text:
@article{hamady2009,
  title={Microbial community profiling for human microbiome projects: Tools, techniques, and challenges},
  author={Hamday, Micah and Knight, Rob},
  journal={Genome Research},
  year={2009},
  volume={19},
  pages={1141--1152},
  doi={10.1101/gr.085464.108}
}

@article{hamady2008,
  title={Error-correcting barcoded primers allow hundreds of samples to be pyrosequenced in multiplex},
  author={Hamday, Micah and Walker J., Jeffrey and Harris, J. Kirk and Gold J., Nicholas and Knight, Rob},
  journal={Nature Methods},
  year={2008},
  volume={5},
  issue={3},
  pages={235–-237},
  doi={10.1038/nmeth.1184}
}

branch_name: refs/heads/dev

gha_language: Python


text:
@inproceedings{03Zhang21,
author = {Larry Yueli Zhang and Andrew K. Petersen and Michael Liut and Bogdan Simion and Furkan Alaca},
title = {A Multi-Course Report on the Experience of Unplanned Online Exams},
year = {2021},
isbn = {9781450380621},
publisher = {Association for Computing Machinery},
address = {New York, NY, USA},
url = {https://doi.org/10.1145/3408877.3432515},
doi = {10.1145/3408877.3432515},
abstract = {We report our experience of preparing and conducting unplanned online exams in the unique half-physical, half-virtual semester of Winter 2020. The report covers four courses in a large university's computer science program, ranging from first-year to third-year. With the data generated by students taking both in-person and online exams in multiple courses, we perform analyses to evaluate the validity of the online exams (especially the unproctored ones) as an assessment of student understanding. With the fine-grained student activity data provided by the online exam platform, we are also able to investigate the patterns in student exam-taking behaviours and their correlations with student performance on the exam. In addition, we share, in detail, the tips and lessons that were learned throughout the process of designing, implementing, and hosting the online exams.},
booktitle = {Proceedings of the 52nd ACM Technical Symposium on Computer Science Education},
pages = {17–23},
numpages = {7},
keywords = {student behaviour, online exams, assessment},
location = {Virtual Event, USA},
series = {SIGCSE '21}
}

@inproceedings{05Gholami18,
 author    = {Arash Gholami and Larry Yueli Zhang},
 title = {Student Behaviour in Unsupervised Online Quizzes: A Closer Look},
 booktitle = {Proceedings of the 23rd Western Canadian Conference on Computing Education},
 series = {WCCCE '18},
 year = {2018},
 isbn = {978-1-4503-5805-7},
 location = {Victoria, BC, Canada},
 pages = {8:1--8:6},
 articleno = {8},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/3209635.3209650},
 doi = {10.1145/3209635.3209650},
 acmid = {3209650},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {student assessment, student behaviour, unsupervised online quiz},
}

@inproceedings{02Zehra:2018,
 author = {Shamama Zehra and Aishwarya Ramanathan and Larry Yueli Zhang and Daniel Zingaro},
 title = {Student Misconceptions of Dynamic Programming},
 booktitle = {Proceedings of the 49th ACM Technical Symposium on Computer Science Education},
 series = {SIGCSE '18},
 year = {2018},
 isbn = {978-1-4503-5103-4},
 location = {Baltimore, Maryland, USA},
 pages = {556--561},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/3159450.3159528},
 doi = {10.1145/3159450.3159528},
 acmid = {3159528},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {algorithms, dynamic programming, misconceptions},
}

@inproceedings{02Esteero:2018,
 author = {Ramy Esteero and Mohammed Khan and Mohamed Mohamed and Larry Yueli Zhang and Daniel Zingaro},
 title = {Recursion or Iteration: Does It Matter What Students Choose?},
 booktitle = {Proceedings of the 49th ACM Technical Symposium on Computer Science Education},
 series = {SIGCSE '18},
 year = {2018},
 isbn = {978-1-4503-5103-4},
 location = {Baltimore, Maryland, USA},
 pages = {1011--1016},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/3159450.3159455},
 doi = {10.1145/3159450.3159455},
 acmid = {3159455},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {cs2, iteration, novice programming, recursion},
}

inproceedings{07Rosenbloom17-2,
 author = {Arnold Rosenbloom and Larry Yueli Zhang},
 title = {A 12 Week Full Stack Web Course in 2017},
 booktitle = {Proceedings of the 2017 {ACM} Conference on Innovation and Technology in Computer Science Education},
 series = {ITICSE '17},
 year = {2017},
 location = {Bologna, Italy},
 numpages = {2},
 pages = {86--87},
 publisher = {ACM},
 address = {New York, NY, USA},
}

license: MIT

license_type: permissive

branch_name: refs/heads/master

gha_license_id: NOASSERTION

gha_language: TeX

extension: bib


text:
BASEPV = "4.9"
PV = "linaro-${BASEPV}"
require recipes-devtools/gcc/gcc-cross-initial_${BASEPV}.bb

repository: linaro-mmwg/meta-linaro

repo_name: linaro-mmwg/meta-linaro

extension: bb


text:
@Manual{ref:R,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Development Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2009},
note = {{ISBN} 3-900051-07-0},
url = {http://www.R-project.org},
}

@article{Gentleman:2004p2013,
author = {Robert C Gentleman and others},
journal = {Genome Biology},
title = {Bioconductor: open software development for computational biology and bioinformatics},
number = {10},
pages = {R80},
volume = {5},
year = {2004},
}

@article{Robinson:2014p6362,
author = {Nicolas Delhomme and Kathryn Robinson and Niklas M{\"a}hler and Bastian Schiffthaler and Jenny {\"O}nskog and Benedicte Albrectsen and P{\"a}r Ingvarsson and Torgeir Hvidsten and Stefan Jansson and Nathaniel Street},
journal = {BMC Plant Biology},
title = {Populus tremula (European aspen) shows no evidence of sexual dimorphism},
number = {1},
pages = {276--276},
volume = {14},
year = {2014},
doi = {10.1186/s12870-014-0276-5},
}

@article{Anders:2014p6365,
author = {Simon Anders and Paul Pyl and Wolfgang Huber},
journal = "Bioinformatics",
title = {HTSeq--A Python framework to work with high-throughput sequencing data},
year = {2014}
}

@article{Love:2014p6358,
author = {Michael Love and Wolfgang Huber and Simon Anders},
journal = "Genome Biology",
title = {Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2},
year = {2014}
}

@article{Pakull,
author={B. Pakull, B. Kersten, J. Lüneburg and M. Fladung},
journal = "Plant Biology",
title = {A simple PCR-based marker to determine sex in aspen)},
year = {2014}
}

@article{Anders:2010p1659,
author = {Simon Anders and Wolfgang Huber},
journal = {Genome Biology},
title = {Differential expression analysis for sequence count data},
number = {10},
pages = {R106},
volume = {11},
year = {2010},
}

@article{Robinson:2010p775,
author = {Mark D Robinson and others},
journal = {Bioinformatics},
title = {edgeR: a Bioconductor package for differential expression analysis of digital gene expression data},
number = {1},
pages = {139--40},
volume = {26},
year = {2010},
}

@article{Soneson:2013p5778,
author = {Charlotte Soneson and Mauro Delorenzi},
journal = {BMC Bioinformatics},
title = {A comparison of methods for differential expression analysis of RNA-seq data},
pages = {91},
volume = {14},
year = {2013},
doi = {10.1186/1471-2105-14-91},
}

repository: UPSCb/UPSCb

repo_name: UPSCb/UPSCb


text:
Automatically generated by Mendeley Desktop 1.19.4
Any changes to this file will be lost if it is regenerated by Mendeley.

BibTeX export options can be customized via Preferences -> BibTeX in Mendeley Desktop

@phdthesis{Sonmez2012,
author = {Sonmez, Orhan},
file = {:Users/sepmein/Qsync/Papers/Sonmez{\_}2012{\_}Monte Carlo Methods for Reinforcement Learning.pdf:pdf},
pages = {58},
school = {Bogazici University},
title = {{Monte Carlo Methods for Reinforcement Learning}},
type = {Doctor of Philosophy},
year = {2012}
}

license: Unlicense

repository: sepmein/references

repo_name: sepmein/references


text:
option(BUILD_TESTING off)

include(CMakeParseArguments)
enable_testing()

if(NOT TARGET check)
    add_custom_target(check COMMAND ${CMAKE_CTEST_COMMAND} --output-on-failure -C ${CMAKE_CFG_INTDIR} WORKING_DIRECTORY ${CMAKE_BINARY_DIR})
endif()

if(NOT TARGET tests)
    add_custom_target(tests COMMENT "Build all tests.")
    add_dependencies(check tests)
endif()

if(NOT TARGET check-${PROJECT_NAME})
    add_custom_target(check-${PROJECT_NAME} COMMAND ${CMAKE_CTEST_COMMAND} -L ${PROJECT_NAME} --output-on-failure -C ${CMAKE_CFG_INTDIR} WORKING_DIRECTORY ${CMAKE_BINARY_DIR})
endif()

if(NOT TARGET tests-${PROJECT_NAME})
    add_custom_target(tests-${PROJECT_NAME} COMMENT "Build all tests for ${PROJECT_NAME}.")
    add_dependencies(check-${PROJECT_NAME} tests-${PROJECT_NAME})
endif()

function(bcm_mark_as_test)
    foreach(TEST_TARGET ${ARGN})
        if (NOT BUILD_TESTING)
            get_target_property(TEST_TARGET_TYPE ${TEST_TARGET} TYPE)
            # We can onle use EXCLUDE_FROM_ALL on build targets
            if(NOT "${TEST_TARGET_TYPE}" STREQUAL "INTERFACE_LIBRARY")
                set_target_properties(${TEST_TARGET}
                    PROPERTIES EXCLUDE_FROM_ALL TRUE
                )
            endif()
        endif()
        add_dependencies(tests ${TEST_TARGET})
        add_dependencies(tests-${PROJECT_NAME} ${TEST_TARGET})
    endforeach()
endfunction(bcm_mark_as_test)

if(NOT TARGET _bcm_internal_tests-${PROJECT_NAME})
    file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/_bcm_internal_tests-${PROJECT_NAME}.cpp "")
    add_library(_bcm_internal_tests-${PROJECT_NAME} STATIC ${CMAKE_CURRENT_BINARY_DIR}/_bcm_internal_tests-${PROJECT_NAME}.cpp)
    bcm_mark_as_test(_bcm_internal_tests-${PROJECT_NAME})
endif()

foreach(scope DIRECTORY TARGET)
    define_property(${scope} PROPERTY "BCM_TEST_DEPENDENCIES" INHERITED
        BRIEF_DOCS "Default test dependencies"
        FULL_DOCS "Default test dependencies"
    )
endforeach()

function(bcm_test_link_libraries)
    if(BUILD_TESTING)
        set_property(DIRECTORY APPEND PROPERTY BCM_TEST_DEPENDENCIES ${ARGN})
        target_link_libraries(_bcm_internal_tests-${PROJECT_NAME} ${ARGN})
    else()
        foreach(TARGET ${ARGN})
            if(TARGET ${TARGET})
                set_property(DIRECTORY APPEND PROPERTY BCM_TEST_DEPENDENCIES ${TARGET})
                target_link_libraries(_bcm_internal_tests-${PROJECT_NAME} ${TARGET})
            elseif(${TARGET} MATCHES "::")
                bcm_shadow_exists(HAS_TARGET ${TARGET})
                set_property(DIRECTORY APPEND PROPERTY BCM_TEST_DEPENDENCIES $<${HAS_TARGET}:${TARGET}>)
                target_link_libraries(_bcm_internal_tests-${PROJECT_NAME} $<${HAS_TARGET}:${TARGET}>)
            else()
                set_property(DIRECTORY APPEND PROPERTY BCM_TEST_DEPENDENCIES ${TARGET})
                target_link_libraries(_bcm_internal_tests-${PROJECT_NAME} ${TARGET})
            endif()
        endforeach()
    endif()
endfunction()

function(bcm_target_link_test_libs TARGET)
    # target_link_libraries(${TARGET}
    #     $<TARGET_PROPERTY:BCM_TEST_DEPENDENCIES>
    # )
    get_property(DEPS DIRECTORY PROPERTY BCM_TEST_DEPENDENCIES)
    target_link_libraries(${TARGET} ${DEPS})
endfunction()

function(bcm_test)
    set(options COMPILE_ONLY WILL_FAIL NO_TEST_LIBS)
    set(oneValueArgs NAME)
    set(multiValueArgs SOURCES CONTENT ARGS)

    cmake_parse_arguments(PARSE "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})

    if(PARSE_UNPARSED_ARGUMENTS)
        message(FATAL_ERROR "Unknown keywords given to bcm_test(): \"${PARSE_UNPARSED_ARGUMENTS}\"")
    endif()

