text:
@article{choi_biodistribution_2015,
	title = {Biodistribution of the {Multidentate} {Hydroxypyridinonate} {Ligand} [ 14 {C}]-3,4,3-{LI}(1,2-{HOPO}), a {Potent} {Actinide} {Decorporation} {Agent}},
	volume = {76},
	issn = {02724391},
	url = {http://doi.wiley.com/10.1002/ddr.21246},
	doi = {10.1002/ddr.21246},
	number = {3},
	journal = {Drug Development Research},
	author = {Choi, Taylor A. and Endsley, Aaron N. and Bunin, Deborah I. and Colas, Christophe and An, Dahlia D. and Morales-Rivera, Joel A. and Villalobos, Jonathan A. and Shinn, Walter M. and Dabbs, Jack E. and Chang, Polly Y. and Abergel, Rebecca J.},
	month = may,
	year = {2015},
	keywords = {2-HOPO), 3, 3-LI(1, 4, actinide decorporation, biodistribution, metabolite, pharmacokinetics},
	pages = {107--122},
	file = {Attachment:/Users/julian/Documents/Mendeley/Choi et al. - 2015 - Biodistribution of the Multidentate Hydroxypyridinonate Ligand 14 C-3,4,3-LI(1,2-HOPO), a Potent Actinide Decorpor.pdf:application/pdf}
}

@article{abergel_biomimetic_2010,
	title = {Biomimetic {Actinide} {Chelators}: {An} {Update} on the {Preclinical} {Development} of the {Orally} {Active} {Hydroxypyridonate} {Decorporation} {Agents} 3,4,3-{LI}(1,2-{HOPO}) and 5-{LIO}({Me}-3,2-{HOPO})},
	volume = {99},
	issn = {0017-9078},
	url = {http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:landingpage&an=00004032-201009000-00018},
	doi = {10.1097/HP.0b013e3181c21273},
	number = {3},
	journal = {Health Physics},
	author = {Abergel, Rebecca J. and Durbin, Patricia W. and Kullgren, Birgitta and Ebbe, Shirley N. and Xu, Jide and Chang, Polly Y. and Bunin, Deborah I. and Blakely, Eleanor A. and Bjornstad, Kathleen A. and Rosen, Chris J. and Shuh, David K. and Raymond, Kenneth N.},
	month = sep,
	year = {2010},
	keywords = {actinides, chelation, contamination, internal},
	pages = {401--407},
	annote = {NULL},
	file = {Attachment:/Users/julian/Documents/Mendeley/Abergel et al. - 2010 - Biomimetic Actinide Chelators An Update on the Preclinical Development of the Orally Active Hydroxypyridonate De.pdf:application/pdf}
}

@article{rees_evaluating_2018,
	title = {Evaluating the potential of chelation therapy to prevent and treat gadolinium deposition from {MRI} contrast agents},
	volume = {8},
	issn = {2045-2322},
	url = {http://www.nature.com/articles/s41598-018-22511-6},
	doi = {10.1038/s41598-018-22511-6},
	number = {1},
	journal = {Scientific Reports},
	author = {Rees, Julian A. and Deblonde, Gauthier J.-P. and An, Dahlia D. and Ansoborlo, Camille and Gauny, Stacey S. and Abergel, Rebecca J.},
	year = {2018},
	pages = {4419},
	file = {Attachment:/Users/julian/Documents/Mendeley/Rees et al. - 2018 - Evaluating the potential of chelation therapy to prevent and treat gadolinium deposition from MRI contrast agents.pdf:application/pdf}
}

@article{sturzbecher-hoehne_hydroxypyridinonate_2015,
	title = {Hydroxypyridinonate {Complex} {Stability} of {Group} ({IV}) {Metals} and {Tetravalent} f-{Block} {Elements}: {The} {Key} to the {Next} {Generation} of {Chelating} {Agents} for {Radiopharmaceuticals}},
	volume = {54},
	issn = {0020-1669},
	url = {http://pubs.acs.org/doi/abs/10.1021/acs.inorgchem.5b00033},
	doi = {10.1021/acs.inorgchem.5b00033},
	abstract = {The solution thermodynamics of the water-soluble complexes formed between 3,4,3-LI(1,2-HOPO) and Zr(IV) or Pu(IV) were investigated to establish the metal coordination properties of this octadentate chelating agent. Stability constants log β110 = 43.1 ± 0.6 and 43.5 ± 0.7 were determined for [Zr(IV)(3,4,3-LI(1,2-HOPO))] and [Pu(IV)(3,4,3-LI(1,2-HOPO))], respectively, by spectrophotometric competition titrations against Ce(IV). Such high thermodynamic stabilities not only confirm the unparalleled Pu(IV) affinity of 3,4,3-LI(1,2-HOPO) as a decorporation agent but also corroborate the great potential of hydroxypyridinonate ligands as new (89)Zr-chelating platforms for immuno-PET applications. These experimental values are in excellent agreement with previous estimates and are discussed with respect to ionic radius and electronic configuration, in comparison with those of Ce(IV) and Th(IV). Furthermore, a liquid chromatography assay combined with mass spectrometric detection was developed to probe the separation of the neutral [M(IV)(3,4,3-LI(1,2-HOPO))] complex species (M = Zr, Ce, Th, and Pu), providing additional insight into the coordination differences between group IV and tetravalent f-block metals and on the role of d and f orbitals in bonding interactions.},
	number = {7},
	journal = {Inorganic Chemistry},
	author = {Sturzbecher-Hoehne, Manuel and Choi, Taylor A. and Abergel, Rebecca J.},
	month = apr,
	year = {2015},
	pmid = {25799124},
	pages = {3462--3468},
	file = {Attachment:/Users/julian/Documents/Mendeley/Sturzbecher-Hoehne, Choi, Abergel - 2015 - Hydroxypyridinonate Complex Stability of Group (IV) Metals and Tetravalent f-Block Elements T.pdf:application/pdf}
}

@article{stradling_comparative_1993,
	title = {Comparative efficacies of 3,4,3-{LIHOPO} and {DTPA} for enhancing the excretion of plutonium and americium from the rat after simulated wound contamination as nitrates},
	volume = {64},
	issn = {09553002},
	doi = {10.1080/09553009314551191},
	abstract = {With DTPA as a comparison, the siderophore analogue 3,4,3-LIHOPO has been examined for its ability to remove 238Pu and 241Am from the rat after subcutaneous (s.c.) and intramuscular (i.m.) injection of about 200 Bq of each actinide (0.3 ng Pu, 1.6 ng Am). After the s.c. deposition of 238Pu and 241Am, both ligands were more effective after local administration than (in decreasing order) their repeated interperitoneal (i.p.) injection, single i.p. injection and continuous infusion. Dosages of 3 mumol kg-1 of 3,4,3-LIHOPO were at least as effective as 30 mumol kg-1 DTPA after each mode of administration. The most effective regimen of those investigated for s.c. 238Pu and 241Am involved local administration of 30 mumol kg-1 of 3,4,3-LIHOPO at 30 min followed by i.p. injections at 6 h, 1, 2 and 3 day. By day 7 after exposure, the amounts of 238Pu and 241Am retained in the body were 2 and 7\% of those in controls, respectively and 10 and four times less than when DTPA was administered using the same regimen. The ligand 3,4,3-LIHOPO was more effective for 238Pu and 241Am after their i.m. injection. This was attributed to the greater retention of these actinides at the wound site (97 versus 67\%) when treatment commenced. After a single local injection of 30 mumol kg-1 at 30 min, the amounts of 238Pu and 241Am retained in the body at 7 day were 0.9 and 0.8\% of controls. These values were 34 and 27 times less than after local and repeated i.p. injections of DTPA at dosages of 30 mumol kg-1. It is concluded that the administration of 3,4,3-LIHOPO represents potentially a most significant advance in the treatment of wound contamination by 238Pu and 241Am by chelating agents.},
	number = {1},
	journal = {International Journal of Radiation Biology},
	author = {Stradling, G. N. and Gray, S. A. and Moody, J. C. and Pearce, M. J. and Wilson, I. and Burgada, R. and Bailly, T. and Leroux, Y. and Raymond, K. N. and Durbin, P. W.},
	year = {1993},
	pmid = {8102166},
	pages = {133--140},
	file = {Attachment:/Users/julian/Documents/Mendeley/Stradling et al. - 1993 - Comparative efficacies of 3,4,3-LIHOPO and DTPA for enhancing the excretion of plutonium and americium from th.pdf:application/pdf}
}

@article{deblonde_toxic_2018,
	title = {Toxic heavy metal – {Pb}, {Cd}, {Sn} – complexation by the octadentate hydroxypyridinonate ligand archetype 3,4,3-{LI}(1,2-{HOPO})},
	volume = {42},
	issn = {1144-0546},
	url = {http://xlink.rsc.org/?DOI=C7NJ04559J},
	doi = {10.1039/C7NJ04559J},
	abstract = {The toxicity of heavy metals such as lead (Pb), cadmium (Cd) and tin (Sn) has long been known but accidental exposures of large populations to these elements remain unfortunately a topical issue.},
	number = {10},
	journal = {New Journal of Chemistry},
	author = {Deblonde, Gauthier J.P. and Lohrey, Trevor D. and An, Dahlia D. and Abergel, Rebecca J.},
	year = {2018},
	pages = {7649--7658},
	file = {Attachment:/Users/julian/Documents/Mendeley/Deblonde et al. - 2018 - Toxic heavy metal-Pb, Cd, Sn-complexation by the octadentate hydroxypyridinonate ligand archetype 3,4,3-LI(1,2-.pdf:application/pdf}
}

