text:
% ------------------------------------------------------------------------
% BIBLIOGRAPHY FILE
- CAISE
% ------------------------------------------------------------------------
@book{Pierce,
	author = {Pierce, Benjamin C.},
	title = {Types and Programming Languages},
	year = {2002},
	isbn = {0-262-16209-1},
	publisher = {MIT Press},
	address = {Cambridge, MA, USA},
}

@Inbook{SBMF2012,
	author="Jim Davies, Jeremy Gibbons, David Milward, James Welsh ",
	title="Formal Methods: Foundations and Applications − 15th Brazilian Symposium‚ SBMF 2012",
	year="2012",
	publisher="Springer",
	address="Berlin, Heidelberg",
	pages="99−114",
	isbn="978−3−642−33295−1"
}

@Inbook{Frank2013,
	author="Frank, Ulrich",
	title="Domain-Specific Modeling Languages: Requirements Analysis and Design Guidelines",
	bookTitle="Domain Engineering: Product Lines, Languages, and Conceptual Models",
	year="2013",
	publisher="Springer Berlin Heidelberg",
	address="Berlin, Heidelberg",
	pages="133--157",
	isbn="978-3-642-36654-3",
	doi="10.1007/978-3-642-36654-3_6",
	url="https://doi.org/10.1007/978-3-642-36654-3_6"
}

@Article{MDRHL7,
	author = {Ulrich  And Kock AK And  Duhm-Harbeck P And  Habermann JK And Ingenerf J },
	title = {Metadata Repository for Improved Data Sharing and Reuse Based on HL7 FHIR },
	year = "2016",
	journal = {Studies in Health Technology and Informatics},
	volume = {228},
	pages = { 162-166},
}

@electronic{TRUD2017,
	author = {NHSEngland},
	title = {Technology Reference data Update Distribution},

	url="https://isd.digital.nhs.uk/trud3"
}

@electronic{ISO11179,
	author = {International Standards Organisation},
	title = {International Standard for Metadata Registries},
	url="http://metadata-standards.org/11179/",
	howpublished = "\url{http://metadata-standards.org/11179/}",
}

% ------------------------------------------------------------------------

% BIBLIOGRAPHY FILE
- LEGACY
% ------------------------------------------------------------------------

@electronic{ISOFORMS,

	author = {{International Standards Organisation}},

	title = {International {S}tandard for {M}etadata {R}egistries},

	url="http://metadata-standards.org/19763/",

}

@electronic{NIHR,

	title = { National Institute for Health Research},

	url="http://www.nihr.ac.uk/"

}

@electronic{MDA,

	author = {{Object Modelling Group}},

	title = {Model Driven Architecture},

	url="http://www.omg.org/mda/"

}

@electronic{OMG,

	author = {{Object Modelling Group}},

	title = {Object Modelling Group},

	url="http://www.omg.org/"

}

@electronic{COSD,

	author = {{National Cancer Intelligence Network}},

	title = { Cancer Outcomes and Services Dataset},

	url="http://www.ncin.org.uk/collecting_and_using_data/data_collection/cosd/"

}

@electronic{ICD10,

	author = {{National Center for Health Statistics (NCHS)}},

	title = {International Classification of Diseases},

	url="https://www.cdc.gov/nchs/icd/icd10cm.htm"

}

@electronic{GEL,

	title = {Genomics England Limited},

	year = 2014,

	url="http://www.genomicsengland.co.uk/"

}

@electronic{UML,

	author = {OMG},

	title = {{U}nified {M}odelling {L}anguage},

	url="http://www.uml.org"

}

@inproceedings{crichton2009metadata,

	title={Metadata-driven software for clinical trials},

	author={Crichton, Charles and Davies, Jim and Gibbons, Jeremy and Harris, Steve and Tsui, Andrew and Brenton, James},

	booktitle={Proceedings of the 2009 ICSE Workshop on Software Engineering in Health Care},

	pages={1--11},

	year={2009},

	organization={IEEE Computer Society}

}

%-----------------------------------------------------------------------

@electronic{swrl,

	author = {W3C},

	title = {SWRL: A Semantic Web Rule Language Combining OWL and RuleML},

	url="http://www.w3.org/Submission/SWRL/",

	howpublished = "\url{http://www.w3.org/Submission/SWRL/}",

}

@electronic{jena,

	author = {W3C},

	title = {Apache Jena is a Java framework for building Semantic Web applications.},

	url="http://jena.apache.org/",

	howpublished = "\url{http://jena.apache.org/}",

}

@Article{MOFOnt,

	author = {Ralf Gitzel and Ingo Ott and Martin Schader},

	title = {Ontological Extension to the MOF Metamodel as a Basis for Code Generation },

	year = "2007",

	journal = {The Computer Journal},

	publisher = {British Computer Society},

	volume = {50},

	pages = { 93-115},

}

@electronic{XText,

	author = {Eclipse},

	title = {XText : Eclipse Project},

	year = 2008,

	url="https://eclipse.org/Xtext/"

