text:
SUMMARY = "Touchscreen calibration utility"

DESCRIPTION = "Basic touchscreen calibration utility"

HOMEPAGE = "http://gpe.linuxtogo.org"
BUGTRACKER = "http://bugs.linuxtogo.org"
LICENSE = "GPLv2 & GPLv2+"
LIC_FILES_CHKSUM = "file://COPYING;md5=94d55d512a9ba36caa9b7df079bae19f \
                    file://main.c;endline=10;md5=8721bcb08ae9f24e5fe4c82941873c87"

SECTION = "x11/base"

DEPENDS = "virtual/libx11 libxft libxcalibrate"

PR = "r13"

SRC_URI = "${GPE_MIRROR}/xtscal-${PV}.tar.bz2 \
           file://change-cross.patch \
           file://cleanup.patch \
           file://dso_linking_change_build_fix.patch \
           file://30xTs_Calibrate.sh"

SRC_URI[md5sum] = "9bcab80b474d5454477d1ca166a68c34"
SRC_URI[sha256sum] = "27b9dc2203de9b1706ca39fa6ca80ecab8807909ec901c4a345b8e41178800a1"

inherit autotools pkgconfig distro_features_check
# depends on virtual/libx11
REQUIRED_DISTRO_FEATURES = "x11"

do_install_append() {
    install -d ${D}${sysconfdir}/X11/Xsession.d/
    install -m 0755 ${WORKDIR}/30xTs_Calibrate.sh ${D}${sysconfdir}/X11/Xsession.d/
}

repository: astarche/meta-openembedded

repo_name: astarche/meta-openembedded

branch_name: refs/heads/nilrt/master/sumo

gha_license_id: MIT


text:
% Encoding: UTF-8

@inproceedings{bednarz2016virtual,
	Author = {Bednarz, Tomasz and Kim, June and Brown, Ross and James, Allan and Burrage, Kevin and Clifford, Sam and Davis, Jacqueline and Mengersen, Kerrie and Peterson, Erin and Psaltis, Steven and others},
	Booktitle = {Proceedings of the 21st International Conference on Web3D Technology},
	Date-Modified = {2017-11-06 10:44:58 +0000},
	Doi = {10.1145/2945292.2945319},
	Organization = {ACM},
	Pages = {177--178},
	Title = {Virtual reality for conservation},
	Url = {http://dl.acm.org/citation.cfm?id=2945319},
	Year = {2016},
	Bdsk-Url-1 = {http://dl.acm.org/citation.cfm?id=2945319}}

@conference{ntsydney,
	Author = {Buonanno, G. and Mazaheri, M. and Fuoco, F. and Clifford, S. and Russi, A. and Morawska, L. and Vigo, P. and Jayaratne, R. and Viola, A.},
	Booktitle = {12th Biennial National Conference},
	Organization = {Metrology Association of Australia},
	Owner = {cliffosj},
	Timestamp = {2013.10.29},
	Title = {{Alveolar dose comparison of ultrafine particles for Australian and Italian children}},
	Url = {https://geko.promeeting.it/abstract/DEF/Poster/3IEH_P052.pdf},
	Year = {2013},
	Bdsk-Url-1 = {https://eprints.qut.edu.au/62902/}}

@phdthesis{phdthesis,
	Author = {Sam Clifford},
	Owner = {n4431367},
	School = {School of Chemistry, Physics and Mechanical Engineering, Queensland University of Technology},
	Title = {Spatio-temporal modelling of ultrafine particle number concentration},
	Type = {Doctoral Thesis},
	Url = {https://eprints.qut.edu.au/63528/},
	Year = {2013},
	Bdsk-Url-1 = {https://eprints.qut.edu.au/63528/}}

@phdthesis{honours,
	Author = {Sam Clifford},
	Owner = {n4431367},
	School = {School of Mathematical Sciences, Queensland University of Technology},
	Timestamp = {2009.05.08},
	Title = {An analysis of shear-augmented dispersion with analytical and numerical methods},
	Type = {Honours Thesis},
	Year = {2008}}

@misc{isbaposter,
	Author = {Sam Clifford and Sama {Low Choy} and Kerrie Mengersen and Lidia Morawska},
	Howpublished = {Poster -- ISBA World Meeting},
	Month = {June},
	Owner = {n4431367},
	Timestamp = {2012.07.06},
	Title = {Semi-parametric modelling of ultrafine particle number concentration},
	Url = {https://eprints.qut.edu.au/54100/},
	Year = {2012},
	Bdsk-Url-1 = {https://eprints.qut.edu.au/54100/}}

@misc{bnpposter,
	Author = {Sam Clifford and Sama {Low Choy} and Kerrie Mengersen and Lidia Morawska},
	Howpublished = {Poster -- 8th {Workshop on Bayesian Non-parametrics}},
	Month = {June},
	Owner = {n4431367},
	Timestamp = {2011.08.29},
	Title = {Semi-parametric modelling of ultrafine particle number concentration},
	Year = {2011}}

@article{Clifford2011,
	Author = {Sam Clifford and Sama {{Low Choy}} and Tareq Hussein and Kerrie Mengersen and Lidia Morawska},
	Issn = {1352-2310},
	Journal = {Atmospheric Environment},
	Number = {32},
	Owner = {n4431367},
	Pages = {5934-5945},
	Timestamp = {2011.05.20},
	Title = {Using the Generalised Additive Model to model the Particle Number Count of ultrafine particles},
	Url = {http://www.sciencedirect.com/science/article/pii/S1352231011004766},
	Volume = {45},
	Year = {2011},
	Doi = {10.1016/j.atmosenv.2011.05.004},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S1352231011004766}}

@inbook{bayesiansplineschapter,
	Author = {Sam Clifford and Sama {{{Low Choy}}}},
	Chapter = {12, ``Bayesian Splines''},
	Editor = {Clair Alston and Kerrie Mengersen},
	Owner = {n4431367},
	Pages = {197-220},
	Publisher = {Wiley},
	Series = {Wiley Series in Probability and Statistics},
	Timestamp = {2011.08.29},
	Title = {Case Studies in {Bayesian} Statistical Modelling and Analysis},
	Url = {http://au.wiley.com/WileyCDA/WileyTitle/productCd-1119941822.html},
	Year = {2012},
	Bdsk-Url-1 = {http://au.wiley.com/WileyCDA/WileyTitle/productCd-1119941822.html}}

@article{paper2,
	Author = {Sam Clifford and Sama {{{Low Choy}}} and Mandana Mazaheri and Farhad Salimi and Kerrie Mengersen and Lidia Morawska},
	Journal = {arXiv},
	Month = {February},
	Number = {1206.3833},
	Owner = {n4431367},
	Timestamp = {2011.05.27},
	Title = {A {Bayesian} spatio-temporal model of panel design data: particle number concentration in {Brisbane, Australia}},
	Url = {http://arxiv.org/abs/1206.3833},
	Year = {2013},
	Bdsk-Url-1 = {http://arxiv.org/abs/1206.3833}}

@article{paper3,
	Author = {Sam Clifford and Sama {{{Low Choy}}} and Mandana Mazaheri and Farhad Salimi and Kerrie Mengersen and Lidia Morawska},
	Owner = {n4431367},
	Timestamp = {2011.05.27},
	Title = {A {Bayesian} multi-site model of particle number concentration in {Brisbane}, {Australia}},
	Year = {2012}}

@article{paper4,
	Author = {Sam Clifford and Sama {{{Low Choy}}} and Kerrie Mengersen and Lidia Morawska},
	Owner = {n4431367},
	Timestamp = {2011.05.27},
	Title = {Semi-parametric spatio-temporal modelling of ultrafine particle number concentration in {Brisbane}, {Australia}, with a stochastic {PDE}},
	Year = {2012}}

@article{finlandpaper,
	Author = {Sam Clifford and Bjarke M{\o}lgaard and Jukka Corander and Kaarle H\"{a}meri and Sama {{{Low Choy}}} and Kerrie Mengersen and Tareq Hussein},
	Journal = {arXiv},
	Month = {September},
	Number = {1207.0558},
	Owner = {n4431367},
	Timestamp = {2011.08.29},
	Title = {Bayesian semi-parametric forecasting of particle number concentration: penalised splines and autoregressive errors},
	Url = {http://arxiv.org/abs/1207.0558},
	Year = {2012},
	Bdsk-Url-1 = {http://arxiv.org/abs/1207.0558}}

@article{emacpaper,
	Author = {Sam Clifford and Mandana Mazaheri and E. R. Jayaratne and M. A. {Megat Mokhtar} and F. Fuoco and G. Buonanno and L. Morawska},
	Journal = {ANZIAM Journal},
	Owner = {cliffosj},
	Pages = {C437-C447},
	Timestamp = {2014.02.10},
	Title = {Estimation of inhaled ultrafine particle surface area dose in urban environments},
	Url = {http://journal.austms.org.au/ojs/index.php/ANZIAMJ/article/view/7819},
	Volume = {55},
	Year = {2014},
	Doi = {10.21914/anziamj.v55i0.7819},
	Bdsk-Url-1 = {http://journal.austms.org.au/ojs/index.php/ANZIAMJ/article/view/7819}}

@conference{emactalk,
	Author = {Sam Clifford and Mandana Mazaheri and E. R. Jayaratne and M. A. {Megat Mokhtar} and F. Fuoco and G. Buonanno and L. Morawska},
	Booktitle = {Engineering Mathematics and Applications Conference},
	Month = {December},
	Organization = {Australian Mathematical Society (Australian and New Zealand Industrian and Applied Mathematics)},
	Owner = {cliffosj},
	Timestamp = {2014.02.10},
	Title = {Estimation of inhaled ultrafine particle surface area dose in urban environments},
	Year = {2013}}

@inproceedings{clustering,
           pages = {775--777},
           title = {A method for non-parametric cluster analysis of the health impacts of air quality},
         address = {Brisbane, QLD},
            year = {2012},
          author = {Samuel Clifford and Mandana Mazaheri and Kerrie Mengersen and Lidia Morawska},
       booktitle = {10th International Conference on Healthy Buildings 2012},
       publisher = {ISIAQ},
             url = {https://eprints.qut.edu.au/109192/},
        abstract = {The effects of air quality on the health of school-children are known to be affected by other covariates. The most popular statistical models used for determining these effects are Poisson regressions (Mej{\'i}a et al., 2010). Rather than model random effects at the school level we propose to model at the student level and to allow for the identification of groups of students who may have similar probabilities of a particular health outcome. We propose the use of a Dirichlet Process mixture of Generalised Linear Models (GLM) to probabilistically allocate students to groups for modelling random effects (MacEachern and M{\"u}ller, 1998).}
}

@misc{eacclifford,
	Author = {S. Clifford and M. Mazaheri and B. Yeganeh and K. Mengersen and G. Marks and L. Morawska},
	Howpublished = {Poster -- European Aerosol Conference},
	Month = {September},
	Owner = {clisam},
	Timestamp = {2015.08.20},
	Title = {Uncertainty in exposure estimates and imputation of missing aerosol data in an epidemiological study},
	Year = {2015}}

@unpublished{herdsa2016,
	Author = {Iwona Czaplinski and Sam Clifford and Ruth Luscombe and Brett Fyfield},
	Keywords = {blended learning, mathematics, statistics, first year, STEM},
	Month = {July},
	Title = {A blended learning model for first year science student engagement with mathematics and statistics},
	Url = {http://eprints.qut.edu.au/96972/},
	Year = {2016},
	Bdsk-Url-1 = {http://eprints.qut.edu.au/96972/}}

