text:
---
---

@inproceedings{DBLP:conf/ecai/DumancicB16,
  author    = {Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {An Efficient and Expressive Similarity Measure for Relational Clustering
               Using Neighbourhood Trees},
  booktitle = {{ECAI}},
  series    = {Frontiers in Artificial Intelligence and Applications},
  volume    = {285},
  pages     = {1674--1675},
  publisher = {{IOS} Press},
  pdf = {2016/pubs/2016_DumancicBlockeel_ECAI.pdf}
}

@inproceedings{DBLP:conf/ilp/DumancicB17,
  author    = {Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {Demystifying Relational Latent Representations},
  booktitle = {{ILP}},
  series    = {Lecture Notes in Computer Science},
  volume    = {10759},
  pages     = {63--77},
  publisher = {Springer},
  year      = {2017},
  pdf = {2017/pubs/2017_DumancicBlockeel_ILP.pdf},
  poster = {2017/posters/2017_DumancicBlockeel_ILP.pdf},
  slides = {2017/slides/2017_DumancicBlockeel_ILP.pdf},
  code = {https://dtai.cs.kuleuven.be/software/curled}
}

@inproceedings{DBLP:conf/ijcai/DumancicB17,
  author    = {Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {Clustering-Based Relational Unsupervised Representation Learning with
               an Explicit Distributed Representation},
  booktitle = {{IJCAI}},
  pages     = {1631--1637},
  publisher = {ijcai.org},
  year      = {2017},
  pdf = {2017/pubs/2017_DumancicBlockeel_IJCAI.pdf},
  poster = {2017/posters/2017_DumancicBlockeel_IJCAI.pdf},
  slides = {2017/slides/2017_DumancicBlockeel_IJCAI.pdf},
  code = {https://dtai.cs.kuleuven.be/software/curled}
}

@inproceedings{DBLP:conf/ijcai/CraenendonckDB17,
  author    = {Toon {van Craenendonck} and
               Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {{COBRA:} {A} Fast and Simple Method for Active Clustering with Pairwise
               Constraints},
  booktitle = {{IJCAI}},
  pages     = {2871--2877},
  publisher = {ijcai.org},
  year      = {2017},
  pdf = {2017/pubs/2017_VanCraenendonckDumancicBlockeel_IJCAI.pdf},
  code = {https://dtai.cs.kuleuven.be/software/cobras/}
}

@article{DBLP:journals/ml/DumancicB17,
  author    = {Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {An expressive dissimilarity measure for relational clustering using
               neighbourhood trees},
  journal   = {Machine Learning},
  volume    = {106},
  number    = {9-10},
  pages     = {1523--1545},
  year      = {2017},
  pdf = {2017/pubs/2017_DumancicBlockeel_MLJ.pdf},
  slides = {2017/slides/2017_DumancicBlockeel_MLJ.pdf},
  code = {https://dtai.cs.kuleuven.be/software/recent}
}

@inproceedings{DBLP:journals/corr/DumancicB16,
  author    = {Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {Unsupervised Relational Representation Learning via Clustering: Preliminary
               Results},
  booktitle   = {6th workshop on Statistical Relational Artificial Intelligence {StarAI} at {IJCAI}},
  year      = {2016},
  pdf = {2016/pubs/2016_DumancicBlockeel_StarAI.pdf}
}

@inproceedings{DBLP:journals/corr/DumancicMB16,
  author    = {Sebastijan Dumancic and
               Wannes Meert and
               Hendrik Blockeel},
  title     = {Theory reconstruction: a representation learning view on predicate
               invention},
  booktitle   = {6th workshop on Statistical Relational Artificial Intelligence {StarAI} at {IJCAI}},
  year      = {2016},
  pdf = {2016/pubs/2016_DumancicMeertBlockeel_StarAI.pdf}
}

@inproceedings{DBLP:journals/corr/abs-1806-11391,
  author    = {Sebastijan Dumancic and
               Alberto Garc{\'{\i}}a{-}Dur{\'{a}}n and
               Mathias Niepert},
  title     = {On embeddings as an alternative paradigm for relational learning},
  booktitle   = {8th workshop on Statistical Relational Artificial Intelligence {StarAI} at {IJCAI/ICML}},
  year      = {2018},
  pdf = {2018/pubs/2018_DumancicDuranNiepert_StarAI.pdf},
  poster = {2018/posters/2018_DumancicDuranNiepert_StarAI.pdf}
}

@inproceedings{DBLP:journals/corr/alps,
  author    = {Sebastijan Dumancic and
	       Tias Guns and
               Wannes Meert and
               Hendrik Blockeel},
  title     = {Auto-encoding Logic Programs},
  booktitle   = {2nd workshop on Neural Abstract Machines and Program Induction {NAMPI}  at {ICML}},
  year      = {2018},
  pdf = {2018/pubs/2018_DumancicGunsMeertBlockeel_NAMPI.pdf},
  poster = {2018/posters/2018_DumancicGunsMeertBlockeel_NAMPI.pdf}
}

@inproceedings{DBLP:journals/corr/abs-1803-11060,
  author    = {Toon {van Craenendonck} and
               Sebastijan Dumancic and
               Elia Van Wolputte and
               Hendrik Blockeel},
  title     = {{COBRAS:} Fast, Iterative, Active Clustering with Pairwise Constraints},
  booktitle   = {Symposium on Intelligent Data Analysis {(IDA)} 2018},
  year      = {2018},
  pdf = {2018/pubs/2018_VanCraenendonckDumancicVanWolputteBlockeel_IDA.pdf},
  code = {https://dtai.cs.kuleuven.be/software/cobras/}
}

@inproceedings{DBLP:journals/corr/abs-1805-00779,
  author    = {Toon {van Craenendonck} and
               Wannes Meert and
               Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {{COBRAS-TS:} {A} new approach to Semi-Supervised Clustering of Time
               Series},
  booktitle   = {Discovery Science},
  year      = {2018},
  pdf = {2018/pubs/2018_VanCraenendonckMeertDumancicBlockeel_DS.pdf},
  code = {https://dtai.cs.kuleuven.be/software/cobras/}
}

@inproceedings{DBLP:journals/corr/abs-1805-10872,
  author    = {Robin Manhaeve and
               Sebastijan Dumancic and
               Angelika Kimmig and
               Thomas Demeester and
               Luc {De Raedt}},
  title     = {DeepProbLog: Neural Probabilistic Logic Programming},
  booktitle   = {Advances in Neural Information Processing Systems {(NIPS)}},
  year      = {2018},
  pdf = {2018/pubs/2018_ManhaeveDumancicKimmigDemeesterDeRaedt_NIPS}
}

@inproceedings{emnlp18,
  author    = {Alberto Garc{\'{\i}}a{-}Dur{\'{a}}n and
               Sebastijan Dumancic and
               Mathias Niepert},
  title     = {Learning Sequence Encoders for Temporal Knowledge Graph Completion},
  booktitle   = {Empirical Methods in Natural Language Processing},
  year      = {2018},
  pdf = {2018/pubs/2018_DuranDumancicNiepert_EMNLP.pdf}
}

@inproceedings{ijcai19a,
  author	 = {Sebastijan Dumancic and
  		    Tias Guns and
  		    Wannes Meert and
  		    Hendrik Blockeel},
  title 	 = {Learning Relational Representations with Auto-encoding Logic Programs},
  booktitle	 = {International Joint Conference on Artificial Intelligence},
  year 		 = {2019},
  pdf = {2019/pubs/IJCAI19_DumancicGunsMeertBlockeel.pdf}
}