    # TODO: Check if name exists

    set(SOURCES ${PARSE_SOURCES})
    if(PARSE_CONTENT)
        file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/generated-${PARSE_NAME}.cpp "${PARSE_CONTENT}")
        set(SOURCES ${CMAKE_CURRENT_BINARY_DIR}/generated-${PARSE_NAME}.cpp)
    endif()

    if(PARSE_COMPILE_ONLY)
        add_library(${PARSE_NAME} STATIC EXCLUDE_FROM_ALL ${SOURCES})
        add_test(NAME ${PARSE_NAME}
            COMMAND ${CMAKE_COMMAND} --build . --target ${PARSE_NAME} --config $<CONFIGURATION>
            WORKING_DIRECTORY ${CMAKE_BINARY_DIR})

        # set_tests_properties(${PARSE_NAME} PROPERTIES RESOURCE_LOCK bcm_test_compile_only)
    else()
        add_executable(${PARSE_NAME} ${SOURCES})
        bcm_mark_as_test(${PARSE_NAME})
        if(WIN32)

            # TODO: Don't use LIBRARY_OUTPUT_PATH as cwd, instead add
            #       LIBRARY_OUTPUT_PATH to library path
            add_test(NAME ${PARSE_NAME} WORKING_DIRECTORY ${LIBRARY_OUTPUT_PATH} COMMAND ${PARSE_NAME}${CMAKE_EXECUTABLE_SUFFIX} ${PARSE_ARGS})
        else()
            add_test(NAME ${PARSE_NAME} COMMAND ${PARSE_NAME} ${PARSE_ARGS} WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
        endif()
    endif()
    if(PARSE_WILL_FAIL)
        set_tests_properties(${PARSE_NAME} PROPERTIES WILL_FAIL TRUE)
    endif()
    set_tests_properties(${PARSE_NAME} PROPERTIES LABELS ${PROJECT_NAME})
    if(NOT PARSE_NO_TEST_LIBS)
        bcm_target_link_test_libs(${PARSE_NAME})
    endif()
endfunction(bcm_test)

function(bcm_test_header)
    set(options STATIC NO_TEST_LIBS)
    set(oneValueArgs NAME HEADER)
    set(multiValueArgs)

    cmake_parse_arguments(PARSE "${options}" "${oneValueArgs}" "${multiValueArgs}" ${ARGN})

    if(PARSE_STATIC)
        file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/header-main-include-${PARSE_NAME}.cpp
            "#include <${PARSE_HEADER}>\nint main() {}\n"
        )
        file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/header-static-include-${PARSE_NAME}.cpp
            "#include <${PARSE_HEADER}>\n"
        )
        bcm_test(NAME ${PARSE_NAME} SOURCES
            ${CMAKE_CURRENT_BINARY_DIR}/header-main-include-${PARSE_NAME}.cpp
            ${CMAKE_CURRENT_BINARY_DIR}/header-static-include-${PARSE_NAME}.cpp
        )
    else()
        bcm_test(NAME ${PARSE_NAME} CONTENT
            "#include <${PARSE_HEADER}>\nint main() {}\n"
        )
    endif()
    set_tests_properties(${PARSE_NAME} PROPERTIES LABELS ${PROJECT_NAME})
    if(NOT PARSE_NO_TEST_LIBS)
        bcm_target_link_test_libs(${PARSE_NAME})
    endif()
endfunction(bcm_test_header)

repository: jjhegedus/boost

repo_name: jjhegedus/boost

extension: cmake


text:
@inproceedings{actrec,
  title={3D-Reconstruction of Indoor Environments from Human Activity},
  author={B. Frank, M. Ruhnke, Maxim Tatarchenko and W. Burgard},
  booktitle={ICRA},
  year={2015}
}

repository: tatarchm/academic

repo_name: tatarchm/academic

gha_license_id: MIT

gha_language: Shell


text:
@article{Alexander2015,
 author = {Alexander, Harriet and Jenkins, Bethany D. and Rynearson, Tatiana A. and Dyhrman, Sonya T.},
 doi = {10.1073/pnas.1421993112},
 journal = {Proceedings of the National Academy of Sciences},
 month = {apr},
 number = {17},
 pages = {E2182--E2190},
 title = {Metatranscriptome analyses indicate resource partitioning between diatoms in the field},
 volume = {112},
 url = {http://www.pnas.org/content/112/17/E2182},
 year = {2015}
}

repository: AlexanderLabWHOI/academic-kickstart

repo_name: AlexanderLabWHOI/academic-kickstart


text:
@import  url('https://fonts.googleapis.com/css?family=Source+Code+Pro');

body{
  padding: 40px;
  background-color: pink;
}

p {
  border-right:  .15em solid orange;
  white-space: nowrap;
  overflow: hidden;
  font-family: 'Source Code Pro', monospace;
  font-size: 28px;
  color: black;
  text-align: center;
  margin-down:50px;
  box-shadow: -20px 20px  10px rgba(0,0,0,0.5);
  transform:translate(20%,-50%);

}

p {
  animation: animated-text 4s steps(40) 1s 1 normal both,
             animated-cursor 600ms steps(40) infinite;
}
.p1 {
border-right:  .15em solid orange;
white-space: nowrap;
overflow: hidden;
font-family: 'Source Code Pro', monospace;
font-size: 28px;
color: black;
text-align: center;
margin-top:200px;
margin-left: 650px;
box-shadow: -20px 20px  10px rgba(0,0,0,0.5);
transform: rotate(-10deg) skewX(10deg) translate(0,0);
}

.p1 {
  animation: animated-text 4s steps(38) 1s 1 normal both,
             animated-cursor 600ms steps(38) infinite;
}

@keyframes animated-text{
  from{width: 0;}
  to{width: 520px;}
}

@keyframes animated-cursor{
  from{border-right-color: orange;}
  to{border-right-color: transparent;}
}

repository: pooja-gera/TheWireUsChallenge

path: /CSS Tricks/CSST_Day_17/styles.css

repo_name: pooja-gera/TheWireUsChallenge

extension: css


text:
@inproceedings{DBLP:conf/sac/BaduelOB20,
 author = {Ronan Baduel and
Iulian Ober and
Jean-Michel Bruel},
 bibsource = {dblp computer science bibliography, https://dblp.org},
 biburl = {https://dblp.org/rec/conf/sac/BaduelOB20.bib},
 booktitle = {SAC '20: The 35th ACM/SIGAPP Symposium on Applied Computing, online
event, [Brno, Czech Republic], March 30 - April 3, 2020},
 doi = {10.1145/3341105.3373944},
 editor = {Chih-Cheng Hung and
Tomás Cerný and
Dongwan Shin and
Alessio Bechini},
 pages = {1798--1805},
 publisher = {ACM},
 timestamp = {Thu, 02 Apr 2020 17:08:04 +0200},
 title = {Modeling and verification method for an early evaluation of systems
of systems interactions},
 url = {https://doi.org/10.1145/3341105.3373944},
 year = {2020}
}


text:
@article{hardman-mountford_ocean_2003,
 author = {Hardman-Mountford, N.J. and Richardson, A.J. and Agenbag, J.J. and Hagen, E. and Nykjaer, L. and Shillington, F.A. and Villacastin, C.},
 doi = {10.1016/j.pocean.2003.10.001},
 file = {Hardman-Mountford et al. - 2003 - Ocean climate of the South East Atlantic observed .pdf:/Users/ric325/Zotero/storage/JCYYDZ5B/Hardman-Mountford et al. - 2003 - Ocean climate of the South East Atlantic observed .pdf:application/pdf},
 issn = {00796611},
 journal = {Progress in Oceanography},
 language = {en},
 month = {October},
 number = {2-3},
 pages = {181--221},
 title = {Ocean climate of the South East Atlantic observed from satellite data and wind models},
 url = {https://linkinghub.elsevier.com/retrieve/pii/S007966110300168X},
 urldate = {2019-10-24},
 volume = {59},
 year = {2003}
}


text:
@INPROCEEDINGS{puschmann:COGART:2011,
  author = {Puschmann, Andre and Kalil, Mohamed A. and Mitschele-Thiel, Andreas},
  title = {{Implementation and Evaluation of a Practical SDR Testbed}},
  booktitle = {4th International Conference on Cognitive Radio and Advanced Spectrum
	Management (COGART)},
  year = {2011},
  address = {Barcelona, Spain},
  month = {October}
}

repository: andrepuschmann/academic-kickstart

repo_name: andrepuschmann/academic-kickstart


text:
@article{beyer2020imagenet,
  title={Are we done with ImageNet?},
  author={Lucas Beyer and Olivier J. Henaff and Alexander Kolesnikov and Xiaohua Zhai and Aaron van den Oord},
  journal={arXiv preprint arXiv:2002.05709},
  year={2020}
}
@article{ILSVRC15,
  Author={Olga Russakovsky and Jia Deng and Hao Su and Jonathan Krause and Sanjeev Satheesh and Sean Ma and Zhiheng Huang and Andrej Karpathy and Aditya Khosla and Michael Bernstein and Alexander C. Berg and Li Fei-Fei},
  Title={{ImageNet Large Scale Visual Recognition Challenge}},
  Year={2015},
  journal={International Journal of Computer Vision (IJCV)},
  doi={10.1007/s11263-015-0816-y},
  volume={115},
  number={3},
  pages={211-252}
}

repository: tensorflow/datasets

repo_name: tensorflow/datasets


text:
@article{Abbott:BBHO12016,
 author = {Abbott, B. P. et al.},
 collaboration = {LIGO Scientific Collaboration and Virgo Collaboration},
 doi = {10.1103/PhysRevX.6.041015},
 issue = {4},
 journal = {Phys. Rev. X},
 month = {Oct},
 numpages = {36},
 pages = {041015},
 publisher = {American Physical Society},
 title = {Binary Black Hole Mergers in the First Advanced LIGO Observing Run},
 url = {http://link.aps.org/doi/10.1103/PhysRevX.6.041015},
 volume = {6},
 year = {2016}
}

repository: mcoughlin/personal-website

repo_name: mcoughlin/personal-website


text:
.table-data {
    font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
    font-size: 14px;
    line-height: 1.42857143;
    color: #333;
}

.container {
    width: 1600px;
}

th {
    text-align: left !important;
}

.clickable-ellipsis:hover {
    border-bottom: solid 1px #ddd;
    cursor: pointer;
}

.ellipsis-modal-widow .modal-dialog {
    width: 1024px;
    height: 675px;
}

.ellipsis-modal-widow .ellipsis-value-container {
    height: 300px;
}

.ellipsis-modal-widow .ellipsis-value {
    display: block;
    overflow-y: auto;
    overflow-x: auto;
    height: 100%
}

.ellipsis-modal-widow .ellipsis-anonymous pre {
    outline: 1px solid #ccc;
    padding-top: 20px;
    padding-bottom: 20px;
}

.ellipsis-modal-widow .ellipsis-json pre {
    outline: 1px solid #ccc;
    padding: 5px;
    margin: 5px;
}

.ellipsis-modal-widow .ellipsis-json .string {
    color: green;
}

.ellipsis-modal-widow .ellipsis-json .number {
    color: darkorange;
}

.ellipsis-modal-widow .ellipsis-json .boolean {
    color: blue;
}

.ellipsis-modal-widow .ellipsis-json .null {
    color: magenta;
}

.ellipsis-modal-widow .ellipsis-json .key {
    color: red;
}

.select-filter{
    width: 100%;
}

.select-filter-input {
    width: 100%;
}

.select-filter-input.magnifier {
    padding-left: 30px;
    background: url(../../images/icon-search.png) no-repeat 5px center;
    background-size: 20px 20px;
}

.select-filter-clearer {
    background: url(../../images/clearX.gif) no-repeat center center;
    background-size: 8px 8px;
    cursor: pointer;
    padding: 10px;
    border-left: none;
    width: 20px;
    margin-left: -25px;
}

.select-filter-loading {
    background: white url(../../images/spinner64x64.gif) no-repeat center center;
    background-size: 16px 16px;
    padding: 7px 10px;
    border-left: none;
    width: 20px;
    margin-left: -25px;
}

[memberType="CORPORATE"].display-member-type-icon {
    background: url(../../images/icon-corporate.png) no-repeat 5px center;
    background-size: 16px 16px;
    padding-left: 30px;
}

[memberType="INDIVIDUAL"].display-member-type-icon {
    background: url(../../images/icon-individual.png) no-repeat 5px center;
    background-size: 16px 16px;
    padding-left: 30px;
}

[memberType="PROSPECT"].display-member-type-icon {
    background: url(../../images/icon-prospect.png) no-repeat 5px center;
    background-size: 16px 16px;
    padding-left: 30px;
}

[memberType="TIER2"].display-member-type-icon {
    background: url(../../images/icon-prospect.png) no-repeat 5px center;
    background-size: 16px 16px;
    padding-left: 30px;
}

[memberType="PARTNER"].display-member-type-icon {
    background: url(../../images/icon-partner.png) no-repeat 5px center;
    background-size: 16px 16px;
    padding-left: 30px;
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text:
DESCRIPTION = "Open Data Plane"
HOMEPAGE = "http://www.opendataplane.org"
SECTION = "Networking"
LICENSE = "BSD-3-Clause"
LIC_FILES_CHKSUM = "file://LICENSE;md5=4ccfa994aa96974cfcd39a59faee20a2"

PR = "r2"
SRCREV = "odp-0.2"

# ARM support only for v7
COMPATIBLE_HOST = '(i.86|x86_64|powerpc|powerpc64).*-linux'
COMPATIBLE_HOST_armv7a = 'arm.*-linux'

SRC_URI = " \
    git://git.linaro.org/git/lng/odp.git;protocol=http \
"

S = "${WORKDIR}/git"

do_compile() {
	make all
}

do_install() {
	install -d ${D}${libdir}
	install -d ${D}${includedir}
	install -m 644 build/lib/libodp.a ${D}${libdir}
	cp -R build/include/* ${D}${includedir}
}

# Since we don't create any main package, we need to remove the dependency of the -dev one on the main
RDEPENDS_${PN}-dev = ""

repository: billyjbryant/ops-build

repo_name: billyjbryant/ops-build


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repository: imransannu/profile

repo_name: imransannu/profile


text:
%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/

%% Saved with string encoding Unicode (UTF-8)
@inproceedings{andres2011probabilistic,
	title={Probabilistic image segmentation with closedness constraints},
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	booktitle={Computer Vision (ICCV), 2011 IEEE International Conference on},
	pages={2611--2618},
	year={2011},
	organization={IEEE}
}
% staining techniques
@article{briggman2012volume,
	title={Volume electron microscopy for neuronal circuit reconstruction},
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	journal={Current opinion in neurobiology},
	volume={22},
	number={1},
	pages={154--161},
	year={2012},
	publisher={Elsevier}
}
@inproceedings{ronneberger2015u,
  title={U-net: Convolutional networks for biomedical image segmentation},
  author={Ronneberger, Olaf and Fischer, Philipp and Brox, Thomas},
  booktitle={International Conference on Medical image computing and computer-assisted intervention},
  pages={234--241},
  year={2015},
  organization={Springer}
}

@article{lee2017superhuman,
	title={Superhuman accuracy on the SNEMI3D connectomics challenge},
	author={Lee, Kisuk and Zung, Jonathan and Li, Peter and Jain, Viren and Seung, H Sebastian},
	journal={arXiv preprint arXiv:1706.00120},
	year={2017}
}
@article{funke2017deep,
	title={A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs},
	author={Funke, Jan and Tschopp, Fabian David and Grisaitis, William and Singh, Chandan and Saalfeld, Stephan and Turaga, Srinivas C},
	journal={arXiv preprint arXiv:1709.02974},
	year={2017}
}
@article{beier2017multicut,
	title={Multicut brings automated neurite segmentation closer to human performance},
	author={Beier, Thorsten and Pape, Constantin and Rahaman, Nasim and Prange, Timo and Berg, Stuart and Bock, Davi D and Cardona, Albert and Knott, Graham W and Plaza, Stephen M and Scheffer, Louis K and others},
	journal={Nature methods},
	volume={14},
	number={2},
	pages={101},
	year={2017},
	publisher={Nature Publishing Group}
}
@article{zeng2017deepem3d,
	title={DeepEM3D: approaching human-level performance on 3D anisotropic EM image segmentation},
	author={Zeng, Tao and Wu, Bian and Ji, Shuiwang},
	journal={Bioinformatics},
	volume={33},
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	pages={2555--2562},
	year={2017},
	publisher={Oxford University Press}
}
@inproceedings{cciccek20163d,
	title={3D U-Net: learning dense volumetric segmentation from sparse annotation},
	author={{\c{C}}i{\c{c}}ek, {\"O}zg{\"u}n and Abdulkadir, Ahmed and Lienkamp, Soeren S and Brox, Thomas and Ronneberger, Olaf},
	booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
	pages={424--432},
	year={2016},
	organization={Springer}
}

@article{mojo2,
	Author = {Knowles-Barley, Seymour and Roberts, Mike and Kasthuri, Narayanan and Lee, Dongil and Pfister, Hanspeter and Lichtman, Jeff W},
	Date-Added = {2017-11-15 16:37:37 +0000},
	Date-Modified = {2017-11-15 16:37:37 +0000},
	Doi = {10.3389/conf.fninf.2013.09.00060},
	Issn = {1662-5196},
	Journal = {Frontiers in Neuroinformatics},
	Number = {60},
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	Url = {http://www.frontiersin.org/neuroinformatics/10.3389/conf.fninf.2013.09.00060/abstract},
	Year = {2013},
	Bdsk-Url-1 = {http://www.frontiersin.org/neuroinformatics/10.3389/conf.fninf.2013.09.00060/abstract},
	Bdsk-Url-2 = {http://dx.doi.org/10.3389/conf.fninf.2013.09.00060}}

@misc{raveler,
	Author = {{Janelia Farm}},
	Date-Added = {2017-11-15 16:36:53 +0000},
	Date-Modified = {2017-11-15 16:36:53 +0000},
	Howpublished = {\url{https://openwiki.janelia.org/wiki/display/flyem/Raveler}},
	Note = {Accessed on 11/01/2016},
	Title = {Raveler},
	Year = {2014}}

@incollection{Turaga:2009,
	Author = {Turaga, Srinivas and Briggman, Kevin and Helmstaedter, Moritz and Denk, Winfried and Seung, Sebastian},
	Booktitle = {Advances in Neural Information Processing Systems 22},
	Title = {{Maximin affinity learning of image segmentation}},
	Year = {2009}}

@article{plaza2014annotating,
	Author = {Plaza, Stephen M and Parag, Toufiq and Huang, Gary B and Olbris, Donald J and Saunders, Mathew A and Rivlin, Patricia K},
	Journal = {arXiv preprint arXiv:1409.1801},
	Title = {Annotating synapses in large EM datasets},
	Year = {2014}}

@article{10.1371/journal.pone.0125825,
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	Year = {2015}}

@article{demaine2006correlation,
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	Year = {2006}}

@inproceedings{jain2011learning,
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  booktitle={Advances in Neural Information Processing Systems},
  pages={648--656},
  year={2011}
}
@article{rolnick2017morphological,
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	Journal = {arXiv preprint arXiv:1705.10882},
	Title = {Morphological Error Detection in 3D Segmentations},
	Year = {2017}}

@article{zaitoun2015survey,
	Author = {Zaitoun, Nida M and Aqel, Musbah J},
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	Year = {2015}}
@article{funke2017deep,
	title={A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs},
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	journal={arXiv preprint arXiv:1709.02974},
	year={2017}
}
@inproceedings{glorot2010understanding,
	Author = {Glorot, Xavier and Bengio, Yoshua},
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@article{schlegel2017learning,
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	Year = {2017}}

@article{kasthuri2015saturated,
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@article{kernighan1970efficient,
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@inproceedings{keuper2015efficient,
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@inproceedings{horvnakova2017analysis,
	Author = {Hor{\v{n}}{\'a}kov{\'a}, Andrea and Lange, Jan-Hendrik and Andres, Bjoern},
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@article{haehn2017guided,
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	Year = {2013}}

@article{funahashi1989approximate,
	Author = {Funahashi, Ken-Ichi},
	Journal = {Neural networks},
	Number = {3},
	Pages = {183--192},
	Publisher = {Elsevier},
	Title = {On the approximate realization of continuous mappings by neural networks},
	Volume = {2},
	Year = {1989}}

@inproceedings{nesterov1983method,
	Author = {Nesterov, Yurii},
	Title = {A method of solving a convex programming problem with convergence rate O (1/k2)}}

@inproceedings{sato2000teasar,
	Author = {Sato, Mie and Bitter, Ingmar and Bender, Michael A and Kaufman, Arie E and Nakajima, Masayuki},
	Booktitle = {Computer Graphics and Applications, 2000. Proceedings. The Eighth Pacific Conference on},
	Organization = {IEEE},
	Pages = {281--449},
	Title = {TEASAR: Tree-structure extraction algorithm for accurate and robust skeletons},
	Year = {2000}}

@article{zhao2014automatic,
	Author = {Zhao, Ting and Plaza, Stephen M},
	Journal = {arXiv preprint arXiv:1409.1892},
	Title = {Automatic neuron type identification by neurite localization in the Drosophila medulla},
	Year = {2014}}

@inproceedings{briggman2009maximin,
	Author = {Briggman, Kevin and Denk, Winfried and Seung, Sebastian and Helmstaedter, Moritz N and Turaga, Srinivas C},
	Booktitle = {Advances in Neural Information Processing Systems},
	Pages = {1865--1873},
	Title = {Maximin affinity learning of image segmentation},
	Year = {2009}}

@inproceedings{jain2010boundary,
	Author = {Jain, V. and Bollmann, B. and Richardson, M. and Berger, D.R. and Helmst{\"a}dter, M.N. and Briggman, K.L. and Denk, W. and Bowden, J.B. and Mendenhall, J.M. and Abraham, W.C. and Harris, K.M. and Kasthuri, N. and Hayworth, K.J. and Schalek, R. and Tapia, J.C. and Lichtman, J.W. and Seung, Sebastian},
	Booktitle = {Proc. IEEE CVPR 2010},
	Doi = {10.1109/CVPR.2010.5539950},
	Issn = {1063-6919},
	Keywords = {image resolution;image segmentation;learning (artificial intelligence);object detection;optimisation;BLOTC;Berkeley metrics;Berkeley segmentation dataset;boundary labelings;boundary learning by optimization with topological constraints;cost function;human boundary tracings;learning boundary detection;machine learning;object boundary detection;pixel-level disagreement;supervised learning;Constraint optimization;Cost function;Detectors;Electrons;Humans;Image segmentation;Machine learning;Object detection;Supervised learning;Topology},
	Pages = {2488-2495},
	Title = {Boundary Learning by Optimization with Topological Constraints},
	Year = {2010},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/CVPR.2010.5539950}}

@inproceedings{amelio_segmentation,
	Abstract = {We address the problem of automatic 3D segmentation of a stack of electron microscopy sections of brain tissue. Unlike previous efforts, where the reconstruction is usually done on a section-to-section basis, or by the agglomerative clustering of 2D segments, we leverage information from the entire volume to obtain a globally optimal 3D segmentation. To do this, we formulate the segmentation as the solution to a fusion problem. We first enumerate multiple possible 2D segmentations for each section in the stack, and a set of 3D links that may connect segments across consecutive sections. We then identify the fusion of segments and links that provide the most globally consistent segmentation of the stack. We show that this two-step approach of pre-enumeration and posterior fusion yields significant advantages and provides state-of-the-art reconstruction results. Finally, as part of this method, we also introduce a robust rotationally-invariant set of features that we use to learn and enumerate the above 2D segmentations. Our features outperform previous connectomic-specific descriptors without relying on a large set of heuristics or manually designed filter banks.},
	Author = {V\'azquez-Reina, A. and Gelbart, M. and Huang, D. and Lichtman, J. and Miller, E. and Pfister, H.},
	Booktitle = {Proc. IEEE ICCV},
	Doi = {10.1109/ICCV.2011.6126240},
	Issn = {1550-5499},
	Keywords = {biological tissues;brain;electron microscopy;image fusion;image reconstruction;image segmentation;medical image processing;2D segmentation;3D link;agglomerative clustering;automatic 3D segmentation;brain tissue;connectomic-specific descriptor;electron microscopy stack;robust rotationally-invariant feature set;section-to-section basis;segment fusion;segmentation fusion;state-of-the-art reconstruction;two-step approach;Brain;Educational institutions;Image segmentation;Joining processes;Labeling;Neurons;Three dimensional displays},
	Month = {Nov},
	Pages = {177-184},
	Title = {Segmentation fusion for connectomics},
	Year = {2011},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/ICCV.2011.6126240}}

@misc{rhoananet,
	Author = {Seymour Knowles-Barley and Verena Kaynig and Thouis Ray Jones and Alyssa Wilson and Joshua Morgan and Dongil Lee and Daniel Berger and Narayanan Kasthuri and Jeff W. Lichtman and Hanspeter Pfister},
	Ee = {http://arxiv.org/abs/1611.06973},
	Journal = {CoRR},
	Note = {(available on arXiv:1611.06973 [cs.CV])},
	Title = {RhoanaNet Pipeline: Dense Automatic Neural Annotation},
	Volume = {abs/1611.06973},
	Year = {2016}}

@article{kaynig2015large,
	Author = {Kaynig, Verena and Vazquez-Reina, Amelio and Knowles-Barley, Seymour and Roberts, Mike and Jones, Thouis R and Kasthuri, Narayanan and Miller, Eric and Lichtman, Jeff and Pfister, Hanspeter},
	Journal = {Medical image analysis},
	Number = {1},
	Pages = {77--88},
	Publisher = {Elsevier},
	Title = {Large-scale automatic reconstruction of neuronal processes from electron microscopy images},
	Volume = {22},
	Year = {2015}}


text:
@book{Martin_1983,
	title = {Human Brain Evolution in an Ecological Context},
	publisher = {American Museum of Natural History},
	author = {Martin, Robert D.},
	year = {1983}
},

@article{Rilling_Insel_1999,
	title = {The primate neocortex in comparative perspective using magnetic resonance imaging},
	volume = {37},
	issn = {0047-2484},
	number = {2},
	journal = {Journal of Human Evolution},
	author = {Rilling, James K. and Insel, Thomas R.},
	year = {1999},
	pages = {191--223}
},
@INPROCEEDINGS{Schmidt_Olsson_2006,
	author={Mikkel N. Schmidt and Rasmus K. Olsson},
	title={Single-channel speech separation using sparse non-negative matrix factorization},
	booktitle={INTERSPEECH},
	year={2006},
	pages={2614-2617}
},
@article{Virtanen_2007,
	title={Monaural Sound Source Separation by Nonnegative Matrix Factorization With Temporal Continuity and Sparseness Criteria},
	volume={15},
	issn={1558-7916},
	number={3},
	journal={IEEE Transactions on Audio, Speech, and Language Processing},
	author={Tuomas Virtanen},
	year={2007},
	pages={1066-1074}
},
@incollection{NIPS2012_4824,
title = {ImageNet Classification with Deep Convolutional Neural Networks},
author = {Alex Krizhevsky and Sutskever, Ilya and Hinton, Geoffrey E},
booktitle = {Advances in Neural Information Processing Systems 25},
editor = {F. Pereira and C. J. C. Burges and L. Bottou and K. Q. Weinberger},
pages = {1097--1105},
year = {2012},
publisher = {Curran Associates, Inc.},
url = {http://papers.nips.cc/paper/4824-imagenet-classification-with-deep-convolutional-neural-networks.pdf}
},
@ARTICLE{6296526,
author={G. Hinton and L. Deng and D. Yu and G. E. Dahl and A. r. Mohamed and N. Jaitly and A. Senior and V. Vanhoucke and P. Nguyen and T. N. Sainath and B. Kingsbury},
journal={IEEE Signal Processing Magazine},
title={Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research Groups},
year={2012},
volume={29},
number={6},
pages={82-97},
doi={10.1109/MSP.2012.2205597},
ISSN={1053-5888},
month={Nov}
},
@inproceedings{roweis2001one,
  title={One microphone source separation},
  author={Roweis, Sam T},
  booktitle={Advances in neural information processing systems},
  pages={793--799},
  year={2001}
},
@misc{laslab,
	title={Ikerbasque and University of The Basque Country Language and Speech Lab's 1\textsuperscript{st} Speech Separation challenge},
	howpublished = "\url{http://laslab.org/SpeechSeparationChallenge/}",
	year = {2006}
},

@INPROCEEDINGS{Lee00algorithmsfor,
    author = {Daniel D. Lee and H. Sebastian Seung},
    title = {Algorithms for Non-negative Matrix Factorization},
    booktitle = {In NIPS},
    year = {2000},
    pages = {556--562},
    publisher = {MIT Press}
}

repository: mthreet/thesis

repo_name: mthreet/thesis


text:
@proceedings{ws-2013-2013,
    title = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    editor = "Cohen, Kevin Bretonnel  and
      Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Pestian, John  and
      Tsujii, Jun{'}ichi",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1900",
}
@inproceedings{matykiewicz-etal-2013-earlier,
    title = "Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing",
    author = "Matykiewicz, Pawel  and
      Cohen, Kevin  and
      Holland, Katherine D.  and
      Glauser, Tracy A.  and
      Standridge, Shannon M.  and
      Verspoor, Karin M.  and
      Pestian, John",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1901",
    pages = "1--9",
}
@inproceedings{yetisgen-yildiz-etal-2013-identification,
    title = "Identification of Patients with Acute Lung Injury from Free-Text Chest X-Ray Reports",
    author = "Yetisgen-Yildiz, Meliha  and
      Bejan, Cosmin  and
      Wurfel, Mark",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1902",
    pages = "10--17",
}
@inproceedings{miller-etal-2013-discovering,
    title = "Discovering Temporal Narrative Containers in Clinical Text",
    author = "Miller, Timothy  and
      Bethard, Steven  and
      Dligach, Dmitriy  and
      Pradhan, Sameer  and
      Lin, Chen  and
      Savova, Guergana",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1903",
    pages = "18--26",
}
@inproceedings{bretschneider-etal-2013-identifying,
    title = "Identifying Pathological Findings in {G}erman Radiology Reports Using a Syntacto-semantic Parsing Approach",
    author = "Bretschneider, Claudia  and
      Zillner, Sonja  and
      Hammon, Matthias",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1904",
    pages = "27--35",
}
@inproceedings{henriksson-etal-2013-corpus,
    title = "Corpus-Driven Terminology Development: Populating {S}wedish {SNOMED} {CT} with Synonyms Extracted from Electronic Health Records",
    author = "Henriksson, Aron  and
      Skeppstedt, Maria  and
      Kvist, Maria  and
      Duneld, Martin  and
      Conway, Mike",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1905",
    pages = "36--44",
}
@inproceedings{dellorletta-etal-2013-unsupervised,
    title = "Unsupervised Linguistically-Driven Reliable Dependency Parses Detection and Self-Training for Adaptation to the Biomedical Domain",
    author = "Dell{'}Orletta, Felice  and
      Venturi, Giulia  and
      Montemagni, Simonetta",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1906",
    pages = "45--53",
}
@inproceedings{kilicoglu-etal-2013-interpreting,
    title = "Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis",
    author = "Kilicoglu, Halil  and
      Fiszman, Marcelo  and
      Demner-Fushman, Dina",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1907",
    pages = "54--62",
}
@inproceedings{van-landeghem-etal-2013-evaluating,
    title = "Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures",
    author = "Van Landeghem, Sofie  and
      Kaewphan, Suwisa  and
      Ginter, Filip  and
      Van de Peer, Yves",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1908",
    pages = "63--71",
}
@inproceedings{temnikova-cohen-2013-recognizing,
    title = "Recognizing Sublanguages in Scientific Journal Articles through Closure Properties",
    author = "Temnikova, Irina  and
      Cohen, Kevin",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1909",
    pages = "72--79",
}
@inproceedings{fluck-etal-2013-bel,
    title = "{BEL} Networks Derived from Qualitative Translations of {B}io{NLP} Shared Task Annotations",
    author = "Fluck, Juliane  and
      Klenner, Alexander  and
      Madan, Sumit  and
      Ansari, Sam  and
      Bobic, Tamara  and
      Hoeng, Julia  and
      Hofmann--Apitius, Martin  and
      Peitsch, Manuel",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1910",
    pages = "80--88",
}
@inproceedings{ramirez-de-la-rosa-etal-2013-exploring,
    title = "Exploring Word Class N-grams to Measure Language Development in Children",
    author = "Ram{\'\i}rez de la Rosa, Gabriela  and
      Solorio, Thamar  and
      Montes, Manuel  and
      Liu, Yang  and
      Bedore, Lisa  and
      Pe{\~n}a, Elizabeth  and
      Iglesias, Aquiles",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1911",
    pages = "89--97",
}
@inproceedings{skeppstedt-2013-adapting,
    title = "Adapting a Parser to Clinical Text by Simple Pre-processing Rules",
    author = "Skeppstedt, Maria",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1912",
    pages = "98--101",
}
@inproceedings{jimeno-yepes-etal-2013-using,
    title = "Using the Argumentative Structure of Scientific Literature to Improve Information Access",
    author = "Jimeno Yepes, Antonio  and
      Mork, James  and
      Aronson, Alan",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1913",
    pages = "102--110",
}
@inproceedings{hassanali-etal-2013-using,
    title = "Using Latent {D}irichlet Allocation for Child Narrative Analysis",
    author = "Hassanali, Khairun-nisa  and
      Liu, Yang  and
      Solorio, Thamar",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1914",
    pages = "111--115",
}
@inproceedings{cohen-elhadad-2013-effect,
    title = "Effect of Out Of Vocabulary Terms on Inferring Eligibility Criteria for a Retrospective Study in {H}ebrew {EHR}",
    author = "Cohen, Raphael  and
      Elhadad, Michael",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1915",
    pages = "116--119",
}
@inproceedings{chakraborti-tendulkar-2013-parallels,
    title = "Parallels between Linguistics and Biology",
    author = "Chakraborti, Sutanu  and
      Tendulkar, Ashish",
    booktitle = "Proceedings of the 2013 Workshop on Biomedical Natural Language Processing",
    month = aug,
    year = "2013",
    address = "Sofia, Bulgaria",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/W13-1916",
    pages = "120--123",
}

repository: emorynlp/nlprankings

repo_name: emorynlp/nlprankings


text:
INCLUDE(QtPrlAdditions)

IF(Qt5Widgets_LIBRARY_DIRS)
  SET(Qt5Widgets_LIBRARY_DIR ${Qt5Widgets_LIBRARY_DIRS})
ENDIF()

IF(TPL_Qt5Widgets_LIBRARY_DIRS)
  SET(Qt5Widgets_LIBRARY_DIR ${TPL_Qt5Widgets_LIBRARY_DIRS})
ENDIF()

IF(Qt5Widgets_INCLUDE_DIRS)
  SET(Qt5Widgets_INCLUDE_DIR ${Qt5Widgets_INCLUDE_DIRS})
ENDIF()

IF(TPL_Qt5Widgets_INCLUDE_DIRS)
  SET(Qt5Widgets_INCLUDE_DIR ${TPL_Qt5Widgets_INCLUDE_DIRS})
ENDIF()

IF(TPL_Qt5Widgets_LIBRARIES)
  SET(Qt5Widgets_LIBRARIES ${TPL_Qt5Widgets_LIBRARIES})
ENDIF()
IF(NOT Qt5Widgets_REQUIRED_VERSION)
  SET(Qt5Widgets_REQUIRED_VERSION 5.1.0)
ENDIF()
MESSAGE("REQUIRED Qt5Widgets version: ${Qt5Widgets_REQUIRED_VERSION}")
FIND_PACKAGE(Qt5Widgets "${Qt5Widgets_REQUIRED_VERSION}")

if(NOT Qt5Widgets_FOUND)
  message("                             ____")
  message("                     __,-~~/~    `---.")
  message("                   _/_,---(      ,    )")
  message("               __ /        <    /   )  \\___")
  message("- ------===;;;'====------------------===;;;===----- -  -")
  message("                 \\/  ~\"~\"~\"~\"~\"~\\~\"~)~\"/")
  message("                 (_ (   \\  (     >    \\)")
  message("                  \\_( _ <         >_>'")
  message("                      ~ `-i' ::>|--\"")
  message("                          I;|.|.|")
  message("                         <|i::|i|`.")
  message("                         (` ^'\"`-' \")")
  MESSAGE(FATAL_ERROR "Couldn't find Qt5Widgets. This causes explosions.")
endif()
#
# Bug fix for Qt5 cmake configuration. They do not cache their variables for project use
#
SET(Qt5Core_QMAKE_EXECUTABLE ${Qt5Core_QMAKE_EXECUTABLE} CACHE STRING "")
SET(Qt5Core_MOC_EXECUTABLE ${Qt5Core_MOC_EXECUTABLE} CACHE STRING "")
SET(Qt5Core_RCC_EXECUTABLE ${Qt5Core_RCC_EXECUTABLE} CACHE STRING "")
SET(Qt5Widgets_UIC_EXECUTABLE ${Qt5Widgets_UIC_EXECUTABLE} CACHE STRING "")
MESSAGE(STATUS "UIC_EXECUTABLE: ${Qt5Widgets_UIC_EXECUTABLE}")

#
# Extra work to get the location correct
GET_TARGET_PROPERTY(Qt5Widgets_location Qt5::Widgets LOCATION)
GET_FILENAME_COMPONENT(Qt5Widgets_LIBRARY_DIRS "${Qt5Widgets_location}" DIRECTORY CACHE)
IF(NOT(Qt5Widgets_INCLUDE_DIRS))
  SET(Qt5Widgets_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS})
ENDIF()

IF(NOT(Qt5Widgets_LIBRARY_DIRS))
  SET(Qt5Widgets_LIBRARY_DIRS ${Qt5Widgets_LIBRARY_DIRS})
ENDIF()

IF(NOT(TPL_Qt5Widgets_INCLUDE_DIRS))
  SET(TPL_Qt5Widgets_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS})
ENDIF()

IF(NOT(TPL_Qt5Widgets_LIBRARY_DIRS))
  SET(TPL_Qt5Widgets_LIBRARY_DIRS ${Qt5Widgets_LIBRARY_DIRS})
ENDIF()
IF(CMAKE_SYSTEM_NAME STREQUAL "Darwin")
   SET(LIB_NAME QtWidgets)
ELSE()
   SET(LIB_NAME Qt5Widgets)
ENDIF()

SET(component ${LIB_NAME})
SET(component_lib_dir "${Qt5Widgets_LIBRARY_DIRS}")

QT_PRL_ADDITIONS(${component} ${component_lib_dir} ADDITIONAL_LIBS)
#remove duplicate entries list
IF(ADDITIONAL_LIBS)
   LIST(REMOVE_DUPLICATES ADDITIONAL_LIBS)
   MESSAGE(STATUS "Found additional libraries: ${ADDITIONAL_LIBS}")
ENDIF()
SET(TPL_Qt5Widgets_LIBRARIES Qt5::Widgets ${ADDITIONAL_LIBS} CACHE STRING "")
SET(TPL_Qt5Widgets_INCLUDE_DIRS ${TPL_Qt5Widgets_INCLUDE_DIRS} CACHE STRING "")

repository: lefebvre/ncareol

repo_name: lefebvre/ncareol


text:
---
---

@misc{kleinberg_age_2019,
	title = {Discimination in the Age of Algorithms},
	url = {https://arxiv.org/pdf/1902.03731.pdf},
	author = {Jon Kleinberg and Jens Ludwig and Sendhil Mullainathan and Cass R. Sunstein},
	year = {2019}
}

@misc{deloitte_2018,
	title = {2018 Global Mobile Consumer Survey},
	url = {https://www2.deloitte.com/content/dam/Deloitte/us/Documents/technology-media-telecommunications/us-tmt-global-mobile-consumer-survey-exec-summary-2018.pdf},
	author = {Deloitte},
	year = {2018}
}

@misc{macrumors_2014,
	title = {Wow, construction workers need not apply for fingerprint sensor},
	url = {https://forums.macrumors.com/threads/wow-construction-workers-need-not-apply-for-fingerprint-sensor.1700817/},
	author = {spinedoc77},
	year = {2014}
}

@misc{npr_2017,
	title = {A 'Forgotten History' Of How The U.S. Government Segregated America},
	url = {https://www.npr.org/2017/05/03/526655831/a-forgotten-history-of-how-the-u-s-government-segregated-america},
	author = {Gross, Terry},
	year = {2017}
}

@misc{ieee_2019,
	title = {In 2016, Microsoft's Racist Chatbot Revealed the Dangers of Online Conversation},
	url = {https://spectrum.ieee.org/tech-talk/artificial-intelligence/machine-learning/in-2016-microsofts-racist-chatbot-revealed-the-dangers-of-online-conversation},
	author = {Oscar Schwatz},
	year = {2019}
}

@misc{gebru_2018,
	title = {Datasheets for Datasets},
	url = {https://arxiv.org/abs/1803.09010},
	author = {Timnit Gebru and Jamie Morgenstern and Briana Vecchione and Jennifer Wortman Vaughan and Hanna Wallach and Hal Daumé III and Kate Crawford},
	year = {2018}
}

@misc{mitchell_2018,
	title = {Model Cards for Model Reporting},
	url = {https://arxiv.org/abs/1810.03993},
	author = {Margaret Mitchell and Simone Wu and Andrew Zaldivar and Parker Barnes and Lucy Vasserman and Ben Hutchinson and Elena Spitzer and Inioluwa Deborah Raji and Timnit Gebru},
	year = {2018}
}

@misc{savulescu_2020,
	title = {Equality or utility? Ethics and law of rationing ventilators},
	url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7167543/pdf/main.pdf},
	author = {Julian Savulescu and James Cameron and Dominic Wilkinson},
	year = {2020}
}

@misc{vallentyne_2003_1,
	title = {Justice in General: An Introduction},
	url = {https://klinechair.missouri.edu/docs/vol_1_justice_in_general.pdf},
	author = {Peter Vallentyne},
	year = {2003}
}

@InCollection{sep-equal-opportunity,
	author       =	{Arneson, Richard},
	title        =	{{Equality of Opportunity}},
	booktitle    =	{The {Stanford} Encyclopedia of Philosophy},
	editor       =	{Edward N. Zalta},
	howpublished =	{\url{https://plato.stanford.edu/archives/sum2015/entries/equal-opportunity/}},
	year         =	{2015},
	edition      =	{Summer 2015},
	publisher    =	{Metaphysics Research Lab, Stanford University}
}

@misc{heidari_2019,
	title = {A Moral Framework for Understanding Fair ML through Economic Models of Equality of Opportunity},
	url = {https://www.cs.cornell.edu/~hh732/heidari2019moral.pdf},
	author = {Hoda Heidari and Michele Loi and Krishna Gummadi and Michele Loi and Andreas Krause},
	year = {2019}
}

@misc{susskind_2018,
	title = {Future politics: Living together in a world transformed by tech},
	author = {Jamie Susskind},
	year = {2018}
}