@article{ezz2015,
	Author = {Wafaa Nabil Ezz and Mandana Mazaheri and Paul Robinson and Graeme Johnson and Sam Clifford and Congrong He and Lidia Morawska and Guy B. Marks},
	Journal = {International Journal of Environmental Research and Public Health},
	Number = {2},
	Owner = {cliffosj},
	Pages = {1687-1702},
	Timestamp = {2014.08.26},
	Title = {Ultrafine particles from traffic emissions and children's health},
	Url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344688/},
	Volume = {12},
	Year = {2015},
	Doi = {10.3390/ijerph120201687},
	Bdsk-Url-1 = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344688/}}

@article{ehsan,
	Author = {Ehsan Majd Faghihi and Darren Martin and Samuel Clifford and Grant Edwards and Congrong He and Christof Asbachc and Lidia Morawska},
	Journal = {Aerosol and Air Quality Research},
	Number = {2},
	Owner = {cliffosj},
	Doi = {10.4209/aaqr.2014.06.0124},
	Pages = {365-375},
	Timestamp = {2014.02.10},
	Title = {Are there generalisable trends in the release of airborne synthetic clay nanoparticles from a jet milling process?},
	Url = {http://www.aaqr.org/article/detail/AAQR-14-06-OA-0124},
	Volume = {15},
	Year = {2015},
	Bdsk-Url-1 = {http://www.aaqr.org/article/detail/AAQR-14-06-OA-0124}}

@article{falcao2016influence,
	Author = {Falc{\~a}o, L and Clifford, Sam and Mazaheri, Mandana and Broday, David and Morawska, Lidia},
	Title = {The influence of meteorology of indoor {PM$_{2.5}$} concentration: Application of advanced modelling techniques},
	Year = {2016}}

@article{falk,
	Author = {M. G. Falk and C. L. Alston and C. A. McGrory and S. Clifford and E. A. Heron and D. Leonte and M. Moores and C. D. Walsh and A. N. Pettitt and K. L. Mengersen},
	Journal = {Environmental and Ecological Statistics},
	Number = {3},
	Owner = {n4431367},
	Pages = {571-600},
	Timestamp = {2012.12.07},
	Title = {Recent Bayesian Approaches for Spatial Analysis of {2-D} Images with Application to Environmental Modelling},
	Url = {https://link.springer.com/article/10.1007%2Fs10651-015-0311-1},
	Volume = {22},
	Doi = {10.1007/s10651-015-0311-1},
	Year = {2015},
	Bdsk-Url-1 = {https://link.springer.com/article/10.1007%2Fs10651-015-0311-1}}

@article{rohanpm10,
	Author = {E. R. Jayaratne and S. Clifford and L. Morawska},
	Journal = {Environmental Science \& Technology},
	Number = {21},
	Owner = {clisam},
	Pages = {12751-12757},
	Timestamp = {2015.08.20},
	Title = {Atmospheric Visibility and {PM$_{10}$} as Indicators of New Particle Formation in an Urban Environment},
	Url = {http://pubs.acs.org/doi/abs/10.1021/acs.est.5b01851},
	Volume = {49},
	Year = {2015},
	Doi = {10.1021/acs.est.5b01851},
	Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/acs.est.5b01851}}

@conference{jayanAAC,
	Address = {Kanazawa, Japan},
	Author = {Jayan Karunasinghe and Luke Knibbs and Sam Cliford and Lidia Morawaska},
	Booktitle = {Asian Aerosol Conference},
	Month = {June},
	Owner = {cliffosj},
	Timestamp = {2015.10.07},
	Title = {Land use regression model for ultrafine particles in {Brisbane}},
	Year = {2015}}

@article{16years,
	Author = {Luke D. Knibbs and Sam Clifford and Kerrie Mengersen and Lidia Morawska},
	Journal = {in prep},
	Owner = {n4431367},
	Timestamp = {2011.09.14},
	Year = {2012}}

@article{rusdinAER,
	Author = {Rusdin Laiman and Congrong He and Sam Clifford and Farhad Salimi and Leigh Crilley and Megat Azman Megat Mokhtar and Mandana Mazaheri and Lidia Morawska},
	Journal = {Atmospheric Environment},
	Owner = {cliffosj},
	Pages = {28-35},
	Timestamp = {2013.12.04},
	Title = {Characteristics of ultrafine particle sources and deposition rates in primary school classrooms},
	Url = {http://www.sciencedirect.com/science/article/pii/S1352231014003604},
	Volume = {94},
	Year = {2014},
	Doi = {10.1016/j.atmosenv.2014.05.013},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S1352231014003604}}

@article{rusdinpaper1,
	Author = {R. Laiman and C. He and M. Mazaheri and S. Clifford and F. Salimi and L. Crilley, M. A. {Megat Moktar} and L. Morawska},
	Journal = {Atmospheric Environment},
	Owner = {cliffosj},
	Timestamp = {2013.10.22},
	Title = {The effect of outdoor sources on indoor particle concentrations in primary schools},
	Year = {submitted}}

@article{molgaard2013,
	Author = {Bjarke M{\o}lgaard and Wolfram Birmili and Sam Clifford and Andreas Massling and Kostas Eleftheriadis and Michael Norman and Stergios Vratolis and Birgit Wehner and Jukka Corander and Kaarle H\"{a}meri and Tareq Hussein},
	Journal = {Journal of Aerosol Science},
	Owner = {n4431367},
	Pages = {96-110},
	Timestamp = {2012.11.27},
	Title = {Evaluation of a statistical forecast model for size-fractionated urban particle number concentrations using data from five European cities},
	Url = {http://www.sciencedirect.com/science/article/pii/S0021850213001833},
	Volume = {66},
	Year = {2013},
	Doi = {10.1016/j.jaerosci.2013.08.012},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0021850213001833}}

@article{mandanantpaper,
	Author = {Mandana Mazaheri and Sam Clifford and Rohan Jayaratne and {Megat Azman} {Megat Mokhtar} and Fernanda Fuoco and Giorgio Buonanno and Lidia Morawska},
	Journal = {Environmental Science and Technology},
	Number = {1},
	Owner = {n4431367},
	Pages = {113-120},
	Timestamp = {2012.11.27},
	Title = {School children's personal exposure to ultrafine particles in the urban environment},
	Url = {http://pubs.acs.org/doi/abs/10.1021/es403721w},
	Doi ={10.1021/es403721w},
	Volume = {48},
	Year = {2014},
	Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/es403721w}}

@misc{eacmazaheri,
	Author = {M. Mazaheri and S. Clifford and L. Morawska},
	Howpublished = {Poster -- European Aerosol Conference},
	Month = {September},
	Owner = {clisam},
	Timestamp = {2015.08.20},
	Url = {https://eprints.qut.edu.au/84565/},
	Title = {Inhaled particle surface area dose: stationary vs personal monitoring},
	Year = {2015}}

@article{mcgarry2016application,
	Author = {McGarry, Peter and Clifford, Sam and Knibbs, Luke D and He, Congrong and Morawska, Lidia},
	Journal = {Journal of occupational and environmental hygiene},
	Number = {10},
	Pages = {D175--D197},
	Publisher = {Taylor \& Francis},
	Title = {Application of multi-metric approach to characterization of particle emissions from nanotechnology and non-nanotechnology processes},
	Url = {http://www.tandfonline.com/doi/full/10.1080/15459624.2016.1200194},
	Volume = {13},
	Year = {2016},
	Doi = {10.1080/15459624.2016.1200194},
	Bdsk-Url-1 = {http://www.tandfonline.com/doi/full/10.1080/15459624.2016.1200194}}

@article{jaguarspatial,
	Author = {Mengersen, Kerrie and Peterson, Erin E. and Clifford, Samuel and Ye, Nan and Kim, June and Bednarz, Tomasz and Brown, Ross and James, Allan and Vercelloni, Julie and Pearse, Alan R. and Davis, Jacqueline and Hunter, Vanessa},
	Issn = {1099-095X},
	Journal = {Environmetrics},
	Keywords = {compound-imperfect observations, conservation, false presences, jaguar, presence-only data, species distribution models},
	Note = {e2446 env.2446},
	Number = {5},
	Publisher = {Wiley},
	Title = {Modelling imperfect presence data obtained by citizen science},
	Url = {http://onlinelibrary.wiley.com/doi/10.1002/env.2446/full},
	Doi = {10.1002/env.2446/},
	Volume = {28},
	Year = {2017},
	Bdsk-Url-1 = {http://onlinelibrary.wiley.com/doi/10.1002/env.2446/full}}

@inproceedings{uptechIA2014,
	Address = {Hong Kong},
	Author = {Morawska, L. and Mazaheri, M. and Clifford, S. and Salimi, F. and Laiman, R. and Crilley, L},
	Booktitle = {Indoor Air},
	Month = {July},
	Owner = {cliffosj},
	Timestamp = {2015.10.07},
	Title = {Indoor air pollution sources and exposures in primary schools: {UPTECH Synthesis} .},
	Year = {2014}}

@article{rahman2017estimate,
	Author = {Rahman, M. M. and Mazaheri, Mandana and Clifford, Sam and Morawska, Lidia},
	Journal = {Atmospheric Research},
	Pages = {178-189},
	Publisher = {Elsevier},
	Title = {Estimate of main local sources to ambient ultrafine particle number concentrations in an urban area},
	Url = {http://www.sciencedirect.com/science/article/pii/S0169809516303684},
	Volume = {194},
	Year = {2017},
	Doi = {10.1016/j.atmosres.2017.04.036},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0169809516303684}}

@article{rahman2017nox,
	Author = {Rahman, M. M. and Yeganeh, Bijan and Clifford, Sam and Knibbs, Luke and Morawska, Lidia},
	Url = {http://www.sciencedirect.com/science/article/pii/S1364815216305114?via%3Dihub},
	Journal = {Environmental Modelling and Software},
	Pages = {168-179},
	Doi = {10.1016/j.envsoft.2017.06.029},
	Title = {Development of a land use regression model for daily {NO}$_2$ and {NO}$_x$ concentrations in the {Brisbane metropolitan area, Australia}},
	Volume = {95},
	Year = {2017}}

@misc{eacrahman,
	Author = {M. M. Rahman and M. Mazaheri and S. Clifford and L. Morawska.},
	Howpublished = {Poster -- European Aerosol Conference},
	Month = {September},
	Owner = {clisam},
	Timestamp = {2015.08.20},
	Title = {Characterisation and sources of ultrafine particles in an inner city urban area},
	Year = {2015}}

@article{rivas2017identification,
	Author = {Rivas, Ioar and Mazaheri, Mandana and Viana, Mar and Moreno, Teresa and Clifford, Samuel and He, Congrong and Bischof, Oliver F and Martins, V{\^a}nia and Reche, Cristina and Alastuey, Andr{\'e}s and others},
	Journal = {Science of The Total Environment},
	Pages = {849--855},
	Publisher = {Elsevier},
	Title = {Identification of technical problems affecting performance of DustTrak DRX aerosol monitors},
	Url = {http://www.sciencedirect.com/science/article/pii/S0048969717301390},
	Volume = {584},
	Year = {2017},
	Doi = {10.1016/j.scitotenv.2017.01.129},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0048969717301390}}

@article{farhadpaper,
	Author = {F. Salimi and M. Mazaheri and S. Clifford and L. Crilley and R. Laiman and L. Morawska},
	Journal = {Environmental Science and Technology},
	Number = {10},
	Owner = {n4431367},
	Pages = {5251-5258},
	Timestamp = {2012.11.27},
	Title = {Spatial variation of particle number concentration in school microscale environments and its impact on exposure assessment},
	Doi = {10.1021/es400041r},
	Url = {http://pubs.acs.org/doi/abs/10.1021/es400041r},
	Volume = {47},
	Year = {2013},
	Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/es400041r}}

@article{salimi2017nocturnal,
	Author = {Salimi, Farhad and Rahman, Md and Clifford, Sam and Ristovski, Zoran and Morawska, Lidia and others},
	Journal = {Atmospheric Chemistry and Physics},
	Number = {1},
	Pages = {521--530},
	Publisher = {Copernicus GmbH},
	Title = {Nocturnal new particle formation events in urban environments},
	Url = {http://www.atmos-chem-phys.net/17/521/2017/},
	Volume = {17},
	Doi = {10.5194/acp-17-521-2017},
	Year = {2017},
	Bdsk-Url-1 = {http://www.atmos-chem-phys.net/17/521/2017/}}

@article{farhadcluster,
	Author = {F. Salimi and Z. Ristovski and M. Mazaheri and R. Laiman and L. Crilley and C. He and S. Clifford and L. Morawska},
	Journal = {Atmospheric Chemistry and Physics},
	Owner = {n4431367},
	Pages = {15257-15281},
	Timestamp = {2013.05.23},
	Title = {Assessment and Application of Clustering Techniques to Atmospheric Particle Number Size Distribution for the Purpose of Source Apportionment},
	Url = {http://www.atmos-chem-phys.net/14/11883/2014/},
	Volume = {14},
	Year = {2014},
	Doi = {10.5194/acp-14-11883-2014},
	Bdsk-Url-1 = {http://www.atmos-chem-phys.net/14/11883/2014/}}

@article{salonen2016endotoxin,
	Author = {Salonen, Heidi and Duchaine, Caroline and L{\'e}tourneau, Val{\'e}rie and Mazaheri, Mandana and Laitinen, Sirpa and Clifford, Sam and Mikkola, Raimo and Lappalainen, Sanna and Reijula, Kari and Morawska, Lidia},
	Journal = {Atmospheric Environment},
	Pages = {360--369},
	Publisher = {Pergamon},
	Title = {Endotoxin levels and contribution factors of endotoxins in resident, school, and office environments --- A review},
	Url = {http://www.sciencedirect.com/science/article/pii/S1352231016306124},
	Volume = {142},
	Year = {2016},
	Doi = {10.1016/j.atmosenv.2016.08.018},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S1352231016306124}}

@article{endotoxin,
	Author = {Heidi Salonen and Caroline Duchaine and Val\'erie L\'etourneau and Mandana Mazaheri and Sam Clifford and Lidia Morawska},
	Journal = {Environmental Science and Technology},
	Number = {17},
	Owner = {n4431367},
	Pages = {9882-9890},
	Timestamp = {2013.05.23},
	Title = {Endotoxins in indoor air and settled dust in primary schools in subtropical climate},
	Url = {http://pubs.acs.org/doi/abs/10.1021/es4023706},
	Volume = {47},
	Doi = {0.1021/es4023706},
	Year = {2013},
	Bdsk-Url-1 = {http://pubs.acs.org/doi/abs/10.1021/es4023706}}

@article{fungireview,
	Author = {Salonen, Heidi and C. Duchaine and M. Mazaheri and S. Clifford and S. Lappalainen and K. Reijula and L. Morawska},
	Journal = {Atmospheric Environment},
	Owner = {cliffosj},
	Pages = {186-194},
	Timestamp = {2014.08.26},
	Title = {Airborne viable fungi in school environments in different climatic regions - a review},
	Url = {http://www.sciencedirect.com/science/article/pii/S135223101500014X},
	Volume = {104},
	Doi = {10.1016/j.atmosenv.2015.01.012},
	Year = {2015},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S135223101500014X}}

@article{salonen2014,
	Author = {Salonen, Heidi and Caroline Duchaine and Mandana Mazaheri and Sam Clifford and Lidia Morawska},
	Journal = {Atmospheric Environment},
	Owner = {cliffosj},
	Pages = {412-418},
	Timestamp = {2014.08.26},
	Title = {Airborne culturable fungi in naturally ventilated primary school environments in a subtropical climate},
	Url = {http://www.sciencedirect.com/science/article/pii/S1352231014005822},
	Volume = {106},
	Year = {2015},
	Doi = {10.1016/j.atmosenv.2014.07.052},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S1352231014005822}}

@article{salthammer2016children,
	Author = {Salthammer, Tunga and Uhde, Erik and Schripp, Tobias and Schieweck, Alexandra and Morawska, Lidia and Mazaheri, Mandana and Clifford, Sam and He, Congrong and Buonanno, Giorgio and Querol, Xavier and others},
	Journal = {Environment International},
	Pages = {196--210},
	Publisher = {Pergamon},
	Title = {Children's well-being at schools: impact of climatic conditions and air pollution},
	Url = {http://www.sciencedirect.com/science/article/pii/S0160412016301829},
	Volume = {94},
	Year = {2016},
	Doi ={10.1016/j.envint.2016.05.009},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0160412016301829}}

@article{thermodenuder,
	Author = {S. Stevanovic and B. Miljevic and P. Madl and S. Clifford and Z. Ristovski},
	Journal = {Aerosol and Air Quality Research},
	Number = {1},
	Owner = {n4431367},
	Pages = {357-363},
	Timestamp = {2012.08.06},
	Title = {Characterisation of a commercially available thermodenuder and diffusion drier for ultrafine particles losses},
	Url = {http://www.aaqr.org/article/detail/AAQR-13-12-TN-0355},
	Volume = {15},
	Doi ={10.4209/aaqr.2013.12.0355},
	Year = {2015},
	Bdsk-Url-1 = {http://www.aaqr.org/article/detail/AAQR-13-12-TN-0355}}

@article{PBDEs,
	Author = {L. Toms and M. Mazaheri and S. Brommer and S. Clifford and D. Drage and J. Mueller and P. Thai and S. Harrad and L. Morawska and F. Harden},
	Journal = {Environmental Research},
	Owner = {cliffosj},
	Pages = {135-140},
	Timestamp = {2014.01.30},
	Title = {Brominated flame retardants in primary schools: sources and exposures},
	Url = {http://www.sciencedirect.com/science/article/pii/S0013935115001826},
	Volume = {142},
	Year = {2015},
	Doi = {10.1016/j.envres.2015.06.007},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0013935115001826}}

@article{tenzin1,
	Author = {T. Wangchuk and M. Mazaheri and S. Clifford and M. Dudzinska and C. He and G. Buonanno and L. Morawska},
	Journal = {Environmental Research},
	Owner = {clisam},
	Pages = {691-698},
	Timestamp = {2015.08.20},
	Title = {Children's personal exposure to air pollution in rural villages in {Bhutan}},
	Url = {http://www.sciencedirect.com/science/article/pii/S0013935115001814},
	Volume = {140},
	Year = {2015},
	Doi = {10.1016/j.envres.2015.06.006},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0013935115001814}}

@article{yeganeh2017satellite,
	Author = {Yeganeh, Bijan and Hewson, Michael G and Clifford, Samuel and Knibbs, Luke D and Morawska, Lidia},
	Doi = {10.1016/j.envsoft.2016.11.017},
	Journal = {Environmental Modelling \& Software},
	Pages = {84--92},
	Publisher = {Elsevier},
	Title = {A satellite-based model for estimating {PM$_{2.5}$} concentration in a sparsely populated environment using soft computing techniques},
	Url = {http://www.sciencedirect.com/science/article/pii/S1364815216309483},
	Volume = {88},
	Year = {2017},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S1364815216309483}}

@article{zoe2017ofmdpm,
	Author = {{van Havre}, Zo{\'e} and White, Nicole and Rousseau, Judith and Clifford, Sam and Mengersen, Kerrie},
	Journal = {Australia and New Zealand Journal of Statistics},
	Title = {Clustering action potential spikes: insights on the use of overfitted finite mixture models and {Dirichlet} process mixture models},
	Volume = {under review},
	Year = {2017}}

@article{reefaesthetics,
	Author = {Vercelloni, Julie and Clifford, Sam and Pearse, Alan R and Brown, Ross and James, Allan and Christensen, Bryce and Bednarz, Tomasz and Anthony, Kenneth and Gonz{\'a}lez-Rivero, Manuel and Caley, Julian and Mengersen, Kerrie and Peterson, Erin E},
	Journal = {Nature Scientific Reports},
	Title = {Understanding aesthetic attributes of coral-reefs: using virtual reality to support conservation of ecosystem services},
	Volume = {submitted},
	Year = {2017}}

@article{MORAWSKA201775,
	Author = {L. Morawska and G.A. Ayoko and G.N. Bae and G. Buonanno and C.Y.H. Chao and S. Clifford and S.C. Fu and O. H{\"a}nninen and C. He and C. Isaxon and M. Mazaheri and T. Salthammer and M.S. Waring and A. Wierzbicka},
	Doi = {10.1016/j.envint.2017.07.025},
	Issn = {0160-4120},
	Journal = {Environment International},
	Keywords = {Indoor particulate matter, Indoor aerosols, Indoor ultrafine particles, Home indoor particles, School indoor particles, Office indoor particles, Child care indoor particles, Aged care indoor particles},
	Number = {Supplement C},
	Pages = {75 - 83},
	Title = {Airborne particles in indoor environment of homes, schools, offices and aged care facilities: The main routes of exposure},
	Url = {http://www.sciencedirect.com/science/article/pii/S0160412017306840},
	Volume = {108},
	Year = {2017},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0160412017306840},
	Bdsk-Url-2 = {https://doi.org/10.1016/j.envint.2017.07.025}}

@article{uptechmain,
	Author = {Sam Clifford and Mandana Mazaheri and Farhad Salimi and Wafaa Nabil Ezz and Bijan Yeganeh and Samantha Low Choy and Katy Walker and Kerrie Mengersen and Guy B. Marks and Lidia Morawska},
	Journal = {Environment International},
	Title = {Effects of exposure to ambient ultrafine particles on respiratory health and systemic inflammation in children},
	Year = {2018}}

@article{colinbrt,
Author = {Colin, B. and Clifford, S. and Wu, P. and Rathmanner, S. and Mengersen, K},
Title = {Using Boosted Regression Trees and Remotely Sensed Data to Drive Decision-Making},
Journal = {Open Journal of Statistics},
Volume = {7},
Pages = {859-875},
Year = {2017},
Doi = {10.4236/ojs.2017.75061}
}

@Article{reefmain,
  author = {Sam Clifford and others},
  title  = {Combining citizen science and traditional monitoring data in modelling coral cover on the {Great Barrier Reef}},
  year   = {in prep},
}

@article{AGARWAL2014131,
title = "Classroom-based programs of retrieval practice reduce middle school and high school students' test anxiety",
journal = "Journal of Applied Research in Memory and Cognition",
volume = "3",
number = "3",
pages = "131 - 139",
year = "2014",
note = "Cognition and Education",
issn = "2211-3681",
doi = "https://doi.org/10.1016/j.jarmac.2014.07.002",
url = "http://www.sciencedirect.com/science/article/pii/S221136811400059X",
author = "Pooja K. Agarwal and Laura D'Antonio and Henry L. Roediger and Kathleen B. McDermott and Mark A. McDaniel",
keywords = "Retrieval practice, Study strategies, Test anxiety, Middle school, High school, Teaching"
}

@article{ENDRES201713,
title = "Enhancing learning by retrieval: Enriching free recall with elaborative prompting",
journal = "Learning and Instruction",
volume = "49",
pages = "13 - 20",
year = "2017",
issn = "0959-4752",
doi = "https://doi.org/10.1016/j.learninstruc.2016.11.010",
url = "http://www.sciencedirect.com/science/article/pii/S0959475216302547",
author = "Tino Endres and Shana Carpenter and Alf Martin and Alexander Renkl",
keywords = "Learning by retrieval, Retrieval practice, Elaborative retrieval, Learning journals, Learning strategies, Testing effect"
}

@article{nguyen2015,
author = {Khuyen Nguyen and Mark A. McDaniel},
title ={Using Quizzing to Assist Student Learning in the Classroom: The Good, the Bad, and the Ugly},
journal = {Teaching of Psychology},
volume = {42},
number = {1},
pages = {87-92},
year = {2015},
doi = {10.1177/0098628314562685},

URL = {
        https://doi.org/10.1177/0098628314562685

},
eprint = {
        https://doi.org/10.1177/0098628314562685

}
,
    abstract = { Recently, the testing effect has received a great deal of attention from researchers and educators who are intrigued by its potential to enhance student learning in the classroom. However, effective incorporation of testing (as a learning tool) merits a close examination of the conditions under which testing can enhance student learning in an authentic classroom setting, where a number of factors may deviate from the laboratory. Based on existing evidence, we highlight several studies that encompass a few of the complexities of using testing to enhance course performance, including situations in which quizzing is beneficial for summative test performance, contexts in which quizzing does not appear to be as beneficial, and instances in which quizzing may actually hamper final test performance. }
}

@article{annis,
 ISSN = {00031305},
 URL = {http://www.jstor.org/stable/27643703},
 abstract = {Box's paper helicopter has been used to teach experimental design for more than a decade. It is simple, inexpensive, and provides real data for an involved, multifactor experiment. Unfortunately it can also further an all-too-common practice that Professor Box himself has repeatedly cautioned against, namely ignoring the fundamental science while rushing to solve problems that may not be sufficiently understood. Often this slighting of the science so as to get on with the statistics is justified by referring to Box's oft-quoted maxim that "All models are wrong, however some are useful." Nevertheless, what is equally true, to paraphrase both Professor Box and George Orwell, is that "All models are wrong, but some are more wrong than others." To experiment effectively it is necessary to understand the relevant science so as to distinguish between what is usefully wrong, and what is dangerously wrong. This article presents an improved analysis of Box's helicopter problem relying on statistical and engineering knowledge and shows that this leads to an enhanced paper helicopter, requiring fewer experimental trails and achieving superior performance. In fact, of the 20 experimental trials run for validation-10 each of the proposed aerodynamic design and the conventional full factorial optimum-the longest 10 flight times all belong to the aerodynamic optimum, while the shortest 10 all belong to the conventional full factorial optimum. I further discuss how ancillary engineering knowledge can be incorporated into thinking about-and teaching-experimental design.},
 author = {David H. Annis},
 journal = {The American Statistician},
 number = {4},
 pages = {320-326},
 publisher = {[American Statistical Association, Taylor & Francis, Ltd.]},
 title = {Rethinking the Paper Helicopter: Comnining Statistical and Engineering Knowledge},
 volume = {59},
 year = {2005}
}

@Comment{jabref-meta: databaseType:bibtex;}

license: MIT

repository: samclifford/hugo-blog

license_type: permissive

repo_name: samclifford/hugo-blog

branch_name: refs/heads/master

extension: bib


text:
@inproceedings{kunze2019conveying,
 author = {Kunze, Alexander and Summerskill, Stephen J and Marshall, Russell and Filtness, Ashleigh J},
 booktitle = {Proceedings of the 11th International Conference on Automotive User Interfaces and Interactive Vehicular Applications},
 pages = {329--341},
 title = {Conveying Uncertainties Using Peripheral Awareness Displays in the Context of Automated Driving},
 year = {2019}
}

license: Unlicense,MIT

detected_licenses: Unlicense MIT

gha_license_id: NOASSERTION


text:
% Encoding: UTF-8

@article{mosteller_1987,
 author = {Frederick Mosteller},
 journal = {Proceedings of the American Philosophical Society},
 number = {2},
 pages = {132--140},
 publisher = {American Philosophical Society},
 title = {A Statistical Study of the Writing Styles of the Authors of "The Federalist" Papers},
 volume = {131},
 year = {1987}
}

branch_name: refs/heads/main


text:
@article{10.3758/s13423-012-0227-9,
  title = {Too Good to Be True: {{Publication}} Bias in Two Prominent Studies from Experimental Psychology},
  volume = {19},
  shorttitle = {Too Good to Be True},
  doi = {10.3758/s13423-012-0227-9},
  timestamp = {2017-04-16T14:36:56Z},
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  journal = {Psychonomic Bulletin \& Review},
  author = {Francis, Gregory},
  year = {2012},
  pages = {151--156},
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@article{10.1016/j.socec.2004.09.033,
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}

@article{10.1007/s11192-010-0233-5,
  title = {Worsening File-Drawer Problem in the Abstracts of Natural, Medical and Social Science Databases},
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}

@article{10.1093/biostatistics/kxt032,
  title = {Discussion: {{An}} Estimate of the Science-Wise False Discovery Rate and Applications to Top Medical Journals by {{Jager}} and {{Leek}}},
  volume = {15},
  shorttitle = {Discussion},
  doi = {10.1093/biostatistics/kxt032},
  timestamp = {2017-04-16T14:36:41Z},
  number = {1},
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  author = {Benjamini, Y. and Hechtlinger, Y.},
  year = {2013},
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}

@article{10.1371/journal.pone.0105825,
  title = {Publication {{Bias}} in {{Psychology}}: {{A Diagnosis Based}} on the {{Correlation}} between {{Effect Size}} and {{Sample Size}}},
  volume = {9},
  shorttitle = {Publication {{Bias}} in {{Psychology}}},
  doi = {10.1371/journal.pone.0105825},
  timestamp = {2017-04-16T14:40:18Z},
  number = {9},
  journal = {PLoS ONE},
  author = {K{\"u}hberger, Anton and Fritz, Astrid and Scherndl, Thomas},
  year = {2014},
  pages = {e105825},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\RR27FTPZ\\search.crossref.org.html:text/html}
}

@article{10.7717/peerj.1142,
  title = {On the Challenges of Drawing Conclusions From p-Values Just below 0.05},
  volume = {3},
  doi = {10.7717/peerj.1142},
  timestamp = {2017-04-16T14:40:32Z},
  journal = {PeerJ},
  author = {Lakens, Dani{\"e}l},
  year = {2015},
  pages = {e1142},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\XT2B47T5\\search.crossref.org.html:text/html}
}

@article{10.1080/19312458.2015.1096333,
  title = {Blinded by the {{Light}}: {{How}} a {{Focus}} on {{Statistical}} ``{{Significance}}'' {{May Cause p}}-{{Value Misreporting}} and an {{Excess}} Of p-{{Values Just Below}} .05 in {{Communication Science}}},
  volume = {9},
  shorttitle = {Blinded by the {{Light}}},
  doi = {10.1080/19312458.2015.1096333},
  timestamp = {2017-04-16T14:41:34Z},
  number = {4},
  journal = {Communication Methods and Measures},
  author = {Vermeulen, Ivar and Beukeboom, Camiel J. and Batenburg, Anika and Avramiea, Arthur and Stoyanov, Dimo and van de Velde, Bob and Oegema, Dirk},
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}

@article{10.1080/17470218.2014.982664,
  title = {What P-Hacking Really Looks like: {{A}} Comment on {{Masicampo}} and {{LaLande}} (2012)},
  volume = {68},
  shorttitle = {Whatp-Hacking Really Looks Like},
  doi = {10.1080/17470218.2014.982664},
  timestamp = {2017-04-16T14:40:25Z},
  number = {4},
  journal = {The Quarterly Journal of Experimental Psychology},
  author = {Lakens, Dani{\"e}l},
  year = {2014},
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  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\UTZWQCKG\\search.crossref.org.html:text/html}
}

@article{10.1007/s11192-011-0494-7,
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  author = {Fanelli, Daniele},
  year = {2011},
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}

@article{10.1177/0956797611417632,
  title = {False-{{Positive Psychology}}},
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  number = {11},
  journal = {Psychological Science},
  author = {Simmons, Joseph P. and Nelson, Leif D. and Simonsohn, Uri},
  year = {2011},
  pages = {1359--1366},
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}

@article{10.1093/biostatistics/kxt035,
  title = {Discussion: {{An}} Estimate of the Science-Wise False Discovery Rate and Application to the Top Medical Literature},
  volume = {15},
  shorttitle = {Discussion},
  doi = {10.1093/biostatistics/kxt035},
  timestamp = {2017-04-16T14:37:13Z},
  number = {1},
  journal = {Biostatistics},
  author = {Goodman, S. N.},
  year = {2013},
  pages = {23--27},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\THRZMJDK\\search.crossref.org.html:text/html}
}

@article{10.1093/biostatistics/kxt007,
  title = {An Estimate of the Science-Wise False Discovery Rate and Application to the Top Medical Literature},
  volume = {15},
  doi = {10.1093/biostatistics/kxt007},
  timestamp = {2017-04-16T14:40:10Z},
  number = {1},
  journal = {Biostatistics},
  author = {Jager, L. R. and Leek, J. T.},
  year = {2013},
  pages = {1--12},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\9GSZ2CWJ\\search.crossref.org.html:text/html}
}

@article{10.3758/s13428-011-0089-5,
  title = {The (Mis)Reporting of Statistical Results in Psychology Journals},
  volume = {43},
  doi = {10.3758/s13428-011-0089-5},
  timestamp = {2017-04-16T14:36:31Z},
  number = {3},
  journal = {Behavior Research Methods},
  author = {Bakker, Marjan and Wicherts, Jelte M.},
  year = {2011},
  pages = {666--678},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\3NDBT3SI\\search.crossref.org.html:text/html}
}

@article{10.3389/fpsyg.2016.01832,
  title = {Degrees of {{Freedom}} in {{Planning}}, {{Running}}, {{Analyzing}}, and {{Reporting Psychological Studies}}: {{A Checklist}} to {{Avoid}} p-{{Hacking}}},
  volume = {7},
  shorttitle = {Degrees of {{Freedom}} in {{Planning}}, {{Running}}, {{Analyzing}}, and {{Reporting Psychological Studies}}},
  doi = {10.3389/fpsyg.2016.01832},
  timestamp = {2017-04-16T14:41:41Z},
  journal = {Frontiers in Psychology},
  author = {Wicherts, Jelte M. and Veldkamp, Coosje L. S. and Augusteijn, Hilde E. M. and Bakker, Marjan and van Aert, Robbie C. M. and van Assen, Marcel A. L. M.},
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}

@article{10.7717/peerj.1935,
  title = {Distributions of P-Values Smaller than .05 in Psychology: What Is Going On?},
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  shorttitle = {Distributions Ofp-Values Smaller than .05 in Psychology},
  doi = {10.7717/peerj.1935},
  timestamp = {2017-04-16T14:55:51Z},
  journal = {PeerJ},
  author = {Hartgerink, Chris H.J. and Hartgerink, Chris H. J. and van Aert, Robbie C. M. and Nuijten, Mich{\`e}le B. and Wicherts, Jelte M. and van Assen, Marcel A. L. M.},
  year = {2016},
  pages = {e1935},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\CEJBTMVS\\search.crossref.org.html:text/html}
}

@article{10.1525/collabra.71,
  title = {Too {{Good}} to Be {{False}}: {{Nonsignificant Results Revisited}}},
  volume = {3},
  shorttitle = {Too {{Good}} to Be {{False}}},
  doi = {10.1525/collabra.71},
  timestamp = {2017-04-16T14:39:45Z},
  number = {1},
  journal = {Collabra: Psychology},
  author = {Hartgerink, Chris H. J. and Wicherts, J. M. and Assen, M. A. L. M. Van},
  year = {2017},
  pages = {9},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\4ZMI85E8\\search.crossref.org.html:text/html}
}

@article{10.1371/journal.pmed.0020124,
  title = {Why {{Most Published Research Findings Are False}}},
  volume = {2},
  doi = {10.1371/journal.pmed.0020124},
  timestamp = {2017-04-16T14:40:04Z},
  number = {8},
  journal = {PLoS Medicine},
  author = {Ioannidis, John P. A.},
  year = {2005},
  pages = {e124},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\GIMECE3A\\search.crossref.org.html:text/html}
}