@inproceedings{ijcai19b,
  author 	= {Sebastijan Dumancic and
  		   Alberto Garc{\'{\i}}a{-}Dur{\'{a}}n and
  		   Mathias Niepert},
  title 	= {A comparative study of distributional and symbolic paradigms for relational learning},
  booktitle      = {International Joint Conference on Artificial Intelligence},
  year           = {2019},
  pdf 		= {2019/pubs/IJCAI19_DumancicGarciaDuranNiepert.pdf}
}

@inproceedings{ijcai20a,
  author 	= {Andrew Cropper and Sebastijan Dumancic},
  title 	= {Learning Large Logic Programs by Going Beyond Entailment},
  booktitle 	= {International Joint Conference on Artificial Intelligence},
  year 		= {2020},
  pdf 		= {2020/pubs/IJCAI20_CropperDumancic.pdf}
}

@inproceedings{ijcai20b,
  author        = {Andrew Cropper and Sebastijan Dumancic},
  title         = {Turning 30: New Ideas in Inductive Logic Programming},
  booktitle     = {International Joint Conference on Artificial Intelligence},
  year          = {2020},
  pdf           = {2020/pubs/IJCAI20_survey_CropperDumancic.pdf}
}

@inproceedings{ijcai20c,
  author        = {Luc {De Raedt} and Sebastijan Dumancic and Robin Manhaeve and Giuseppe Marra},
  title         = {From Statistical Relational to Neural-Symbolic Artificial Intelligence},
  booktitle     = {International Joint Conference on Artificial Intelligence},
  year          = {2020},
  pdf           = {2020/pubs/IJCAI20_DeRaedtEtAl.pdf}
}

@inproceedings{ecml20,
  author 	= {Jonas Soenen and Sebastijan Dumancic and Hendrik Blockeel},
  title		= {Tackling Noise in Semi-Supervised Clustering},
  booktitle 	= {European Conference on Machine Learning and Principles of Knowledge Discovery in Databases (ECML)},
  year 		= {2020},
  pdf 		= {2020/pubs/ECML20_Soenen.pdf}
}

@inproceedings{iaai21,
  author        = {Sebastijan Dumancic and Wannes Meert and Stijn Goethals and Tim Stuyckens and Jelle Huygen and Koen Denies},
  title         = {Automated Reasoning and Learning for Automated Payroll Management},
  booktitle     = {Innovative Applications of Artificial Intelligence (IAAI)},
  year          = {2021},
  pdf 		= {2021/pubs/IAAI21_DumancicMeertTeal.pdf}
}

@inproceedings{aaai21,
  author	= {Sebastijan Dumancic and Tias Guns and Andrew Cropper},
  title		= {Knowledge Refactoring for Inductive Program Synthesis},
  booktitle 	= {AAAI Conference on Artificial Intelligence (AAAI)},
  year 		= {2021},
  pdf 		= {2021/pubs/AAAI21_DumancicGunsCropper.pdf}
}

@inproceedings{DBLP:conf/ida/VerbruggenWDR21,
  author    = {Gust Verbruggen and
               Elia Van Wolputte and
               Sebastijan Dumancic and
               Luc De Raedt},
  title     = {Avatar - Automated Feature Wrangling for Machine Learning},
  booktitle = {Advances in Intelligent Data Analysis {XIX} - 19th International Symposium
               on Intelligent Data Analysis, {IDA} 2021},
  series    = {Lecture Notes in Computer Science},
  pages     = {235--247},
  year      = {2021},
  pdf 	    = {2021/pubs/IDA21_VerbruggenEtAl.pdf}
}

@article{deepproblog_aij,
title = {Neural probabilistic logic programming in DeepProbLog},
journal = {Artificial Intelligence},
volume = {298},
pages = {103504},
year = {2021},
issn = {0004-3702},
doi = {https://doi.org/10.1016/j.artint.2021.103504},
url = {https://www.sciencedirect.com/science/article/pii/S0004370221000552},
author = {Robin Manhaeve and Sebastijan Dumančić and Angelika Kimmig and Thomas Demeester and Luc {De Raedt}},
link = {https://www.sciencedirect.com/science/article/pii/S0004370221000552}
}

@article{ilp30:mlj,
title = {Inductive logic programming at 30},
journal = {Machine Learning},
year = {2021},
doi = {https://doi.org/10.1007/s10994-021-06089-1},
author = {Andrew Cropper and Sebastijan Dumančić and Richard Evans and Stephen Muggleton},
link = {https://link.springer.com/article/10.1007/s10994-021-06089-1}
}

@article{DBLP:journals/jair/CropperD22,
  author    = {Andrew Cropper and
               Sebastijan Dumancic},
  title     = {Inductive Logic Programming At 30: {A} New Introduction},
  journal   = {J. Artif. Intell. Res.},
  volume    = {74},
  pages     = {765--850},
  year      = {2022},
  link = {https://arxiv.org/abs/2008.07912}
}

@article{DBLP:journals/corr/abs-2112-00552,
  author    = {Kshitij Goyal and
               Sebastijan Dumancic and
               Hendrik Blockeel},
  title     = {SaDe: Learning Models that Provably Satisfy Domain Constraints},
  journal   = {ECMLPKDD},
  year      = {2022},
  link = {https://arxiv.org/abs/2112.00552}
}


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license: MIT

repository: Edroor/libmsci

license_type: permissive

repo_name: Edroor/libmsci

branch_name: refs/heads/master

extension: bib


text:
@article{Williams-2020-An,
    title = "An ice jam flood hazard assessment of a lowland river and its terminus inland delta",
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    pages = "2799--2817",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

branch_name: refs/heads/main

gha_language: Python


text:
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  journal   = {CoRR},
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}
@comment{
  eprint    = {2010.11125},
  archivePrefix = {arXiv},
  primaryClass = {cs.CL}
}

@article{zhang2020improving,
  author    = {Zhang, Biao and Williams, Philip and Titov, Ivan and Sennrich, Rico},
  title     = {``{I}mproving {M}assively {M}ultilingual {N}eural {M}achine {T}ranslation and {Z}ero-{S}hot {T}ranslation''},
  year      = {2020},
  url       = {https://arxiv.org/abs/2004.11867},
  journal   = {arXiv},
}
@comment{
  eprint    = {2004.11867},
  archivePrefix = {arXiv},
  primaryClass = {cs.CL}
}

@article{sennrich2015backtrans,
  author    = {Sennrich, Rico and Haddow, Barry and Birch, Alexandra},
  title     = {``{I}mproving {N}eural {M}achine {T}ranslation {M}odels with {M}onolingual {D}ata''},
  year      = {2015},
  url       = {http://arxiv.org/abs/1511.06709},
  journal   = {arXiv},
}
@comment{
  journal   = {CoRR},
  volume    = {abs/1511.06709},
  archivePrefix = {arXiv},
  eprint    = {1511.06709},
  timestamp = {Mon, 13 Aug 2018 16:47:05 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/SennrichHB15a.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@article{koehnknowles2017,
  author    = {Koehn, Philipp and Knowles, Rebecca},
  title     = {``{S}ix {C}hallenges for {N}eural {M}achine {T}ranslation''},
  year      = {2017},
  url       = {http://arxiv.org/abs/1706.03872},
  journal   = {arXiv},
}
@comment{
  journal   = {CoRR},
  volume    = {abs/1706.03872},
  archivePrefix = {arXiv},
  eprint    = {1706.03872},
  timestamp = {Mon, 13 Aug 2018 16:46:17 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/KoehnK17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@book{bonner2001,
  title     = {Introduction to Sicilian Grammar},
  author    = {Bonner, J. K.},
  year      = {2001},
  publisher = {Legas},
  address   = {Brooklyn, NY}
}