@article{deblonde_solution_2013,
	title = {Solution {Thermodynamic} {Stability} of {Complexes} {Formed} with the {Octadentate} {Hydroxypyridinonate} {Ligand} 3,4,3-{LI}(1,2-{HOPO}): {A} {Critical} {Feature} for {Efficient} {Chelation} of {Lanthanide}({IV}) and {Actinide}({IV}) {Ions}},
	volume = {52},
	issn = {0020-1669},
	url = {https://pubs.acs.org/sharingguidelines http://pubs.acs.org/doi/10.1021/ic4010246},
	doi = {10.1021/ic4010246},
	abstract = {The solution thermodynamics of water-soluble complexes formed between Ce(III), Ce(IV), Th(IV) and the octadentate chelating agent 3,4,3-LI(1,2-HOPO) were investigated. Several techniques including spectrofluorimetric and automated spectrophotometric titrations were used to overcome the slow spontaneous oxidation of Ce(III) complexes yielding to stability constants of log β 110 = 17.4 ± 0.5, log β 11−1 = 8.3 ± 0.4 and log β 111 = 21.2 ± 0.},
	number = {15},
	journal = {Inorganic Chemistry},
	author = {Deblonde, Gauthier J-P. and Sturzbecher-Hoehne, Manuel and Abergel, Rebecca J},
	month = aug,
	year = {2013},
	pages = {8805--8811},
	file = {Attachment:/Users/julian/Documents/Mendeley/J-P Deblonde, Sturzbecher-Hoehne, Abergel - 2013 - Solution Thermodynamic Stability of Complexes Formed with the Octadentate Hydroxypyri.pdf:application/pdf}
}

@article{sturzbecher-hoehne_343-li12-hopo:_2011,
	title = {3,4,3-{LI}(1,2-{HOPO}): {In} vitro formation of highly stable lanthanide complexes translates into efficacious in vivo europium decorporation},
	volume = {40},
	issn = {1477-9226},
	url = {http://xlink.rsc.org/?DOI=c1dt10840a},
	doi = {10.1039/c1dt10840a},
	abstract = {The spermine-based hydroxypyridonate octadentate chelator 3,4,3-LI(1,2-HOPO) was investigated for its ability to act as an antenna that sensitizes the emission of Sm(III), Eu(III), and Tb(III) in the Visible range (Φ(tot) = 0.2-7\%) and the emission of Pr(III), Nd(III), Sm(III), and Yb(III) in the Near Infra-Red range, with decay times varying from 1.78 μs to 805 μs at room temperature. The particular luminescence spectroscopic properties of these lanthanide complexes formed with 3,4,3-LI(1,2-HOPO) were used to characterize their respective solution thermodynamic stabilities as well as those of the corresponding La(III), Gd(III), Dy(III), Ho(III), Er(III), Tm(III), and Lu(III) complexes. The remarkably high affinity of 3,4,3-LI(1,2-HOPO) for lanthanide metal ions and the resulting high complex stabilities (pM values ranging from 17.2 for La(III) to 23.1 for Yb(III)) constitute a necessary but not sufficient criterion to consider this octadentate ligand an optimal candidate for in vivo metal decorporation. The in vivo lanthanide complex stability and decorporation capacity of the ligand were assessed, using the radioactive isotope (152)Eu as a tracer in a rodent model, which provided a direct comparison with the in vitro thermodynamic results and demonstrated the great potential of 3,4,3-LI(1,2-HOPO) as a therapeutic metal chelating agent.},
	number = {33},
	journal = {Dalton Transactions},
	author = {Sturzbecher-Hoehne, Manuel and Ng Pak Leung, Clara and D'Aléo, Anthony and Kullgren, Birgitta and Prigent, Anne-Laure and Shuh, David K and Raymond, Kenneth N and Abergel, Rebecca J},
	year = {2011},
	pmid = {21766096},
	pages = {8340},
	file = {Attachment:/Users/julian/Documents/Mendeley/Sturzbecher-Hoehne et al. - 2011 - 3,4,3-LI(1,2-HOPO) In vitro formation of highly stable lanthanide complexes translates into efficacio.pdf:application/pdf}
}

@article{volf_early_1993,
	title = {Early chelation therapy for injected pu-238 and am-241 in the rat: {Comparison} of 3,4,3-{LIHOPO}, {DFO}-{HOPO}, {DTPA}-{DX}, {DTPA} and {DFOA}},
	volume = {63},
	issn = {09553002},
	doi = {10.1080/09553009314552191},
	number = {6},
	journal = {International Journal of Radiation Biology},
	author = {Volf, V. and Burgada, R. and Raymond, K. N. and Durbin, P. W.},
	year = {1993},
	pmid = {8100266},
	pages = {785--793},
	file = {Attachment:/Users/julian/Documents/Mendeley/Volf et al. - 1993 - Early chelation therapy for injected pu-238 and am-241 in the rat Comparison of 3,4,3-LIHOPO, DFO-HOPO, DTPA-DX, DT.pdf:application/pdf}
}

@article{choi_vitro_2015,
	title = {In {Vitro} {Metabolism} and {Stability} of the {Actinide} {Chelating} {Agent} 3,4,3-{LI}(1,2-{HOPO})},
	volume = {104},
	issn = {00223549},
	url = {http://linkinghub.elsevier.com/retrieve/pii/S0022354915301337},
	doi = {10.1002/jps.24394},
	abstract = {The hydroxypyridinonate ligand 3,4,3-LI(1,2-HOPO) is currently under development for radionuclide chelation therapy. The preclinical characterization of this highly promising ligand comprised the evaluation of its in vitro properties, including microsomal, plasma, and gastrointestinal fluid stability, cytochrome P450 inhibition, plasma protein binding, and intestinal absorption using the Caco-2 cell line. When mixed with active human liver microsomes, no loss of parent compound was observed after 60 min, indicating compound stability in the presence of liver microsomal P450. At the tested concentrations, 3,4,3-LI(1,2-HOPO) did not significantly influence the activities of any of the cytochromal isoforms screened. Thus, 3,4,3-LI(1,2-HOPO) is unlikely to cause drug–drug interactions by inhibiting the metabolic clearance of coadministered drugs metabolized by these enzymes. Plasma protein-binding assays revealed that the compound is protein-bound in dogs and less extensively in rats and humans. In the plasma stability study, the compound was stable after 1 h at 37°C in mouse, rat, dog, and human plasma samples. Finally, a bidirectional permeability assay demonstrated that 3,4,3-LI(1,2-HOPO) is not permeable across the Caco-2 monolayer, highlighting the need to further evaluate the effects of various compounds with known permeability enhancement properties on the permeability of the ligand in future studies. C},
	number = {5},
	journal = {Journal of Pharmaceutical Sciences},
	author = {Choi, Taylor A. and Furimsky, Anna M. and Swezey, Robert and Bunin, Deborah I. and Byrge, Patricia and Iyer, Lalitha V. and Chang, Polly Y. and Abergel, Rebecca J.},
	month = may,
	year = {2015},
	keywords = {ADME, Chelation therapy, Cytochrome p450, Intestinal absorption, Microsomes, Protein binding, Stability},
	pages = {1832--1838},
	file = {Attachment:/Users/julian/Documents/Mendeley/Choi et al. - 2015 - In Vitro Metabolism and Stability of the Actinide Chelating Agent 3,4,3-LI(1,2-HOPO).pdf:application/pdf}
}

@article{an_early_2017,
	title = {From early prophylaxis to delayed treatment: {Establishing} the plutonium decorporation activity window of hydroxypyridinonate chelating agents},
	volume = {267},
	issn = {00092797},
	url = {http://dx.doi.org/10.1016/j.cbi.2016.03.034 http://linkinghub.elsevier.com/retrieve/pii/S000927971630103X},
	doi = {10.1016/j.cbi.2016.03.034},
	abstract = {The potential consequences of a major radiological event are not only large-scale external radiation exposure of the population, but also uncontrolled dissemination of, and internal contamination with, radionuclides. When planning an emergency response to radiological and nuclear incidents, one must consider the need for not only post-exposure treatment for contaminated individuals, but also prophylactic measures to protect the workforce facing contaminated areas and patients in the aftermath of such events. In addition to meeting the desired criteria for post-exposure treatments such as safety, ease of administration, and broad-spectrum efficacy against multiple radionuclides and levels of challenge, ideal prophylactic countermeasures must include rapid onset; induce minimal to no performance-decrementing side effects; be compatible with current military Chemical, Biological, Radiological, Nuclear, and Explosive countermeasures; and require minimal logistical burdens. Hydroxypyridinone-based actinide decorporation agents have shown the most promise as decorporation strategies for various radionuclides of concern, including the actinides plutonium and americium. The studies presented here probe the extent of plutonium decorporation efficacy for two chelating agents, 3,4,3-LI(1,2-HOPO) and 5-LIO(Me-3,2-HOPO), from early pre-exposure time points to a delay of up to 7 days in parenteral or oral treatment administration, i.e., well beyond the initial hours of emergency response. Despite delayed treatment after a contamination event, both ligands clearly enhanced plutonium elimination through the investigated 7-day post-treatment period. In addition, a remarkable prophylactic efficacy was revealed for 3,4,3-LI(1,2-HOPO) with treatment as early as 48??h before the plutonium challenge. This work provides new perspectives in the indication and use of experimental actinide decorporation treatments.},
	journal = {Chemico-Biological Interactions},
	author = {An, Dahlia D. and Kullgren, Birgitta and Jarvis, Erin E. and Abergel, Rebecca J.},
	month = apr,
	year = {2017},
	keywords = {Chelation therapy, Contamination, Medical countermeasure, Prophylaxis, Radionuclides},
	pages = {80--88},
	file = {Attachment:/Users/julian/Documents/Mendeley/An et al. - 2017 - From early prophylaxis to delayed treatment Establishing the plutonium decorporation activity window of hydroxypyridi.pdf:application/pdf}
}