@article{10.3758/s13428-015-0664-2,
  title = {The Prevalence of Statistical Reporting Errors in Psychology (1985\textendash{}2013)},
  volume = {48},
  doi = {10.3758/s13428-015-0664-2},
  timestamp = {2017-05-05T12:45:51Z},
  number = {4},
  journal = {Behavior Research Methods},
  author = {Nuijten, Mich{\`e}le B. and Hartgerink, Chris H. J. and van Assen, Marcel A. L. M. and Epskamp, Sacha and Wicherts, Jelte M.},
  year = {2015},
  pages = {1205--1226},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\DVRHZ42Z\\search.crossref.org.html:text/html}
}

@article{10.1177/0956797616645672,
  title = {Marginally {{Significant Effects}} as {{Evidence}} for {{Hypotheses}}},
  volume = {27},
  doi = {10.1177/0956797616645672},
  timestamp = {2017-04-16T14:41:14Z},
  number = {7},
  journal = {Psychological Science},
  author = {Pritschet, Laura and Powell, Derek and Horne, Zachary},
  year = {2016},
  pages = {1036--1042},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\6P2A7D32\\search.crossref.org.html:text/html}
}

@article{10.7717/peerj.3068,
  title = {Reanalyzing {{Head}} et Al. (2015): Investigating the Robustness of Widespread p-Hacking},
  volume = {5},
  shorttitle = {Reanalyzing {{Head}} et Al. (2015)},
  doi = {10.7717/peerj.3068},
  timestamp = {2017-04-16T14:38:21Z},
  journal = {PeerJ},
  author = {Hartgerink, Chris H.J.},
  year = {2017},
  pages = {e3068},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\2I7BQ593\\search.crossref.org.html:text/html}
}

@article{10.1198/000313001300339950,
  title = {Calibration of $\rho$ {{Values}} for {{Testing Precise Null Hypotheses}}},
  volume = {55},
  doi = {10.1198/000313001300339950},
  timestamp = {2017-04-16T14:41:20Z},
  number = {1},
  journal = {The American Statistician},
  author = {Sellke, Thomas and Bayarri, M. J. and Berger, James O.},
  year = {2001},
  pages = {62--71},
  file = {Crossref Metadata Search:C\:\\Users\\Anton2\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\zqjgbndi.default\\zotero\\storage\\H7U362W6\\search.crossref.org.html:text/html}
}

@article{10.3390/data1030014,
  title = {688,112 {{Statistical Results}}: {{Content Mining Psychology Articles}} for {{Statistical Test Results}}},
  volume = {1},
  copyright = {http://creativecommons.org/licenses/by/3.0/},
  shorttitle = {688,112 {{Statistical Results}}},
  doi = {10.3390/data1030014},
  abstract = {In this data deposit, I describe a dataset that is the result of content mining 167,318 published articles for statistical test results reported according to the standards prescribed by the American Psychological Association (APA). Articles published by the APA, Springer, Sage, and Taylor \& Francis were included (mining from Wiley and Elsevier was actively blocked). As a result of this content mining, 688,112 results from 50,845 articles were extracted. In order to provide a comprehensive set of data, the statistical results are supplemented with metadata from the article they originate from. The dataset is provided in a comma separated file (CSV) in long-format. For each of the 688,112 results, 20 variables are included, of which seven are article metadata and 13 pertain to the individual statistical results (e.g., reported and recalculated p-value). A five-pronged approach was taken to generate the dataset: (i) collect journal lists; (ii) spider journal pages for articles; (iii) download articles; (iv) add article metadata; and (v) mine articles for statistical results. All materials, scripts, etc. are available at https://github.com/chartgerink/2016statcheck\_data and preserved at http://dx.doi.org/10.5281/zenodo.59818.},
  language = {en},
  timestamp = {2017-05-02T12:07:56Z},
  number = {3},
  urldate = {2017-05-02},
  journal = {Data},
  author = {Hartgerink, Chris H. J.},
  month = sep,
  year = {2016},
  keywords = {<i>p</i>-values,content mining,errors,mining,psychology,statistics},
  pages = {14}
}

@misc{APAjournals,
  title = {Browse {{Journals}} and {{Special Issues}}},
  abstract = {Search journals published by APA and special issues of those journals by journal title, special issue title or topic.},
  timestamp = {2017-05-24T11:44:27Z},
  urldate = {2017-05-24},
  howpublished = {\url{Retrieved from http://www.apa.org/pubs/journals/browse.aspx?query=subject\&type=journal}},
  year = {n.d.},
  note = {APAjournals}
}

@Manual{rcrossref,
  title = {rcrossref: Client for Various 'CrossRef' APIs},
  author = {Scott Chamberlain and Carl Boettiger and Ted Hart and Karthik Ram},
  year = {2016},
  note = {R package version 0.6.0},
  url = {https://CRAN.R-project.org/package=rcrossref},
}

@Manual{Rref,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2017},
  url = {https://www.R-project.org/},
}

@article{10.1177/0956797611430953,
  title = {Measuring the Prevalence of Questionable Research Practices with Incentives for Truth Telling},
  volume = {23},
  issn = {1467-9280},
  doi = {10.1177/0956797611430953},
  abstract = {Cases of clear scientific misconduct have received significant media attention recently, but less flagrantly questionable research practices may be more prevalent and, ultimately, more damaging to the academic enterprise. Using an anonymous elicitation format supplemented by incentives for honest reporting, we surveyed over 2,000 psychologists about their involvement in questionable research practices. The impact of truth-telling incentives on self-admissions of questionable research practices was positive, and this impact was greater for practices that respondents judged to be less defensible. Combining three different estimation methods, we found that the percentage of respondents who have engaged in questionable practices was surprisingly high. This finding suggests that some questionable practices may constitute the prevailing research norm.},
  language = {eng},
  timestamp = {2017-07-28T15:19:35Z},
  number = {5},
  journal = {Psychological Science},
  author = {John, Leslie K. and Loewenstein, George and Prelec, Drazen},
  month = may,
  year = {2012},
  keywords = {Data Collection,Humans,Motivation,psychology,Research,Scientific Misconduct,Truth Disclosure},
  pages = {524--532},
  pmid = {22508865}
}

@article{10.7717/peerj.3544,
 title = {The earth is flat (\textit{p} > 0.05): significance thresholds and the crisis of unreplicable research},
 author = {Amrhein, Valentin and Korner-Nievergelt, Fränzi and Roth, Tobias},
 year = 2017,
 month = jul,
 keywords = {P-value, Significant, Nonsignificant, Threshold, Publication bias, Truth inflation, Winner’s curse, Reproducibility, Replicability, Graded evidence},
 abstract = {
            The widespread use of ‘statistical significance’ as a license for making a claim of a scientific finding leads to considerable distortion of the scientific process (according to the American Statistical Association). We review why degrading \textit{p}-values into ‘significant’ and ‘nonsignificant’ contributes to making studies irreproducible, or to making them seem irreproducible. A major problem is that we tend to take small \textit{p}-values at face value, but mistrust results with larger \textit{p}-values. In either case, \textit{p}-values tell little about reliability of research, because they are hardly replicable even if an alternative hypothesis is true. Also significance (\textit{p} ≤ 0.05) is hardly replicable: at a good statistical power of 80%, two studies will be ‘conflicting’, meaning that one is significant and the other is not, in one third of the cases if there is a true effect. A replication can therefore not be interpreted as having failed only because it is nonsignificant. Many apparent replication failures may thus reflect faulty judgment based on significance thresholds rather than a crisis of unreplicable research. Reliable conclusions on replicability and practical importance of a finding can only be drawn using cumulative evidence from multiple independent studies. However, applying significance thresholds makes cumulative knowledge unreliable. One reason is that with anything but ideal statistical power, significant effect sizes will be biased upwards. Interpreting inflated significant results while ignoring nonsignificant results will thus lead to wrong conclusions. But current incentives to hunt for significance lead to selective reporting and to publication bias against nonsignificant findings. Data dredging, \textit{p}-hacking, and publication bias should be addressed by removing fixed significance thresholds. Consistent with the recommendations of the late Ronald Fisher, \textit{p}-values should be interpreted as graded measures of the strength of evidence against the null hypothesis. Also larger \textit{p}-values offer some evidence against the null hypothesis, and they cannot be interpreted as supporting the null hypothesis, falsely concluding that ‘there is no effect’. Information on possible true effect sizes that are compatible with the data must be obtained from the point estimate, e.g., from a sample average, and from the interval estimate, such as a confidence interval. We review how confusion about interpretation of larger \textit{p}-values can be traced back to historical disputes among the founders of modern statistics. We further discuss potential arguments against removing significance thresholds, for example that decision rules should rather be more stringent, that sample sizes could decrease, or that \textit{p}-values should better be completely abandoned. We conclude that whatever method of statistical inference we use, dichotomous threshold thinking must give way to non-automated informed judgment.
         },
 volume = 5,
 pages = {e3544},
 journal = {PeerJ},
 issn = {2167-8359},
 url = {https://doi.org/10.7717/peerj.3544},
 doi = {10.7717/peerj.3544}
}

@misc{osf.io/preprints/psyarxiv/mky9j,
  title = {Redefine Statistical Significance},
  timestamp = {2017-07-29T20:27:22Z},
  urldate = {2017-07-28},
  howpublished = {\url{Retrieved from https://osf.io/preprints/psyarxiv/mky9j/}},
  author = {Benjamin, D. J. and Berger, J. and Johannesson, M. and Nosek, B. A. and Wagenmakers, E.-J. and Berk, R. and \ldots{} and Johnson, V.},
  year = {2017, July 22}
}

@misc{Hankins,
  title = {Still Not Significant [blog post]},
  abstract = {What to do if your p-value is just over the arbitrary threshold for `significance' of p=0.05? You don't need to play the significance testing game \textendash{} there are better methods\ldots{}},
  timestamp = {2017-07-29T20:39:52Z},
  urldate = {2017-07-29},
  howpublished = {\url{Retrieved from https://mchankins.wordpress.com/2013/04/21/still-not-significant-2/}},
  author = {Hankins, Matthew},
  year = {2013, April 21},
  note = {Hankins}
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2017},
  url = {https://www.R-project.org/},
}
@Manual{R-papaja,
  author = {Frederik Aust and Marius Barth},
  title = {{papaja}: {Create} {APA} manuscripts with {R Markdown}},
  year = {2017},
  note = {R package version 0.1.0.9492},
  url = {https://github.com/crsh/papaja},
}
@Manual{R-gdata,
  title = {gdata: Various R Programming Tools for Data Manipulation},
  author = {Gregory R. Warnes and Ben Bolker and Gregor Gorjanc and Gabor Grothendieck and Ales Korosec and Thomas Lumley and Don MacQueen and Arni Magnusson and Jim Rogers and {others}},
  year = {2017},
  note = {R package version 2.18.0},
  url = {https://CRAN.R-project.org/package=gdata},
}
@Book{R-ggplot2,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2009},
  isbn = {978-0-387-98140-6},
  url = {http://ggplot2.org},
}
@Article{R-plyr,
  title = {The Split-Apply-Combine Strategy for Data Analysis},
  author = {Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {1},
  pages = {1--29},
  url = {http://www.jstatsoft.org/v40/i01/},
}
@Manual{R-scales,
  title = {scales: Scale Functions for Visualization},
  author = {Hadley Wickham},
  year = {2016},
  note = {R package version 0.4.1},
  url = {https://CRAN.R-project.org/package=scales},
}
@Manual{R-viridis,
  title = {viridis: Default Color Maps from 'matplotlib'},
  author = {Simon Garnier},
  year = {2017},
  note = {R package version 0.4.0},
  url = {https://CRAN.R-project.org/package=viridis},
}
@Manual{R-viridisLite,
  title = {viridisLite: Default Color Maps from 'matplotlib' (Lite Version)},
  author = {Simon Garnier},
  year = {2017},
  note = {R package version 0.2.0},
  url = {https://CRAN.R-project.org/package=viridisLite},
}
@Book{R-knitr,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {http://yihui.name/knitr/},
}

@article{10.1511/2014.111.460,
  title = {The {{Statistical Crisis}} in {{Science}}},
  volume = {102},
  doi = {10.1511/2014.111.460},
  timestamp = {2017-07-31T19:04:51Z},
  number = {6},
  journal = {American Scientist},
  author = {Gelman, Andrew and Loken, Eric},
  year = {2014},
  pages = {460}
}

@article{10.7717/peerj.1935,
  title = {Distributions of P-Values Smaller than .05 in Psychology: What Is Going On?},
  volume = {4},
  doi = {10.7717/peerj.1935},
  shorttitle = {Distributions Ofp-Values Smaller than .05 in Psychology},
  timestamp = {2017-04-16T14:55:51Z},
  journaltitle = {PeerJ},
  author = {Hartgerink, Chris H.J. and Hartgerink, Chris H. J. and van Aert, Robbie C. M. and Nuijten, Michèle B. and Wicherts, Jelte M. and van Assen, Marcel A. L. M.},
  date = {2016},
  pages = {e1935},
  file = {Crossref Metadata Search:C\:\\Users\\Anton\\AppData\\Roaming\\Mozilla\\Firefox\\Profiles\\rbpy42iz.default\\zotero\\storage\\CEJBTMVS\\search.crossref.org.html:text/html}
}


text:
@Article{Atkinson1994,
  Title                    = {Temperature and organism size: a biological law for ectotherms?},
  Author                   = {Atkinson, D},
  Journal                  = {Advances in ecological research},
  Year                     = {1994},
  Pages                    = {1--1},
  Volume                   = {25},

  Publisher                = {Academic Press}
}
@Article{Barry1995,
  Title                    = {Climate-related, long-term faunal changes in a California rocky intertidal community},
  Author                   = {Barry, James P and Baxter, Chuck H and Sagarin, Rafe D and Gilman, Sarah E},
  Journal                  = {Science(Washington)},
  Year                     = {1995},
  Number                   = {5198},
  Pages                    = {672--675},
  Volume                   = {267}
}
@Book{Burnham2002,
  Title                    = {Model selection and multimodel inference: a practical information-theoretic approach},
  Author                   = {Burnham, Kenneth P and Anderson, David R},
  Publisher                = {Springer Science \& Business Media},
  Year                     = {2002}
}
@Article{Caruso2014,
  Title                    = {Widespread rapid reductions in body size of adult salamanders in response to climate change},
  Author                   = {Caruso, Nicholas M and Sears, Michael W and Adams, Dean C and Lips, Karen R},
  Journal                  = {Global change biology},
  Year                     = {2014},
  Number                   = {6},
  Pages                    = {1751--1759},
  Volume                   = {20},

  Publisher                = {Wiley Online Library}
}
@Manual{Childs1947,
  Title                    = {Studies on \textit{Littorina planaxis}},
  Author                   = {H E Childs},
  Organization             = {Zoology S112},
  Year                     = {1947},

  Owner                    = {elahi},
  School                   = {Stanford University},
  Timestamp                = {2015.11.16},
  Volume                   = {206}
}
@Article{Daufresne2009,
  Title                    = {Global warming benefits the small in aquatic ecosystems},
  Author                   = {Daufresne, Martin and Lengfellner, Kathrin and Sommer, Ulrich},
  Journal                  = {Proceedings of the National Academy of Sciences},
  Year                     = {2009},
  Number                   = {31},
  Pages                    = {12788--12793},
  Volume                   = {106},

  Publisher                = {National Acad Sciences}
}
@Article{Erlandson2011,
  Title                    = {10,000 years of human predation and size changes in the owl limpet (\textit{Lottia gigantea}) on San Miguel Island, California},
  Author                   = {Erlandson, Jon M and Braje, Todd J and Rick, Torben C and Jew, Nicholas P and Kennett, Douglas J and Dwyer, Nicole and Ainis, Amira F and Vellanoweth, Ren{\'e} L and Watts, Jack},
  Journal                  = {Journal of Archaeological Science},
  Year                     = {2011},
  Number                   = {5},
  Pages                    = {1127--1134},
  Volume                   = {38},

  Publisher                = {Elsevier}
}
@Article{Gardner2011,
  Title                    = {Declining body size: a third universal response to warming? },
  Author                   = {Janet L. Gardner and Anne Peters and Michael R. Kearney and Leo Joseph and Robert Heinsohn},
  Journal                  = {Trends in Ecology \& Evolution },
  Year                     = {2011},
  Number                   = {6},
  Pages                    = {285 - 291},
  Volume                   = {26},

  Abstract                 = {A recently documented correlate of anthropogenic climate change involves reductions in body size, the nature and scale of the pattern leading to suggestions of a third universal response to climate warming. Because body size affects thermoregulation and energetics, changing body size has implications for resilience in the face of climate change. A review of recent studies shows heterogeneity in the magnitude and direction of size responses, exposing a need for large-scale phylogenetically controlled comparative analyses of temporal size change. Integrative analyses of museum data combined with new theoretical models of size-dependent thermoregulatory and metabolic responses will increase both understanding of the underlying mechanisms and physiological consequences of size shifts and, therefore, the ability to predict the sensitivities of species to climate change.},
  Doi                      = {http://dx.doi.org/10.1016/j.tree.2011.03.005},
  ISSN                     = {0169-5347},
  Owner                    = {elahi},
  Timestamp                = {2015.11.10},
  Url                      = {http://www.sciencedirect.com/science/article/pii/S0169534711000759}
}
@Manual{Hexter1950,
  Title                    = {The relationship of size to distribution and sex in \textit{Acmaea digitalis}},
  Author                   = {X X Hexter},
  Organization             = {S112},
  Year                     = {1950},

  Owner                    = {elahi},
  School                   = {Stanford University},
  Timestamp                = {2015.11.16},
  Volume                   = {20_XXXX___}
}
@PhdThesis{Hunt2006,
  Title                    = {The rise of \textit{Endocladia muricata}: punctuated change at an abrupt range edge},
  Author                   = {Hunt, Luke John Hoot},
  School                   = {Stanford University},
  Year                     = {2006},

  Publisher                = {ProQuest}
}
@Article{James1970,
  Title                    = {Geographic size variation in birds and its relationship to climate},
  Author                   = {James, Frances C},
  Journal                  = {Ecology},
  Year                     = {1970},
  Pages                    = {365--390},

  Publisher                = {JSTOR}
}
@Article{McKechnie2009,
  Title                    = {Climate change increases the likelihood of catastrophic avian mortality events during extreme heat waves},
  Author                   = {McKechnie, Andrew E and Wolf, Blair O},
  Journal                  = {Biology Letters},
  Year                     = {2009},
  Pages                    = {rsbl20090702},

  Publisher                = {The Royal Society}
}
@Misc{pinheiro2013package,
  Title                    = {Package ‘nlme’},

  Author                   = {Pinheiro, Jos{\'e} and Bates, Douglas and Maintainer, R and Hmisc, Suggests},
  Year                     = {2013}
}
@Manual{RCT2015,
  Title                    = {R: A Language and Environment for Statistical Computing},

  Address                  = {Vienna, Austria},
  Author                   = {{R Core Team}},
  Organization             = {R Foundation for Statistical Computing},
  Year                     = {2015},

  Url                      = {https://www.R-project.org/}
}
@Article{Ray1960,
  Title                    = {The application of Bergmann's and Allen's rules to the poikilotherms},
  Author                   = {Ray, Carleton},
  Journal                  = {Journal of Morphology},
  Year                     = {1960},
  Number                   = {1},
  Pages                    = {85--108},
  Volume                   = {106},

  Publisher                = {Wiley Online Library}
}
@Article{Roy2003,
  Title                    = {Anthropogenic impacts and historical decline in body size of rocky intertidal gastropods in southern California},
  Author                   = {Roy, Kaustuv and Collins, Allen G and Becker, Bonnie J and Begovic, Emina and Engle, John M},
  Journal                  = {Ecology Letters},
  Year                     = {2003},
  Number                   = {3},
  Pages                    = {205--211},
  Volume                   = {6},

  Publisher                = {Wiley Online Library}
}
@Article{Salo1989,
  Title                    = {Fish predation and reduction in body size in a Cladoceran population: palaeoecological evidence},
  Author                   = {Salo, Juka and Walls, Mari and Rajasilta, Marjut and Sarvala, Jouko and Räsänen, Matti and Salonen, Veli-Pekka},
  Journal                  = {Freshwater Biology},
  Year                     = {1989},
  Number                   = {2},
  Pages                    = {217--221},
  Volume                   = {21},

  Abstract                 = {SUMMARY. 1 We studied the recent history (1852-1982) of Lake Pyhä-järvi, south-west Finland, using both cladoceran microfossils and independent historical data. The objective of the study was to assess the impact of introduced planktivorous whitefish Coregonus lavaretus s.1. on zooplankton, especially on the main prey species Bosmina coregoni Baird s.str.2. A size-frequency analysis of carapace remains preserved in the sediments clearly shows a size shift in a Bosmina coregoni population. The carapace length of B. coregoni decreased by 11.0% after the introduction of the size-selective planktivorous whitefish, indicating a parallel body-size reduction.3.During the study period no changes could be found in the carapace length of Chydorus sphaericus O. F. Müller, which was not preyed upon.},
  Doi                      = {10.1111/j.1365-2427.1989.tb01360.x},
  ISSN                     = {1365-2427},
  Publisher                = {Blackwell Publishing Ltd},
  Url                      = {http://dx.doi.org/10.1111/j.1365-2427.1989.tb01360.x}
}
@Article{Sheridan2011,
  Title                    = {Shrinking body size as an ecological response to climate change},
  Author                   = {Sheridan, Jennifer A and Bickford, David},
  Journal                  = {Nature climate change},
  Year                     = {2011},
  Number                   = {8},
  Pages                    = {401--406},
  Volume                   = {1},

  Publisher                = {Nature Publishing Group}
}
@Article{Wara1964,
  Title                    = {The distribution and movement of \textit{Tegula funebralis} in the intertidal region of Monterey Bay, California},
  Author                   = {Wara, William M and Wright, Benjamin B},
  Journal                  = {The Veliger},
  Year                     = {1964}
}
@Article{Yom-Tov2001,
  Title                    = {Global warming and body mass decline in Israeli passerine birds},
  Author                   = {Yom-Tov, Yoram},
  Journal                  = {Proceedings of the Royal Society of London B: Biological Sciences},
  Year                     = {2001},
  Number                   = {1470},
  Pages                    = {947--952},
  Volume                   = {268},

  Publisher                = {The Royal Society}
}


text:
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    IF(NOT TARGET ${lib})
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      ENDIF()
    ENDIF()
  ENDFOREACH()

  SET (PLUS_ITK_DIR ${ITK_DIR} CACHE INTERNAL "Path to store itk binaries")
ELSE()
  # ITK has not been built yet, so download and build it as an external project
  SET (ITKv4_REPOSITORY ${GIT_PROTOCOL}://itk.org/ITK.git)
  SET (ITKv4_GIT_TAG v4.10.0)

  SET(itk_common_cxx_flags "${ep_common_cxx_flags} -std=c++11")
  IF(MSVC)
    SET(itk_common_cxx_flags "${itk_common_cxx_flags} /MP ")
  ENDIF()

  SET (PLUS_ITK_SRC_DIR "${CMAKE_BINARY_DIR}/Deps/itk")
  SET (PLUS_ITK_DIR "${CMAKE_BINARY_DIR}/Deps/itk-bin" CACHE INTERNAL "Path to store itk binaries")
  ExternalProject_Add( itk
    "${PLUSBUILD_EXTERNAL_PROJECT_CUSTOM_COMMANDS}"
    PREFIX "${CMAKE_BINARY_DIR}/Deps/itk-prefix"
    SOURCE_DIR "${PLUS_ITK_SRC_DIR}"
    BINARY_DIR "${PLUS_ITK_DIR}"
    #--Download step--------------
    GIT_REPOSITORY "${ITKv4_REPOSITORY}"
    GIT_TAG "${ITKv4_GIT_TAG}"
    #--Configure step-------------
    CMAKE_ARGS
      ${ep_common_args}
      -DCMAKE_RUNTIME_OUTPUT_DIRECTORY:PATH=${PLUS_EXECUTABLE_OUTPUT_PATH}
      -DCMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=${PLUS_EXECUTABLE_OUTPUT_PATH}
      -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${PLUS_EXECUTABLE_OUTPUT_PATH}
      -DBUILD_SHARED_LIBS:BOOL=${PLUSBUILD_BUILD_SHARED_LIBS}
      -DBUILD_TESTING:BOOL=OFF
      -DBUILD_EXAMPLES:BOOL=OFF
      -DITK_LEGACY_REMOVE:BOOL=ON
      -DKWSYS_USE_MD5:BOOL=ON
      -DITK_USE_REVIEW:BOOL=ON
      -DCMAKE_CXX_FLAGS:STRING=${itk_common_cxx_flags}
      -DCMAKE_C_FLAGS:STRING=${ep_common_c_flags}
    #--Build step-----------------
    BUILD_ALWAYS 1
    #--Install step-----------------
    INSTALL_COMMAND ""
    DEPENDS ${ITK_DEPENDENCIES}
    )
ENDIF()

extension: cmake


text:
DESCRIPTION = "Motion - a motion detection program"
HOMEPAGE = "http://www.lavrsen.dk/twiki/bin/view/Motion/WebHome"
AUTHOR = "Kenneth Lavrsen motion-user@lists.sourceforge.net"
PRIORITY = "optional"
LICENSE = "GPL"
DEPENDS = "jpeg ffmpeg mysql postgresql"

RSUGGESTS_${PN} = "mysql-client postgresql-client"

PR = "r2"

SRC_URI = "${SOURCEFORGE_MIRROR}/${PN}/${PN}-${PV}.tar.gz \
           file://ffmpeg-0.4.9.15594svn-20081010.diff "

inherit autotools

EXTRA_OECONF = " --with-ffmpeg=${STAGING_LIBDIR}/../ \
                 --with-mysql-lib=${STAGING_LIBDIR} \
                 --with-mysql-include=${STAGING_INCDIR}/mysql \
                 --with-pgsql-lib=${STAGING_LIBDIR} \
                 --with-pgsql-include=${STAGING_INCDIR} "

SRC_URI[md5sum] = "3a26c00f3250eacf6fa93c7a7e0249d9"
SRC_URI[sha256sum] = "f1e187c61702a727bbd20bf5a66a310363257acc04b1f1c6e0b2e06e9b5dfa6e"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD

extension: bb


text:
DESCRIPTION = "Matchbox window manager extra themes"
LICENSE = "GPL"
DEPENDS = "matchbox-wm"
SECTION = "x11/wm"

SRC_URI = "http://projects.o-hand.com/matchbox/sources/matchbox-themes-extra/${PV}/matchbox-themes-extra-${PV}.tar.bz2"
S = "${WORKDIR}/matchbox-themes-extra-${PV}"

PR = "r1"
PACKAGE_ARCH = "all"

inherit autotools  pkgconfig

# split into several packages plus one meta package
PACKAGES = "${PN}-dbg ${PN} ${PN}-industrial ${PN}-expose ${PN}-mbcrystal"

ALLOW_EMPTY_${PN} = "1"
FILES_${PN} = ""
RDEPENDS_${PN} = "${PN}-industrial ${PN}-expose ${PN}-mbcrystal"

FILES_${PN}-industrial = "${datadir}/themes/Industrial \
			  ${datadir}/icons/Industrial"

FILES_${PN}-expose = "${datadir}/themes/expose \
		      ${datadir}/icons/expose"

FILES_${PN}-mbcrystal = "${datadir}/themes/mbcrystal \
			 ${datadir}/icons/mbcrystal"

SRC_URI[md5sum] = "04312628f4a21f4105bce1251ea08035"
SRC_URI[sha256sum] = "98a1c8695842b0cd7f32e67b0ef9118fd0f32db5297f3f08706c706dee8fc6be"


text:
@article{RN890,
 author = {Lim, C. J. and Cheng, A. C. and Kennon, J. and Spelman, D. and Hale, D. and Melican, G. and Sidjabat, H. E. and Paterson, D. L. and Kong, D. C. M. and Peleg, A. Y.},
 doi = {10.1093/jac/dku077},
 journal = {Journal of Antimicrobial Chemotherapy},
 number = {7},
 pages = {1972-1980},
 title = {Prevalence of multidrug-resistant organisms and risk factors for carriage in long-term care facilities: A nested case-control study},
 type = {Journal Article},
 url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84902439907&doi=10.1093%2fjac%2fdku077&partnerID=40&md5=90d230b45f5794530c463d2ceef8c4c9
http://jac.oxfordjournals.org/content/69/7/1972.full.pdf},
 volume = {69},
 year = {2014}
}


text:
@InProceedings{Reid15,
  author = {Reid, Mark D. and Frongillo, Rafael M. and Williamson, Robert C. and Mehta, Nishant},
  title = {Generalized Mixability via Entropic Duality},
  pages = {1501-1522},
  abstract = {Mixability is a property of a loss which characterizes when constant regret is possible in the game of prediction with expert advice. We show that a key property of mixability generalizes, and the $\exp$ and $\log$ operations present in the usual theory are not as special as one might have thought.  In doing so we introduce a more general notion of $\Phi$-mixability where $\Phi$ is a general entropy (\emph{i.e.}, any convex function on probabilities). We show how a property shared by the convex dual of any such entropy yields a natural algorithm (the minimizer of a regret bound) which, analogous to the classical Aggregating Algorithm, is guaranteed a constant regret when used with $\Phi$-mixable losses.  We characterize which $\Phi$ have non-trivial $\Phi$-mixable losses and relate $\Phi$-mixability and its associated Aggregating Algorithm to potential-based methods, a Blackwell-like condition, mirror descent, and risk measures from finance.  We also define a notion of ``dominance'' between different entropies in terms of bounds they guarantee and conjecture that classical mixability gives optimal bounds, for which we provide some supporting empirical evidence.},
}

repository: mreid/papersite

repo_name: mreid/papersite

gha_language: TeX


text:
@article{Salk-2021-Warming,
    title = "Warming combined with experimental eutrophication intensifies lake phytoplankton blooms",
    author = "Salk, Kateri R.  and
      Venkiteswaran, Jason J.  and
      Couture, Raoul‐Marie  and
      Higgins, Scott N.  and
      Paterson, Michael J.  and
      Schiff, Sherry L.",
    journal = "Limnology and Oceanography, Volume 67, Issue 1",
    volume = "67",
    number = "1",
    year = "2021",
    publisher = "Wiley",
    url = "https://aclanthology.org/G21-50001",
    doi = "10.1002/lno.11982",
    pages = "147--158",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

gha_language: Python


text:
DESCRIPTION = "A Python library for generating news feeds in RSS and Atom formats"
HOMEPAGE = "http://code.google.com/p/feedformatter/"
SECTION = "devel/python"
LICENSE = "BSD-3-Clause"
LIC_FILES_CHKSUM = "file://COPYING;md5=258e3f39e2383fbd011035d04311008d"

SRC_URI = "git://github.com/marianoguerra/feedformatter.git;branch=master;protocol=https"
SRCREV = "7391193c83e10420b5a2d8ef846d23fc368c6d85"

S = "${WORKDIR}/git"

inherit setuptools3

RDEPENDS_${PN} += "\
    ${PYTHON_PN}-datetime \
    ${PYTHON_PN}-io \
    ${PYTHON_PN}-xml \
    "

repository: ni/meta-openembedded

repo_name: ni/meta-openembedded

branch_name: refs/heads/nilrt/master/hardknott

gha_language: BitBake


text:
SECTION = "devel/chicken"
DESCRIPTION = "Shift/Reset Control Operators."
LICENSE = "BSD"
LIC_FILES_CHKSUM = "file://F-operator.meta;md5=3bcdda9060148e3fe2f36162546b8023"
DEPENDS_append_class-cross = " chicken-egg-setup-helper-cross chicken-egg-miscmacros-cross chicken-egg-datatype-cross chicken-egg-box-cross"
DEPENDS_append_class-crosssdk = " chicken-egg-setup-helper-crosssdk chicken-egg-miscmacros-crosssdk chicken-egg-datatype-crosssdk chicken-egg-box-crosssdk"
DEPENDS_append_class-nativesdk = " nativesdk-chicken-egg-setup-helper nativesdk-chicken-egg-miscmacros nativesdk-chicken-egg-datatype nativesdk-chicken-egg-box chicken-egg-setup-helper-crosssdk chicken-egg-miscmacros-crosssdk chicken-egg-datatype-crosssdk chicken-egg-box-crosssdk"
DEPENDS = " chicken-egg-setup-helper chicken-egg-miscmacros chicken-egg-datatype chicken-egg-box chicken-egg-setup-helper-cross chicken-egg-miscmacros-cross chicken-egg-datatype-cross chicken-egg-box-cross chicken-egg-f-operator-cross"
RDEPENDS_${PN} = " chicken-egg-setup-helper chicken-egg-miscmacros chicken-egg-datatype chicken-egg-box"

SRC_URI = "http://code.call-cc.org/egg-tarballs/4/F-operator/F-operator-${PV}.tar.gz"

SRC_URI[md5sum] = "fe835fa0dde15364d0519a5d12976ffb"
SRC_URI[sha256sum] = "609432d148033198c3ef68c771254441e7f2cb0cf6706d532f660169630e2b30"

S = "${WORKDIR}/F-operator-${PV}"

inherit chicken_install

BBCLASSEXTEND = "cross crosssdk nativesdk"

repository: OSSystems/meta-chicken

repo_name: OSSystems/meta-chicken


text:
DESCRIPTION="header-only library for creating parsers according to Parsing Expression Grammar"
HOMEPAGE="https://github.com/taocpp/PEGTL"
LICENSE="MIT"
LIC_FILES_CHKSUM = "file://LICENSE;md5=6a5195f720a8d436a4148e0cb8660400"

SRCREV = "47e878ad4fd72c91253c9d47b6f17e001ca2dfcf"
SRC_URI = "git://github.com/taocpp/PEGTL.git;protocol=https;branch=2.x \
          "

inherit cmake

S = "${WORKDIR}/git"

CXXFLAGS += " -Wno-error=type-limits"


text:
@incollection{JayLunnMichailidou-2008,
 address = {London},
 author = {Jay, Caroline and Lunn, Darren and Michailidou, Eleni},
 booktitle = {Web Accessibility},
 chapter = {8},
 doi = {http://dx.doi.org/10.1007/978-1-84800-050-6_8},
 edition = {1st},
 editor = {Harper, Simon and Yesilada, Yeliz},
 keywords = {wa-book},
 mendeley-groups = {WWW/Internet,WA Book Chapters,Books},
 month = {sep},
 pages = {107--126},
 publisher = {Springer},
 series = {Human-Computer Interaction Series},
 title = {End User Evaluations},
 url = {http://dx.doi.org/http://dx.doi.org/10.1007/978-1-84800-050-6_8},
 year = {2008}
}

repository: sharpic/academic-kickstart

repo_name: sharpic/academic-kickstart


text:
SUMMARY = "Linux Preempt RT Kernel with ACRN enabled (UOS)"

require recipes-kernel/linux/linux-intel.inc
require linux-intel-acrn.inc

# PREFERRED_PROVIDER for virtual/kernel. This avoids errors when trying
# to build multiple virtual/kernel providers.
python () {
    if d.getVar("KERNEL_PACKAGE_NAME", True) == "kernel" and d.getVar("PREFERRED_PROVIDER_virtual/kernel") != "linux-intel-rt-acrn-uos":
        raise bb.parse.SkipPackage("Set PREFERRED_PROVIDER_virtual/kernel to linux-intel-rt-acrn-uos to enable it")
}