@book{cipolla2013,
  title     = {Learn Sicilian, Mparamu lu sicilianu},
  author    = {Cipolla, Gaetano},
  year      = {2013},
  publisher = {Legas},
  address   = {Mineola, NY}
}

@article{tiedemann2012,
  title     = {``{P}arallel {D}ata, {T}ools and {I}nterfaces in {OPUS}''},
  author    = {Tiedemann, Jorg},
  year      = {2012},
  url       = {https://opus.nlpl.eu/},
  journal   = {Proceedings of the 8th International Conference on Language Resources and Evaluation}
}


text:
#
# base recipe: meta/recipes-devtools/gdb/gdb-cross-canadian.inc
# base branch: daisy
#

require gdb-common.inc

inherit cross-canadian
inherit python-dir

SUMMARY = "GNU debugger (cross-canadian gdb for ${TARGET_ARCH} target)"
PN = "gdb-cross-canadian-${TRANSLATED_TARGET_ARCH}"
DPN = "gdb"
PR = "${INC_PR}.0"

DEPENDS = "nativesdk-ncurses nativesdk-expat nativesdk-gettext nativesdk-readline nativesdk-python"
RDEPENDS_${PN} += "nativesdk-python-core nativesdk-python-lang nativesdk-python-re \
                   nativesdk-python-codecs nativesdk-python-netclient"

GDBPROPREFIX = "--program-prefix='${TARGET_PREFIX}'"

EXTRA_OECONF_append = "--with-python=${WORKDIR}/python"

do_configure_prepend() {
cat > ${WORKDIR}/python << EOF
#! /bin/sh
case "\$2" in
        --includes) echo "-I${STAGING_INCDIR}/${PYTHON_DIR}/" ;;
        --ldflags) echo "-Wl,-rpath-link,${STAGING_LIBDIR}/.. -Wl,-rpath,${libdir}/.. -lpthread -ldl -lutil -lm -lpython${PYTHON_BASEVERSION}" ;;
        --exec-prefix) echo "${exec_prefix}" ;;
        *) exit 1 ;;
esac
exit 0
EOF
        chmod +x ${WORKDIR}/python
}

# we don't want gdb to provide bfd/iberty/opcodes, which instead will override the
# right bits installed by binutils.
do_install_append() {
	rm -rf ${D}${exec_prefix}/lib
	cross_canadian_bindirlinks
}

repository: nghiaht-tsdv/meta-debian

repo_name: nghiaht-tsdv/meta-debian

branch_name: refs/heads/jethro

gha_language: BitBake

extension: bb


text:
@InProceedings{las14cloudmeshmultiple,
  title =	 {{Accessing Multiple Clouds with Cloudmesh}},
  author =	 {von Laszewski, Gregor and Wang, Fugang and Lee,
                  Hyungro and Chen, Heng and Fox, Geoffrey C.},
  booktitle =	 {Proceedings of the 2014 ACM International Workshop
                  on Software-defined Ecosystems},
  year =	 2014,
  address =	 {New York, NY, USA},
  pages =	 {21--28},
  publisher =	 {ACM},
  series =	 {BigSystem '14},
  acmid =	 2609638,
  doi =		 {10.1145/2609441.2609638},
  isbn =	 {978-1-4503-2909-5},
  keywords =	 {cloud computing},
  location =	 {Vancouver, BC, Canada},
  numpages =	 8,
  url =		 {http://doi.acm.org/10.1145/2609441.2609638}
}

@misc{www-i524,
  author =	 {{Gregor von Laszewski and Badi Abdul-Wahid}},
  title =	 {{Big Data Classes}},
  url =		 {https://cloudmesh.github.io/classes/},
  howpublished = {Web Page},
  address =	 {Indiana University},
  year =	 2017,
  month =	 jan
}

@Misc {www-underscore,
  key =		 {google},
  howpublished = {Web Page},
  url =		 {http://www.google.com/some_underscore}
}

@Misc{www-spark,
  title= {Apache Spark},
  howpublished= {webpage},
  url= {http://spark.apache.org/},
  owner={S17-IR-2016}
}

@Misc{www-mllib,
  title= {Apache Spark's MLlib},
  howpublished= {webpage},
  url= {http://spark.apache.org/mllib/},
  owner={S17-IR-2016}
}

@Misc{www-hadoop,
  title= {Apache Hadoop},
  howpublished= {webpage},
  url= {http://hadoop.apache.org/},
  owner={S17-IR-2016}
}

@Misc{www-mahout,
  title= {Apache Mahout},
  howpublished= {webpage},
  url= {http://mahout.apache.org/},
  owner={S17-IR-2016}
}

@Misc{www-storm,
  title= {Storm},
  howpublished= {webpage},
  url= {http://storm.apache.org},
  owner={S17-IR-2016}
}

@Misc{www-mapreduce,
  title= {Hadoop MapReduce},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/MapReduce},
  owner={S17-IR-2016}
}

@Misc{www-mlbase-paper,
  title= {MLBase project paper},
  howpublished= {webpage},
  url= {http://cidrdb.org/cidr2013/Papers/CIDR13_Paper118.pdf},
  owner={S17-IR-2016}
}

@Misc{www-pca,
  title= {Principal Component Analysis},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/Principal_component_analysis},
  owner={S17-IR-2016}
}

@Misc{www-naivebayes,
  title= {Naive Bayes},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/Naive_Bayes_classifier},
  owner={S17-IR-2016}
}

@Misc{www-decisiontrees,
  title= {Decision Trees},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/Decision_tree},
  owner={S17-IR-2016}
}

@Misc{www-kmeansproblem,
  title= {K-Means Problem},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/K-means_clustering},
  owner={S17-IR-2016}
}

@Misc{www-linearleastsquares,
  title= {Linear Least Squares},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/Linear_least_squares_(mathematics)},
  owner={S17-IR-2016}
}

@Misc{www-logisticregression,
  title= {Logistic Regression},
  howpublished= {webpage},
  url= {http://www.statisticssolutions.com/what-is-logistic-regression/},
  owner={S17-IR-2016}
}

@Misc{www-lasso,
  title= {Lasso Statistics},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/Lasso_(statistics)},
  owner={S17-IR-2016}
}

@Misc{www-scikitlearn,
  title= {python scikit-learn},
  howpublished= {webpage},
  url= {http://scikit-learn.org/stable/},
  owner={S17-IR-2016}
}

@Misc{www-H2O,
  title= {H2O},
  howpublished= {webpage},
  url= {https://en.wikipedia.org/wiki/H2O_(software)},
  owner={S17-IR-2016}
}

@Misc{www-xgboost,
  title= {xgboost},
  howpublished= {webpage},
  url= {https://xgboost.readthedocs.io/},
  owner={S17-IR-2016}
}

@Misc{MovieRecommender,
  title        = {Movie Recommender using MLlib},
  howpublished = {webpage},
  url          = {http://ampcamp.berkeley.edu/big-data-mini-course/movie-recommendation-with-mllib.html},
  owner        = {S17-IR-2016},
}