@article{durbin_multidentate_2000,
	title = {Multidentate hydroxypyridinonate ligands for {Pu}({IV}) chelation in vivo: comparative efficacy and toxicity in mouse of ligands containing 1,2-{HOPO} or {Me}-3,2-{HOPO}.},
	volume = {76},
	issn = {0955-3002},
	url = {http://www.ncbi.nlm.nih.gov/pubmed/10716641},
	doi = {10.1080/095530000138853},
	abstract = {PURPOSE To identify the most effective multidentate 1,2-HOPO and Me-3,2-HOPO ligands for chelation of Pu(IV) in vivo. MATERIALS AND METHODS Two sets of ligands with four identical backbones were prepared containing two, three or four bidentate 1,2-HOPO or Me-3,2-HOPO groups, and 3,4,3-LI(1,2-HOPO) was resynthesized in a higher yielding procedure. They were evaluated in mouse for acute toxicity and reduction of tissue 238Pu, in comparison with CaNa3-DTPA (30 micromol kg(-1)). RESULTS Nine HOPO ligands, promptly injected or given orally or injected at low dosage, are superior to CaNa3-DTPA for reducing 238Pu retention in mouse. Five, given by delayed injection or promptly injected or orally administered as ferric complexes, are superior to CaNa3-DTPA or FeNa2-DTPA respectively. The Me-3,2-HOPO ligands are more effective than their structural 1,2-HOPO analogues, demonstrating the greater affinity of Me-3,2-HOPO for Pu(IV) in vivo. CONCLUSIONS The most efficacious ligand, 3,4,3-LI(1,2-HOPO), contains the less stably binding 1,2-HOPO group; therefore, its linear spermine backbone must confer advantages for Pu(IV) binding (greater solubility, more favorable arrangement of ligating groups, more flexible backbone). Effective low toxicity tetradentate 5-LIO(Me-3,2-HOPO) and hexadentate TREN-(Me-3,2-HOPO) and highly effective but moderately toxic 3,4,3-LI(1,2-HOPO) (LD50 approximately 300 micromol kg(-1) in mouse) are recommended for further investigation.},
	number = {2},
	journal = {International journal of radiation biology},
	author = {Durbin, P W and Kullgren, B and Xu, J and Raymond, K N},
	month = feb,
	year = {2000},
	pmid = {10716641},
	pages = {199--214}
}

@article{an_238_2014,
	title = {238 {Pu} elimination profiles after delayed treatment with 3,4,{3LI}(1,{2HOPO}) in female and male {Swiss}-{Webster} mice},
	volume = {90},
	issn = {0955-3002},
	url = {http://www.tandfonline.com/doi/full/10.3109/09553002.2014.925150},
	doi = {10.3109/09553002.2014.925150},
	number = {11},
	journal = {International Journal of Radiation Biology},
	author = {An, Dahlia D and Villalobos, Jonathan A and Morales-Rivera, Joel A and Rosen, Chris J and Bjornstad, Kathleen A. and Gauny, Stacey S and Choi, Taylor A and Sturzbecher-Hoehne, Manuel and Abergel, Rebecca J},
	month = nov,
	year = {2014},
	keywords = {alpha emitters, plutonium, radiation protection},
	pages = {1055--1061},
	file = {Attachment:/Users/julian/Documents/Mendeley/An et al. - 2014 - 238 Pu elimination profiles after delayed treatment with 3,4,3LI(1,2HOPO) in female and male Swiss-Webster mice.pdf:application/pdf}
}

@article{chang_analytical_2013,
	title = {Analytical {Methods} for the {Bioavailability} {Evaluation} of {Hydroxypyridinonate} {Actinide} {Decorporation} {Agents} in {Pre}-{Clinical} {Pharmacokinetic} {Studies}},
	volume = {04},
	issn = {21577064},
	url = {https://www.omicsonline.org/analytical-methods-for-the-bioavailability-evaluation-of-hydroxypyridinonate-actinide-decorporation-agents-in-pre-clinical-pharmacokinetic-studies-2157-7064.1000196.php?aid=16518},
	doi = {10.4172/2157-7064.1000196},
	abstract = {The hydroxypyridinonate ligands 5-LIO(Me-3,2-HOPO) and 3,4,3-LI(1,2-HOPO) are two lead compounds under development for actinide chelation therapy. Methods to quantify these actinide decorporation agents in plasma are necessary to study their in vivo pharmacokinetic behavior. Such bioanalytical methods were developed with rat plasma, using liquid chromatography coupled with tandem mass spectrometry, and have a detection range of 0.05 to 2.5 μg/mL and 0.1 to 5 μg/mL for 5-LIO(Me-3,2-HOPO) and 3,4,3-LI(1,2-HOPO), respectively. These methods were used to determine the in vivo plasma pharmacokinetics of the free acid and four salt forms of each ligand after a single intravenous or oral administration in rats. The different salt forms displayed similar pharmacokinetic profiles to those of the corresponding free acid, and the use of salt co-formers did not improve the oral bioavailability of the active pharmaceutical ingredients in rats. The described bioanalytical detection methods were successfully applied to the selection of solid-state forms of 5âLIO(Me-3,2-HOPO) and 3,4,3-LI(1,2-HOPO) for future preclinical development activities, and will be adapted for use with plasma from other species.},
	number = {07},
	journal = {Journal of Chromatography \& Separation Techniques},
	author = {Chang, Polly Y. and Bunin, Deborah I. and Gow, Jason and Swezey, Robert and Shinn, Walter and Shuh, David K. and Abergel, Rebecca J.},
	month = dec,
	year = {2013},
	pages = {1--6},
	file = {Attachment:/Users/julian/Documents/Mendeley/analytical-methods-for-the-bioavailability-evaluation-of-hydroxypyridinonate-actinide-decorporation-agents-in-pre-clinical-pharmacokinet.pdf:application/pdf}
}

@article{durbin_vivo_1994,
	title = {In {Vivo} {Chelation} of {Am}({III}), {Pu}({IV}), {Np}({V}), and {U}({VI}) in {Mice} by {TREN}-({Me}-3,2-{HOPO})},
	volume = {53},
	issn = {1742-3406},
	url = {https://academic.oup.com/rpd/article-lookup/doi/10.1093/oxfordjournals.rpd.a082298},
	doi = {10.1093/oxfordjournals.rpd.a082298},
	number = {1-4},
	journal = {Radiation Protection Dosimetry},
	author = {Durbin, P.W. and Kullgren, B. and Xu, J. and Raymond, K.N.},
	month = may,
	year = {1994},
	pages = {305--309}
}