}

@electronic{MOF242,

	author = {OMG},

	title = {OMG Meta Object Facility (MOF) Core Specification},

	year = 2014,

	url="http://www.omg.org/spec/MOF/2.4.2/PDF/"

}

@book{FowlerDSL,

	author = {Fowler, Martin},

	title = {Domain Specific Languages},

	year = {2010},

	isbn = {0321712943, 9780321712943},

	edition = {1st},

	publisher = {Addison-Wesley Professional},

}

@electronic{CWM,

	author = {OMG},

	title = {Common Warehouse Metamodel, v1.1 },

	year = 2003,

	url="http://www.omg.org/spec/CWM/1.1/PDF/formal-03-03-02.pdf"

}

@electronic{ECORE,

	author = {Eclipse},

	title = {Ecore Tools },

	year = 2008,

	url="http://eclipse.org/ecoretools"

}

@electronic{XSLT,

	author = {W3C},

	title = {{XSL} {T}ransformations ({XSLT}) Version 1.0},

	year = 1999,

	url="http://www.w3.org/TR/xslt"

}

@electronic{OCL,

	author = {OMG},

	title = {Object Constraint Language (OCL), Version 2.4 },

	year = 2014,

	url="http://www.omg.org/spec/OCL/2.4/PDF/formal-14-02-03.pdf"

}

@electronic{JSON,

	author = {Douglas Crockford},

	title = {JSON - Javascript Object Notation },

	year = {2014},

	url={"http://json.org/''}

}

@electronic{ATL,

	author = {INRIA},

	title = {Atlas {T}ransformation {L}anguage },

	year = 2011,

	url="http://www.eclipse.org/atl/"

}

@electronic{QVT,

	author = {OMG},

	title = {Meta {O}bject {F}acility ({MOF}) 2.0 {Q}uery/{V}iew/{T}ransformation, V1.1 },

	year = 2011,

	url="http://www.omg.org/spec/QVT/1.1/PDF/formal-11-01-01.pdf"

}

@url{CDISC,

	Date-Modified = {2012-08-09 12:53:39 +0000},

	Lastchecked = {August 2012},

	Title = {Clinical Data Interchange Standards Consortium},

	Url = {http://www.cdisc.org/},

	Bdsk-Url-1 = {http://www.cdisc.org/}}

@url{CDISC-ODM,

	Date-Modified = {2012-08-09 12:53:39 +0000},

	Lastchecked = {August 2012},

	Title = {{C}{D}{I}{S}{C} Operational Data Model},

	Url = {http://www.cdisc.org/odm},

	Bdsk-Url-1 = {http://www.cdisc.org/odm}}

@url{XLINK,

	Date-Modified = {2012-08-09 12:53:39 +0000},

	Lastchecked = {August 2012},

	Title = {XML Linking Language (XLink) Version 1.0},

	Url = {http://www.w3.org/TR/xlink/},

	Bdsk-Url-1 = {http://www.w3.org/TR/xlink/}}

@url{XMLDSig,

	Date-Modified = {2012-08-09 12:53:39 +0000},

	Lastchecked = {August 2012},

	Title = {XML Signature Syntax and Processing (Second Edition)},

	Url = {http://www.w3.org/TR/xmldsig-core/},

	Bdsk-Url-1 = {http://www.w3.org/TR/xmldsig-core/}}

%%%% ISO11179 ontologies %%%%%

@article{Sinaci2013784,

	title = "A federated semantic metadata registry framework for enabling interoperability across clinical research and care domains ",

	journal = "Journal of Biomedical Informatics ",

	volume = "46",

	number = "5",

	pages = "784 - 794",

	year = "2013",

	note = "",

	issn = "1532-0464",

	doi = "http://dx.doi.org/10.1016/j.jbi.2013.05.009",

	url = "http://www.sciencedirect.com/science/article/pii/S1532046413000750",

	author = "A. Anil Sinaci and Gokce B. Laleci Erturkmen",

	keywords = "Interoperability",

	keywords = "Metadata Registry/Repository",

	keywords = "ISO/IEC 11179",

	keywords = "Semantic web",

	keywords = "Linked Data",

	keywords = "Common Data Elements "