@Misc{www-churnprediction,
  title= {Churn Prediction},
  howpublished= {webpage},
  url= {https://docs.microsoft.com/en-us/azure/machine-learning/machine-learning-azure-ml-customer-churn-scenario},
  owner={S17-IR-2016}
}

@Misc{TelcoChurn,
  title        = {Prediction of Telco Churn },
  howpublished = {webpage},
  url          = {https://blog.cloudera.com/blog/2016/02/how-to-predict-telco-churn-with-apache-spark-mllib/ },
  owner        = {S17-IR-2016},
}

@Misc{www-mllib-guide,
  title = {Guide for MLlib },
  howpublished = {webpage},
  url = {https://spark.apache.org/docs/latest/ml-guide.html},
  owner = {S17-IR-2016}
}

@Misc{Analysis-webpage,
  title = {Analysis of various machine learning packages },
  howpublished = {webpage},
  url = { https://github.com/szilard/benchm-ml },
  owner = {S17-IR-2016}
}

@article{MLlib-article,
  author    = {Xiangrui Meng and Joseph K. Bradley and Burak Yavuz and
                  Evan R. Sparks and Shivaram Venkataraman and Davies
                  Liu and Jeremy Freeman and D. B. Tsai and Manish
                  Amde and Sean Owen and Doris Xin and Reynold Xin and
                  Michael J. Franklin and Reza Zadeh and Matei Zaharia
                  and Ameet Talwalkar},
  title     = {MLlib: Machine Learning in Apache Spark},
  journal   = {CoRR},
  volume    = {abs/1505.06807},
  year      = {2015},
  url       = {http://arxiv.org/abs/1505.06807},
  timestamp = {Mon, 01 Jun 2015 14:13:54 +0200},
  biburl    ={ http://dblp.uni-trier.de/rec/bib/journals/corr/MengBYSVLFTAOXX15},
  bibsource = {dblp computer science bibliography, http://dblp.org},
  owner = {S17-IR-2016}
}

@inproceedings{paper-MLBase,
  author    = {Tim Kraska and Ameet Talwalkar and John Duchi and Rean
                  Griffith and and Michael J. Franklin and Michael
                  Jordan},
  title     = {MLbase: A Distributed Machine-learning System},
  year      = {2013},
  booktitle = {6th Biennial Conference on Innovative Data Systems Research(CIDR’13)},
  address = {Asilomer, CA, USA},
  url       = {http://cidrdb.org/cidr2013/Papers/CIDR13_Paper118.pdf},
  owner = {S17-IR-2016}
}

gha_language: TeX


text:
DESCRIPTION = "Freeciv is a free turn-based multiplayer strategy game, in which each player becomes the leader of a civilization, fighting to obtain the ultimate goal: To become the greatest civilization."
SECTION = "x11/games"
LICENSE = "GPL"
DEPENDS = "gtk+ cairo esound zlib readline"
PR = "r2"

SRC_URI = "${SOURCEFORGE_MIRROR}/${PN}/${P}.tar.gz"

inherit autotools pkgconfig

SRC_URI[md5sum] = "7d597d59236cc0cc1cfaa0cbbda24bd4"
SRC_URI[sha256sum] = "784b6eb132d37c51f7d9cd50a92138f4520146715f64b8fd64c410b5997f77de"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD


text:
@article{RN1115,
 author = {Peel, T. N. and Dowsey, M. M. and Buising, K. L. and Cheng, A. C. and Choong, P. F. M.},
 doi = {10.1016/j.cmi.2019.06.016},
 issn = {1469-0691 (Electronic)
1198-743X (Linking)},
 journal = {Clin Microbiol Infect},
 title = {Chlorhexidine-alcohol versus iodine-alcohol for surgical site skin preparation in elective arthroplasty (ACAISA) study: cluster randomised controlled trial},
 type = {Journal Article},
 url = {https://www.ncbi.nlm.nih.gov/pubmed/31238121},
 year = {2019}
}


text:
.navbar-inverse{
	background-color:black;
}
.navbar-inverse
.navbar-nav>li>a{
	color:yellow;
}
.navbar-inverse
.navbar-nav>li>a:hover{
	opacity:0.9;
	border-bottom:5px solid #fff000;
	color:yellow;
}
#imgleft1{
	width:250px;
}
#content1{
	margin-top:90px;

	font-size:14.6px;
}
#imgright1{
	width:250px;

}
#content2{
	margin-top:80px;
	font-size:14.6px;
}
#imgleft2{
	width:250px;
}
#content3{
	margin-top:100px;
	font-size:14.6px;
}
#imgright2{
	width:250px;
	margin-top:-10px;
}
#content4{
	margin-top:50px;
	font-size:14.6px;
}

footer{
	background-color:black;
	padding:15px;
	color:white;
	text-align:center;
	margin-top:20px;
}

repository: shlok-gandhi/Batman-Website

repo_name: shlok-gandhi/Batman-Website

extension: css


text:
% This article is the paper on TaylorSeries.jl
@article{TaylorSeries.jl-2019,
  title = {{TaylorSeries}.jl: Taylor expansions in one and several variables in Julia},
  author = {Luis Benet and David P. Sanders},
  journal = {Journal of Open Source Software}
  doi = {10.21105/joss.01043},
  url = {https://doi.org/10.21105/joss.01043},
  year = {2019},
  month = apr,
  publisher = {The Open Journal},
  volume = {4},
  number = {36},
  pages = {1043},
}

% This is Zenodo's bibtex entry
@misc{TaylorSeries.jl-zenodo,
  author       = {Luis Benet and David P. Sanders},
  title        = {JuliaDiff/TaylorSeries.jl},
  month        = apr,
  year         = 2019,
  doi          = {10.5281/zenodo.2628898},
  url          = {https://doi.org/10.5281/zenodo.2628898}
}

gha_license_id: NOASSERTION


text:
SUMMARY = "Miscellaneous files for ISOBlue2"
HOMEPAGE = "http://https://github.com/OATS-Group/isoblue2/"
LICENSE = "CLOSED"
LIC_FILES_CHKSUM = ""
RDEPENDS_${PN} += "bash"

SRC_URI = " \
    file://pgns \
    file://id \
"

do_install () {
    # install the directory
    install -d ${D}/opt

    # copy the machine-id to file
    echo ${MACHINEID} > ${WORKDIR}/id

    # install the files
    install -m 0644 ${WORKDIR}/id ${D}/opt/id
    install -m 0644 ${WORKDIR}/pgns ${D}/opt/pgns
}

FILES_${PN} += " \
    /opt/id \
    /opt/pgns \
"

repository: ISOBlue/meta-isoblue

repo_name: ISOBlue/meta-isoblue


text:
@InProceedings{mezuman12,
  title = {Globally Optimizing Graph Partitioning Problems Using Message Passing},
  author = {Elad Mezuman and Yair Weiss},
  pages = {770--778},
  abstract = {Graph partitioning algorithms play a central role in data analysis and machine learning. Most useful graph partitioning criteria correspond to optimizing a ratio between the cut and the size of the partitions, this ratio leads to an NP-hard problem that is only solved approximately. This makes it difficult to know whether failures of the algorithm are due to failures of the optimization or to the criterion being optimized. In this paper we present a framework that seeks and finds the optimal solution of several NP-hard graph partitioning problems. We use a classical approach to ratio problems where we repeatedly ask whether the optimal solution is greater than or less than some constant - lambda. Our main insight is the equivalence between this ``lambda  question'' and performing inference in a graphical model with many local potentials and one high-order potential. We show that this specific form of the high-order potential is amenable to message-passing algorithms and how to obtain a bound on the optimal solution from the messages. Our experiments show that in many cases our approach yields the global optimum and improves the popular spectral solution.},
  pdf = {http://jmlr.org/proceedings/papers/v22/mezuman12/mezuman12.pdf},
}

repository: mreid/papersite

repo_name: mreid/papersite

gha_license_id: MIT


text:
# Copyright (C) 2017 Clif Liu <clif@afero.io>

DESCRIPTION = "Afero Binaries Image"
LICENSE = "CLOSED"
SECTION = "Examples"
DEPENDS = "af-sec hubby otamgr af-edge"