@article{bunin_dose-dependent_2013,
	title = {Dose-dependent efficacy and safety toxicology of hydroxypyridinonate actinide decorporation agents in rodents: towards a safe and effective human dosing regimen.},
	volume = {179},
	issn = {1938-5404},
	url = {http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3633606&tool=pmcentrez&rendertype=abstract},
	doi = {10.1667/RR3115.1},
	abstract = {Two hydroxypyridinone-containing actinide decorporation agents, 3,4,3-LI(1,2-HOPO) and 5-LIO(Me-3,2-HOPO), are being developed for the treatment of internal actinide contamination by chelation therapy. Dose-response efficacy profiles in mice were established for the removal of intravenously injected (238)Pu and (241)Am after parenteral and oral treatment with these chelators. In both cases, presumed efficacious doses promoted substantially greater actinide elimination rates than the currently approved agent, diethylenetriamine-pentaacetic acid, considering two different interspecies scaling methods for the conversion of human doses to equivalent rodent dose levels. In addition, genotoxicity of both ligands was assessed using the Salmonella/ Escherichia coli /microsome plate incorporation test and the Chinese hamster ovary cell chromosome aberration assay, showing that neither ligand is genotoxic, in the presence and absence of metabolic activation. Finally, maximum tolerated dose studies were performed in rats for seven consecutive daily oral administrations with the chelators, confirming the safety of the presumed efficacious doses for 3,4,3-LI(1,2-HOPO) and 5-LIO(Me-3,2-HOPO). The results of these studies add to the growing body of evidence that both decorporation agents have remarkable decorporation efficacy properties and promising safety toxicology profiles. These results are necessary components of the regulatory approval process and will help determine the optimal human dosing regimens for the treatment of internal radionuclide contamination.},
	number = {2},
	journal = {Radiation research},
	author = {Bunin, Deborah I and Chang, Polly Y and Doppalapudi, Rupa S and Riccio, Edward S and An, Dahlia and Jarvis, Erin E and Kullgren, Birgitta and Abergel, Rebecca J},
	year = {2013},
	pmid = {23289385},
	keywords = {Mutation, Humans, Animals, Signal Transduction, Chelating Agents, Chelating Agents: chemistry, Mice, Female, Male, Rats, Safety, Chelating Agents: administration \& dosage, Americium, Plutonium, Americium: chemistry, Bystander Effect, Bystander Effect: drug effects, Chelating Agents: adverse effects, Chelating Agents: pharmacology, CHO Cells, Cricetinae, Cricetulus, Dose-Response Relationship, Drug, Maximum Tolerated Dose, Mutagenicity Tests, Plutonium: chemistry, Pyridones, Pyridones: administration \& dosage, Pyridones: adverse effects, Pyridones: chemistry, Pyridones: pharmacology, Signal Transduction: drug effects, Toxicity Tests, Tumor Suppressor Protein p53, Tumor Suppressor Protein p53: genetics},
	pages = {171--82},
	file = {Attachment:/Users/julian/Documents/Mendeley/Bunin et al. - 2013 - Dose-dependent efficacy and safety toxicology of hydroxypyridinonate actinide decorporation agents in rodents towa.pdf:application/pdf}
}

repository: julianrees/academic-kickstart

repo_name: julianrees/academic-kickstart


text:
DESCRIPTION = "PedalPII SDK package group"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://${COMMON_LICENSE_DIR}/MIT;md5=0835ade698e0bcf8506ecda2f7b4f302"

inherit packagegroup

PACKAGES = "\
    packagegroup-pedalpii-sdk \
    "

RDEPENDS_${PN} += "\
	jack-mod-pedalpii-initscripts-mod-sdk \
	mod-sdk \
	"