SRC_URI_append = "  file://uos.cfg"

LIC_FILES_CHKSUM = "file://COPYING;md5=bbea815ee2795b2f4230826c0c6b8814"
SRC_URI_append = " file://0001-menuconfig-mconf-cfg-Allow-specification-of-ncurses-.patch"

KBRANCH = "4.19/preempt-rt"
KMETA_BRANCH = "yocto-4.19"

DEPENDS += "elfutils-native openssl-native util-linux-native"

LINUX_VERSION ?= "4.19.59"
SRCREV_machine ?= "d6dc301c71aea6098e5e19ef3f265d0ba9981167"
SRCREV_meta ?= "960be4218436fbbb3500e019f7abf02fa94e6aac"

LINUX_VERSION_EXTENSION = "-linux-intel-preempt-rt-acrn-uos"

repository: BelalElkady/meta-acrn

repo_name: BelalElkady/meta-acrn


text:
inherit kernel
require recipes-kernel/linux/linux-yocto.inc

FILESEXTRAPATHS_prepend := "${THISDIR}/linux-odroid-dev:"

KBRANCH ?= "master"
SRCREV ?= "e49251988b10e8787baa5f3d8ffd154e003f0963"

KBRANCH_odroid-xu3 ?= "master"
SRCREV_machine_odroid-xu3 ?= "e49251988b10e8787baa5f3d8ffd154e003f0963"
KERNEL_DEVICETREE_odroid-xu3 = "exynos5422-odroidxu3.dtb"

SRC_URI = "git://git.kernel.org/pub/scm/linux/kernel/git/torvalds/linux.git;bareclone=1;branch=${KBRANCH}"

SRC_URI += "file://${MACHINE}_defconfig"

SRC_URI += "file://odroid.scc \
        file://odroid.cfg \
        file://odroid-user-config.cfg \
        file://odroid-user-patches.scc \
"

LINUX_VERSION = "4.2.0"
PV = "${LINUX_VERSION}+git${SRCPV}"

do_configure_prepend () {
    cp ${WORKDIR}/${MACHINE}_defconfig ${B}/.config
}

COMPATIBLE_MACHINE = "odroid-xu3"

repository: wzab/meta-odroid

repo_name: wzab/meta-odroid


text:
SUMMARY = "OpenBMC checkstop monitor."
DESCRIPTION = "The checkstop monitor watches a GPIO for a checkstop signal \
and reboots a server."
PR = "r1"

inherit skeleton-gdbus

SKELETON_DIR = "hostcheckstop"

repository: tpilukechen/openbmc

repo_name: tpilukechen/openbmc


text:
SECTION = "devel"
require binutils_${PV}.bb
inherit canadian-sdk

DEPENDS="\
	virtual/${HOST_PREFIX}binutils \
	virtual/${HOST_PREFIX}gcc \
	flex-native bison-native \
"

FILESDIR = "${@os.path.dirname(bb.data.getVar('FILE',d,1))}/binutils-${PV}"
# On MinGW hosts we want to prepend a drive letter, in ${SDK_REALPATH_MINGW}
# to the sysroot path.
SYSROOT = "${@['${SDK_REALPATH}/${TARGET_SYS}', '${SDK_REALPATH_MINGW}${SDK_REALPATH}/${TARGET_SYS}'][bb.data.getVar('SDK_OS', d, 1) in ['mingw32', 'mingw64']]}"
EXTRA_OECONF = "--with-sysroot=${SYSROOT} \
		--program-prefix=${TARGET_PREFIX}"
PR = "r4"

FILES_${PN}-dbg += "${prefix}/${TARGET_SYS}/bin/.debug"

do_install () {
        autotools_do_install

        # Install the libiberty header
        install -d ${D}${includedir}
        install -m 644 ${S}/include/ansidecl.h ${D}${includedir}
        install -m 644 ${S}/include/libiberty.h ${D}${includedir}
}

SRC_URI[md5sum] = "d5bce238060d631be60a3f1f1009a7ba"
SRC_URI[sha256sum] = "6fe3c4b2d45a50582f832bc77deb4e3da74a15ea8e09dbb214b9c44e7c3378fc"


text:
DESCRIPTION="The Asterisk open source software PBX"
HOMEPAGE="http://www.asterisk.org"
SECTION = "voip"
LICENSE="GPL"
#DEPENDS="asterisk"
PR = "r1"

SRC_URI="http://downloads.asterisk.org/pub/telephony/sounds/releases/asterisk-core-sounds-en-g729-${PV}.tar.gz"

do_install() {
	install -d ${D}${localstatedir}/lib/asterisk/sounds
	#install -m 644 ${WORKDIR}/*.g729 ${D}${localstatedir}/lib/asterisk/sounds/
	#install -m 644 ${WORKDIR}/CREDITS* ${D}${localstatedir}/lib/asterisk/sounds/
	#install -m 644 ${WORKDIR}/core-sounds-en.txt ${D}${localstatedir}/lib/asterisk/sounds/
	mv ${WORKDIR}/*.g729 ${D}${localstatedir}/lib/asterisk/sounds/

	#install -d ${D}${localstatedir}/lib/asterisk/sounds/dictate
	#install -m 644 ${WORKDIR}/dictate/* ${D}${localstatedir}/lib/asterisk/sounds/dictate/
	mv ${WORKDIR}/dictate ${D}${localstatedir}/lib/asterisk/sounds/

	#install -d ${D}${localstatedir}/lib/asterisk/sounds/digits
	#install -m 644 ${WORKDIR}/digits/* ${D}${localstatedir}/lib/asterisk/sounds/digits/
	mv ${WORKDIR}/digits ${D}${localstatedir}/lib/asterisk/sounds/

	#install -d ${D}${localstatedir}/lib/asterisk/sounds/followme
	#install -m 644 ${WORKDIR}/followme/* ${D}${localstatedir}/lib/asterisk/sounds/followme/
	mv ${WORKDIR}/followme ${D}${localstatedir}/lib/asterisk/sounds/

	#install -d ${D}${localstatedir}/lib/asterisk/sounds/letters
	#install -m 644 ${WORKDIR}/letters/* ${D}${localstatedir}/lib/asterisk/sounds/letters/
	mv ${WORKDIR}/letters ${D}${localstatedir}/lib/asterisk/sounds/

	#install -d ${D}${localstatedir}/lib/asterisk/sounds/phonetic
	#install -m 644 ${WORKDIR}/phonetic/* ${D}${localstatedir}/lib/asterisk/sounds/phonetic/
	mv ${WORKDIR}/phonetic ${D}${localstatedir}/lib/asterisk/sounds/

	#install -d ${D}${localstatedir}/lib/asterisk/sounds/silence
	#install -m 644 ${WORKDIR}/silence/* ${D}${localstatedir}/lib/asterisk/sounds/silence/
	mv ${WORKDIR}/silence ${D}${localstatedir}/lib/asterisk/sounds/
}

pkg_postinst_prepend() {
	chown -R asterisk:asterisk ${localstatedir}/lib/asterisk/sounds/
}

SRC_URI[md5sum] = "febffdf865db7a773ce687b295cb19e9"
SRC_URI[sha256sum] = "6829f56eaf0221125e83f5547c773895d00ddc725a0b3a7015d22bbcaf6675ed"


text:
FILE(REMOVE_RECURSE
  "CMakeFiles/shapedpoints.dir/src/shapedpoints/shapedpoints.cpp.o"
  "bin/shapedpoints.pdb"
  "bin/shapedpoints"
)

# Per-language clean rules from dependency scanning.
FOREACH(lang CXX)
  INCLUDE(CMakeFiles/shapedpoints.dir/cmake_clean_${lang}.cmake OPTIONAL)
ENDFOREACH(lang)


text:
DESCRIPTION = "OpenCuberevo: Base Task for the OpenCuberevo Distribution"
SECTION = "opencuberevo/base"
LICENSE = "MIT"
PR = "r5"

inherit task

#
# task-opencuberevo-base
#
DESCRIPTION_${PN} = "OpenCuberevo: Basesystem utilities"

OPENCUBEREVO_BASE_ESSENTIAL = "\
  autofs \
  base-files-doc \
  cuberevo-bootlogo \
  cuberevo-compat \
  cuberevo-feed-configs \
  cuberevo-keymaps \
  e2fsprogs-e2fsck \
  e2fsprogs-mke2fs \
  fakelocale \
  netkit-base \
  opkg-nogpg \
  timezones-alternative \
  tuxbox-common \
  util-linux-sfdisk \
  vsftpd \
  hdparm \
"

OPENCUBEREVO_BASE_RECOMMENDS = "\
  dropbear \
  sambaserver \
  zeroconf \
"

OPENCUBEREVO_BASE_OPTIONAL_RECOMMENDS = "\
  gdbserver \
  hddtemp \
  joe \
  mc \
  ncdu \
  ppp \
  smartmontools \
  avahi-daemon \
"

RDEPENDS_${PN} = "\
	${OPENCUBEREVO_BASE_ESSENTIAL} \
"

RRECOMMENDS_${PN} = "\
	${OPENCUBEREVO_BASE_RECOMMENDS} \
	${OPENCUBEREVO_BASE_OPTIONAL_RECOMMENDS} \
"

repository: popazerty/openembedded-cuberevo

repo_name: popazerty/openembedded-cuberevo


text:
package structtag

import (
	"errors"
	"reflect"
	"strconv"
)

var notFound = errors.New(`specified tag not found`)

// BoolValue looks up tag `n`, and returns its value after
// parsing it as boolean using strconv.ParseBool.
func BoolValue(t reflect.StructTag, n string) (bool, error) {
	s, ok := Lookup(t, n)
	if !ok {
		return false, notFound
	}

	return strconv.ParseBool(s)
}

repository: lestrrat/go-config

repo_name: lestrrat/go-config

extension: go


text:
/**
 * Extract attribute fields from the profile data returned by Keycloak
 * @param attributeFields - Object which contains all the attributes of a user
 */
function extractAttributeFields(attributeFields) {
  var attributes = {};
  if (attributeFields) {
    for (var field in attributeFields) {
      if (attributeFields[field].length > 0) {
        attributes[field] = attributeFields[field][0];
      }
    }
  }
  return attributes;
}

/**
 * Formats profile data as expected by the application
 * @param profileData - Object which contains the profile data of a user
 */
function formatProfileData(profileData) {
  var profile;
  if (profileData) {
    profile = extractAttributeFields(profileData.attributes);
    profile.username = profileData.username;
    profile.email = profileData.email;
  }
  return profile;
}

module.exports = formatProfileData;

gha_language: HTML

extension: js


text:
LICENSE = "GPL"
inherit gpe update-rc.d

DESCRIPTION = "GPE Desktop Manager"
SECTION = "gpe"
PRIORITY = "optional"
MAINTAINER = "Phil Blundell <pb@handhelds.org>"
DEPENDS = "glib-2.0 xserver-common"
RDEPENDS_${PN} += "xserver-common"
PR = "r6"

INITSCRIPT_NAME = "gpe-dm"
INITSCRIPT_PARAMS = "start 99 5 2 . stop 20 0 1 6 ."

SRC_URI += "file://remove-X-scripts.patch;patch=1"

repository: Terentyev/familiar-linux

repo_name: Terentyev/familiar-linux