IMAGE_INSTALL = "af-sec-dev hubby otamgr af-edge-dev"

inherit core-image

PACKAGE_CLASSES = "package_ipk package_tar"


text:
DEFAULT_PREFERENCE = "1"
PR = "r17"

require uclibc.inc

# This is the correct KERNEL_SOURCE location, if the uClibc
# fix_includes.sh script is run (see nokernelheader.patch below)
# this must be correct.
KERNEL_SOURCE = "${STAGING_DIR_HOST}/${exec_prefix}"
PROVIDES += "virtual/${TARGET_PREFIX}libc-for-gcc"

SRC_URI += "http://www.uclibc.org/downloads/uClibc-${PV}.tar.bz2"

S = "${WORKDIR}/uClibc-${PV}"

#*** PATCHES ***
#
# The nokernelheadercheck patch removes the check on the include
# files in ${KERNEL_SOURCE}, however this check seems to be
# functioning correct now so the patch is not included.  It may
# be necessary to add this for architectures which do not initially
# have a 'good' set of kernel header files in the cross directory.
#SRC_URI += "file://nokernelheadercheck.patch;patch=1"
#
# Thumb support
#
# Thumb interworking support
THUMBSTUFF = " \
              file://thumb-defined-arm-or-thumb.patch;patch=1 \
              file://thumb-mov-pc-bx.patch;patch=1 \
              file://thumb-swi-r7.patch;patch=1 \
              file://thumb-sysnum-h.patch;patch=1 \
              file://thumb-asm-swi.patch;patch=1 \
              file://thumb-call-via-rx.patch;patch=1 \
              file://dl-startup.h.patch;patch=1 \
              file://dl-string.h.patch;patch=1 \
              file://dl-sysdep.h.patch;patch=1 \
              file://uclibc-libgcc-eh.patch;patch=1 \
             "

SRC_URI_append_arm = " ${THUMBSTUFF} "

#
# This is a core change and is controversial, maybe even wrong
# on some architectures
THUMB_INTERWORK_RESOLVE_PATCH = ""
THUMB_INTERWORK_RESOLVE_PATCH_thumb-interwork = " file://thumb-resolve.patch;patch=1"
SRC_URI += " ${THUMB_INTERWORK_RESOLVE_PATCH}"

DEFAULT_PREFERENCE_avr32 = "6000"
SRC_URI_append_avr32 = " \
                        file://uclibc-makefile.patch;patch=1 \
                        file://remove-bogus-version-hack-and-just-use-asm-generic-if-it-exists.patch;patch=1 \
                        file://let-optimized-stringops-override-default-ones.patch;patch=1 \
                        file://fix-getrusage-argument-type.patch;patch=1 \
                        file://fix-__libc_fcntl64-varargs-prototype.patch;patch=1 \
                        file://fix-broken-__libc_open-declaration.patch;patch=1 \
                        file://avr32-arch-2.patch;patch=1 \
                        file://avr32-linkrelax-option.patch;patch=1 \
                        file://avr32-string-ops.patch;patch=1 \
                        file://no-create_module-on-avr32.patch;patch=1 \
                        file://ldso-always-inline-_dl_memcpy.patch;patch=1 \
                        file://ldso-define-MAP_FAILED.patch;patch=1 \
                        file://ldso-always-inline-syscalls.patch;patch=1 \
                        file://ldso-avr32-2.patch;patch=1 \
                        file://ldso-avr32-needs-CONSTANT_STRING_GOT_FIXUP.patch;patch=1 \
                        file://ldso-avr32-startup-hack.patch;patch=1 \
                        file://ldd-avr32-support.patch;patch=1 \
                        file://libpthread-avr32.patch;patch=1 \
                        file://sync-fcntl-h-with-linux-kernel.patch;patch=1 \
                       "

#file://uClibc-0.9.28-avr32-20060621.patch;patch=1 \
#file://uClibc-0.9.28-avr32-20061019.patch;patch=1 \
#file://uclibc-avr32-no-msoft-float.patch;patch=1 \


text:
body {
    font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;
}

.container {
    display: grid;
    grid-template-columns: 5% 30% 30% 30% 5%;
    grid-template-rows: 5% 5% 10% 40% auto;
    height: 100%;
}

.item-header {
    font-size: 24px;
    font-weight: bold;
    grid-column-start: 2;
    grid-column-end: 5;
    grid-row-start: 1;
    grid-row-end: 1;
    justify-self: center;
}

.item-sub-header {
    font-size: 20px;
    font-weight: bold;
    color: #ff0000;
    grid-column-start: 2;
    grid-column-end: 5;
    grid-row-start: 2;
    grid-row-end: 2;
    justify-self: center;
}

.small-frame {
    margin:10px;
    display: grid;
    font-size: 24px;
    border: 2px #6fa9ff solid;
    border-radius: 15px;
    text-align: center;
    align-items: center;
}

.item-a {
    grid-column-start: 2;
    grid-column-end: 2;
    grid-row-start: 3;
    grid-row-end: 3;
}

.item-b {
    grid-column-start: 3;
    grid-column-end: 3;
    grid-row-start: 3;
    grid-row-end: 3;
}

.item-c {
    grid-column-start: 4;
    grid-column-end: 4;
    grid-row-start: 3;
    grid-row-end: 3;
}

.item-d {
    border: 1px solid lightgray;
    grid-column-start: 2;
    grid-column-end: 2;
    grid-row-start: 4;
    grid-row-end: 4;
}

.item-e {
    border: 1px solid lightgray;
    grid-column-start: 3;
    grid-column-end: 3;
    grid-row-start: 4;
    grid-row-end: 4;
}

.item-f {
    border: 1px solid lightgray;
    grid-column-start: 4;
    grid-column-end: 4;
    grid-row-start: 4;
    grid-row-end: 4;
}

gha_language: JavaScript


text:
@article{AIM07,
    title = {Two algorithms for the Student-Project Allocation problem},
    year = {2007},
    author = {Abraham, David J. and Irving, Robert W. and Manlove, David F.},
    journal = {5},
    number = {1},
    pages = {73-90},
    doi = {10.1016/j.jda.2006.03.006},
}

@book{Aus13,
    title = {Pride and Prejudice},
    year = {1813},
    author = {Austen, Jane},
    publisher = {T. Egerton, Military Library},
    address = {Whitehall, London, UK},
}

@article{DF81,
    title = {Machiavelli and the {Gale-Shapley} Algorithm},
    year = {1981},
    author = {Dubins, Lester and Freedman, David},
    journal = {The American Mathematical Monthly},
    volume = {88},
    number = {7},
    pages = {485-494},
    doi = {10.2307/2321753}
}

@book{GI89,
    author = {Gusfield, Dan and Irving, Robert W.},
    title = {The Stable Marriage Problem: Structure and Algorithms},
    year = {1989},
    isbn = {0262071185},
    publisher = {MIT Press},
    address = {Cambridge, MA, USA},
}

@article{GS62,
    title = {College Admissions and the Stability of Marriage},
    author = {Gale, David and Shapley, Lloyd},
    year = {1962},
    journal = {The American Mathematical Monthly},
    volume = {69},
    number = {1},
    pages = {9-15},
    doi = {10.2307/2312726},
}

@article{Irv85,
    title = {An efficient algorithm for the "stable roommates" problem},
    author = {Irving, Robert W.},
    year = {1985},
    journal = {Journal of Algorithms},
    volume = {6},
    number = {4},
    pages = {577-595},
    doi = {10.1016/0196-6774(85)90033-1},
}

@article{KCH+16,
    title = {An Open Framework for the Reproducible Study of the Iterated
             Prisoner’s Dilemma},
    year = {2016},
    author = {Knight, Vincent and Campbell, Owen and Harper, Marc and Langner,
              Karol M. and Campbell, James and Campbell, Thomas and Carney, Alex
              and Chorley, Martin and Davidson-Pilon, Cameron and Glass,
              Kristian and Glynatsi, Nikoleta and Ehrlich, Tomáš and Jones,
              Martin and Koutsovoulos, Georgios and Tibble, Holly and Jochen,
              Müller and Palmer, Geraint and Petunov, Piotr and Slavin, Paul and
              Standen, Timothy and Visintini, Luis and Molden, Karl},
    journal = {Journal of Open Research Software},
    volume = {4},
    number = {1},
    doi = {10.5334/jors.125},
}

@misc{MMT14,
    title = {Gambit: Software Tools for Game Theory, Version 16.0.1},
    year = {2014},
    author = {McKelvey, Richard D. and McLennan, Andrew M. and Turocy, Theodore
              L.},
    url = {http://www.gambit-project.org},
}

@misc{KBRK19,
    title = {Nashpy: v0.0.19},
    year = {2019},
    author = {Knight, Vincent and Baldevia, Ria and Rivière, Philippe and
              Konovalov, Alexander},
    doi = {10.5281/zenodo.3256475},
}

@article{Rot84,
    title = {The Evolution of the Labor Market for Medical Interns and
             Residents: A Case Study in Game Theory},
    year = {1984},
    author = {Roth, Alvin},
    journal = {Journal of Political Economy},
    volume = {92},
    number = {6},
    pages = {991-1016},
    doi = {10.1086/261272},
}


text:
/** Inherits: StackPane */
.game-cell-play-placeholder {
    -fx-padding: 3;
    -fx-background-color: -skin-bgr-color;
    -fx-background-color: linear-gradient(to right, -skin-bgr-color 0%, ladder(rgba(0,55,255), -skin-bgr-color, transparent), -skin-bgr-color 100%);
    -fx-max-height: 4em;
}
.game-cell-play-placeholder > VBox {
    -fx-translate-y: -0.5em;
    -fx-spacing: -10;
}

/** Inherits: .icon */
.game-cell-play-placeholder .icon {}

/** Inherits: Text */
.game-cell-play-placeholder .label {
    -fx-font-weight: bold;
}

license: Unlicense

repository: sghpjuikit/player

repo_name: sghpjuikit/player

gha_language: Kotlin


text:
% Encoding: UTF-8

@Book{Adams1979,
  author    = {Adams, Douglas},
  publisher = {Pan Books},
  title     = {The Hitchhiker's Guide to the Galaxy},
  year      = {1979},
  isbn      = {0-330-25864-8},
}

repository: Lyonnard/CDTAP-Thesis-Template

repo_name: Lyonnard/CDTAP-Thesis-Template


text:
{
  'targets': [
    {
      'target_name': 'mraa',
      'sources': [
        @mraa_LIB_SRCS_GYP@
        'src/version.c',
        'src/mraajsJAVASCRIPT_wrap.cxx'
      ],
      'include_dirs': [
        @mraa_LIB_INCLUDE_DIRS_GYP@
      ],
      'variables': {
        "v8_version%": "<!(`command -v nodejs 2> /dev/null || echo node` -e 'console.log(process.versions.v8)' | sed 's/\.//g' | cut -c 1-5)",
        "arch%": "<!(`command -v nodejs 2> /dev/null || echo node` -e 'console.log(process.arch)')"
      },
      'cflags_cc!': [ '-fno-rtti', '-fno-exceptions' ],
      'cflags!': [ '-fno-exceptions' ],
      'conditions' : [
        ['OS=="android"', {
          'sources' : [ 'src/glob/glob.c' ],
          'include_dirs' : [ 'src/glob' ],
        }],
        [ 'arch=="x64" or arch=="ia32"', {
          'defines' : [ 'X86PLAT=ON' ],
        }],
        [ 'arch=="arm"', {
          'defines' : [ 'ARMPLAT=ON'],
        }],
      ],
      'defines' : [
        'SWIG',
        'SWIGJAVASCRIPT',
        'FIRMATA=ON',
        'ONEWIRE=ON',
        'BUILDING_NODE_EXTENSION=1',
        'SWIG_V8_VERSION=0x0<(v8_version)',
        'V8_VERSION=0x0<(v8_version)'
      ]
    }
  ]
}

repository: radxa/mraa

repo_name: radxa/mraa

gha_language: C

extension: cmake


text:
.header-wrapper{
    background-color: rgba(34, 49, 52, 0.9);
}

.title{
    color: white;
    float: left;
}

li{
    text-align: center;
    float: right;
    line-height: 60px;
    margin: 0 30px;
    font-size: 20px;
    color: white;
}

.header-wrapper a{
    color: white;
}

repository: ko-katsuren/tutorialLaravel

repo_name: ko-katsuren/tutorialLaravel


text:
# - Find PKCS11-Helper
# Find the native PKCS11-Helper includes and library
#
#  PKCS11H_INCLUDE_DIR - where to find pkcs11.h, etc.
#  PKCS11H_LIBRARIES   - List of libraries when using PKCS11-Helper.
#  PKCS11H_FOUND       - True if PKCS11-Helper found.

IF (PKCS11H_INCLUDE_DIR AND PKCS11H_LIBRARIES)
  # Already in cache, be silent
  SET(PKCS11H_FIND_QUIETLY TRUE)
ENDIF (PKCS11H_INCLUDE_DIR AND PKCS11H_LIBRARIES)

IF (NOT WIN32)
  FIND_PACKAGE(PkgConfig)
  PKG_CHECK_MODULES(PC_PKCSH11 libpkcs11-helper-1)
ENDIF (NOT WIN32)

FIND_PATH(PKCS11H_INCLUDE_DIR pkcs11.h
  HINTS
  ${PC_PKCSH11_INCLUDEDIR}
  ${PC_PKCSH11_INCLUDEDIR}/pkcs11-helper-1.0
  ${PC_PKCSH11_INCLUDE_DIRS}
  ${PC_PKCSH11_INCLUDE_DIRS}/pkcs11-helper-1.0
  )

FIND_LIBRARY(PKCS11H_LIBRARY NAMES pkcs11-helper libpkcs11-helper
  HINTS
  ${PC_PKCS11H_LIBDIR}
  ${PC_PKCS11H_LIBRARY_DIRS}
  )

# handle the QUIETLY and REQUIRED arguments and set PKCS11H_FOUND to TRUE if
# all listed variables are TRUE
INCLUDE(FindPackageHandleStandardArgs)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(PKCS11H DEFAULT_MSG PKCS11H_INCLUDE_DIR PKCS11H_LIBRARY)

IF(PKCS11H_FOUND)
  SET( PKCS11H_LIBRARIES ${PKCS11H_LIBRARY} )
ELSE(PKCS11H_FOUND)
  SET( PKCS11H_LIBRARIES )
ENDIF(PKCS11H_FOUND)

MARK_AS_ADVANCED( PKCS11H_LIBRARY PKCS11H_INCLUDE_DIR )

repository: tixsys/esteid

repo_name: tixsys/esteid


text:
Automatically generated by Mendeley Desktop 1.19.4
Any changes to this file will be lost if it is regenerated by Mendeley.