license: MIT

license_type: permissive

branch_name: refs/heads/master

gha_license_id: MIT

gha_language: BitBake

extension: bb


text:
@article{shu2018fakenewsnet,
	title={FakeNewsNet: A Data Repository with News Content, Social Context and Dynamic Information for Studying Fake News on Social Media},
	author={Shu, Kai and  Mahudeswaran, Deepak and Wang, Suhang and Lee, Dongwon and Liu, Huan},
	journal={arXiv preprint arXiv:1809.01286},
	year={2018}
}
@article{Shu:2017:FND:3137597.3137600,
	author = {Shu, Kai and Sliva, Amy and Wang, Suhang and Tang, Jiliang and Liu, Huan},
	title = {Fake News Detection on Social Media: A Data Mining Perspective},
	journal = {SIGKDD Explor. Newsl.},
	issue_date = {June 2017},
	volume = {19},
	number = {1},
	month = sep,
	year = {2017},
	issn = {1931-0145},
	pages = {22--36},
	numpages = {15},
	url = {http://doi.acm.org/10.1145/3137597.3137600},
	doi = {10.1145/3137597.3137600},
	acmid = {3137600},
	publisher = {ACM},
	address = {New York, NY, USA},
}
@article{shu2017exploiting,
	title={Exploiting Tri-Relationship for Fake News Detection},
	author={Shu, Kai and Wang, Suhang and Liu, Huan},
	journal={arXiv preprint arXiv:1712.07709},
	year={2017}
}
@article{10.1257/jep.31.2.211,
	Author = {Allcott, Hunt and Gentzkow, Matthew},
	Title = {Social Media and Fake News in the 2016 Election},
	Journal = {Journal of Economic Perspectives},
	Volume = {31},
	Number = {2},
	Year = {2017},
	Month = {May},
	Pages = {211-36},
	DOI = {10.1257/jep.31.2.211},
	URL = {http://www.aeaweb.org/articles?id=10.1257/jep.31.2.211}
}
@misc{vaikmaa_2019,
	title={Manipulation And Disinformation In Social Media: The Case Of Estonia And \#ESTexitEU},
	url={https://euvsdisinfo.eu/manipulation-and-disinformation-in-social-media-the-case-of-estonia-and-estexiteu/},
	journal={EU vs DISINFORMATION},
	author={Vaikmaa, Madis},
	year={2019},
	month={4}
}
@misc{agencies_2016,
	title={Washington gunman motivated by fake news 'Pizzagate' conspiracy},
	url={https://www.theguardian.com/us-news/2016/dec/05/gunman-detained-at-comet-pizza-restaurant-was-self-investigating-fake-news-reports}, journal={The Guardian}, publisher={Guardian News and Media},
	author={agencies, Guardian staff and},
	year={2016},
	month={12}
}
@inproceedings{Guo:2018:RDH:3269206.3271709,
	author = {Guo, Han and Cao, Juan and Zhang, Yazi and Guo, Junbo and Li, Jintao},
	title = {Rumor Detection with Hierarchical Social Attention Network},
	booktitle = {Proceedings of the 27th ACM International Conference on Information and Knowledge Management},
	series = {CIKM '18},
	year = {2018},
	isbn = {978-1-4503-6014-2},
	location = {Torino, Italy},
	pages = {943--951},
	numpages = {9},
	url = {http://doi.acm.org/10.1145/3269206.3271709},
	doi = {10.1145/3269206.3271709},
	acmid = {3271709},
	publisher = {ACM},
	address = {New York, NY, USA},
	keywords = {attention mechanism, recurrent neural network, rumor detection},
}
@inproceedings{Khattar:2019:MMV:3308558.3313552,
	author = {Khattar, Dhruv and Goud, Jaipal Singh and Gupta, Manish and Varma, Vasudeva},
	title = {MVAE: Multimodal Variational Autoencoder for Fake News Detection},
	booktitle = {The World Wide Web Conference},
	series = {WWW '19},
	year = {2019},
	isbn = {978-1-4503-6674-8},
	location = {San Francisco, CA, USA},
	pages = {2915--2921},
	numpages = {7},
	url = {http://doi.acm.org/10.1145/3308558.3313552},
	doi = {10.1145/3308558.3313552},
	acmid = {3313552},
	publisher = {ACM},
	address = {New York, NY, USA},
	keywords = {Fake news detection, microblogs, multimodal fusion, variational autoencoders},
}
@INPROCEEDINGS{7023340,
	author={Z. {Jin} and J. {Cao} and Y. {Jiang} and Y. {Zhang}},
	booktitle={2014 IEEE International Conference on Data Mining},
	title={News Credibility Evaluation on Microblog with a Hierarchical Propagation Model},
	year={2014},
	volume={},
	number={},
	pages={230-239},
	keywords={information analysis;iterative methods;optimisation;social networking (online);news credibility evaluation;microblog;hierarchical propagation model;news communication media;social network;three-layer credibility network;graph optimization problem;iterative algorithm;Optimization;Clustering algorithms;Vectors;Semantics;Feature extraction;Symmetric matrices;Media;Social media credibility;Microblog;news credibility;rumor detection},
	doi={10.1109/ICDM.2014.91},
	ISSN={1550-4786},
	month={12}
}
@article{shen2017discovering,
	title={Discovering social spammers from multiple views},
	author={Shen, Hua and Ma, Fenglong and Zhang, Xianchao and Zong, Linlin and Liu, Xinyue and Liang, Wenxin},
	journal={Neurocomputing},
	volume={225},
	pages={49--57},
	year={2017},
	publisher={Elsevier}
}
@inproceedings{Huang:2017:DFO:3041021.3054233,
	author = {Huang, Hen-Hsen and Wen, Yu-Wei and Chen, Hsin-Hsi},
	title = {Detection of False Online Advertisements with DCNN},
	booktitle = {Proceedings of the 26th International Conference on World Wide Web Companion},
	series = {WWW '17 Companion},
	year = {2017},
	isbn = {978-1-4503-4914-7},
	location = {Perth, Australia},
	pages = {795--796},
	numpages = {2},
	url = {https://doi.org/10.1145/3041021.3054233},
	doi = {10.1145/3041021.3054233},
	acmid = {3054233},
	publisher = {International World Wide Web Conferences Steering Committee},
	address = {Republic and Canton of Geneva, Switzerland},
	keywords = {convolutional neural network, opinion spam detection, overstated advertisement identification},
}
@inproceedings{Ruchansky:2017:CHD:3132847.3132877,
	author = {Ruchansky, Natali and Seo, Sungyong and Liu, Yan},
	title = {CSI: A Hybrid Deep Model for Fake News Detection},
	booktitle = {Proceedings of the 2017 ACM on Conference on Information and Knowledge Management},
	series = {CIKM '17},
	year = {2017},
	isbn = {978-1-4503-4918-5},
	location = {Singapore, Singapore},
	pages = {797--806},
	numpages = {10},
	url = {http://doi.acm.org/10.1145/3132847.3132877},
	doi = {10.1145/3132847.3132877},
	acmid = {3132877},
	publisher = {ACM},
	address = {New York, NY, USA},
	keywords = {deep learning, fake news detection, group anomaly detection, neural network, social networks, temporal analysis},
}
@inproceedings{Wang:2018:EEA:3219819.3219903,
	author = {Wang, Yaqing and Ma, Fenglong and Jin, Zhiwei and Yuan, Ye and Xun, Guangxu and Jha, Kishlay and Su, Lu and Gao, Jing},
	title = {EANN: Event Adversarial Neural Networks for Multi-Modal Fake News Detection},
	booktitle = {Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery \&\#38; Data Mining},
	series = {KDD '18},
	year = {2018},
	isbn = {978-1-4503-5552-0},
	location = {London, United Kingdom},
	pages = {849--857},
	numpages = {9},
	url = {http://doi.acm.org/10.1145/3219819.3219903},
	doi = {10.1145/3219819.3219903},
	acmid = {3219903},
	publisher = {ACM},
	address = {New York, NY, USA},
	keywords = {adversarial neural networks, deep learning, fake news detection},
}
@article{DBLP:journals/corr/PotthastKRBS17,
	author    = {Martin Potthast and
				Johannes Kiesel and
				Kevin Reinartz and
				Janek Bevendorff and
				Benno Stein},
	title     = {A Stylometric Inquiry into Hyperpartisan and Fake News},
	journal   = {CoRR},
	volume    = {abs/1702.05638},
	year      = {2017},
	url       = {http://arxiv.org/abs/1702.05638},
	archivePrefix = {arXiv},
	eprint    = {1702.05638},
	timestamp = {Mon, 13 Aug 2018 16:47:50 +0200},
	biburl    = {https://dblp.org/rec/bib/journals/corr/PotthastKRBS17},
	bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-01728,
	author    = {Chuan Guo and
				Juan Cao and
				Xueyao Zhang and
				Kai Shu and
				Miao Yu},
	title     = {Exploiting Emotions for Fake News Detection on Social Media},
	journal   = {CoRR},
	volume    = {abs/1903.01728},
	year      = {2019},
	url       = {http://arxiv.org/abs/1903.01728},
	archivePrefix = {arXiv},
	eprint    = {1903.01728},
	timestamp = {Sat, 30 Mar 2019 19:27:21 +0100},
	biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1903-01728},
	bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{wang-2017-liar,
	title = {{``}Liar, Liar Pants on Fire{''}: A New Benchmark Dataset for Fake News Detection},
	author = {Wang, William Yang},
	booktitle = {Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers)},
	month = jul,
	year = {2017},
	address = {Vancouver, Canada},
	publisher = {Association for Computational Linguistics},
	url = {https://www.aclweb.org/anthology/P17-2067},
	doi = {10.18653/v1/P17-2067},
	pages = {422--426},
}
@inproceedings{karimi-tang-2019-learning,
    title = {Learning Hierarchical Discourse-level Structure for Fake News Detection},
    author = {Karimi, Hamid  and
      Tang, Jiliang},
    booktitle = {Proceedings of the 2019 Conference of the North {A}merican Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers)},
    month = jun,
    year = {2019},
    address = {Minneapolis, Minnesota},
    publisher = {Association for Computational Linguistics},
    url = {https://www.aclweb.org/anthology/N19-1347},
    pages = {3432--3442},
}
@inproceedings{karimi-etal-2018-multi,
	title = "Multi-Source Multi-Class Fake News Detection",
	author = "Karimi, Hamid  and
	Roy, Proteek  and
	Saba-Sadiya, Sari  and
	Tang, Jiliang",
	booktitle = "Proceedings of the 27th International Conference on Computational Linguistics",
	month = aug,
	year = "2018",
	address = "Santa Fe, New Mexico, USA",
	publisher = "Association for Computational Linguistics",
	url = "https://www.aclweb.org/anthology/C18-1131",
	pages = "1546--1557",
	abstract = "Fake news spreading through media outlets poses a real threat to the trustworthiness of information and detecting fake news has attracted increasing attention in recent years. Fake news is typically written intentionally to mislead readers, which determines that fake news detection merely based on news content is tremendously challenging. Meanwhile, fake news could contain true evidence to mock true news and presents different degrees of fakeness, which further exacerbates the detection difficulty. On the other hand, the spread of fake news produces various types of data from different perspectives. These multiple sources provide rich contextual information about fake news and offer unprecedented opportunities for advanced fake news detection. In this paper, we study fake news detection with different degrees of fakeness by integrating multiple sources. In particular, we introduce approaches to combine information from multiple sources and to discriminate between different degrees of fakeness, and propose a Multi-source Multi-class Fake news Detection framework MMFD, which combines automated feature extraction, multi-source fusion and automated degrees of fakeness detection into a coherent and interpretable model. Experimental results on the real-world data demonstrate the effectiveness of the proposed framework and extensive experiments are further conducted to understand the working of the proposed framework.",
}
@inproceedings{Yang2019UnsupervisedFN,
	title={Unsupervised Fake News Detection on Social Media: A Generative Approach},
	author={Shuo Yang and Kai Shu and Suhang Wang and Renjie Gu and Fan Wu and Huan Liu},
	booktitle={AAAI},
	year={2019}
}
@inproceedings{Castillo:2011:ICT:1963405.1963500,
	author = {Castillo, Carlos and Mendoza, Marcelo and Poblete, Barbara},
	title = {Information Credibility on Twitter},
	booktitle = {Proceedings of the 20th International Conference on World Wide Web},
	series = {WWW '11},
	year = {2011},
	isbn = {978-1-4503-0632-4},
	location = {Hyderabad, India},
	pages = {675--684},
	numpages = {10},
	url = {http://doi.acm.org/10.1145/1963405.1963500},
	doi = {10.1145/1963405.1963500},
	acmid = {1963500},
	publisher = {ACM},
	address = {New York, NY, USA},
	keywords = {social media analytics, social media credibility, twitter},
}
@INPROCEEDINGS{8397048,
	author={K. {Shu} and S. {Wang} and H. {Liu}},
	booktitle={2018 IEEE Conference on Multimedia Information Processing and Retrieval (MIPR)},
	title={Understanding User Profiles on Social Media for Fake News Detection},
	year={2018},
	volume={},
	number={},
	pages={430-435},
	keywords={social networking (online);incorporate user social engagements;user profiles;social media;fake news items;future automatic fake news detection research;traditional news outlets;Social network services;Feature extraction;Linguistics;Correlation;Ecosystems;Visualization;Metadata;Fake News;User Profile;Trust Analysis},
	doi={10.1109/MIPR.2018.00092},
	ISSN={},
	month={4},
}
@article{DBLP:journals/corr/abs-1904-13355,
	author    = {Kai Shu and
				Xinyi Zhou and
				Suhang Wang and
				Reza Zafarani and
				Huan Liu},
	title     = {The Role of User Profile for Fake News Detection},
	journal   = {CoRR},
	volume    = {abs/1904.13355},
	year      = {2019},
	url       = {http://arxiv.org/abs/1904.13355},
	archivePrefix = {arXiv},
	eprint    = {1904.13355},
	timestamp = {Thu, 02 May 2019 15:13:44 +0200},
	biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1904-13355},
	bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{Tacchini2017SomeLI,
	title={Some Like it Hoax: Automated Fake News Detection in Social Networks},
	author={Eugenio Tacchini and Gabriele Ballarin and Marco L. Della Vedova and Stefano Moret and Luca de Alfaro},
	journal={ArXiv},
	year={2017},
	volume={abs/1704.07506}
}
@inproceedings{Jin:2016:NVE:3016100.3016318,
	author = {Jin, Zhiwei and Cao, Juan and Zhang, Yongdong and Luo, Jiebo},
	title = {News Verification by Exploiting Conflicting Social Viewpoints in Microblogs},
	booktitle = {Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence},
	series = {AAAI'16},
	year = {2016},
	location = {Phoenix, Arizona},
	pages = {2972--2978},
	numpages = {7},
	url = {http://dl.acm.org/citation.cfm?id=3016100.3016318},
	acmid = {3016318},
	publisher = {AAAI Press},
}
@inproceedings{Wu:2018:TFF:3159652.3159677,
	author = {Wu, Liang and Liu, Huan},
	title = {Tracing Fake-News Footprints: Characterizing Social Media Messages by How They Propagate},
	booktitle = {Proceedings of the Eleventh ACM International Conference on Web Search and Data Mining},
	series = {WSDM '18},
	year = {2018},
	isbn = {978-1-4503-5581-0},
	location = {Marina Del Rey, CA, USA},
	pages = {637--645},
	numpages = {9},
	url = {http://doi.acm.org/10.1145/3159652.3159677},
	doi = {10.1145/3159652.3159677},
	acmid = {3159677},
	publisher = {ACM},
	address = {New York, NY, USA},
	keywords = {classification, fake news detection, graph mining, misinformation, social media mining, social network analysis},
}
@article{DBLP:journals/corr/abs-1902-06673,
	author    = {Federico Monti and
				Fabrizio Frasca and
				Davide Eynard and
				Damon Mannion and
				Michael M. Bronstein},
	title     = {Fake News Detection on Social Media using Geometric Deep Learning},
	journal   = {CoRR},
	volume    = {abs/1902.06673},
	year      = {2019},
	url       = {http://arxiv.org/abs/1902.06673},
	archivePrefix = {arXiv},
	eprint    = {1902.06673},
	timestamp = {Tue, 21 May 2019 18:03:39 +0200},
	biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1902-06673},
	bibsource = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{ijcai2018-533,
  title     = {Neural User Response Generator: Fake News Detection with Collective User Intelligence},
  author    = {Feng Qian and Chengyue Gong and Karishma Sharma and Yan Liu},
  booktitle = {Proceedings of the Twenty-Seventh International Joint Conference on
               Artificial Intelligence, {IJCAI-18}},
  publisher = {International Joint Conferences on Artificial Intelligence Organization},
  pages     = {3834--3840},
  year      = {2018},
  month     = {7},
  doi       = {10.24963/ijcai.2018/533},
  url       = {https://doi.org/10.24963/ijcai.2018/533},
}
@inproceedings{Yu:2017:SSG:3298483.3298649,
	author = {Yu, Lantao and Zhang, Weinan and Wang, Jun and Yu, Yong},
	title = {SeqGAN: Sequence Generative Adversarial Nets with Policy Gradient},
	booktitle = {Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence},
	series = {AAAI'17},
	year = {2017},
	location = {San Francisco, California, USA},
	pages = {2852--2858},
	numpages = {7},
	url = {http://dl.acm.org/citation.cfm?id=3298483.3298649},
	acmid = {3298649},
	publisher = {AAAI Press},
}

gha_language: TeX

extension: bib


text:
@article{vasco_3d_2017,
 abstract = {In this work, a new tool was developed, the MORIA program that readily translates Rutherford backscattering spectrometry (RBS) output data into visual information, creating a display of the distribution of elements in a true three-dimensional (3D) environment. The program methodology is illustrated with the analysis of yeast Saccharomyces cerevisiae cells, exposed to copper oxide nanoparticles (CuO-NP) and HeLa cells in the presence of gold nanoparticles (Au-NP), using different beam species, energies and nuclear microscopy systems. Results demonstrate that for both cell types, the NP internalization can be clearly perceived. The 3D models of the distribution of CuO-NP in S. cerevisiae cells indicate the nonuniform distribution of NP in the cellular environment and a relevant confinement of CuO-NP to the cell wall. This suggests the impenetrability of certain cellular organelles or compartments for NP. By contrast, using a high-resolution ion beam system, discretized agglomerates of Au-NP were visualized inside the HeLa cell. This is consistent with the mechanism of entry of these NPs in the cellular space by endocytosis enclosed in endosomal vesicles. This approach shows RBS to be a powerful imaging technique assigning to nuclear microscopy unparalleled potential to assess nanoparticle distribution inside the cellular volume.},
 author = {Vasco, M. S. and Alves, L. C. and Corregidor, V. and Correia, D. and Godinho, C. P. and Sá‐Correia, I. and Bettiol, A. and Watt, F. and Pinheiro, T.},
 copyright = {© 2017 The Authors Journal of Microscopy © 2017 Royal Microscopical Society},
 doi = {10.1111/jmi.12561},
 file = {Snapshot:/Users/miguelvasco/Zotero/storage/APXUFNP9/jmi.html:text/html;Full Text PDF:/Users/miguelvasco/Zotero/storage/GI8PREKN/Vasco et al. - 2017 - 3D map distribution of metallic nanoparticles in w.pdf:application/pdf},
 issn = {1365-2818},
 journal = {Journal of Microscopy},
 keywords = {3D imaging, nanoparticles internalization, nuclear microscopy, Rutherford backscattering},
 language = {fr},
 number = {2},
 pages = {227--236},
 title = {3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy},
 url = {https://www.onlinelibrary.wiley.com/doi/abs/10.1111/jmi.12561},
 urldate = {2020-01-04},
 volume = {267},
 year = {2017}
}

repository: miguelsvasco/academic-kickstart

repo_name: miguelsvasco/academic-kickstart


text:
@article{contreras_kallens_palabra_2014,
 abstract = {En este artículo, me concentro en una pregunta de carácter metateórico respecto de lateoría de conceptos en ciencia cognitiva: ¿es necesaria la postulación de conceptos? Pararesponderla, inicio mi argumentación desde el punto de partida de que los conceptosson entidades teóricas inobservables postuladas con fines explicativos y de coherenciacon una teoría. Me baso en esto para dividir los desiderata de una teoría ideal presentadospor Fodor (1998) y Prinz (2002) en desiderata explicativos y desiderata teóricos.Los desiderata teóricos son sólo compromisos con la estructura de la Teoría Representacionalde la Mente, por lo que no es menester aceptarlos. Así, identificaré los explanandade la postulación de conceptos mediante el análisis de los desiderata explicativos. Unavez definido este punto, presentaré tanto descripciones alternativas de los fenómenoscomo explicaciones plausibles de ellos en esos términos. Con esto, pretendo minar loscimientos de lo que ha sido considerado como el mayor argumento a favor de la existenciade conceptos: su exclusividad como explicación de sus explananda. Concluyo conalgunas observaciones acerca de las consecuencias teóricas y metateóricas de los argumentosdesarrollados.},
 author = {Contreras Kallens, Pablo},
 copyright = {Derechos de autor 2015},
 doi = {10.18270/rcfc.v14i29.667},
 file = {Kallens_2014_Palabra y concepto.pdf:C\:\\Users\\Pablo\\Dropbox\\PDF_LIBRARY\\Revista Colombiana de Filosofía de la Ciencia2014\\Kallens_2014_Palabra y concepto.pdf:application/pdf;Snapshot:C\:\\Users\\Pablo\\Zotero\\storage\\W4SJHXQT\\667.html:text/html},
 issn = {2463-1159},
 journal = {Revista Colombiana de Filosofía de la Ciencia},
 language = {es},
 number = {29},
 shorttitle = {Palabra y concepto},
 title = {Palabra y concepto: acercamiento a un eliminativismo conceptual en ciencia cognitiva},
 url = {https://revistas.unbosque.edu.co/index.php/rcfc/article/view/667},
 urldate = {2020-01-02},
 volume = {14},
 year = {2014}
}

repository: contreraskallens/academic-kickstart

repo_name: contreraskallens/academic-kickstart


text:
@article{lai_inflammation_2016,
 abstract = {© 2016 Elsevier Inc. Antioxidants and fatty acids are associated with depression and inflammation, and inflammation appears to predict depression risk; hence, the associations between these nutrients and depression may be mediated by inflammation. We hypothesized that inflammatory markers interleukin (IL)-6 and C-reactive protein (CRP) mediate the associations between antioxidant and fatty acid intakes, and depression. Participants were from the Hunter Community Study, a longitudinal cohort of adults aged 55-85 years. Dietary intake was assessed using the Older Australian's Food Frequency Questionnaire. Fasting blood samples were drawn for analysis of nutrient and inflammatory biomarkers. Depressive symptoms were assessed using the 20-item Center for Epidemiologic Studies-Depression scale at baseline and at 5-year follow-up. Linear mixed models were used to investigate longitudinal associations between dietary intakes and depression, and mediation analyses were carried out to determine if IL-6 and/or CRP were the mediators. Analyses were conducted on men and women separately and adjusted for potential confounders. Fruit and monounsaturated fat intakes were negatively associated with depression, whereas total fat and saturated fat intakes were positively associated with depression in both sexes. Omega-3 polyunsaturated fat was inversely associated with depression in men only. IL-6 was a significant mediator of the association between fruits with low carotenoid content and depression in women. CRP significantly mediated the relationship between total fat, saturated fat, and monounsaturated fat intakes and depression in women, and saturated fat intake and depression in men. Our findings raise the possibility that the association between fatty acid intake and depression is partially mediated by inflammatory markers.},
 author = {Lai, J.S. and Oldmeadow, C. and Hure, A.J. and McEvoy, M. and Hiles, S.A. and Boyle, M. and Attia, J.},
 doi = {10.1016/j.nutres.2015.11.017},
 issn = {1879-0739},
 journal = {Nutrition Research},
 keywords = {mediaiton analysis},
 month = {March},
 number = {3},
 pages = {234--245},
 title = {Inflammation mediates the association between fatty acid intake and depression in older men and women},
 volume = {36},
 year = {2016}
}

repository: ChrisOldmeadow/academic-kickstart

repo_name: ChrisOldmeadow/academic-kickstart


text:
@article{saritaSMCM1995,
  author  = {Sarita V.Adve, Kourosh Gharachorloo},
  title   = {{Shared Memory Consistency Models: A Tutorial}},
  journal = {{Rice University ECE Technical Report 9512}},
  year    = 1995,
}

repository: iluoyi/parallel-computing-course

repo_name: iluoyi/parallel-computing-course


text: Mumford et al., (2020). SunPy: A Python package for Solar Physics. Journal of Open Source Software, 5(46), 1832.