}

%%%%%%%%%%%%%%%% ontology repositories %%%%%%%%%%%%%%%%%%%

@electronic{LOV,

	Lastchecked = {May 2015},

	Title = {Linked {O}pen {V}ocabularies},

	Url = {http://lov.okfn.org/dataset/lov}

}

@electronic{Stanbol,

	Lastchecked = {May 2015},

	Title = {Apache {S}tanbol},

	Url = {https://stanbol.apache.org/docs/trunk/components/ontologymanager}

}

@electronic{Kaon2,

	Lastchecked = {May 2015},

	Title = {Kaon2},

	Url = {http://kaon2.semanticweb.org}

}

@Article{pmid25405066,

	Author="Jeong, S.  and Kim, H. H.  and Park, Y. R.  and Kim, J. H. ",

	Title="{{C}linical {D}ata {E}lement {O}ntology for {U}nified {I}ndexing and {R}etrieval of {D}ata {E}lements across {M}ultiple {M}etadata {R}egistries}",

	Journal="Healthcare Informatics Research",

	Year="2014",

	Volume="20",

	Number="4",

	Pages="295--303",

	Month="Oct"

}

@Article{pmid22211181,

	Author="Tao, C.  and Jiang, G.  and Wei, W.  and Solbrig, H. R.  and Chute, C. G. ",

	Title="{{T}owards {S}emantic-{W}eb {B}ased {R}epresentation and {H}armonization of {S}tandard {M}eta-data {M}odels for {C}linical {S}tudies}",

	Journal="AMIA Summits on Translational Science Proceedings",

	Year="2011",

	Volume="2011",

	Pages="59--63"

}

@book{poole03,

	title={Common Warehouse Metamodel Developer's Guide},

	author={Poole, John and Chang, Dan and Tolbert, Douglas and Mellor, David},

	volume={24},

	year={2003},

	publisher={John Wiley \& Sons}

}

@book{kim02,

	author = {Kimball, Ralph and Ross, Margy},

	title = {The  Data Warehouse Toolkit: The Complete Guide to Dimensional Modeling},

	year = {2002},

	isbn = {0471200247, 9780471200246},

	edition = {2nd},

	publisher = {John Wiley \& Sons, Inc.},

	address = {New York, NY, USA},

}

@book{inm92,

	author = {Inmon, W. H.},

	title = {Building the Data Warehouse},

	year = {1992},

	isbn = {0-89435-404-3},

	publisher = {QED Information Sciences, Inc.},

	address = {Wellesley, MA, USA},

}

@article{harr09,

	title={Research electronic data capture ({REDCap})---A metadata-driven methodology and workflow process for providing translational research informatics support},

	author={Harris, Paul A and Taylor, Robert and Thielke, Robert and Payne, Jonathon and Gonzalez, Nathaniel and Conde, Jose G},

	journal={Journal of Biomedical Informatics},

	volume={42},

	number={2},

	pages={377--381},

	year={2009},

	publisher={Elsevier}

}

@article{pay12,

	title={Biomedical Knowledge Integration},

	author={Payne, Philip RO},

	journal={PLoS Computational Biology},

	volume={8},

	number={12},

	year={2012},

	publisher={Public Library of Science}

}

@article{doli06,

	title={{HL7} {C}linical {D}ocument {A}rchitecture, release 2},

	author={Dolin, Robert H and Alschuler, Liora and Boyer, Sandy and Beebe, Calvin and Behlen, Fred M and Biron, Paul V and Shvo, Amnon Shabo},

	journal={Journal of the American Medical Informatics Association},

	volume={13},

	number={1},

	pages={30--39},

	year={2006},

	publisher={BMJ Publishing Group Ltd}

}

@article{sco12,

	title={Semantic mapping to simplify deployment of {HL7} v3 {C}linical {D}ocument {A}rchitecture},

	author={Scott, Philip and Worden, Robert},

	journal={Journal of Biomedical Informatics},

	volume={45},

	number={4},

	pages={697--702},

	year={2012},

	publisher={Elsevier}

}

@article{fran11,

	title={A partnership approach for electronic data capture in small-scale clinical trials},