BibTeX export options can be customized via Preferences -> BibTeX in Mendeley Desktop

@article{Pardo2017,
abstract = {European and Spanish legislation set hourly limits for Nitro- gen Dioxide, NO2, that are enforced with traffic restrictions. In this context it is important to warn the citizens in advance, which can only be done if the NO2 levels are forecasted. In this paper we propose a deep learning based air quality forecasting system that uses air quality and meteorological data to produce NO2 forecasts up to 24 h with a root mean squared error, RMSE, of 10.54 µg/m3. We also compare our results with the model based system CALIOPE.},
author = {Pardo, Esteban and Malpica, Norberto},
doi = {10.1007/978-3-319-59773-7_24},
file = {:Users/sepmein/Qsync/Papers/Pardo, Malpica{\_}2017{\_}Air Quality Forecasting in Madrid Using Long Short-Term Memory Networks.pdf:pdf},
isbn = {978-3-319-59772-0},
issn = {14337851},
keywords = {air quality forecasting,long short-term memory},
pages = {232--239},
pmid = {15712312},
title = {{Air Quality Forecasting in Madrid Using Long Short-Term Memory Networks}},
url = {http://link.springer.com/10.1007/978-3-319-59773-7{\_}24},
volume = {10338},
year = {2017}
}

repository: sepmein/references

repo_name: sepmein/references


text:
@phdthesis{galbraith_predictable_2018,
 abstract = {This thesis concerns case-marking phenomena in Icelandic and Faroese. I argue that the best approach to case distinguishes the levels of abstract, morphosyntactic and morphological case, and permits mismatches between levels in some grammars (Linking Theory, Kiparsky 1997, 2001); these mismatches are best handled by an Optimality Theoretic output harmonisation on the mapping from argument structure to morphosyntax (Prince and Smolensky 1993 et seq.). Such a theory provides a cogent account of predicates with non-nominative subjects in Insular Scandinavian, which present an interesting puzzle: in Icelandic, dative-subject verbs occur with nominative objects that trigger number agreement, whereas in Faroese the object in such sentences is marked accusative and occurs with default third person singular agreement. To date this difference has been poorly understood, and calls for in-depth analysis. The central hypothesis explored in this thesis is that the patterns observed are not language-specific idiosyncrasies, but the outcome of constraint interactions of a typical kind: namely, a pressure to index a nominative argument in the clause by number agreement, and a pressure to express structural accusative case on the object. I argue that similar constraint conflicts are responsible for the loss of lexical case in phenomena such as nominative substitution and case non-preservation, and correctly predict the availability of the passive in dative-subject predicates. I include a substantial amount of new data from surveys conducted on the Faroe Islands and Iceland, which are consistent with my hypothesis, and shed new light on the case systems of these languages beyond simple monotransitives. Moreover, I propose a Competing Grammars Model of intra-linguistic variation (cf. Kroch 1989 et seq.), which finds empirical support in corpora, and offers a plausible framework for explaining the diachronic trajectory of these languages. Finally, the model of grammar proposed here is also cross-linguistically tractable, generating realistic typologies of case-related phenomena, and can easily be extended to other language families.},
 author = {Galbraith, Daniel},
 copyright = {All rights reserved},
 month = {August},
 school = {Stanford University},
 title = {The Predictable Case of Faroese},
 type = {PhD thesis},
 url = {https://purl.stanford.edu/ny726mr8080},
 year = {2018}
}

repository: danielgalbraith/academic-kickstart

repo_name: danielgalbraith/academic-kickstart


text:
@article{stacey2017,
  title={A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)},
  author={Stacey, R Greg and Skinnider, Michael A and Scott, Nichollas E and Foster, Leonard J},
  journal={BMC Bioinformatics},
  volume={18},
  number={1},
  pages={457},
  year={2017},
  publisher={BioMed Central}
}

@article{scott2015,
  title={Development of a computational framework for the analysis of protein correlation profiling and spatial proteomics experiments},
  author={Scott, Nichollas E and Brown, Lyda M and Kristensen, Anders R and Foster, Leonard J},
  journal={Journal of Proteomics},
  volume={118},
  pages={112--129},
  year={2015},
  publisher={Elsevier}
}

@article{kristensen2012,
  title={A high-throughput approach for measuring temporal changes in the interactome},
  author={Kristensen, Anders R and Gsponer, Joerg and Foster, Leonard J},
  journal={Nature Methods},
  volume={9},
  number={9},
  pages={907--909},
  year={2012},
  publisher={Nature Research}
}

@article{skinnider2018,
  title={Genomic data integration systematically biases interactome mapping},
  author={Skinnider, Michael A and Stacey, R Greg and Foster, Leonard J},
  journal={PLoS Computational Biology},
  volume={14},
  number={10},
  pages={e1006474},
  year={2018},
  publisher={Public Library of Science}
}

@article{scott2017,
  title={Interactome disassembly during apoptosis occurs independent of caspase cleavage},
  author={Scott, Nichollas E and Rogers, Lindsay D and Prudova, Anna and Brown, Nat F and Fortelny, Nikolaus and Overall, Christopher M and Foster, Leonard J},
  journal={Molecular Systems Biology},
  volume={13},
  number={1},
  pages={906},
  year={2017},
  publisher={EMBO Press}
}

@article{giurgiu2018,
  title={CORUM: the comprehensive resource of mammalian protein complexes—2019},
  author={Giurgiu, Madalina and Reinhard, Julian and Brauner, Barbara and Dunger-Kaltenbach, Irmtraud and Fobo, Gisela and Frishman, Goar and Montrone, Corinna and Ruepp, Andreas},
  journal={Nucleic Acids Research},
  year={2018}
}

@article{stacey2018,
  title={Context-specific interactions in literature-curated protein interaction databases},
  author={Stacey, R Greg and Skinnider, Michael A and Chik, Jenny HL and Foster, Leonard J},
  journal={BMC Genomics},
  volume={19},
  number={1},
  pages={758},
  year={2018},
  publisher={BioMed Central}
}

@article{meldal2018,
  title={Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes},
  author={Meldal, Birgit HM and Bye-A-Jee, Hema and Gajdo{\v{s}}, Luk{\'a}{\v{s}} and Hammerov{\'a}, Zuzana and Hor{\'a}{\v{c}}kov{\'a}, Aneta and Melicher, Filip and Perfetto, Livia and Pokorn{\`y}, Daniel and Lopez, Milagros Rodriguez and T{\"u}rkov{\'a}, Al{\v{z}}b{\v{e}}ta and others},
  journal={Nucleic Acids Research},
  year={2018}
}