repository: prateekiiest/academic-kickstart

repo_name: prateekiiest/academic-kickstart

gha_language: Shell


text:
require lemon.inc

PR = "r0"

inherit native

do_stage() {
	install -d ${STAGING_BINDIR}
	install -m 0755 lemon ${STAGING_BINDIR}
	install -m 0644 lempar.c ${STAGING_BINDIR}
}


text: .full-page{height:100vh;display:flex;flex-direction:column}.page-header{padding:.625rem 1.25rem;background-color:#bb0b0b;color:#fff}.page-body{overflow-y:auto;flex:1;border:1px solid #bb0b0b;padding:.3125rem;box-shadow:0 0 10px inset rgba(187,11,11,.3)}.page-body ol{margin-left:1.25rem}.page-body code{background-color:rgba(187,11,11,.3);padding:.3125rem}.page-footer{text-align:right;padding:.3125rem}.page-footer .btn{background-color:#bb0b0b;color:#fff}.form-control{height:1.875rem;box-sizing:border-box}.module-box{max-height:40vh;overflow-y:auto}.table th{text-align:right}.table td{text-align:left;line-height:1.875rem}.table thead th{text-align:left}@media (min-height:48rem){.full-page{height:60vh}}

extension: css


text:
/*头部*/
*{
    margin:0;
    padding:0;
    font-size: 12px;
}
html{
    width: 100%;
    background: #f8f8f8;
}
a{
    text-decoration: none;
    color: #333;
}
.header{
    width: 100%;
    height: 40px;
    border-bottom: 1px solid #cccccc;
    /*color:#fff;*/
    color: #333;
    font-size: 18px;
    padding-top:5px;
    padding-left:10px ;
    padding-right: 20px;
    box-sizing: border-box;
    text-align: center;
    background:#f10215;
    background: #fff;
}
.title{
    font-size: 20px;
}
.header .back{
    margin-top:5px;
    float: left;
    width:20px;
    height: 20px;
}
.header .back img{
    width:20px;
    height: 20px;
}
.cog {
    width: 30px;
    float: right;
}
.cog a{
    color: #515151;
    font-size: 20px;
}
.items{
    width: 100%;
    height: 40px;
    background: #fff;
    border-bottom:1px solid #ccc ;
    line-height: 40px;
    color: #333;
}
.items .labels{
    width:40%;
    float: left;
    text-indent: 15px;
    font-size: 16px;
}
.items img{
    vertical-align: middle;
}
.items .arrows{
    float: right;
    width: 40%;
    text-align: right;
    padding-right:10px ;
}
.box3{
    width: 280px;
    height: 35px;
    border-radius: 35px;
    color: #fff;
    margin:150px auto;
    line-height: 35px;
    font-size: 16px;
    text-align: center;
    background: rgba(0,0,0,0.7);
    display: none;
}

repository: lhjdhr/ReactOne

repo_name: lhjdhr/ReactOne


text:
@article{jla_predictive_2020,
title={Utilizing Student Time Series Behaviour in Learning Management Systems for Early Prediction of Course Performance},
volume={7},
url={https://learning-analytics.info/index.php/JLA/article/view/6777},
DOI={10.18608/jla.2020.72.1},
abstractNote={
Predictive analytics in higher education has become increasingly popular in recent years with the growing availability of educational big data. Particularly, a wealth of student activity data is available from learning management systems (LMSs) in most academic institutions. However, previous investigations into predictive analytics in higher education using LMS activity data did not adequately accommodate student behaviours in the form of time series. In this study, we have applied a deep learning approach — long short-term memory (LSTM) networks — to analyze student online temporal behaviours using their LMS data for the early prediction of course performance. To reveal the potential of the deep learning approach in predictive analytics, we compared LSTM networks with eight conventional machine learning classifiers in terms of the prediction performance as measured by the area under the ROC (receiver operating characteristic) curve (AUC) scores. Results indicate that using the deep learning approach, time series information about click frequencies successfully provided early detection of at-risk students with moderate prediction accuracy. In addition, the deep learning approach showed higher prediction performance and stronger generalizability than the machine learning classifiers.
},
number={2},
journal={Journal of Learning Analytics},
author={Chen, Fu and Cui, Ying},
year={2020},
month={Sep.},
pages={1-17} }


text:
LICENSE = "MIT"
LIC_FILES_CHKSUM="file://LICENSE.md;md5=a1de4af539197c968484564e2632ac9e"

inherit cmake

SRCREV = "7.0-Reloaded"
SRC_URI = "gitsm://gitlab.com/recalbox/recalbox-emulationstation.git;protocol=https;branch=master \
           file://0001-Fixed-missing-string-include.patch \
           "
S = "${WORKDIR}/git"

DEPENDS = " \
  boost \
  curl \
  freeimage \
  freetype \
  ffmpeg \
  libzip \
  libeigen \
  libsdl2 \
  libsdl2-mixer \
  rapidjson \
"

PACKAGECONFIG:rpi ??= " \
  gles \
  rpi \
"

PACKAGECONFIG ??= " \
  ${@bb.utils.contains('DISTRO_FEATURES', 'x11', 'gl', '', d)} \
"

PACKAGECONFIG[cec] = "-DCEC=ON,-DCEC=OFF,libcec"
PACKAGECONFIG[gl] = "-DGL=ON,-DGL=OFF"
PACKAGECONFIG[gles] = "-DGLES=ON,-DGLES=OFF,virtual/egl"
PACKAGECONFIG[rpi] =  "-DRPI=ON,-DRPI=OFF,userland"


text:
@INPROCEEDINGS{Ghoniem2015,
  author = {Mohammad Ghoniem and Ma\"el Cornil and Bertjan Broeksema and Micka\"el Stefas and Beno\^\it Otjacques},
  title = {{Weighted Maps}: Treemap visualization of geolocated quantitative data},
  abstract = {A wealth of census data relative to hierarchical administrative subdivisions are now available. It is therefore desirable for hierarchical data visualization techniques, to offer a spatially consistent representation of such data. This paper focuses on a widely used technique for hierarchical data, namely treemaps, with a particular emphasis on a specific family of treemaps, designed to take into account spatial constraints in the layout, called Spatially Dependent Treemap (SDT). The contributions of this paper are threefold. First, we present the ``Weighted Maps'', a novel SDT layout algorithm and discuss the algorithmic differences with the other state-of-the-art SDT algorithms. Second, we present the quantitative results and analyses of a number of metrics that were used to assess the quality of the resulting layouts. The analyses are illustrated with figures generated from various datasets. Third, we show that the Weighted Maps algorithm offers a significant advantage for the layout of large flat cartograms and multilevel hierarchies having a large branching factor.},
  year = {2015},
  booktitle = {VDA'15: Proceedings of the Conference on Visualization and Data Analysis},
  editor = {David L. Kao and Ming C. Hao and Mark A. Livingston and Thomas Wischgoll},
  publisher = {SPIE},
  doi = {10.1117/12.2079420}
}

repository: vis-au/treevisnet

repo_name: vis-au/treevisnet


text:
@article{DesignAnalysisRobust_nguyen_2010,
 abstract = {This paper presents results on the design and analysis of a robust genetic Muller C-element. The Muller C-element is a standard logic gate commonly used to synchronize independent processes in most asynchronous electronic circuits. Synthetic biological logic gates have been previously demonstrated, but there remain many open issues in the design of sequential (state-holding) logic operations. Three designs are considered for the genetic Muller C-element: a majority gate, a toggle switch, and a speed-independent implementation. While the three designs are logically equivalent, each design requires different assumptions to operate correctly. The majority gate design requires the most timing assumptions, the speed-independent design requires the least, and the toggle switch design is a compromise between the two. This paper examines the robustness of these designs as well as the effects of parameter variation using stochastic simulation. The results show that robustness to timing assumptions does not necessarily increase reliability, suggesting that modifications to existing logic design tools are going to be necessary for synthetic biology. Parameter variation simulations yield further insights into the design principles necessary for building robust genetic gates. The results suggest that high gene count, cooperativity of at least two, tight repression, and balanced decay rates are necessary for robust gates. Finally, this paper presents a potential application of the genetic Muller C-element as a quorum-mediated trigger.},
 annotation = {00000},
 author = {Nguyen, Nam-phuong and Myers, Chris and Kuwahara, Hiroyuki and Winstead, Chris and Keener, James},
 doi = {10.1016/j.jtbi.2009.10.026},
 issn = {0022-5193},
 journal = {Journal of Theoretical Biology},
 keywords = {Genetic circuit,Synthetic logic gate},
 language = {en},
 month = {May},
 number = {2},
 pages = {174--187},
 title = {Design and Analysis of a Robust Genetic Muller C-Element},
 volume = {264},
 year = {2010}
}


text:
SUMMARY = "A coroutine-based Python networking library"
DESCRIPTION = "gevent is a coroutine-based Python networking library that uses greenlet to provide \
a high-level synchronous API on top of the libevent event loop."
HOMEPAGE = "http://www.gevent.org"
LICENSE = "MIT & Python-2.0 & BSD"
LIC_FILES_CHKSUM = "file://LICENSE;md5=4de99aac27b470c29c6c309e0c279b65 \
                    file://NOTICE;md5=18108df3583462cafd457f024b9b09b5 \
                    file://deps/libev/LICENSE;md5=d6ad416afd040c90698edcdf1cbee347 \
                    "
DEPENDS += "libevent"
DEPENDS += "${PYTHON_PN}-greenlet"
RDEPENDS_${PN} = "${PYTHON_PN}-greenlet \
		  ${PYTHON_PN}-mime \
		  ${PYTHON_PN}-pprint \
		 "