@misc{Otterbacher_2017,
	title = {Competent men and warm women: Gender stereotypes and backlash in image search results},
	url = {https://doi.org/10.1145/3025453.3025727},
	author = {Otterbacher, J. and Bates, J. and Clough, P},
	year = {2017}
}

@misc{MachineBias_2016,
    title = {Machine Bias},
    url = {https://www.propublica.org/article/machine-bias-risk-assessments-in-criminal-sentencing},
    author = { Julia Angwin and Jeff Larson and Surya Mattu and Lauren Kirchner},
    year = {2016},
    publisher = {ProPublica}
}

@book{barocas-hardt-narayanan,
  title = {Fairness and Machine Learning},
  author = {Solon Barocas and Moritz Hardt and Arvind Narayanan},
  publisher = {fairmlbook.org},
  note = {\url{http://www.fairmlbook.org}},
  year = {2019}
}

@article{kleinberg2016inherent,
  added-at = {2019-12-09T16:06:43.000+0100},
  author = {Kleinberg, Jon and Mullainathan, Sendhil and Raghavan, Manish},
  biburl = {https://www.bibsonomy.org/bibtex/2491992e3d1065ccbd2c28fc0dad6194d/kirk86},
  description = {[1609.05807] Inherent Trade-Offs in the Fair Determination of Risk Scores},
  interhash = {a4dd08ef283298fbff3b5ac033b24528},
  intrahash = {491992e3d1065ccbd2c28fc0dad6194d},
  journal = {Proceedings of Innovations in Theoretical Computer Science},
  keywords = {bias calibration fairness readings},
  note = {cite arxiv:1609.05807Comment: To appear in Proceedings of Innovations in Theoretical Computer  Science (ITCS), 2017},
  timestamp = {2019-12-09T16:06:43.000+0100},
  title = {Inherent Trade-Offs in the Fair Determination of Risk Scores},
  url = {http://arxiv.org/abs/1609.05807},
  year = 2016
}

repository: tara-sullivan/fairness-book

repo_name: tara-sullivan/fairness-book

branch_name: refs/heads/main


text:
@inproceedings{RN1366,
 author = {Roupsard, Olivier and Van Den Meersche, Karel and Allinne, Clementine and Vaast, Philippe and Rapidel, Bruno and Avelino, Jacques and Jourdan, Christophe and Le Maire, Guerric and Bonnefond, Jean-Marc and Harmand, Jean-Michel and Dauzat, Jean and Albrecht, Alain and Chevallier, Tiphaine and Barthes, Bernard and Clement-Vidal, Anne and Gemez-Delgado, Federico and Charbonnier, Fabien and Benegas, Laura and Welsh, Kristen and Kinoshita, Rintaro and Vezy, Remi and Perez Molina, Junior and Kim, John H. and Taugourdeau, Simon and Defrenet, Elsa and Nespoulous, Jereme and Raneon, Florian and Guidat, F. and Cambou, Aurelie and Soma, Maxime and Mages, C. and Schnabel, Florian and Prieto, Iven and Picart, Delphine and Duthoit, Maxime and Rocheteau, Alain and Do, Frederic C. and de Melo Virginio Filho, Elias and Moussa, Roger and Le Bissonnais, Yves and Valentin, C. and Senchez-Murillo, Ricardo and Roumet, Catherine and Stokes, A. and Vierling, Lee A. and Eitel, Jan U.H. and Dreyer, Erwin and Saint-Andre, L. and Malmer, Anders and Loustau, Denis and Isaac, Marney E. and Martin, A. and Prieme, A. and Elberling, Bo and Madsen, M. and Robelo, A. and Robelo, Diego and Borgonovo, Carlos and Lehner, Peter and Ramirez, G. and Jara, M. and Acuna Vargas, R. and Barquero Aguilar, Alejandra and Fonseca, Carlos and Gay, Frederic},
 booktitle = {World Coffee Summit},
 pages = {11 p.},
 series = {World Coffee Summit, 2017-05-31/2017-06-03, San Salvador (El Salvador)},
 title = {Eight years studying ecosystem services in a coffee agroforestry observatory. Practical applications for the stakeholders},
 type = {Conference Proceedings},
 year = {2017}
}

repository: VEZY/WebSite

repo_name: VEZY/WebSite


text:
@article{Karner_2010,
  doi = {10.1097/ftd.0b013e3181d12f19},
  url = {https://doi.org/10.1097\%2Fftd.0b013e3181d12f19},
  year = 2010,
  month = {mar},
  publisher = {Ovid Technologies (Wolters Kluwer Health)},
  pages = {1},
  author = {Susanne Karner and Shaojun Shi and Christine Fischer and Elke Schaeffeler and Markus F Neurath and Klaus R Herrlinger and Ute Hofmann and Matthias Schwab},
  title = {Determination of 6-Thioguanosine Diphosphate and Triphosphate and Nucleoside Diphosphate Kinase Activity in Erythrocytes: Novel Targets for Thiopurine Therapy?},
  journal = {Therapeutic Drug Monitoring}
}

repository: larmcr/px

repo_name: larmcr/px


text:
@PACKAGE_INIT@

include("${CMAKE_CURRENT_LIST_DIR}/TeaTargets.cmake")
set(TEA_PHP_VERNUM "@TEA_PHP_VERNUM@")

check_required_components("@PROJECT_NAME@")

repository: DataDog/dd-trace-php

repo_name: DataDog/dd-trace-php

gha_language: PHP

extension: in


text:
.Mark {
    color: tomato;
}

.TitleLeftCell {
    margin: 20px 0 25px;
    text-align: center;
    line-height: 28px;
}

.pagerTitleCell {
    display: inline;
    margin-right: 20px;
}
.TitleLeftCell a {
    display: inline-block;
    height: 26px;
    margin-left: 5px;
    padding: 0 10px;
    color: #666;
    line-height: 26px;
    text-align: center;
    font-family: Arial,SimSun,"宋体";
    font-size: 14px;
    background-color: #fff;
    border: 1px solid #dedede;
}

.TitleLeftCell a.Mark {
    display: inline-block;
    height: 26px;
    margin-left: 5px;
    padding: 0 10px;
    color: #666;
    line-height: 26px;
    text-align: center;
    font-family: Arial,SimSun,"宋体";
    font-size: 14px;
    color: #fff;
    background-color: #428cdf;
    border: 1px solid #2a68bc;
}

.c {
    display: block;
}

.search {
    position: relative;
    z-index: 10;
    width: 660px;
    margin: 0 auto;
    text-align: left;
}

.search ul {
    margin-left: 0px;
    padding-left: 0px;
    -webkit-margin-before: 1em;
    -webkit-margin-after: 1em;
    -webkit-margin-start: 0px;
    -webkit-margin-end: 0px;
    -webkit-padding-start: 0px;
}

.search .nav li.cur {
    list-style: none;
    background: url(/static/KDNindexspr.png) center 25px no-repeat #fff;
}

.search .nav li {
    list-style: none;
    float: left;
    height: 26px;
    padding: 0 3px 5px;
    font: normal 14px/26px "SimSun","宋体";
}

.search .nav li.cur a {
    text-decoration: none;
    color: #fff;
    background-color: #3192e1;
    border-radius: 2px;
}

#advance_link a.cur {
    text-decoration: none;
    color: #fff;
    background-color: #3192e1;
    border-radius: 2px;
}

.search .nav li a {
    text-decoration: none;
    display: inline-block;
    color: #333;
    padding: 0 6px;
    line-height: 26px;
    cursor: pointer;
}

.search .text {
    float: left;
    width: 518px;
    height: 30px;
    padding: 5px 6px;
    line-height: 30px;
    font-size: 16px;
    border: 2px solid #3192e1;
    white-space: nowrap;
}

.search .mainbtn, .search .mainbtnActive {
    width: 115px;
    height: 44px;
    margin-left: 10px;
    _margin-left: 0;
    text-indent: -999em;
    overflow: hidden;
    background: url(/static/KDNindexspr.png) 0 -7px no-repeat #fff;
    border: 0 none;
    cursor: pointer;
    outline: none;
}

.search .mainbtn:hover {
    background-position: 0 -53px;
    outline: none;
}

.search .extend {
    margin: 20px auto 40px;
    color: #cfcfcf;
    text-align: center;
}

.search .extend a {
    margin: 0 8px;
    color: #555;
    font: normal 12px/2 "SimSun","宋体";
    text-decoration: none;
    cursor: pointer;
}

.latest {
    position: relative;
    z-index: 10;
    /*width: 660px;*/
    margin: 0 auto;
    text-align: left;
}

.detail-table-attr {
    vertical-align: text-top;
}
#ftCon {
    height: 50px;
    bottom: 47px;
    text-align: left;
    width: 100%;
    margin: 0 auto;
    z-index: 0;
    overflow: hidden;
}

.ftCon-Wrapper {
    overflow: hidden;
    margin: 0 auto;
    text-align: center;
}

#ftConw {
    text-align: center;
    margin-left: 0;
    color: #999;
    display: inline-block;
    line-height: 22px;
    position: relative;
    top: -2px;
    font: 12px arial;
    margin: 0;
    padding: 0
}

#ftConw p{
    margin: 0;
    padding: 0
}

#ftConw, #ftConw a {
    color: #999;
}

#lh #seth, #lh #setf {
    margin-left: 0;
}

#lh a {
    margin-left: 25px;
}

repository: Chen-Zhihui/zotero

repo_name: Chen-Zhihui/zotero


text:
@Misc{sp20-516-239-apple,
      author={{Apple}},
      title={Apple Environment Responsibility Report 2019},
      url={https://www.apple.com/environment/pdf/Apple_Environmental_Responsibility_Report_2019.pdf},
      howpublished={PDF},
      month=April,
      year=2019
    }

@Misc{sp20-516-239-biogas,
      author={{Wikipedia}},
      title={Biogas},
      url={https://en.wikipedia.org/wiki/Biogas},
      howpublished={Web Page},
      month=February,
      year=2020
    }

@Misc{sp20-516-239-biogas_fleet,
      author={{Fleet Publications}},
      title={Biogas: A safe, sustainable and economical solution to decarbonise fleets?},
      url={https://fleet.ie/biogas-a-safe-sustainable-and-economical-solution-to-decarbonise-fleets/},
      howpublished={Web Page},
      month=December,
      year=2019
    }


text:
@inproceedings{las-2009-sla,
 address = {Dagstuhl, Germany},
 annote = {Keywords: Service Level Agreement, Grid Computing, SLA Negotiation, SLA Policies, SLA Implementations},
 author = {Hans Michael Gerndt and Rana, Omer F. and von Laszewski, Gregor and Wolfgang Ziegler},
 booktitle = {Service Level Agreements in Grids},
 comment = {TODO},
 editor = {Hans Michael Gerndt and Omer F. Rana and Gregor von Laszewski and Wolfgang Ziegler},
 issn = {1862-4405},
 number = {09131},
 publisher = {Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, Germany},
 series = {Dagstuhl Seminar Proceedings},
 title = {09131 Abstracts Collection -- Service Level Agreements in Grids},
 url = {http://drops.dagstuhl.de/opus/volltexte/2009/2027},
 year = {2009}
}


text:
macro(configure_protobuf)
    message(STATUS "Configuring protobuf...")
    option(protobuf_BUILD_TESTS "" OFF)
    option(protobuf_BUILD_EXAMPLES "" OFF)
    option(protobuf_BUILD_SHARED_LIBS "" OFF)
    option(protobuf_BUILD_PROTOC_BINARIES "" ON)
    add_subdirectory(${PROJECT_SOURCE_DIR}/third_party/protobuf/cmake)
endmacro()

repository: mathpopo/DNNLibrary

repo_name: mathpopo/DNNLibrary


text:
Automatically generated by Mendeley Desktop 1.19.4
Any changes to this file will be lost if it is regenerated by Mendeley.

BibTeX export options can be customized via Preferences -> BibTeX in Mendeley Desktop

@article{Wirth2013,
abstract = {{\textcopyright} 2013 C. Wirth {\&} J. F{\"{u}}rnkranz. Reinforcement learning algorithms are usually hard to use for non expert users. It is required to consider several aspects like the definition of state-, action- And reward-space as well as the algorithms hyperparameters. Preference based approaches try to address these problems by omitting the requirement for exact rewards, replacing them with preferences over solutions. Some algorithms have been proposed within this framework, but they are usually requiring parameterized policies which is again a hinderance for their application. Monte Carlo based approaches do not have this restriction and are also model free. Hence, we present a new preference-based reinforcement learning algorithm, utilizing Monte Carlo estimates. The main idea is to estimate the relative Q-value of two actions for the same state within a every-visit framework. This means, preferences are used to estimate the Q-value of state-action pairs within a trajectory, based on the feedback concerning the complete trajectory. The algorithm is evaluated on three common benchmark problems, namely mountain car, inverted pendulum and acrobot, showing its advantage over a closely related algorithm which is also using estimates for intermediate states, but based on a probability theorem. In comparison to SARSA($\lambda$), EPMC converges somewhat slower, but computes policies that are almost as good or better.},
author = {Wirth, C. and F{\"{u}}rnkranz, J.},
file = {:Users/sepmein/Qsync/Papers/Wirth, F{\"{u}}rnkranz{\_}2013{\_}EPMC Every visit preference Monte Carlo for reinforcement learning.pdf:pdf},
issn = {15337928 15324435},
journal = {Journal of Machine Learning Research},
keywords = {Every visit,Monte Carlo,Preference learning,Reinforcement learning},
pages = {483--497},
title = {{EPMC: Every visit preference Monte Carlo for reinforcement learning}},
volume = {29},
year = {2013}
}

repository: sepmein/references

repo_name: sepmein/references


text:
DESCRIPTION = "Packagegroup for ECA packages"
LICENSE = "MIT"
PACKAGE_ARCH = "${MACHINE_ARCH}"
DEPENDS = "virtual/kernel"
PR = "r2"

inherit packagegroup

PACKAGES = "\
    packagegroup-eca \
"

MACHINE_ESSENTIAL_EXTRA_RDEPENDS ?= ""
MACHINE_ESSENTIAL_EXTRA_RRECOMMENDS ?= ""

VIRTUAL-RUNTIME_dev_manager ?= "udev"
VIRTUAL-RUNTIME_init_manager ?= "sysvinit"
VIRTUAL-RUNTIME_initscripts ?= "initscripts"
VIRTUAL-RUNTIME_keymaps ?= "keymaps "

BLUEZ_PACKAGES="\
    bluez5 \
    bluez5-testtools \
"

CONNMAN_PACKAGES="\
    connman \
    connman-init-systemd \
    connman-client \
    connman-tests \
    connman-tools \
"

NFC_PACKAGES="\
    neard \
"

OFONO_PACKAGES="\
    ofono \
    ofono-tests \
    mobile-broadband-provider-info \
    usb-modeswitch \
"

UI_PACKAGES="\
    webpy \
    eca-web \
    connman-ncurses \
"

UTIL_PACKAGES="\
    curl \
    less \
    avahi-daemon \
    iproute2 \
    iproute2-tc \
    tcpdump \
    screen \
    bridge-utils \
    lsof \
    rsync \
    socat \
    links \
    iw \
    mosh \
    macchanger \
    netcat-openbsd \
    python-scapy \
    tzdata \
    bind-utils \
    usbutils \
    wireless-tools \
    ethtool \
    omping \
    trace-cmd \
    nmap \
"

# Try to install as many wlan firmwares as possible
WLAN_FIRMWARE="\
    linux-firmware-ralink \
    linux-firmware-rtl8192ce \
    linux-firmware-rtl8192cu \
    linux-firmware-rtl8192su \
    linux-firmware-sd8686 \
    linux-firmware-wl12xx \
"

# IEEE 802.15.4 needs userspace helpers
WPAN_PACKAGES="\
    wpan-tools \
"

RDEPENDS_packagegroup-eca = "\
    base-files \
    base-passwd \
    busybox \
    ${VIRTUAL-RUNTIME_initscripts} \
    ${@base_contains("MACHINE_FEATURES", "keyboard", "${VIRTUAL-RUNTIME_keymaps}", "", d)} \
    netbase \
    ${VIRTUAL-RUNTIME_init_manager} \
    ${VIRTUAL-RUNTIME_dev_manager} \
    ${VIRTUAL-RUNTIME_update-alternatives} \
    ${MACHINE_ESSENTIAL_EXTRA_RDEPENDS} \
    procps \
    packagegroup-base \
    initscripts \
    systemd-compat-units \
    kernel-modules \
    linux-firmware \
    \
    ${BLUEZ_PACKAGES} \
    ${CONNMAN_PACKAGES} \
    ${NFC_PACKAGES} \
    ${OFONO_PACKAGES} \
    ${UI_PACKAGES} \
    ${UTIL_PACKAGES} \
    ${WLAN_FIRMWARE} \
    ${WPAN_PACKAGES} \
"

RRECOMMENDS_${PN} = "\
    ${MACHINE_ESSENTIAL_EXTRA_RRECOMMENDS} \
"

repository: olegcherpak/meta-eca

repo_name: olegcherpak/meta-eca


text:
@book{
wollbuch,
title = {Grundlagen der Datenanalyse mit R: eine anwendungsorientierte Einführung},
series = {Statistik und ihre Anwendungen},
author = {Wollschläger, Daniel},
address = {Heidelberg u.a.},
publisher = {Springer},
year = {2010},
keywords ={R (Computer program language), Mathematical statistics},
isbn ={3642257992, 9783642257995},
}

repository: DennisKubitza/LaTeX-Kurs

repo_name: DennisKubitza/LaTeX-Kurs


text:
@article{Tang-2020-Have,
    title = "Have satellite precipitation products improved over last two decades? A comprehensive comparison of GPM IMERG with nine satellite and reanalysis datasets",
    author = "Tang, Guoqiang  and
      Clark, Martyn P.  and
      Papalexiou, Simon Michael  and
      Ma, Ziqiang  and
      Hong, Yang",
    journal = "Remote Sensing of Environment, Volume 240",
    volume = "240",
    year = "2020",
    publisher = "Elsevier BV",
    url = "https://aclanthology.org/G20-138001",
    doi = "10.1016/j.rse.2020.111697",
    pages = "111697",
    abstract = "Abstract The Integrated Multi-satellitE Retrievals for Global Precipitation Measurement (IMERG) produces the latest generation of satellite precipitation estimates and has been widely used since its release in 2014. IMERG V06 provides global rainfall and snowfall data beginning from 2000. This study comprehensively analyzes the quality of the IMERG product at daily and hourly scales in China from 2000 to 2018 with special attention paid to snowfall estimates. The performance of IMERG is compared with nine satellite and reanalysis products (TRMM 3B42, CMORPH, PERSIANN-CDR, GSMaP, CHIRPS, SM2RAIN, ERA5, ERA-Interim, and MERRA2). Results show that the IMERG product outperforms other datasets, except the Global Satellite Mapping of Precipitation (GSMaP), which uses daily-scale station data to adjust satellite precipitation estimates. The monthly-scale station data adjustment used by IMERG naturally has a limited impact on estimates of precipitation occurrence and intensity at the daily and hourly time scales. The quality of IMERG has improved over time, attributed to the increasing number of passive microwave samples. SM2RAIN, ERA5, and MERRA2 also exhibit increasing accuracy with time that may cause variable performance in climatological studies. Even relying on monthly station data adjustments, IMERG shows good performance in both accuracy metrics at hourly time scales and the representation of diurnal cycles. In contrast, although ERA5 is acceptable at the daily scale, it degrades at the hourly scale due to the limitation in reproducing the peak time, magnitude and variation of diurnal cycles. IMERG underestimates snowfall compared with gauge and reanalysis data. The triple collocation analysis suggests that IMERG snowfall is worse than reanalysis and gauge data, which partly results in the degraded quality of IMERG in cold climates. This study demonstrates new findings on the uncertainties of various precipitation products and identifies potential directions for algorithm improvement. The results of this study will be useful for both developers and users of satellite rainfall products.",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications


text:
@inproceedings{Ateniese:2005fk,
  abstract_url = {http://eprint.iacr.org/2005/028},
  author = {Ateniese, Giuseppe and Fu, Kevin and Green, Matthew and Hohenberger, Susan},
  booktitle = {Proceedings of the Symposium on Network and Distributed System Security (NDSS)},
  conference_url = {http://www.isoc.org/isoc/conferences/ndss},
  keywords = {Security},
  organization = {ISOC},
  date-added = {2006-08-29 12:21:25 -0400},
  date-modified = {2006-10-01 12:56:50 -0400},
  keywords = {Security, Crypto, Operating Systems},
  month = feb,
  monthnum = 2,
  venue = {NDSS (Symposium on Network and Distributed System Security)},
  title = {Improved proxy re-encryption schemes with applications to secure distributed storage},
  url = {https://spqr.eecs.umich.edu/papers/ateniese-proxy-reenc-ndss05.pdf},
  year = 2005
}


text:
@article{cuccaro2004adder,
  title={A new quantum ripple-carry addition circuit},
  author={Cuccaro, Steven A and Draper, Thomas G and Kutin, Samuel A and Moulton, David Petrie},
  journal={arXiv preprint quant-ph/0410184},
  year={2004}
}

@article{draper2004lookaheadadder,
  Author = {Thomas G. Draper and Samuel A. Kutin and Eric M. Rains and Krysta M. Svore},
  Title = {A logarithmic-depth quantum carry-lookahead adder},
  Year = {2004},
  Eprint = {arXiv:quant-ph/0406142},
  Howpublished = {Quant. Inf. Comp. Vol. 6, No. 4-5, pp. 351-369 (2006)},
  journal={Quant. Inf. Comp. Vol. 6, No. 4-5, pp. 351-369 (2006)},
}

@article{gossett1998carrysave,
  title={Quantum carry-save arithmetic},
  author={Gossett, Phil},
  journal={arXiv preprint quant-ph/9808061},
  year={1998}
}

@misc{shirriff2020reverseengineer8008,
  title = {Reverse-engineering the carry-lookahead circuit in the Intel 8008 processor},
  author={Ken Shirriff},
  howpublished = {\url{http://www.righto.com/2020/11/reverse-engineering-carry-lookahead.html}},
  note = {Accessed: Nov 17, 2020}
}

@article{bravyi2005magicstate,
  title={Universal quantum computation with ideal Clifford gates and noisy ancillas},
  author={Bravyi, Sergey and Kitaev, Alexei},
  journal={Physical Review A},
  volume={71},
  number={2},
  pages={022316},
  year={2005},
  publisher={APS}
}

@article{gidney2019catalyzed,
  title={Efficient magic state factories with a catalyzed $|CCZ\rangle$ to $2|T\rangle$ transformation},
  author={Gidney, Craig and Fowler, Austin G},
  journal={Quantum},
  volume={3},
  pages={135},
  year={2019},
  publisher={Verein zur F{\"o}rderung des Open Access Publizierens in den Quantenwissenschaften}
}

@article{litinski2019magicnotcostly,
  title={Magic state distillation: Not as costly as you think},
  author={Litinski, Daniel},
  journal={Quantum},
  volume={3},
  pages={205},
  year={2019},
  publisher={Verein zur F{\"o}rderung des Open Access Publizierens in den Quantenwissenschaften}
}

@article{gidney2019autoccz,
  title={Flexible layout of surface code computations using AutoCCZ states},
  author={Gidney, Craig and Fowler, Austin G},
  journal={arXiv preprint arXiv:1905.08916},
  year={2019}
}

@article{gidney2018halving,
  title={Halving the cost of quantum addition},
  author={Gidney, Craig},
  journal={Quantum},
  volume={2},
  pages={74},
  year={2018},
  publisher={Verein zur F{\"o}rderung des Open Access Publizierens in den Quantenwissenschaften}
}

@article{fowler2012timeoptimal,
  title={Time-optimal quantum computation},
  author={Fowler, Austin G},
  journal={arXiv preprint arXiv:1210.4626},
  year={2012}
}

@article{lee2020hypercontractionchemistry,
  title={Even more efficient quantum computations of chemistry through tensor hypercontraction},
  author={Lee, Joonho and Berry, Dominic and Gidney, Craig and Huggins, William J and McClean, Jarrod R and Wiebe, Nathan and Babbush, Ryan},
  journal={arXiv preprint arXiv:2011.03494},
  year={2020}
}

@article{brent1982adder,
  title={A regular layout for parallel adders},
  author={Brent, Richard P and Kung, Hsiang T},
  journal={IEEE transactions on Computers},
  volume={3},
  pages={260--264},
  year={1982},
  publisher={IEEE}
}

@article{kogge1973adder,
  title={A parallel algorithm for the efficient solution of a general class of recurrence equations},
  author={Kogge, Peter M and Stone, Harold S},
  journal={IEEE transactions on computers},
  volume={100},
  number={8},
  pages={786--793},
  year={1973},
  publisher={IEEE}
}

@article{fowler2012surfacereview,
  title={Surface codes: Towards practical large-scale quantum computation},
  author={Fowler, Austin G and Mariantoni, Matteo and Martinis, John M and Cleland, Andrew N},
  journal={Physical Review A},
  volume={86},
  number={3},
  pages={032324},
  year={2012},
  publisher={APS}
}

@article{gidney2019approximate,
  title={Approximate encoded permutations and piecewise quantum adders},
  author={Gidney, Craig},
  journal={arXiv preprint arXiv:1905.08488},
  year={2019}
}

@inproceedings{shor1994algorithms,
  title={Algorithms for quantum computation: discrete logarithms and factoring},
  author={Shor, Peter W},
  booktitle={Proceedings 35th annual symposium on foundations of computer science},
  pages={124--134},
  year={1994},
  organization={Ieee}
}

@article{gidney2019factor,
  title={How to factor 2048 bit rsa integers in 8 hours using 20 million noisy qubits},
  author={Gidney, Craig and Eker{\aa}, Martin},
  journal={arXiv preprint arXiv:1905.09749},
  year={2019}
}

@article{draper2000qftaddition,
  title={Addition on a quantum computer},
  author={Draper, Thomas G},
  journal={arXiv preprint quant-ph/0008033},
  year={2000}
}

@inproceedings{mogensen2019lookahead,
  title={Reversible in-place carry-lookahead addition with few ancillae},
  author={Mogensen, Torben {\AE}gidius},
  booktitle={International Conference on Reversible Computation},
  pages={224--237},
  year={2019},
  organization={Springer}
}

@article{thapliyal2020lookahead,
  title={T-count and Qubit Optimized Quantum Circuit Designs of Carry Lookahead Adder},
  author={Thapliyal, Himanshu and Mu{\~n}oz-Coreas, Edgard and Khalus, Vladislav},
  journal={arXiv preprint arXiv:2004.01826},
  year={2020}
}

@article{oonishi2020efficient,
  title={Efficient Construction of a Control Modular Adder on a Carry-Lookahead Adder Using Relative-phase Toffoli Gates},
  author={Oonishi, Kento and Tanaka, Tomoki and Uno, Shumpei and Satoh, Takahiko and Van Meter, Rodney and Kunihiro, Noboru},
  journal={arXiv preprint arXiv:2010.00255},
  year={2020}
}

repository: Strilanc/quantum-block-lookahead-adder

repo_name: Strilanc/quantum-block-lookahead-adder


text:
@article{RN1200,
 author = {Abumazwed, A. and Kubo, W. and Tanaka, T. and Kirk, A. G.},
 doi = {10.1364/Oe.25.024803},
 issn = {1094-4087},
 journal = {Optics Express},
 number = {20},
 pages = {24803-24815},
 title = {Improved self-referenced biosensing with emphasis on multiple-resonance nanorod sensors},
 type = {Journal Article},
 url = {<Go to ISI>://WOS:000412048500129},
 volume = {25},
 year = {2017}
}

repository: andrewgkirk/website

repo_name: andrewgkirk/website

gha_language: Jupyter Notebook


text:
@inproceedings{lanari2016FLIP,
  title={Boundedness Approach to Gait Planning for the Flexible Linear Inverted Pendulum Model},
  author={Lanari, Leonardo and Urbann, Oliver and Hutchinson, Seth and Schwarz, Ingmar},
  booktitle={Robot World Cup},
  pages={58--70},
  year={2016},
  organization={Springer}
}

@inproceedings{scianca2016intrinsically,
  title={Intrinsically stable MPC for humanoid gait generation},
  author={Scianca, Nicola and Cognetti, Marco and De Simone, Daniele and Lanari, Leonardo and Oriolo, Giuseppe},
  booktitle={Humanoid Robots (Humanoids), 2016 IEEE-RAS 16th International Conference on},
  pages={601--606},
  year={2016},
  organization={IEEE}
}

@inproceedings{urbann2015flexible,
  title={Flexible linear inverted pendulum model for cost-effective biped robots},
  author={Urbann, Oliver and Schwarz, Ingmar and Hofmann, Matthias},
  booktitle={Humanoid Robots (Humanoids), 2015 IEEE-RAS 15th International Conference on},
  pages={128--131},
  year={2015},
  organization={IEEE}
}

@inproceedings{lanari2014boundedness,
  title={Boundedness issues in planning of locomotion trajectories for biped robots},
  author={Lanari, Leonardo and Hutchinson, Seth and Marchionni, Luca},
  booktitle={Humanoid Robots (Humanoids), 2014 14th IEEE-RAS International Conference on},
  pages={951--958},
  year={2014},
  organization={IEEE}
}


text: .notificationList ul.notifications{list-style-type:none;padding-left:0}.notificationList ul.notifications li{font-weight:bold;color:#006b97 !important}

repository: DeabitTech/client

repo_name: DeabitTech/client


text:
body {
  padding: 50px;
  font: 14px "Lucida Grande", Helvetica, Arial, sans-serif;
}

a {
  color: #00B7FF;
}

ul#tiqav {
  list-style: none;
}

ul#tiqav li {
  padding : 5px;
  background-color: #FFBBBB;
  float: left;
}

#chat {
  clear: left;
}

#chat .icon {
  margin-right: 4px;
}

repository: shokai/tiqav-chat

repo_name: shokai/tiqav-chat


text:
# Distributed under the OSI-approved BSD 3-Clause License.  See accompanying
# file Copyright.txt or https://cmake.org/licensing for details.

include(FindPackageHandleStandardArgs)

#------------------------------------------------------------------------------#

set(_ITTNOTIFY_PATH_HINTS)

#------------------------------------------------------------------------------#
# function to check for hints in environment
function(_ittnotify_check_var)
    foreach(_VAR ${ARGN})
        if(NOT "$ENV{${_VAR}}" STREQUAL "")
            list(APPEND _HINTS "$ENV{${_VAR}}")
        endif()
        if(NOT "${${_VAR}}" STREQUAL "")
            list(APPEND _HINTS "${${_VAR}}")
        endif()
    endforeach()
    set(_ITTNOTIFY_PATH_HINTS ${_ITTNOTIFY_PATH_HINTS} ${_HINTS} PARENT_SCOPE)
endfunction()

#------------------------------------------------------------------------------#

_ittnotify_check_var(VTUNE_AMPLIFIER_DIR VTUNE_AMPLIFIER_XE_DIR)
_ittnotify_check_var(VTUNE_AMPLIFIER_2019_DIR VTUNE_AMPLIFIER_XE_2019_DIR)
_ittnotify_check_var(VTUNE_AMPLIFIER_2018_DIR VTUNE_AMPLIFIER_XE_2018_DIR)
_ittnotify_check_var(VTUNE_AMPLIFIER_2017_DIR VTUNE_AMPLIFIER_XE_2017_DIR)

#------------------------------------------------------------------------------#

find_path(ITTNOTIFY_ROOT_DIR
    NAMES include/ittnotify.h
    HINTS ${_ITTNOTIFY_PATH_HINTS}
    PATHS ${_ITTNOTIFY_PATH_HINTS}
)

#------------------------------------------------------------------------------#

find_path(ITTNOTIFY_INCLUDE_DIR
    NAMES ittnotify.h
    PATH_SUFFIXES include
    HINTS ${ITTNOTIFY_ROOT_DIR} ${_ITTNOTIFY_PATH_HINTS}
    PATHS ${ITTNOTIFY_ROOT_DIR} ${_ITTNOTIFY_PATH_HINTS}
)

#------------------------------------------------------------------------------#

find_library(ITTNOTIFY_LIBRARY
    NAMES ittnotify
    PATH_SUFFIXES lib lib64 lib32
    HINTS ${ITTNOTIFY_ROOT_DIR} ${_ITTNOTIFY_PATH_HINTS}
    PATHS ${ITTNOTIFY_ROOT_DIR} ${_ITTNOTIFY_PATH_HINTS}
)

#------------------------------------------------------------------------------#

if(ITTNOTIFY_INCLUDE_DIR)
    set(ITTNOTIFY_INCLUDE_DIRS ${ITTNOTIFY_INCLUDE_DIR})
endif()

#------------------------------------------------------------------------------#

if(ITTNOTIFY_LIBRARY)
    set(ITTNOTIFY_LIBRARIES ${ITTNOTIFY_LIBRARY})
endif()

#------------------------------------------------------------------------------#

mark_as_advanced(ITTNOTIFY_ROOT_DIR ITTNOTIFY_INCLUDE_DIR ITTNOTIFY_LIBRARY)
find_package_handle_standard_args(ittnotify DEFAULT_MSG
    ITTNOTIFY_ROOT_DIR ITTNOTIFY_INCLUDE_DIR ITTNOTIFY_LIBRARY)

#------------------------------------------------------------------------------#

unset(_ITTNOTIFY_PATH_HINTS)

#------------------------------------------------------------------------------#

repository: bingyingL/PTL

repo_name: bingyingL/PTL