@article{kristensen2012,
  title={A high-throughput approach for measuring temporal changes in the interactome},
  author={Kristensen, Anders R and Gsponer, Joerg and Foster, Leonard J},
  journal={Nature methods},
  volume={9},
  number={9},
  pages={907},
  year={2012},
  publisher={Nature Publishing Group}
}

@article{havugimana2012,
  title={A census of human soluble protein complexes},
  author={Havugimana, Pierre C and Hart, G Traver and Nepusz, Tam{\'a}s and Yang, Haixuan and Turinsky, Andrei L and Li, Zhihua and Wang, Peggy I and Boutz, Daniel R and Fong, Vincent and Phanse, Sadhna and others},
  journal={Cell},
  volume={150},
  number={5},
  pages={1068--1081},
  year={2012},
  publisher={Elsevier}
}

@article{skinnider2018atlas,
  title={An atlas of protein-protein interactions across mammalian tissues},
  author={Skinnider, Michael A and Scott, Nichollas E and Prudova, Anna and Stoynov, Nikolay and Stacey, R Greg and Gsponer, Joerg and Foster, Leonard J},
  journal={bioRxiv},
  pages={351247},
  year={2018},
  publisher={Cold Spring Harbor Laboratory}
}

@article{kirkwood2013,
  title={Characterisation of native protein complexes and protein isoform variation using size-fractionation based quantitative proteomics},
  author={Kirkwood, Kathryn J and Ahmad, Yasmeen and Larance, Mark and Lamond, Angus I},
  journal={Molecular \& Cellular Proteomics},
  pages={mcp--M113},
  year={2013},
  publisher={ASBMB}
}

@article{riniker2013,
  title={Heterogeneous classifier fusion for ligand-based virtual screening: or, how decision making by committee can be a good thing},
  author={Riniker, Sereina and Fechner, Nikolas and Landrum, Gregory A},
  journal={Journal of chemical information and modeling},
  volume={53},
  number={11},
  pages={2829--2836},
  year={2013},
  publisher={ACS Publications}
}

@article{tan2018,
  title={Thermal proximity coaggregation for system-wide profiling of protein complex dynamics in cells},
  author={Tan, Chris Soon Heng and Go, Ka Diam and Bisteau, Xavier and Dai, Lingyun and Yong, Chern Han and Prabhu, Nayana and Ozturk, Mert Burak and Lim, Yan Ting and Sreekumar, Lekshmy and Lengqvist, Johan and others},
  journal={Science},
  volume={359},
  number={6380},
  pages={1170--1177},
  year={2018},
  publisher={American Association for the Advancement of Science}
}

repository: fosterlab/PrInCE

repo_name: fosterlab/PrInCE


text:
SECTION = "devel/chicken"
DESCRIPTION = "Bindings for OpenBSD's pledge(2)"
LICENSE = "BSD"
LIC_FILES_CHKSUM = "file://pledge.meta;md5=97961af348ef4d286de1daaced4c1d31"
DEPENDS_append_class-cross = " chicken-egg-module-declarations-cross"
DEPENDS_append_class-crosssdk = " chicken-egg-module-declarations-crosssdk"
DEPENDS_append_class-nativesdk = " nativesdk-chicken-egg-module-declarations chicken-egg-module-declarations-crosssdk"
DEPENDS = " chicken-egg-module-declarations chicken-egg-module-declarations-cross"
RDEPENDS_${PN} = " chicken-egg-module-declarations"

SRC_URI = "http://code.call-cc.org/egg-tarballs/4/pledge/pledge-${PV}.tar.gz"

SRC_URI[md5sum] = "ce0d2a58be7c002c3474423edf905f88"
SRC_URI[sha256sum] = "092ebdaa2ac7602ecda68a55c17cb9610b09755dfddf4deedd679a1d68ddcd36"

S = "${WORKDIR}/pledge-${PV}"

inherit chicken_install

BBCLASSEXTEND = "cross crosssdk nativesdk"

repository: OSSystems/meta-chicken

repo_name: OSSystems/meta-chicken


text:
require qt5-git.inc
require ${PN}.inc

SRCREV = "1fb79c9f2b50294b989cf2bdd8bfaaf0a458e2a8"


text:
@conference{PAGutierrez2016ijcnn,
 author = {P. A. Gutiérrez and M. Pérez-Ortiz and J. Sánchez-Monedero and C. Hervás-Martínez},
 booktitle = {International Joint Conference on Neural Networks (IJCNN)},
 month = {Jul},
 owner = {javi},
 pages = {2174--2181},
 timestamp = {2016.07.27},
 title = {Representing ordinal input variables in the context of ordinal classification},
 year = {2016}
}

repository: javism/academic-kickstart

repo_name: javism/academic-kickstart


text:
DESCRIPTION = "A library to build launchers"
LICENSE = "GPLv3,LGPLv2.1,LGPLv3"

DEFAULT_PREFERENCE = "-1"

DEPENDS = "glib-2.0 wncksync libwnck virtual/libx11 gconf gnome-menus"

SRC_URI = "http://launchpad.net/liblauncher/0.3/0.3.6/+download/liblauncher-0.3.6.tar.gz;name=liblauncher \
           file://0001-liblauncher-udpate-0.3.6-to-0.3.8-which-the-ubuntu-f.patch \
"

SRC_URI[liblauncher.md5sum] = "ba3ea890473f69000d1c843cee471471"
SRC_URI[liblauncher.sha256sum] = "ec3223c6f46cf29d291ccd383527443ba725a0baca65e490307400af0ad30c04"

inherit autotools

S = "${WORKDIR}/${PN}-0.3.6"


text:
@Book{xie2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {http://yihui.name/knitr/},
}
@Manual{rcore2017,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2017},
  url = {https://www.R-project.org/},
}
@Manual{rstudio2017,
  title = {RStudio: Integrated Development Environment for R},
  author = {{RStudio Team}},
  organization = {RStudio, Inc.},
  address = {Boston, MA},
  year = {2016},
  url = {http://www.rstudio.com/},
}
@Book{xie2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://github.com/rstudio/bookdown},
}
@Article{hadley2014,
  title = {Tidy Data},
  author = {Hadley Wickham},
  year = {2014},
  journal = {Journal of Statistical Software},
  volume = {59},
  number = {10},
  pages = {1-23},
}
@Article{layered-grammar,
  author = {Hadley Wickham},
  doi = {10.1198/jcgs.2009.07098},
  journal = {Journal of Computational and Graphical Statistics},
  number = {1},
  pages = {3–28},
  selected = {TRUE},
  title = {A layered grammar of graphics},
  volume = {19},
  year = {2010},
  bdsk-url-1 = {http://dx.doi.org/10.1198/jcgs.2009.07098},
}
@book{wilkinson2005,
  author = {Wilkinson, Leland},
  title = {The Grammar of Graphics (Statistics and Computing)},
  year = {2005},
  isbn = {0387245448},
  publisher = {Springer-Verlag New York, Inc.},
  address = {Secaucus, NJ, USA},
}
@book{chang2013,
  author = {Chang, Winston},
  title = {R Graphics Cookbook},
  year = {2013},
  isbn = {1449316956, 9781449316952},
  publisher = {O'Reilly Media, Inc.},
}

repository: mczyzj/BeginnersGuideToGalaxy

repo_name: mczyzj/BeginnersGuideToGalaxy

gha_language: HTML