    = {Ren Wu and
               Shengen Yan and
               Yi Shan and
               Qingqing Dang and
               Gang Sun},
  title     = {Deep Image: Scaling up Image Recognition},
  journal   = {CoRR},
  volume    = {abs/1501.02876},
  year      = {2015},
  url       = {http://arxiv.org/abs/1501.02876},
  timestamp = {Mon, 02 Feb 2015 14:12:25 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/WuYSDS15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@article{BN,
  author    = {Sergey Ioffe and
               Christian Szegedy},
  title     = {Batch Normalization: Accelerating Deep Network Training by Reducing
               Internal Covariate Shift},
  journal   = {CoRR},
  volume    = {abs/1502.03167},
  year      = {2015},
  url       = {http://arxiv.org/abs/1502.03167},
  timestamp = {Mon, 02 Mar 2015 14:17:34 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/IoffeS15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@article{exemplar,
  author    = {Alexey Dosovitskiy and
               Jost Tobias Springenberg and
               Martin A. Riedmiller and
               Thomas Brox},
  title     = {Discriminative Unsupervised Feature Learning with Convolutional Neural
               Networks},
  journal   = {CoRR},
  volume    = {abs/1406.6909},
  year      = {2014},
  url       = {http://arxiv.org/abs/1406.6909},
  timestamp = {Wed, 01 Apr 2015 20:06:15 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/DosovitskiySRB14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@article{tsne,
  added-at = {2010-02-21T07:58:39.000+0100},
  author = {van der Maaten, L.J.P. and Hinton, G.E.},
  biburl = {http://www.bibsonomy.org/bibtex/2d721e0c952141718d2e8cf658ffe9a3f/ds9},
  interhash = {d3658497eff9fea21e66bb43320a822a},
  intrahash = {d721e0c952141718d2e8cf658ffe9a3f},
  keywords = {da mds projection visualization},
  timestamp = {2010-02-21T07:58:39.000+0100},
  title = {Visualizing High-Dimensional Data Using t-SNE},
  url = {https://lvdmaaten.github.io/publications/papers/JMLR_2008.pdf},
  year = 2008
}


text:
SUMMARY = "OpenSwitch system reboot script."
LICENSE = "Apache-2.0"
LIC_FILES_CHKSUM = "file://${COMMON_LICENSE_DIR}/Apache-2.0;md5=89aea4e17d99a7cacdbeed46a0096b10"

RDEPENDS_${PN} = "bash"

SRC_URI = "file://switch_reboot@.service \
           file://switch_reboot.sh \
"

S = "${WORKDIR}"

do_install () {
    install -d ${D}${sbindir}
    install -d ${D}${systemd_unitdir}/system

    install -m 0644 ${WORKDIR}/switch_reboot@.service ${D}${systemd_unitdir}/system/switch-reboot@.service
    install -m 0755 ${WORKDIR}/switch_reboot.sh ${D}${sbindir}/ops-reboot
}

FILES_${PN} += "${systemd_unitdir}/system/switch-reboot@.service ${sbindir}/ops-reboot"
SYSTEMD_PACKAGES = "${PN}"

inherit systemd

repository: billyjbryant/ops-build

repo_name: billyjbryant/ops-build


text:
@article{ison2015tools,
  title={Tools and data services registry: a community effort to document bioinformatics resources},
  author={Ison, Jon and Rapacki, Kristoffer and M{\'e}nager, Herv{\'e} and Kala{\v{s}}, Mat{\'u}{\v{s}} and Rydza, Emil and Chmura, Piotr and Anthon, Christian and Beard, Niall and Berka, Karel and Bolser, Dan and others},
  journal={Nucleic acids research},
  volume={44},
  number={D1},
  pages={D38--D47},
  year={2015},
  publisher={Oxford University Press},
  doi={10.1093/nar/gkv1116}
}

@article{whetzel2011bioportal,
  title={BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications},
  author={Whetzel, Patricia L and Noy, Natalya F and Shah, Nigam H and Alexander, Paul R and Nyulas, Csongor and Tudorache, Tania and Musen, Mark A},
  journal={Nucleic acids research},
  volume={39},
  number={suppl\_2},
  pages={W541--W545},
  year={2011},
  publisher={Oxford University Press},
  doi={10.1093/nar/gkr469}
}
@inproceedings{jupp2015new,
  title={A new Ontology Lookup Service at EMBL-EBI.},
  author={Jupp, Simon and Burdett, Tony and Leroy, Catherine and Parkinson, Helen E},
  booktitle={SWAT4LS},
  pages={118--119},
  year={2015},
  url={{http://ceur-ws.org/Vol-1546/paper_29.pdf}}
}
@article{ison2013edam,
  title={EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats},
  author={Ison, Jon and Kala{\v{s}}, Mat{\'u}{\v{s}} and Jonassen, Inge and Bolser, Dan and Uludag, Mahmut and McWilliam, Hamish and Malone, James and Lopez, Rodrigo and Pettifer, Steve and Rice, Peter},
  journal={Bioinformatics},
  volume={29},
  number={10},
  pages={1325--1332},
  year={2013},
  publisher={Oxford University Press},
  doi={10.1093/bioinformatics/btt113}
}
@misc{
  d3js,
  author = {Mike Bostock},
  year = 2018,
  title = {{D3 is a JavaScript library for visualizing data with HTML, SVG, and CSS.}},
  howpublished = {https://d3js.org/},
  url = {https://d3js.org/}
}
@article{tudorache2013webprotege,
  title={WebProt{\'e}g{\'e}: A collaborative ontology editor and knowledge acquisition tool for the web},
  author={Tudorache, Tania and Nyulas, Csongor and Noy, Natalya F and Musen, Mark A},
  journal={Semantic web},
  volume={4},
  number={1},
  pages={89--99},
  year={2013},
  publisher={IOS Press},
  doi={10.3233/SW-2012-0057}
}
@article{hoehndorf2015aber,
author="Hoehndorf, Robert
and Slater, Luke
and Schofield, Paul N.
and Gkoutos, Georgios V.",
title="Aber-OWL: a framework for ontology-based data access in biology",
journal="BMC Bioinformatics",
year="2015",
month="Jan",
day="28",
volume="16",
number="1",
pages="26",
abstract="Many ontologies have been developed in biology and these ontologies increasingly contain large volumes of formalized knowledge commonly expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within these ontologies relies on the use of automated reasoning.",
issn="1471-2105",
doi="10.1186/s12859-015-0456-9",
url="https://doi.org/10.1186/s12859-015-0456-9"
}
@misc{brancotte2017biosphere,
  TITLE = {{Biosphere Web : un portail haut niveau pour une utilisation bioinformatique des clouds}},
  AUTHOR = {Brancotte, Bryan and Bedri, Mohamed and Lorenzo, Jonathan and Perrin Sandrine and S{\'e}n{\'e}, Fr{\'e}d{\'e}ric and Sepou Nga{\"i}lo, Awa and Blanchet, Christophe and Gibrat, Jean-Fran\c{c}ois},
  URL = {https://www.youtube.com/watch?v=gaopunfIqnc},
  NOTE = {Demo},
  HOWPUBLISHED = {{JOBIM (Journ{\'e}es Ouvertes Biologie Informatique Math{\'e}matiques)}},
  YEAR = {2017},
  MONTH = Jul,
}
@inproceedings{xiang2011ontobee,
  title={Ontobee: A Linked Data Server and Browser for Ontology Terms.},
  author={Xiang, Zuoshuang and Mungall, Chris and Ruttenberg, Alan and He, Yongqun},
  booktitle={ICBO},
  year={2011},
  doi={10.1093/nar/gkw918}
}
@article{afgan2016galaxy,
author = {Afgan, Enis and Baker, Dannon and van den Beek, Marius and Blankenberg, Daniel and Bouvier, Dave and Čech, Martin and Chilton, John and Clements, Dave and Coraor, Nate and Eberhard, Carl and Grüning, Björn and Guerler, Aysam and Hillman-Jackson, Jennifer and Von Kuster, Greg and Rasche, Eric and Soranzo, Nicola and Turaga, Nitesh and Taylor, James and Nekrutenko, Anton and Goecks, Jeremy},
title = {The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update},
journal = {Nucleic Acids Research},
volume = {44},
number = {W1},
pages = {W3-W10},
year = {2016},
doi = {10.1093/nar/gkw343},
URL = {http://dx.doi.org/10.1093/nar/gkw343},
eprint = {/oup/backfile/content_public/journal/nar/44/w1/10.1093_nar_gkw343/3/gkw343.pdf}
}
@article{ashburner2000go, title={Gene Ontology: tool for the unification of biology}, volume={25}, url={http://dx.doi.org/10.1038/75556}, DOI={10.1038/75556}, number={1}, journal={Nature Genetics}, publisher={Springer Nature}, author={Ashburner, Michael and Ball, Catherine A. and Blake, Judith A. and Botstein, David and Butler, Heather and Cherry, J. Michael and Davis, Allan P. and Dolinski, Kara and Dwight, Selina S. and Eppig, Janan T. and et al.}, year={2000}, month={May}, pages={25–29}}
@article{go2016go, title={Expansion of the Gene Ontology knowledgebase and resources}, volume={45}, url={http://dx.doi.org/10.1093/nar/gkw1108}, DOI={10.1093/nar/gkw1108}, number={D1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, year={2016}, month={Nov}, pages={D331–D338}}
@article{bostock2011d3,
  title={D$^3$ data-driven documents},
  author={Bostock, Michael and Ogievetsky, Vadim and Heer, Jeffrey},
  journal={IEEE transactions on visualization and computer graphics},
  volume={17},
  number={12},
  pages={2301--2309},
  year={2011},
  publisher={IEEE},
  doi={10.1109/TVCG.2011.185}
}

repository: edamontology/edam-browser

repo_name: edamontology/edam-browser

branch_name: refs/heads/main

gha_language: JavaScript


text:
SUMMARY = "Twisted Web Sockets"
HOMEPAGE = "https://github.com/MostAwesomeDude/txWS"

LICENSE = "Apache-2.0"
LIC_FILES_CHKSUM = "file://LICENSE;md5=76699830db7fa9e897f6a1ad05f98ec8"

DEPENDS = "python3-twisted python3-six python3-vcversioner python3-six-native python3-vcversioner-native"

RDEPENDS:${PN} += " \
    python3-six \
    python3-twisted \
"

SRC_URI = "git://github.com/MostAwesomeDude/txWS.git;branch=master;protocol=https"
SRCREV= "88cf6d9b9b685ffa1720644bd53c742afb10a414"

S = "${WORKDIR}/git"

inherit setuptools3

PIP_INSTALL_PACKAGE = "txWS"

repository: openembedded/meta-openembedded

repo_name: openembedded/meta-openembedded

gha_language: BitBake


text:
@article{ThiEtAl:Bmcbioinfo14,
 author = {T. Thi and L. Wang and J. Zhang and S. Maurer-Stroh and L. Cheng},
 bib2html_dl_pdf = {http://www.biomedcentral.com/content/pdf/1471-2105-15-300.pdf},
 bib2html_pubtype = {Journal},
 journal = {BMC Bioinformatics},
 number = {300},
 pages = {1-10},
 title = {Recognizing Flu-like Symptoms from Videos},
 volume = {15},
 year = {2014}
}

repository: Vision-and-Learning-Lab-UAlberta/home

repo_name: Vision-and-Learning-Lab-UAlberta/home


text:
@article{FDAGI2011,
  title = {Guidance for industry, process validation: general principles and practices},
  author = {FDA},
  year = {2011},
  month = Jan,
  url = {http://www.fda.gov/downloads/Drugs/Guidances/UCM070336.pdf},
  journal = {US Food and Drug Administration}
}

@book{burdick2017statistical,
  title={Statistical applications for chemistry, manufacturing and controls (CMC) in the pharmaceutical industry},
  author={Burdick, Richard K and LeBlond, David J and Pfahler, Lori B and Quiroz, Jorge and Sidor, Leslie and Vukovinsky, Kimberly and Zhang, Lanju},
  year={2017},
  publisher={Springer},
  doi = {10.1007/978-3-319-50186-4}
}

@Book{ggplot2,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
  doi = {10.1007/978-0-387-98141-3}
}

@Book{plotly,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly,
    and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
  doi = {10.1201/9780429447273}
}

@Manual{rproj,
     title = {R: A Language and Environment for Statistical Computing},
     author = {{R Core Team}},
     organization = {R Foundation for Statistical Computing},
     address = {Vienna, Austria},
     year = {2021},
     url = {https://www.R-project.org/}
   }

repository: allenzhuaz/PPQplan

repo_name: allenzhuaz/PPQplan


text:
require bug-osgi.inc
inherit jni-library

PR = "${INC_PR}.6+svnr${SRCREV}"
FILES_${PN} += "${JNI_LIB_DIR}/libLCD.so"

DEPENDS += "com.buglabs.common com.buglabs.bug.jni.common classpath virtual/kernel"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD


text:
Bombay|NIL|NIL
Stock|NIL|NIL
Exchange|NIL|NIL
Exchange|Bombay|NIL
Exchange|Stock|NIL
Exchange|BSE|NIL
BSE|NIL|NIL
remains|NIL|NIL
remains|Exchange|ARG1
remains|week|ARGM-TMP
open|NIL|NIL
following|NIL|NIL
week|NIL|NIL
week|a|NIL
week|onslaught|NIL
onslaught|NIL|NIL
First|NIL|NIL
Securities|NIL|NIL
Exchange|NIL|NIL
Board|NIL|NIL
India|NIL|NIL
accused|NIL|NIL
accused|First|ARGM-TMP
accused|Securities|ARG0
accused|Exchange|ARG0
accused|Board|ARG0
accused|India|ARG0
accused|market|ARG1
accused|ignoring|ARG2
accused|failing|ARG2
market|NIL|NIL
ignoring|NIL|NIL
failing|NIL|NIL
enforce|NIL|NIL
enforce|rules|ARG1
rules|NIL|NIL
Indian|NIL|NIL
market|NIL|NIL
market|Indian|NIL
already|NIL|NIL
fallen|NIL|NIL
fallen|market|ARG1
fallen|already|ARGM-TMP
fallen|aggravated|ARGM-ADV
48|NIL|NIL
percent|NIL|NIL
percent|48|NIL
percent|year|NIL
early|NIL|NIL
last|NIL|NIL
year|NIL|NIL
year|early|NIL
year|last|NIL
aggravated|NIL|NIL
aggravated|reaction|ARG0
negative|NIL|NIL
reaction|NIL|NIL
reaction|a|NIL
reaction|negative|NIL
reaction|budget|NIL
Indian|NIL|NIL
budget|NIL|NIL
budget|Indian|NIL
Friday|NIL|NIL
afternoon|NIL|NIL
afternoon|Friday|NIL
India|NIL|NIL
commercial|NIL|NIL
heart|NIL|NIL
heart|India|NIL
heart|commercial|NIL
heart|BSE|NIL
including|NIL|NIL
BSE|NIL|NIL
hit|NIL|NIL
hit|afternoon|ARGM-ADV
hit|heart|ARG1
hit|bombs|ARG2
car|NIL|NIL
bombs|NIL|NIL
bombs|car|NIL
militant|NIL|NIL
Sikh|NIL|NIL
group|NIL|NIL
group|a|NIL
group|militant|NIL
group|Sikh|NIL
claimed|NIL|NIL
claimed|group|ARG0
claimed|responsibility|ARG1
responsibility|NIL|NIL
Indian|NIL|NIL
officials|NIL|NIL
officials|Indian|NIL
still|NIL|NIL
suspect|NIL|NIL
suspect|claimed|ARGM-TMP
suspect|officials|ARG0
suspect|still|ARGM-TMP
suspect|extremists|ARG1
Moslem|NIL|NIL
extremists|NIL|NIL
extremists|Moslem|NIL
seeking|NIL|NIL
seeking|extremists|ARG0
seeking|return|ARG1
return|NIL|NIL
return|a|NIL
return|strife|NIL
communal|NIL|NIL
strife|NIL|NIL
strife|communal|NIL
BSE|NIL|NIL
was|BSE|AUX-SBJ
was|able|AUX-PRD
able|NIL|NIL
able|resume|NIL
resume|NIL|NIL
resume|trading|ARG1
limited|NIL|NIL
trading|NIL|NIL
trading|limited|NIL
slight|NIL|NIL
rise|NIL|NIL
rise|a|NIL
rise|slight|NIL
halted|NIL|NIL
halted|rise|ARG1
halted|explosion|ARG0
halted|Wednesday|ARGM-TMP
halted|Calcutta|ARGM-LOC
explosion|NIL|NIL
explosion|an|NIL
Wednesday|NIL|NIL
Calcutta|NIL|NIL

gha_language: Jupyter Notebook

extension: be


text:
DESCRIPTION = "SHR Phone FSO Daemon"
HOMEPAGE = "http://shr-project.org/"
LICENSE = "GPL"
SECTION = "x11/applications"
DEPENDS += " libfso-glib libshr-glib sqlite3 shr-specs libfsoframework"
SRCREV = "cc19fc95ae1a36f1a3d12bd13fce751cf4cf095f"
PV = "0.0.0+gitr${SRCPV}"
PR = "r5"

SRC_URI = "git://git.shr-project.org/repo/phonefsod.git;protocol=http;branch=master"
S = "${WORKDIR}/git"

inherit autotools update-rc.d

INITSCRIPT_NAME = "phonefsod"
INITSCRIPT_PARAMS = "defaults 75"

CONFFILES_${PN} = "${sysconfdir}/phonefsod.conf"


text:
@inproceedings{YangKTCN15,
 author = {Yang, Shuo and Kersting, Kristian and Terry, Greg and Carr, Jefferey and Natarajan, Sriraam},
 booktitle = {15th Conference on Artificial Intelligence in Medicine, AIME 2015},
 doi = {10.1007/978-3-319-19551-3_24},
 pages = {182--187},
 publisher = {Springer},
 series = {Lecture Notes in Computer Science},
 title = {Modeling Coronary Artery Calcification Levels from Behavioral Data
in a Clinical Study},
 volume = {9105},
 year = {2015}
}


text:
require ${COREBASE}/meta/recipes-bsp/u-boot/u-boot.inc

FILESEXTRAPATHS_prepend := "${THISDIR}/u-boot:"

SUMMARY = "U-Boot bootloader for HiSilicon Poplar"

LICENSE = "GPLv2+"
LIC_FILES_CHKSUM = "file://Licenses/README;md5=a2c678cfd4a4d97135585cad908541c6"

SRC_URI = "git://github.com/linaro/poplar-u-boot;protocol=git;branch=latest"
SRCREV = "d9afcaf973668b3a438a565e00a1a77464ab9143"

PV = "v2017.09+git${SRCPV}"

# u-boot needs devtree compiler to parse dts files
DEPENDS += "dtc-native bc-native"

PACKAGE_ARCH = "${MACHINE_ARCH}"

S = "${WORKDIR}/git"

UBOOT_EXTLINUX ??= "1"
UBOOT_EXTLINUX_LABELS ??= "default"
UBOOT_EXTLINUX_KERNEL_IMAGE_default ??= "../Image"
UBOOT_EXTLINUX_MENU_DESCRIPTION_default ??= "Linux Default"
UBOOT_EXTLINUX_FDTDIR ??= "../"
UBOOT_EXTLINUX_KERNEL_ARGS ??= "append mem=1G earlycon console=ttyAMA0"
UBOOT_EXTLINUX_ROOT ??= "root=/dev/mmcblk0p3 rootfstype=ext4 rootwait rw"


text:
@Article{gonzalezcabrera_psychometric_2020,
  title = {Psychometric properties of the triangulated version of the European Bullying Intervention Project Questionnaire: Prevalence across seven roles},
  volume = {57},
  issn = {0033-3085, 1520-6807},
  shorttitle = {Psychometric properties of the triangulated version of the European Bullying Intervention Project Questionnaire},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/pits.22320},
  doi = {10.1002/pits.22320},
  abstract = {This study created a Spanish triangulated version of the European Bullying Intervention Project Questionnaire and obtained indicators of its validity and reliability. This new tool allows researchers to triangulate and flexibly investigate the three main roles in school bullying, obtaining seven potential roles (pure victim, pure bully, pure bystander, bully/victim, victim/bystander, bully/bystander, and bully/victim/bystander). The sample was 2,068 adolescents and young adults aged 11–19 years (Mage = 14.2 ± 1.48 years old; 53.8% females). Confirmatory factor analysis indicated a good fit for the three‐related‐factor model and adequate reliability (ω \textgreater 0.91) in all dimensions. About 28.2% of the sample reported victimization; of whom only 2.9% were pure victims, 15.1% were victim/bystanders, and 9.8% were involved in all three roles (bully/victim/bystanders). Only 0.8% played the role of a pure bully, and 0.4% were bully/victims. The most prevalent profile was that of pure bystander (30%). These results are discussed in light of their importance for the interpretation of the prevalence of traditional bullying, and their implications for bullying assessments and interventions.},
  language = {en},
  number = {1},
  urldate = {2020-08-22},
  journal = {Psychology in the Schools},
  author = {Joaquin Gonzalez-Cabrera, and Nicolas Sanchez-Álvarez and Esther Calvete and Ana Leon-Mejia and Izaskun Orue and Juan Manuel Machimbarrena},
  month = {jan},
  year = {2020},
  pages = {78--90},
  file = {Full Text:C\:\\Users\\mmach\\Zotero\\storage\\85JZJ4P9\\Gonzalez‐Cabrera et al. - 2020 - Psychometric properties of the triangulated versio.pdf:application/pdf},
  pubtype = {2},
}

repository: mmachimbarrena/Pruebaweb

repo_name: mmachimbarrena/Pruebaweb


text:
@article{feynman_1954_Atomic-Theory-Twofluid-Model-Liquid-Helium,
 adsnote = {Provided by the SAO/NASA Astrophysics Data System},
 adsurl = {https://ui.adsabs.harvard.edu/abs/1954PhRv...94..262F},
 author = {Feynman, R. P.},
 doi = {10.1103/PhysRev.94.262},
 journal = {Physical Review},
 month = {April},
 number = {2},
 pages = {262--277},
 title = {Atomic Theory of the Two-Fluid Model of Liquid Helium},
 volume = {94},
 year = {1954}
}

repository: grpaulfr/academic-kickstart

repo_name: grpaulfr/academic-kickstart


text:
* {
    font-family: 'Century Gothic';
    padding: 0;
}

p {
    font-size: 1.15em;
}

.navbar {
    background: rgb(255, 255, 255);
    height: 50px;
    padding: 0;
}

.navbar-nav {
    margin: auto;
    display: flex;
    flex-wrap: wrap;
    width: 800px;
    height: 40px;
}

.nav-item {
    position: relative;
    width: 130px;
    height: 40px;
}

.nav-item a {
    color: rgb(0,0,0);
    position: absolute;
    bottom: 10px;
    min-width: max-content;
    font-weight: bold;
}

#user_log {
    color: rgb(50, 252, 0);
}

.carousel-item {
    height: 68vh;
    width: 100vw;
    flex-direction: column;
    justify-content: center;
}

.carousel-item img {
    position: relative;
    top: -300px;
}

.carousel-message {
    color: rgb(255, 255, 255);
    position: absolute;
    top: 50px;
    text-align: center;
    padding: 160px;
}

.carousel-indicators {
    bottom: 30px;
}

.carousel-indicators li {
    width: 10px;
    height: 10px;
    border-radius: 50%;
}

.button-buy {
    display: block;
    margin: auto;
    width: 100px;
    height: 30px;
    text-align: center;
    border: 2px solid rgb(255, 255, 255);
    color: rgb(255, 255, 255);
}

.footer {
    position: absolute;
    bottom: 0;
    width: 100vw;
    height: 250px;
    background: rgb(50,50,50);
}

.footer-text {
    color: rgb(255, 255, 255);
    width: 800px;
    height: 180px;
    text-align: center;
    margin: auto;
    margin-top: 20px;
    display: flex;
    flex-direction: column;
    justify-content: space-around;
}

#logBody {
    background-image: url('../sources/imgs/writing-notes-idea-conference.jpg');
    background-size: cover;
    margin: 0;
}

.form-view {
    background-color: rgba(100, 100, 100,0.9);
    display: flex;
    flex-wrap: wrap;
    justify-content: center;
    padding-top: 4vh;
    height: 96vh;
    width: 100vw;
}

.form-container {
    width: 440px;
    height: 90vh;
    margin: 10px;
}

.form-container form {
    background: rgb(182, 182, 182);
    padding: 20px;
    display: flex;
    flex-wrap: wrap;
    height: max-content;
    position: relative;
}

.form-container form a,span {
    color: rgb(255, 255, 255);
}

.form-text {
    margin: auto;
    text-align: center;
}

.form-inf-long-size {
    margin: 10px;
    width: 340px;
}

.form-inf-long-size input{
    width: 100%;
    height: 40px;
    background: rgb(58, 58, 58);
    color: rgb(255, 255, 255);
    border: 1px solid rgb(255, 255, 255);
}

.form-inf {
    width: 180px;
    height: 42;
    margin: 10px;
}

.form-inf input{
    width: 158px;
    height: 20px;
    background: rgb(58, 58, 58);
    color: rgb(255, 255, 255);
    border: 1px solid rgb(255, 255, 255);
    padding: 10px;
}

.input-icon {
    padding-left: 40px !important;
}

#full_name,#email {
    width: 128px
}

#log_email {
    background-image: url('../sources/imgs/001-user.png');
    background-repeat: no-repeat;
    background-position-x: 5px;
    background-position-y: 4px;
}

#log_password {
    background-image: url('../sources/imgs/003-house-key.png');
    background-repeat: no-repeat;
    background-position-x: 5px;
    background-position-y: 4px;
}

#full_name {
    background-image: url('../sources/imgs/001-user.png');
    background-repeat: no-repeat;
    background-position-x: 5px;
    background-position-y: 4px;
}

#email {
    background-image: url('../sources/imgs/002-mail-black-envelope-symbol.png');
    background-repeat: no-repeat;
    background-position-x: 5px;
    background-position-y: 4px;
}

.ancla {
    width: 380px;
    height: 100px;
    margin: auto;
}

.send {
    background: rgb(219, 62, 62);
    color: rgb(255, 255, 255);
    font-size: 0.8em;
    width: 120px;
    height: 40px;
    border: none;
    position: absolute;
    bottom: 25px;
    right: 25px;
}

extension: css


text:
@inproceedings{Yang:2011:TTE:1978942.1979319,
 acmid = {1979319},
 address = {New York, NY, USA},
 author = {Yang, Xing-Dong and Grossman, Tovi and Irani, Pourang and Fitzmaurice, George},
 booktitle = {Proceedings of the SIGCHI Conference on Human Factors in Computing Systems},
 doi = {10.1145/1978942.1979319},
 isbn = {978-1-4503-0228-9},
 keywords = {target expansion, touch input},
 location = {Vancouver, BC, Canada},
 numpages = {10},
 pages = {2585--2594},
 publisher = {ACM},
 series = {CHI '11},
 title = {TouchCuts and TouchZoom: Enhanced Target Selection for Touch Displays Using Finger Proximity Sensing},
 url = {http://doi.acm.org/10.1145/1978942.1979319},
 year = {2011}
}

repository: jmatejka/group-website

repo_name: jmatejka/group-website


text:
require quilt-native.inc

PR = "${INC_PR}.1"

SRC_URI_append = " file://fix_new_GNU_patch_detection.patch"

SRC_URI[md5sum] = "f77adda60039ffa753f3c584a286f12b"
SRC_URI[sha256sum] = "73fd760d3b5cbf06417576591dc37d67380d189392db9000c21b7cbebee49ffc"