	author={Franklin, Joshua D and Guidry, Alicia and Brinkley, James F},

	journal={Journal of Biomedical Informatics},

	volume={44},

	pages={S103--S108},

	year={2011},

	publisher={Elsevier}

}

@article{Abler2011,

	title = "Models for Forms",

	author = "Daniel Abler and Charles Crichton and Jim Davies and Steve Harris and James Welch",

	year = "2011",

	journal = "Proceedings of the 11th Workshop on Domain-Specific Modeling",

	month = "October",

}

@Book{MDA-proposal,

	author = "A. Kleppe and J. Warmer and W. Bast",

	title = {{MDA Explained, The Model Driven Architecture: Practice

	and Promise}},

	publisher = "Addison-Wesley",

	year =   "2003"

}

@book{MDAWarmer,

	author = {Warmer, Jos and Kleppe, Anneke},

	title = {The {O}bject {C}onstraint {L}anguage: Getting Your Models Ready for {MDA}},

	year = {2003},

	isbn = {0321179366},

	edition = {2},

	publisher = {Addison-Wesley Longman Publishing Co., Inc.},

	address = {Boston, MA, USA},

}

@electronic{MDHT,

	title = {Model Driven Health Tools},

	url="https://www.projects.openhealthtools.org/sf/projects/mdht"

}

@electronic{EUML,

	title = "Eclipse {MDT} {UML2} tools",

	url="https://eclipse.org/modeling/mdt?project=uml2"

}

@article{dav14,

	title = "Model-driven Engineering of Information Systems: 10 years and 1000 versions",

	author = "Jim Davies and Jeremy Gibbons and James Welch and Edward Crichton",

	year = "2014",

	journal = "Science of Computer Programming",

	month = "September",

	pages = "88-104",

	volume = "89B",

	doi = "10.1016/j.scico.2013.02.002",

}

@article{lero11,

	title={On selecting a clinical trial management system for large scale, multi-centre, multi-modal clinical research study},

	author={Leroux, Hugo and McBride, Simon and Gibson, Simon},

	journal={Studies in Health Technology and Informatics},

	volume={168},

	pages={89--95},

	year={2011}

}

@electronic{catalyst,

	author ={{University of Washington}},

	title ={Catalyst Web Tools},

	url={http://catalyst.washington.edu/web\_tools}

}

@electronic{oc,

	title ={Open{C}linica},

	url={http://www.openclinica.com}

}

@article{labk,

	title={Lab{K}ey {S}erver: An Open Source Platform for Scientific Data Integration, Analysis and Collaboration},

	author={Nelson, Elizabeth K and Piehler, Britt and Eckels, Josh and Rauch, Adam and Bellew, Matthew and Hussey, Peter and Ramsay, Sarah and Nathe, Cory and Lum, Karl and Krouse, Kevin and others},

	journal={BMC Bioinformatics},

	volume={12},

	number={1},

	pages={71},

	year={2011},

	publisher={BioMed Central Ltd}

}

@incollection{cais,

	title={The {CAISIS} research data system},

	author={Fearn, Paul and Sculli, Frank},

	booktitle={Biomedical Informatics for Cancer Research},

	pages={215--225},

	year={2010},

	publisher={Springer}

}

@inproceedings{kham08,

	title={Model-driven development of mobile personal health care applications},

	author={Khambati, Abizer and Grundy, John and Warren, James and Hosking, John},

	booktitle={Proceedings of the 2008 23rd IEEE/ACM International Conference on Automated Software Engineering},

	pages={467--470},

	year={2008},

	organization={IEEE Computer Society}

}

@inproceedings{schl15,

	title={Towards Model Driven Architecture in Health Care Information System Development},

	author={Schlieter, Hannes and Burwitz, Martin and Sch{\"o}nherr, Oliver and Benedict, Martin},

	booktitle={12th International Conference on Wirtschaftsinformatik (WI 2015)},

	month={March},

	year={2015},

}

@book{EMF,

	author = {Steinberg, David and Budinsky, Frank and Paternostro, Marcelo and Merks, Ed},

	title = {EMF: Eclipse Modeling Framework},

	year = {2009},

	isbn = {0321331885},

	edition = {2nd},

	publisher = {Addison-Wesley Professional},

}

@article{ragh08,

	title={Exploring a model-driven architecture ({MDA}) approach to health care information systems development},