FILESEXTRAPATHS_prepend := "${THISDIR}/python-gevent:"

SRC_URI_append = " \
    file://libev-conf.patch;patch=1;pnum=1 \
"

SRC_URI[sha256sum] = "520cc2a029a9eef436e4e56b007af7859315cafa21937d43c1d5269f12f2c981"

# The python-gevent has no autoreconf ability
# and the logic for detecting a cross compile is flawed
# so always force a cross compile
do_configure_append() {
	sed -i -e 's/^cross_compiling=no/cross_compiling=yes/' ${S}/deps/libev/configure
	sed -i -e 's/^cross_compiling=no/cross_compiling=yes/' ${S}/deps/c-ares/configure
}

inherit pypi setuptools3

repository: ni/meta-openembedded

repo_name: ni/meta-openembedded

branch_name: refs/heads/nilrt/master/hardknott


text:
%%% innovation.bib

@book{march_tech_inn_1997,
  title={Technological Innovation: Oversights and Foresights},
  author={March, J.G.},
  year={1997},
  publisher={Cambridge University Press}
}

@article{holmstrom_agency_inn_1989,
  title={Agency Costs and Innovation},
  author={Holmstrom, B.},
  journal={Journal of Economic Behavior \& Organization},
  volume={12},
  number={3},
  pages={305--327},
  year={1989}
}

@article{hayek_knowledge_1945,
  title={The Use of Knowledge in Society},
  author={Hayek, F.A.},
  journal={The American Economic Review},
  pages={519--530},
  year={1945}
}

@article{vonhippel_democratizing_2005,
  title={Democratizing Innovation: The Evolving Phenomenon of User Innovation},
  author={Von Hippel, E.},
  journal={Journal f{\"u}r Betriebswirtschaft},
  volume={55},
  number={1},
  pages={63--78},
  year={2005}
}

@article{lakhani_principles_2007,
  title={The Principles of Distributed Innovation},
  author={Lakhani, K.R. and Panetta, J.A.},
  journal={Innovations},
  volume={2},
  number={3},
  pages={97--112},
  year={2007}
}

@article{boudreau_incentives_2011,
  title={Incentives and Problem Uncertainty in Innovation Contests: An Empirical Analysis},
  author={Boudreau, K.J. and Lacetera, N. and Lakhani, K.R.},
  journal={Management Science},
  volume={57},
  number={5},
  pages={843--863},
  year={2011}
}

@article{vonkrogh_oss_special_2003,
  title={Special Issue on Open Source Software Development},
  author={von Krogh, G. and Von Hippel, E.},
  journal={Research Policy},
  volume={32},
  number={7},
  pages={1149--1157},
  year={2003}
}

@article{vonkrogh_community_2003,
  title={Community, Joining, and Specialization in Open Source Software Innovation: A Case Study},
  author={Von Krogh, G. and Spaeth, S. and Lakhani, K.R.},
  journal={Research Policy},
  volume={32},
  number={7},
  pages={1217--1241},
  year={2003}
}

@article{engel_pirates_2015,
  title={Who Is Afraid of Pirates? An Experiment on the Deterrence of Innovation by Imitation},
  author={Engel, C. and Kleine, M.},
  journal={Research Policy},
  volume={44},
  number={1},
  pages={20--33},
  year={2015}
}

@article{bruggemann_review_2016,
  title={Laboratory Experiments in Innovation Research: A Methodological Overview and a Review of the Current Literature},
  author={Br{\"u}ggemann, J. and Bizer, K.},
  journal={Journal of Innovation and Entrepreneurship},
  volume={5},
  number={1},
  pages={24},
  year={2016}
}

% Collaborative Initiatives

@article{kanefsky_craters_2001,
  title={Can Distributed Volunteers Accomplish Massive Data Analysis Tasks},
  author={Kanefsky, B. and Barlow, N.G. and Gulick, V.C.},
  journal={Lunar and Planetary Science},
  volume={1},
  year={2001}
}

@article{cooper_foldit_2010,
  title={Predicting Protein Structures with a Multiplayer Online Game},
  author={Cooper, S. and Khatib, F. and Treuille, A. and Barbero,
                  J. and Lee, J. and Beenen, M. and Leaver-Fay, A. and
                  Baker, D. and Popovi{\'c}, Z. and {Foldit players}},
  journal={Nature},
  volume={466},
  number={7307},
  pages={756--760},
  year={2010}
}

@article{peccoud_mit_parts_2008,
  title={Targeted Development of Registries of Biological Parts},
  author={Peccoud, J. and Blauvelt, M.F. and Cai, Y. and Cooper, K. L
                  and Crasta, O. and DeLalla, E. C and Evans, C. and
                  Folkerts, O. and Lyons, B. M and Mane, S.P. and
                  Shelton, R. and Sweede, M.A. and Waldon, S.A.},
  journal={PLoS One},
  volume={3},
  number={7},
  pages={e2671},
  year={2008}
}

@article{gowers_massive_math_2009,
    author = {Gowers, T. and Nielsen, M.},
    journal = {Nature},
    number = {7266},
    pages = {879--881},
    title = {Massively Collaborative Mathematics},
    volume = {461},
    keywords = {polymath},
    year = {2009}
}

@inproceedings{cranshaw_polymath_lessons_2011,
  title={The Polymath Project: Lessons from a Successful Online Collaboration in Mathematics},
  author={Cranshaw, J. and Kittur, A.},
  booktitle={Proceedings of the SIGCHI Conference on Human Factors in Computing Systems},
  pages={1865--1874},
  year={2011},
  organization={ACM}
}

@book{tapscott_wikinomics_2006,
    author = {Tapscott, D. and Williams, A.D.},
    publisher = {{Portfolio Hardcover}},
    title = {Wikinomics: How Mass Collaboration Changes Everything},
    year = {2006}
}

@article{ashburner_gene_ontology_2000,
  title={Gene Ontology: Tool for the Unification of Biology},
  author={Ashburner, M. and Ball, C. A and Blake, J.A. and Botstein,
                  D. and Butler, H. and Cherry, J.M. and Davis,
                  A.P. and Dolinski, K. and Dwight, S.S. and Eppig,
                  J.T. and Harris, M.A. Hill, D.P. and Issel-Tarver,
                  L. and Kasarskis, A. and Lewis, S. and Matese,
                  J.C. and Richardson, J.E. and Ringwald, M. and
                  Rubin, G.M. and Sherlock, G.},
  journal={Nature Genetics},
  volume={25},
  number={1},
  pages={25--29},
  year={2000}
}

@article{lintott_galaxyzoo_data1_2011,
  title={Galaxy Zoo 1: Data Release of Morphological Classifications for Nearly 900 000 Galaxies},
  author={Lintott, C. and Schawinski, K. and Bamford, S. and Slosar,
                  A. and Land, K. and Thomas, D. and Edmondson, E. and
                  Masters, K. and Nichol, R.C. and Raddick, M.J. and
                  Szalay, A. and Andreescu, D. and Murray, P. and
                  Vandenberg, J.},
  journal={Monthly Notices of the Royal Astronomical Society},
  volume={410},
  number={1},
  pages={166--178},
  year={2011}
}

@article{sullivan_ebird_2009,
  title={eBird: A Citizen-Based Bird Observation Network in the Biological Sciences},
  author={Sullivan, B.L. and Wood, C. L and Iliff, M.J. and Bonney, R.E. and Fink, D. and Kelling, S.},
  journal={Biological Conservation},
  volume={142},
  number={10},
  pages={2282--2292},
  year={2009}
}

@article{lee_eterna_collaborative_2014,
  title={RNA Design Rules from a Massive Open Laboratory},
  author={Lee, J. and Kladwang, W. and Lee, M. and Cantu, D. and Azizyan, M. and Kim, H. and Limpaecher, A. and Yoon, S. and Treuille, A. and Das, R.},
  journal={Proceedings of the National Academy of Sciences (PNAS)},
  volume={111},
  number={6},
  pages={2122--2127},
  year={2014}
}

@article{woelfle_openscience_2011,
  title={Open Science Is a Research Accelerator},
  author={Woelfle, M. and Olliaro, P. and Todd, M.H.},
  journal={Nature Chemistry},
  volume={3},
  number={10},
  pages={745--748},
  year={2011}
}

% Tech Reports

@techreport{krohmal_innovation_prizes_2008,
  title={Selected Innovation Prizes and Reward Programs},
  author={Krohmal, B. and Serafino, D. and Love, J. Ress, M. and Rius,
                  J. and Childs, M. and others},
  year={2013},
  institution={KEI Research},
  url={{http://www.keionline.org/misc-docs/research_notes/kei_rn_2008_1.pdf}}
}

% Online

@misc{kei_prizes_innovation,
  url = {http://keionline.org/content/view/170/1},
  title = {Selected Innovation Prizes and Reward Programs}
}

repository: shakty/socialbib

repo_name: shakty/socialbib