	author={Raghupathi, Wullianallur and Umar, Amjad},

	journal={International Journal of Medical Informatics},

	volume={77},

	number={5},

	pages={305--314},

	year={2008},

	publisher={Elsevier}

}

@article{blob07,

	title={A model driven approach for the German health telematics architectural framework and security infrastructure},

	author={Blobel, Bernd and Pharow, Peter},

	journal={International Journal of Medical Informatics},

	volume={76},

	number={2},

	pages={169--175},

	year={2007},

	publisher={Elsevier}

}

@techreport{mass13,

	Author = {Massie, Matt and Nothaft, Frank and Hartl, Christopher and Kozanitis, Christos and Schumacher, AndrÃ© and Joseph, Anthony D. and Patterson, David A.},

	Title = {ADAM: Genomics Formats and Processing Patterns for Cloud Scale Computing},

	Institution = {EECS Department, University of California, Berkeley},

	Year = {2013},

	Month = {Dec},

	URL = {http://www.eecs.berkeley.edu/Pubs/TechRpts/2013/EECS-2013-207.html},

	Number = {UCB/EECS-2013-207}

}

@article{davi14,

	title={The {C}ancer{G}rid experience: Metadata-based Model-Driven Engineering for Clinical Trials},

	author={Davies, Jim and Gibbons, Jeremy and Harris, Steve and Crichton, Charles},

	journal={Science of Computer Programming},

	volume={89},

	pages={126--143},

	year={2014},

	publisher={Elsevier}

}

@incollection{davi12,

	title={Form Follows Function: Model-Driven Engineering for Clinical Trials},

	author={Davies, Jim and Gibbons, Jeremy and Calinescu, Radu and Crichton, Charles and Harris, Steve and Tsui, Andrew},

	booktitle={Foundations of Health Informatics Engineering and Systems},

	pages={21--38},

	year={2012},

	publisher={Springer}

}

@article{kunz09,

	title={Metadata mapping and reuse in ca{BIG}},

	author={Kunz, Isaac and Lin, Ming-Chin and Frey, Lewis},

	journal={BMC Bioinformatics},

	volume={10},

	number={Suppl 2},

	pages={S4},

	year={2009},

	publisher={BioMed Central Ltd}

}

@article{koma08,

	title={{caCORE} version 3: Implementation of a Model Driven, Service-Oriented Architecture for Semantic Interoperability},

	author={Komatsoulis, George A and Warzel, Denise B and Hartel, Francis W and Shanbhag, Krishnakant and Chilukuri, Ram and Fragoso, Gilberto and de Coronado, Sherri and Reeves, Dianne M and Hadfield, Jillaine B and Ludet, Christophe and others},

	journal={Journal of Biomedical Informatics},

	volume={41},

	number={1},

	pages={106--123},

	year={2008},

	publisher={Elsevier}

}

@inproceedings{lero12,

	title={A method for the semantic enrichment of clinical trial data},

	author={Leroux, Hugo and McBride, Simon and Lefort, Laurent and Kemp, Madonna and Gibson, Simon},

	booktitle={Health Informatics: Building a Healthcare Future Through Trusted Information; Selected Papers from the 20th Australian National Health Informatics Conference (HIC 2012)},

	volume={178},

	pages={111},

	year={2012},

	organization={IOS Press}

}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


text:
SECTION = "libs"
require libidl_${PV}.bb
inherit native

PR = "r1"

DEPENDS = "bison-native glib-2.0-native"

SRC_URI[md5sum] = "bb8e10a218fac793a52d404d14adedcb"
SRC_URI[sha256sum] = "c5d24d8c096546353fbc7cedf208392d5a02afe9d56ebcc1cccb258d7c4d2220"

license: MIT

license_type: permissive

branch_name: refs/heads/fido

gha_license_id: MIT

gha_language: BitBake

extension: bb


text:
require xextproto_7.0.5.bb
PR = "${INC_PR}.1"

EXTRA_OECONF += "--includedir=${includedir}/xextproto-70"

do_install_append() {
        rm -r ${D}${libdir}
}

# Build of xserver-kdrive is not possible with xextproto >= 7.1.
# This package allows to install old 7.0 includes in parallel.
BPN = "xextproto"

# No, we really do not want to install .pc file and overwrite newer one:
pkgconfig_sysroot_preprocess() {
}

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD