text:
% This file was created with JabRef 2.10.
% Encoding: Cp1252

@Article{Batalha2013,
  Title                    = {Planetary candidates observed by Kepler. III. Analysis of the first 16 months of data},
  Author                   = {Batalha, Natalie M and Rowe, Jason F and Bryson, Stephen T and Barclay, Thomas and Burke, Christopher J and Caldwell, Douglas A and Christiansen, Jessie L and Mullally, Fergal and Thompson, Susan E and Brown, Timothy M and others},
  Journal                  = {The Astrophysical Journal Supplement Series},
  Year                     = {2013},
  Number                   = {2},
  Pages                    = {24},
  Volume                   = {204},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Cahoy2010,
  Title                    = {Exoplanet albedo spectra and colors as a function of planet phase, separation, and metallicity},
  Author                   = {Cahoy, Kerri L and Marley, Mark S and Fortney, Jonathan J},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2010},
  Number                   = {1},
  Pages                    = {189},
  Volume                   = {724},
  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Cumming2008,
  Title                    = {The Keck planet search: detectability and the minimum mass and orbital period distribution of extrasolar planets},
  Author                   = {Cumming, Andrew and Butler, R Paul and Marcy, Geoffrey W and Vogt, Steven S and Wright, Jason T and Fischer, Debra A},
  Journal                  = {Publications of the Astronomical Society of the Pacific},
  Year                     = {2008},
  Number                   = {867},
  Pages                    = {531--554},
  Volume                   = {120},

  Owner                    = {Daniel},
  Publisher                = {JSTOR},
  Timestamp                = {2015.05.22}
}

@Article{Dressing2013,
  Title                    = {The occurrence rate of small planets around small stars},
  Author                   = {Dressing, Courtney D and Charbonneau, David},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2013},
  Number                   = {1},
  Pages                    = {95},
  Volume                   = {767},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Fortney2007,
  Title                    = {Planetary radii across five orders of magnitude in mass and stellar insolation: application to transits},
  Author                   = {Fortney, JJ and Marley, MS and Barnes, JW},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2007},
  Number                   = {2},
  Pages                    = {1661},
  Volume                   = {659},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Fortney2008,
  Title                    = {Synthetic spectra and colors of young giant planet atmospheres: effects of initial conditions and atmospheric metallicity},
  Author                   = {Fortney, Jonathan J and Marley, Mark S and Saumon, Didier and Lodders, Katharina},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2008},
  Number                   = {2},
  Pages                    = {1104},
  Volume                   = {683},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Fressin2013,
  Title                    = {The false positive rate of Kepler and the occurrence of planets},
  Author                   = {Fressin, Fran{\c{c}}ois and Torres, Guillermo and Charbonneau, David and Bryson, Stephen T and Christiansen, Jessie and Dressing, Courtney D and Jenkins, Jon M and Walkowicz, Lucianne M and Batalha, Natalie M},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2013},
  Number                   = {2},
  Pages                    = {81},
  Volume                   = {766},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Howard2010,
  Title                    = {The occurrence and mass distribution of close-in super-Earths, Neptunes, and Jupiters},
  Author                   = {Howard, Andrew W and Marcy, Geoffrey W and Johnson, John Asher and Fischer, Debra A and Wright, Jason T and Isaacson, Howard and Valenti, Jeff A and Anderson, Jay and Lin, Doug NC and Ida, Shigeru},
  Journal                  = {Science},
  Year                     = {2010},
  Number                   = {6004},
  Pages                    = {653--655},
  Volume                   = {330},

  Owner                    = {Daniel},
  Publisher                = {American Association for the Advancement of Science},
  Timestamp                = {2015.05.22}
}

@Article{Macintosh2014,
  Title                    = {First light of the gemini planet imager},
  Author                   = {Macintosh, Bruce and Graham, James R and Ingraham, Patrick and Konopacky, Quinn and Marois, Christian and Perrin, Marshall and Poyneer, Lisa and Bauman, Brian and Barman, Travis and Burrows, Adam S and others},
  Journal                  = {Proceedings of the National Academy of Sciences},
  Year                     = {2014},
  Number                   = {35},
  Pages                    = {12661--12666},
  Volume                   = {111},

  Owner                    = {Daniel},
  Publisher                = {National Acad Sciences},
  Timestamp                = {2015.05.22}
}

@Article{Marley1999,
  Title                    = {Reflected spectra and albedos of extrasolar giant planets. I. Clear and cloudy atmospheres},
  Author                   = {Marley, Mark S and Gelino, Christopher and Stephens, Denise and Lunine, Jonathan I and Freedman, Richard},
  Journal                  = {The Astrophysical Journal},
  Year                     = {1999},
  Number                   = {2},
  Pages                    = {879},
  Volume                   = {513},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{McBride2011,
  Title                    = {Experimental design for the gemini planet imager},
  Author                   = {McBride, James and Graham, James R and Macintosh, Bruce and Beckwith, Steven VW and Marois, Christian and Poyneer, Lisa A and Wiktorowicz, Sloane J},
  Journal                  = {Publications of the Astronomical Society of the Pacific},
  Year                     = {2011},
  Number                   = {904},
  Pages                    = {692--708},
  Volume                   = {123},

  Owner                    = {Daniel},
  Publisher                = {JSTOR},
  Timestamp                = {2015.05.22}
}

@Article{Nielsen2013,
  Title                    = {The Gemini NICI Planet-Finding Campaign: The frequency of giant planets around young B and A stars},
  Author                   = {Nielsen, Eric L and Liu, Michael C and Wahhaj, Zahed and Biller, Beth A and Hayward, Thomas L and Close, Laird M and Males, Jared R and Skemer, Andrew J and Chun, Mark and Ftaclas, Christ and others},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2013},
  Number                   = {1},
  Pages                    = {4},
  Volume                   = {776},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Petigura2013,
  Title                    = {A plateau in the planet population below twice the size of Earth},
  Author                   = {Petigura, Erik A and Marcy, Geoffrey W and Howard, Andrew W},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2013},
  Number                   = {1},
  Pages                    = {69},
  Volume                   = {770},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Pollack1986,
  Title                    = {Estimates of the bolometric albedos and radiation balance of Uranus and Neptune},
  Author                   = {Pollack, James B and Rages, Kathy and Baines, Kevin H and Bergstralh, Jay T and Wenkert, Daniel and Danielson, G Edward},
  Journal                  = {Icarus},
  Year                     = {1986},
  Number                   = {2},
  Pages                    = {442--466},
  Volume                   = {65},

  Owner                    = {Daniel},
  Publisher                = {Elsevier},
  Timestamp                = {2015.05.22}
}

@InProceedings{Savransky2013,
  Title                    = {Space mission design for exoplanet imaging},
  Author                   = {Savransky, Dmitry},
  Booktitle                = {SPIE Optical Engineering+ Applications},
  Year                     = {2013},
  Organization             = {International Society for Optics and Photonics},
  Pages                    = {886403--886403},

  Owner                    = {Daniel},
  Timestamp                = {2015.05.21}
}

@Article{Savransky2011,
  Title                    = {Parameter distributions of Keplerian orbits},
  Author                   = {Savransky, Dmitry and Cady, Eric and Kasdin, N Jeremy},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2011},
  Number                   = {1},
  Pages                    = {66},
  Volume                   = {728},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Savransky2010,
  Title                    = {Analyzing the designs of planet-finding missions},
  Author                   = {Savransky, Dmitry and Kasdin, N Jeremy and Cady, Eric},
  Journal                  = {Publications of the Astronomical Society of the Pacific},
  Year                     = {2010},
  Number                   = {890},
  Pages                    = {401--419},
  Volume                   = {122},

  Owner                    = {Daniel},
  Publisher                = {JSTOR},
  Timestamp                = {2015.05.21}
}

@Article{Spergel2013,
  Title                    = {Wide-field infrared survey telescope-astrophysics focused telescope assets wfirst-afta final report},
  Author                   = {Spergel, D and Gehrels, N and Breckinridge, J and Donahue, M and Dressler, A and Gaudi, BS and Greene, T and Guyon, O and Hirata, C and Kalirai, J and others},
  Journal                  = {arXiv preprint arXiv:1305.5422},
  Year                     = {2013},

  Owner                    = {Daniel},
  Timestamp                = {2015.05.21}
}

@Article{Spiegel2012,
  Title                    = {Spectral and photometric diagnostics of giant planet formation scenarios},
  Author                   = {Spiegel, David S and Burrows, Adam},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2012},
  Number                   = {2},
  Pages                    = {174},
  Volume                   = {745},

  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@Article{Stark2014,
  Title                    = {Maximizing the ExoEarth Candidate Yield from a Future Direct Imaging Mission},
  Author                   = {Stark, Christopher C and Roberge, Aki and Mandell, Avi and Robinson, Tyler D},
  Journal                  = {The Astrophysical Journal},
  Year                     = {2014},
  Number                   = {2},
  Pages                    = {122},
  Volume                   = {795},

  __markedentry            = {[Daniel:6]},
  Owner                    = {Daniel},
  Publisher                = {IOP Publishing},
  Timestamp                = {2015.05.22}
}

@article{cahoy2014wavefront,
	Author = {Cahoy, Kerri L and Marinan, Anne D and Novak, Benjamin and Kerr, Caitlin and Nguyen, Tam and Webber, Matthew and Falkenburg, Grant and Barg, Andrew},
	Journal = {Journal of Micro/Nanolithography, MEMS, and MOEMS},
	Number = {1},
	Pages = {011105--011105},
	Title = {Wavefront control in space with MEMS deformable mirrors for exoplanet direct imaging},
	Volume = {13},
	Year = {2014}}

@conference{shaklan2010error,
	Author = {S.~B. Shaklan and M.~C. Noecker and A.~S. Lo and T. Glassman and P.~J. Dumont and E.~O. Jordan and N.~J. Kasdin and W.~C. Cash, Jr. and E.~J. Cady and P.~R. Lawson},
	Booktitle = {Proceedings of SPIE},
	Title = {Error budgeting and tolerancing of starshades for exoplanet detection},
	Volume = {7731},
	Year = {2010}}

@article{fowler1990demonstration,
	Author = {Fowler, AM and Gatley, Ian},
	Journal = {The Astrophysical Journal},
	Pages = {L33},
	Title = {Demonstration of an algorithm for read-noise reduction in infrared arrays},
	Volume = {353},
	Year = {1990}}

@article{wenger2000simbad,
	Author = {Wenger, Marc and Ochsenbein, Fran{\c{c}}ois and Egret, Daniel and Dubois, Pascal and Bonnarel, Fran{\c{c}}ois and Borde, Suzanne and Genova, Fran{\c{c}}oise and Jasniewicz, G{\'e}rard and Lalo{\"e}, Suzanne and Lesteven, Soizick and others},
	Journal = {Astronomy and Astrophysics Supplement Series},
	Number = {1},
	Pages = {9--22},
	Title = {The SIMBAD astronomical database-The CDS reference database for astronomical objects},
	Volume = {143},
	Year = {2000}}

@article{perryman1997hipparcos,
	Author = {Perryman, Michael AC and Lindegren, L and Kovalevsky, J and Hoeg, E and Bastian, U and Bernacca, PL and Cr{\'e}z{\'e}, M and Donati, F and Grenon, M and Grewing, M and others},
	Journal = {Astronomy and Astrophysics},
	Pages = {L49--L52},
	Title = {The HIPPARCOS catalogue},
	Volume = {323},
	Year = {1997}}

@article{turnbull2012search,
	Author = {Turnbull, Margaret C and Glassman, Tiffany and Roberge, Aki and Cash, Webster and Noecker, Charley and Lo, Amy and Mason, Brian and Oakley, Phil and Bally, John},
	Journal = {Publications of the Astronomical Society of the Pacific},
	Number = {915},
	Pages = {418--447},
	Title = {{The Search for Habitable Worlds: 1. The Viability of a Starshade Mission}},
	Volume = {124},
	Year = {2012}}

@incollection{henry2004,
	Address = {San Francisco},
	Author = {T. J. Henry},
	Booktitle = {Spectroscopically and Spatially Resolving the Components of the Close Binary Stars, Proceedings of the Workshop held 20-24 October 2003 in Dubrovnik, Croatia},
	Editor = {R. W. Hilditch and H. Hensberge and K. Pavlovski},
	Publisher = {ASP Conference Series},
	Title = {The Mass-Luminosity Relation from end to end},
	Volume = {318},
	Year = {2004}}

@inproceedings{savransky2010occulting,
	Author = {Savransky, D. and Spergel, D.~N. and Kasdin, N.~J. and Cady, E.~J. and Lisman, P.~D. and Pravdo, S.~H. and Shaklan, S.~B. and Fujii, Y.},
	Booktitle = {Proc. SPIE},
	Pages = {77312H},
	Title = {Occulting ozone observatory science overview},
	Volume = {7731},
	Year = {2010}}

@article{brown2005,
	Author = {R. A. Brown},
	Journal = {The Astrophysical Journal},
	Pages = {1010-1024},
	Title = {Single-visit photometric and obscurational completeness},
	Volume = {624},
	Year = {2005}}

@article{brown2010new,
	Author = {Brown, R.A. and Soummer, R.},
	Journal = {The Astrophysical Journal},
	Pages = {122},
	Title = {New Completeness Methods for Estimating Exoplanet Discoveries by Direct Detection},
	Volume = {715},
	Year = {2010}}

@article{burrows1997nongray,
	Author = {{Burrows}, A. and {Marley}, M. and {Hubbard}, W.~B. and {Lunine}, J.~I. and {Guillot}, T. and {Saumon}, D. and {Freedman}, R. and {Sudarsky}, D. and {Sharp}, C.},
	Journal = {The Astrophysical Journal},
	Month = dec,
	Pages = {856-+},
	Title = {{A Nongray Theory of Extrasolar Giant Planets and Brown Dwarfs}},
	Volume = 491,
	Year = 1997}

@article{burrows2003beyond,
	Author = {Burrows, A. and Sudarsky, D. and Lunine, J.~I.},
	Journal = {The Astrophysical Journal},
	Pages = {587},
	Title = {Beyond the T dwarfs: Theoretical spectra, colors, and detectability of the coolest brown dwarfs},
	Volume = {596},
	Year = {2003}}

@article{lafreniere2007new,
	Author = {Lafreni\`{e}re, D. and Marois, C. and Doyon, R. and Nadeau, D. and Artigau, \'{E}.},
	Journal = {The Astrophysical journal},
	Number = {1},
	Pages = {770--780},
	Title = {A new algorithm for point-spread function subtraction in high-contrast imaging: A demonstration with angular differential imaging},
	Volume = {660},
	Year = {2007}}

@article{soummer2012detection,
	Author = {Soummer, R. and Pueyo, L. and Larkin, J.},
	Journal = {The Astrophysical Journal Letters},
	Number = {2},
	Pages = {L28},
	Title = {Detection and Characterization of Exoplanets and Disks using Projections on {Karhunen-Loeve} Eigenimages},
	Volume = {755},
	Year = {2012}}

@article{kasdin2006,
	Author = {N.~J. Kasdin and I. Braems},
	Journal = {The Astrophysical Journal},
	Pages = {1260-1274},
	Title = {Linear and Bayesian Planet Detection Algorithms for the Terrestrial Planet Finder},
	Volume = {646},
	Year = {2006}}

@inproceedings{savransky2008,
	Author = {D. Savransky and N. Jeremy Kasdin},
	Booktitle = {Proc. SPIE},
	Title = {Design reference mission construction for planet finders},
	Volume = {7010},
	Year = {2008}}

@article{perez2007ipython,
	Author = {Perez, Fernando and Granger, Brian E},
	Journal = {Computing in Science \& Engineering},
	Number = {3},
	Pages = {21--29},
	Title = {IPython: a system for interactive scientific computing},
	Volume = {9},
	Year = {2007}}

@inproceedings{trauger2012complex,
	Author = {Trauger, John and Moody, Dwight and Gordon, Brian and Krist, John and Mawet, Dimitri},
	Booktitle = {SPIE Astronomical Telescopes+ Instrumentation},
	Organization = {International Society for Optics and Photonics},
	Pages = {84424Q--84424Q},
	Title = {Complex apodization Lyot coronagraphy for the direct imaging of exoplanet systems: design, fabrication, and laboratory demonstration},
	Year = {2012}}

@inproceedings{zimmerman2015shaped,
	Author = {Zimmerman, Neil and Eldorado Riggs, AJ and Kasdin, N Jeremy and Carlotti, Alexis and Vanderbei, Robert J},
	Booktitle = {American Astronomical Society Meeting Abstracts},
	Title = {A Shaped Pupil Lyot Coronagraph for WFIRST-AFTA},
	Volume = {225},
	Year = {2015}}

@inproceedings{sidick2014simulated,
	Author = {Sidick, Erkin and Kern, Brian and Belikov, Ruslan and Kuhnert, Andreas and Shaklan, Stuart},
	Booktitle = {SPIE Astronomical Telescopes+ Instrumentation},
	Organization = {International Society for Optics and Photonics},
	Pages = {91430W--91430W},
	Title = {Simulated contrast performance of phase induced amplitude apodization (PIAA) coronagraph testbed},
	Year = {2014}}

@inproceedings{traub2014science,
	Author = {Traub, Wesley A and Belikov, Ruslan and Guyon, Olivier and Kasdin, N Jeremy and Krist, John and Macintosh, Bruce and Mennesson, Bertrand and Savransky, Dmitry and Shao, Michael and Serabyn, Eugene and Trauger, John},
	Booktitle = {Proc. SPIE},
	Organization = {International Society for Optics and Photonics},
	Pages = {91430N--91430N},
	Series = {SPIE Astronomical Telescopes+ Instrumentation},
	Title = {Science yield estimation for AFTA coronagraphs},
	Year = {2014}}

@article{fressin2013false,
	Author = {Fressin, Fran{\c{c}}ois and Torres, Guillermo and Charbonneau, David and Bryson, Stephen T and Christiansen, Jessie and Dressing, Courtney D and Jenkins, Jon M and Walkowicz, Lucianne M and Batalha, Natalie M},
	Journal = {The Astrophysical Journal},
	Number = {2},
	Pages = {81},
	Title = {The false positive rate of Kepler and the occurrence of planets},
	Volume = {766},
	Year = {2013}}

repository: ChrisDelaX/EXOSIMS

repo_name: ChrisDelaX/EXOSIMS


text:
% DO NOT DELETE This File!!!

% encoding: UTF-8

@article{夏旭2006基于,
  title={基于 Google 学术搜索的引文检索研究},
  author={夏旭},
  journal={情报理论与实践},
  volume={29},
  number={6},
  pages={697--701},
  year={2006}
}

@article{孙吉贵2008聚类算法研究,
  title={聚类算法研究},
  author={孙吉贵 and 刘杰 and 赵连宇 and others},
  journal={软件学报},
  volume={19},
  number={1},
  pages={48--61},
  year={2008}
}

@inproceedings{mikolov2013distributed,
  title={Distributed representations of words and phrases and their compositionality},
  author={Mikolov, Tomas and Sutskever, Ilya and Chen, Kai and Corrado, Greg S and Dean, Jeff},
  booktitle={Advances in neural information processing systems},
  pages={3111--3119},
  year={2013}
}

@article{mikolov2013efficient,
  title={Efficient estimation of word representations in vector space},
  author={Mikolov, Tomas and Chen, Kai and Corrado, Greg and Dean, Jeffrey},
  journal={arXiv preprint arXiv:1301.3781},
  year={2013}
}

license: MIT

license_type: permissive

branch_name: refs/heads/master

extension: bib


text:
SUMMARY = "Phosphor OpenBMC machine readable workbook"
DESCRIPTION = "Pulls down system specific data"
PR = "r1"

S = "${WORKDIR}/git"

inherit obmc-phosphor-license
inherit obmc-xmlpatch
inherit native

PHOSPHOR_MRW_URI ?= "http://missing-mrw-uri"
SRC_URI += "${PHOSPHOR_MRW_URI}"
SRCREV = "${PHOSPHOR_MRW_REV}"

do_install() {
    install -d ${D}${datadir}/obmc-mrw
    install -m 0644 ${MACHINE}.xml ${D}${datadir}/obmc-mrw
}

extension: bb


text:
SUMMARY = "Pixhawk stock cube firmware binary"

LICENSE = "GPLv3"
LIC_FILES_CHKSUM = "file://${THISDIR}/files/COPYING.txt;md5=d32239bcb673463ab874e80d47fae504"

firmwaredir = "/firmware/3dr"
FILES_${PN} += "${firmwaredir}/"

REPO_NAME = "ardupilot-solo"
REPO_TAG = "solo-${PV}"
FILE_EXT = "px4"
FILE_SRC = "ArduCopter-v2.${FILE_EXT}"
FILE_DST = "ArduCopter-StockCube-${PV}.${FILE_EXT}"

do_fetch () {

    wget https://github.com/OpenSolo/ardupilot-solo/releases/download/solo-1.5.4/ArduCopter-v2.px4 -O ${WORKDIR}/${FILE_SRC}

}

do_install () {
    install -d ${D}${firmwaredir}
    install -m 0644 ${WORKDIR}/${FILE_SRC} ${D}${firmwaredir}/${FILE_DST}
}


text:
%%====================================================================%%
%%                AKADEMIA GÓRNICZO-HUTNICZA W KRAKOWIE
%%                    WYDZIAŁ MATEMATYKI STOSOWANEJ
%%                  PRACA MAGISTERSKA - BIBLIOGRAFIA
%%
%%       Autor : ----
%% Specjalność : ----
%%   Nr albumu : ----
%%    Promotor : ----
%%  Data (wer) : DD.MM.YYYY ...
%%
%%--------------------------------------------------------------------%%
%%
%%
%% -----------------------------
%%   BIBLIOGRAFIA dla BiBTeX-a
%% -----------------------------
%%
%
% Szablon z rekordami BibTeXa do wykorzystania we własnej bazie bibliografii.
% Przygotowanie: Daniel Delimata, Rafał Czarny na podstawie:
%   - Oren Patashnik, BIBTEXing, February 8, 1988
%     [@] http://www.ctan.org/get/biblio/bibtex/contrib/doc/btxdoc.pdf
%   - [@] http://pl.wikipedia.org/wiki/BibTeX
%   - [@] http://en.wikipedia.org/wiki/BibTeX
%
%%
%%
%% -------------
%%   PRZYKŁADY
%% -------------
%%
%
@STRING{wnt="Wydawnictwa Naukowo-Techniczne"}
@STRING{agh="Uczelniane Wydawnictwa Naukowo-Dydaktyczne AGH"}
@STRING{kr="Kraków"}
%
@ARTICLE{vvam,
  AUTHOR =       "Vsevolod Vladimirov and Adam Mahdi al Dhayeh",
  TITLE =        "Normal forms application for studying solitary wave solutions of non-integrable evolution systems",
  JOURNAL =      "Communications in Nonlinear Science and Numerical Simulation",
  YEAR =         "2004",
  volume =       "9",
  pages =        "615–631",
  month =        "December",
  note =         "Issue 6"
}
%
@BOOK{bozek,
  AUTHOR =    "Bogusław Bożek",
  TITLE =     "Metody obliczeniowe i ich komputerowa realizacja",
  PUBLISHER = agh,
  YEAR =      "2005",
  address =   kr,
  edition =   "1"
	isbn =      "83-89388-44-8"
}
%
@BOOK{jank,
  AUTHOR =    "Maksymilian Dryja and Janina Jankowska and Michał Jankowski",
  TITLE =     "Przegląd metod i algorytmów numerycznych",
  PUBLISHER = wnt,
  YEAR =      "1982",
  address =   "Warszawa"
}
%
%%
%%
%% -----------
%%   SZABLON
%% -----------
%%
%
% Użycie składni @STRING pozwala zastąpić często używane wyrażenia (nazwę miasta, wydawnictwa itp.)
%
% @STRING{my="<...>"}
%
% W poniższych szablonach DUŻE litery oznaczają pola wymagane, zaś małe litery są dla pól opcjonalnych,
% zamiast par cudzysłowów " ", wartości pól mogą być zamknięte w nawiasy { }.
%
%%
%% ------- SZABLONY REKORDÓW ------- %%
%%
%
% Artykuł, praca publikowana w czasopiśmie
@ARTICLE{#,
  AUTHOR =       "#",
  TITLE =        "#",
  JOURNAL =      "#",
  YEAR =         "#",
  volume =       "#",
  number =       "#",
  pages =        "#",
  month =        "#",
  note =         "#",
	key =          "#"
}
%
% Książka (zwarte wydawnictwo) z określonym wydawcą
% - pole 'author' może być zastąpione przez 'editor'
@BOOK{#,
  AUTHOR =       "#",
  TITLE =        "#",
  PUBLISHER =    "#",
  YEAR =         "#",
  editor =       "#",
  volume =       "#",
  number =       "#",
  series =       "#",
  address =      "#",
  edition =      "#",
  month =        "#",
  note =         "#",
	pages =        "#",
  isbn =         "#",
	key =          "#"
}
%
% Artykuł lub praca z materiałów konferencyjnych
% - można użyć zamiennie rekordu:  @CONFERENCE
@INPROCEEDINGS{#,
  AUTHOR =       "#",
  TITLE =        "#",
  BOOKTITLE =    "#",
  YEAR =         "#",
  editor =       "#",
  volume =       "#",
  number =       "#",
  series =       "#",
  pages =        "#",
  address =      "#",
  month =        "#",
  organization = "#",
  publisher =    "#",
  note =         "#",
	key =          "#"
}
%
% Praca oprawiona i drukowana, nie zawierająca informacji o wydawcy
@BOOKLET{#,
  TITLE =        "#",
  author =       "#",
  howpublished = "#",
  address =      "#",
  month =        "#",
  year =         "#",
  note =         "#",
	key =          "#"
}
%
% Fragmenty książki (rozdziały, wybrane części lub strony)
% - pole 'author' może być zastąpione przez 'editor',
% - 'chapter' można zastąpić przez 'pages'
@INBOOK{#,
  AUTHOR =       "#",
  TITLE =        "#",
  CHAPTER =      "#",
  pages =        "#",
  PUBLISHER =    "#",
  YEAR =         "#",
  editor =       "#",
  volume =       "#",
  number =       "#",
  series =       "#",
  type =         "#",
  address =      "#",
  edition =      "#",
  month =        "#",
  note =         "#",
	key =          "#"
}
%
% Rozdział książki lub część opatrzona własnym tytułem (np. różne rozdziały od różnych autorów)
@INCOLLECTION{#,
  AUTHOR =       "#",
  TITLE =        "#",
  BOOKTITLE =    "#",
  PUBLISHER =    "#",
  YEAR =         "#",
  editor =       "#",
  volume =       "#",
  number =       "#",
  series =       "#",
  type =         "#",
  chapter =      "#",
  pages =        "#",
  address =      "#",
  edition =      "#",
  month =        "#",
  note =         "#",
	key =          "#"
}
%
% Dokumentacja techniczna
@MANUAL{#,
  TITLE =        "#",
	author =       "#",
	organization = "#",
  address =      "#",
  edition =      "#",
  month =        "#",
	year =         "#",
  note =         "#",
  key =          "#"
}
%
% Praca magisterska
@MASTERTHESIS{#,
  AUTHOR =       "#",
  TITLE =        "#",
  SCHOOL =       "#",
  YEAR =         "#",
  type =         "#",
  address =      "#",
  month =        "#",
  note =         "#",
  key =          "#"
}
%
% Praca doktorska
@PHDTHESIS{#,
  AUTHOR =       "#",
  TITLE =        "#",
  SCHOOL =       "#",
  YEAR =         "#",
  type =         "#",
  address =      "#",
  month =        "#",
  note =         "#",
  key =          "#"
}
%
% Raport uczelni lub innej instytucji, zwykle wchodzący w skład numerowanej serii.
@TECHREPORT{#,
  AUTHOR =       "#",
  TITLE =        "#",
  INSTITUTION =  "#",
  YEAR =         "#",
  type =         "#",
  number =       "#",
  address =      "#",
  month =        "#",
  note =         "#",
  key =          "#"
}
%
% Materiały konferencyjne jako całość, w odróżnieniu od pojedynczych prac
@PROCEEDINGS{#,
  TITLE =        "#",
  YEAR =         "#",
  editor =       "#",
  volume =       "#",
  number =       "#",
  series =       "#",
  address =      "#",
  month =        "#",
	organization = "#",
	publisher =    "#",
  note =         "#",
  isbn =         "#",
	key =          "#"
}
%
% Dokument z autorem i tytułem, ale formalnie nie wydane
% - pod tym rekordem można umieścić np. materiały z Internetu
@UNPUBLISHED{#,
  AUTHOR =       "#",
  TITLE =        "#",
  NOTE =         "#",
  month =        "#",
  year =         "#",
	key =          "#"
}
%
% Publikacje nie mieszczące się w obrębie innych kategorii
% - również nadaje się dla materiałów internetowych itp.
@MISC{#,
  author =       "#",
  title =        "#",
  howpublished = "#",
  month =        "#",
  year =         "#",
  note =         "#",
	annote = 	     "#",
	key =          "#"
}
%%
%% [Wersja dla: 2011/09/06 v1.06]
%%====================================================================%%

repository: RafalCzarny/MgrWMS

repo_name: RafalCzarny/MgrWMS


text:
@inproceedings{lesieur_statistical_2017,
 abstract = {We consider tensor factorizations using a generative model and a Bayesian approach. We compute rigorously the mutual information, the Minimal Mean Square Error (MMSE), and unveil information-theoretic phase transitions. In addition, we study the performance of Approximate Message Passing (AMP) and show that it achieves the MMSE for a large set of parameters, and that factorization is algorithmically “easy” in a much wider region than previously believed. It exists, however, a “hard” region where AMP fails to reach the MMSE and we conjecture that no polynomial algorithm will improve on AMP.},
 author = {Lesieur, T. and Miolane, L. and Lelarge, M. and Krzakala, F. and Zdeborová, L.},
 booktitle = {2017 IEEE International Symposium on Information Theory (ISIT)},
 doi = {10.1109/ISIT.2017.8006580},
 file = {IEEE Xplore Abstract Record:/Users/florentkrzakala/Zotero/storage/QSWTRWV7/8006580.html:text/html;Submitted Version:/Users/florentkrzakala/Zotero/storage/4ALE29UX/Lesieur et al. - 2017 - Statistical and computational phase transitions in.pdf:application/pdf},
 keywords = {AMP, approximate message passing, Approximation algorithms, Bayes methods, Bayesian approach, Channel estimation, Computational modeling, computational phase transitions, Estimation, hard region, information theory, information-theoretic phase transitions, matrix decomposition, mean square error methods, message passing, minimal mean square error, MMSE, Mutual information, spiked tensor estimation, Tensile stress, tensor factorizations, tensors},
 month = {June},
 pages = {511--515},
 title = {Statistical and computational phase transitions in spiked tensor estimation},
 year = {2017}
}

repository: krzakala/academic-kickstart

repo_name: krzakala/academic-kickstart


text:
@article{edwards1998aam,
  title={Face Recognition Using Active Appearance Models},
  author={G.J. Edwards, T.F. Cootes and C.J. Taylor},
  journal={},
  volume={},
  number={},
  pages={},
  year={1998},
  publisher={}
}

@article{xue2001features,
  title={Facial Feature Extraction and Image Warping Using PCA Based Statistic Model},
  author={Z. Xue, S.Z. Li and E.K. Teoh},
  journal={},
  volume={},
  number={},
  pages={},
  year={2001},
  publisher={}
}

@article{klare2010taxonomy,
  title={On a Taxonomy of Facial Features},
  author={B. Klare and A.K. Jain},
  journal={},
  volume={},
  number={},
  pages={},
  year={2010},
  publisher={}
}

@article{gao2009normalization,
  title={Pose Normalization for Local Appearance-Based Face Recognition},
  author={H. Gao, H.K. Ekenel and R. Stiefelhagen},
  journal={},
  volume={},
  number={},
  pages={},
  year={2009},
  publisher={}
}

repository: ImaraSpeek/PhotoVision

repo_name: ImaraSpeek/PhotoVision


text:
DESCRIPTION = "ConfigObj is a simple but powerful config file reader and writer"
LICENSE = "BSD"

SRC_URI = "http://pypi.python.org/packages/source/C/ConfigObj/configobj-${PV}.tar.gz"

inherit distutils

S = "${WORKDIR}/configobj-${PV}"

SRC_URI[md5sum] = "6e2b37301439705831bd510d2a198431"
SRC_URI[sha256sum] = "4276fcc96d81f0ba923f3a8c44c3cb55ac72c00fa79d35f1e3ccb4d410b3d7c5"

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD


text:
%%% -*-BibTeX-*-
@inproceedings{CVPR2020Zhuang5,
    title      =  {Training Quantized Neural Networks with a Full-precision Auxiliary Module},
    author      = {Bohan Zhuang and Lingqiao Liu and Mingkui Tan and
                   Chunhua Shen  and  Ian Reid},
    year        = {2020},
    pages       = {},
    volume      = {},
    publisher   = {},
    eprint      = {1903.11236},
    booktitle   = {IEEE Conference on Computer Vision and Pattern Recognition (CVPR'20)},
    address     = {},
    venue       = {CVPR},
    url         = {},
    project     = {},
    note      = {Oral presentation},
}


text:
DESCRIPTION = "Example Hello World"
SECTION = "ntb"
DEPENDS = "ncurses"
RDEPENDS_${PN} = "ncurses"
#RDEPENDS_${PN}-dev = "ncurses-dev"

LICENSE = "APACHE2"
LIC_FILES_CHKSUM = "file://LICENSE;md5=7802ae218faa7577460854b57028fbba"

FILESEXTRAPATHS_prepend := "${THISDIR}/${PN}-${PV}:"

SRCREV = "v1.2.0"
SRC_URI = "git://github.com/eeros-project/eeros-framework.git;protocol=https"

# SRCREV = "${AUTOREV}"

# SRC_URI = "git://github.com/eeros-project/eeros-framework.git \
#            file://0001-fix-libucl-paths.patch \
#            file://0001-fix-libucl-install-error.patch \
#            "

S = "${WORKDIR}/git"

FILES_${PN} += "/usr/lib/EEROS/cmake/EEROSConfig.cmake \
                /usr/lib/EEROS/cmake/EEROSConfigVersion.cmake"

inherit cmake
OECMAKE_FIND_ROOT_PATH_MODE_PROGRAM = "BOTH"

#EXTRA_OACMAKE = "-DCMAKE_INSTALL_PREFIX=/usr/lib -DCMAKE_BUILD_TYPE=Release"

python () {
  if d.getVar('ETHERCAT') == '1':
    d.appendVar('EXTRA_OECMAKE', ' -DUSE_ETHERCAT=TRUE')
    d.appendVar('DEPENDS', ' ecmasterlib')
    d.appendVar('RDEPENDS_libeeros', ' ecmasterlib')
}

repository: zechenturm/meta-ntb

repo_name: zechenturm/meta-ntb


text:
@InProceedings{LopezRubio2007b,
  author = {E. L{\a'o}pez-Rubio and J.M. Ortiz-De-Lazcano-Lobato and D. L{\a'o}pez-Rodr{\a'\i}guez and M. {Del Carmen Vargas-Gonz{\a'a}lez}},
  booktitle = {Computational and Ambient Intelligence, 9th International Work-Conference on Artificial Neural Networks, {IWANN} 2007, San Sebasti{\'{a}}n, Spain, June 20-22, 2007, Proceedings},
  title = {Automatic Model Selection for Probabilistic {PCA}},
  year = {2007},
  address = {San Sebastian},
  editor = {Francisco Sandoval Hern{\a'a}ndez and Alberto Prieto and Joan Cabestany and Manuel Gra{\~n}a},
  note = {cited By 0; Conference of 9th International Work-Conference on Artificial Neural Networks, IWANN 2007 ; Conference Date: 20 June 2007 Through 22 June 2007; Conference Code:71094},
  pages = {127-134},
  publisher = {Springer Verlag},
  series = {Lecture Notes in Computer Science},
  volume = {4507 LNCS},
  abstract = {The Mixture of Probabilistic Principal Components Analyzers (MPPCA) is a multivariate analysis technique which defines a Gaussian probabilistic model at each unit. The number of units and principal directions in each unit is not learned in the original approach. Variational Bayesian approaches have been proposed for this purpose, which rely on assumptions on the input distribution and/or approximations of certain statistics. Here we present a different way to solve this problem, where cross-validation is used to guide the search for an optimal model selection. This allows to learn the model architecture without the need of any assumptions other than those of the basic PPCA framework. Experimental results are presented, which show the probability density estimation capabilities of the proposal with high dimensional data. © Springer-Verlag Berlin Heidelberg 2007.},
  author_keywords = {Cross-validation; Dimensionality reduction; Handwritten digit recognition; Probabilistic Principal Components Analysis (PPCA)},
  bibsource = {dblp computer science bibliography, https://dblp.org},
  biburl = {https://dblp.org/rec/conf/iwann/Lopez-RubioOLV07.bib},
  document_type = {Conference Paper},
  doi = {10.1007/978-3-540-73007-1_16},
  journal = {Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)},
  keywords = {Approximation theory; Bayesian networks; Gaussian distribution; Mathematical models; Probability density function, Multivariate analysis; Optimal model selection, Principal component analysis},
  source = {Scopus},
  url = {https://doi.org/10.1007/978-3-540-73007-1_16},
}

gha_license_id: MIT

gha_language: HTML


text:
SUMMARY = "OpenCL Integration for Python"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://LICENSE;md5=2379446cdcffbf1c63a87311b816a656"

DEPENDS = " python-cffi-native python-numpy-native opencl"
RDEPENDS_${PN} = " opencl-runtime \
                   python-numpy \
                   python-pytest \
                   python-pytools \
                   python-decorator \
                   python-cffi \
                   python-appdirs \
                   python-six \
                   python-mako \
"

SRC_URI[md5sum] = "0c8a33b6a6b427bcd9c5966da461d9c6"
SRC_URI[sha256sum] = "54b6e8ad02dc437807739bd53e43851efe979bd51ec87996e44b94ab67238297"

inherit pypi setuptools

# Standard pypi SRC_URI is not available at this time
SRC_URI = "https://pypi.python.org/packages/cb/4e/fcb45db7d3005f5646f28a3de2a2f8e60a6e4b629f02bbb331320778f3a1/pyopencl-2016.1.tar.gz"


text:
@article{tao15cvpr,
  title={Depth from Shading, Defocus, and Correspondence Using Light-Field Angular Coherence},
  author={Michael W. Tao and Pratul P. Srinivasan and Jitendra Malik and Szymon Rusinkiewicz and Ravi Ramamoorthi},
  journal={Conference on Computer Vision and Pattern Recognition (CVPR)},
  year={2015},
}

@article{tao15pami,
  title={Shape Estimation from Shading, Defocus, and Correspondence Using Light-Field Angular
Coherence},
  author={Michael W. Tao and Pratul P. Srinivasan and Sunil Hadap and Szymon Rusinkiewicz and Jitendra Malik and Ravi Ramamoorthi},
  journal={IEEE Transactions on Pattern Matching and Machine Intelligence},
  year={2015},
}

repository: pratulsrinivasan/academic-kickstart

repo_name: pratulsrinivasan/academic-kickstart


text:
.flex {
  display: flex;
  flex-direction: row;
}
.copyright {
  text-align: center;
  margin: 1em;
  padding: 1em;
  margin-bottom: 40px;
  font-size: 12px;
}

repository: formigio/base

repo_name: formigio/base

extension: css


text:
DESCRIPTION = "Meta-package of extra applications for the GPE Palmtop Environment"
MAINTAINER = "Phil Blundell <pb@handhelds.org>"
LICENSE = MIT
PR="r2"

ALLOW_EMPTY = 1
BUILD_ALL_DEPS = "1"

DEPENDS = "task-gpe"

RDEPENDS = "\
    gpe-task-apps-extra \
    gpe-task-games \
    gpe-task-web \
    gpe-task-desktopapps"

repository: BackupTheBerlios/openslug-svn

repo_name: BackupTheBerlios/openslug-svn


text:
@INPROCEEDINGS{Steinbruckner2010,
  author = {Frank Steinbr\"uckner and Claus Lewerentz},
  title = {Representing development history in software cities},
  pages = {193--202},
  abstract = {In this paper we describe a systematic approach to utilize the city metaphor for the visualization of large software systems as evolving software cities. The main contribution is a new layout approach which explicitly takes the development history of software systems into account and makes history directly visible in the layouts. These layouts incrementally evolve in a very smooth and stable way during the development of the represented software system. They are used as a visualization platform for integrating a large variety of product and process data and thus create a coherent set of specialized visualizations. To illustrate this we present some example maps capturing specific development history aspects.},
  doi = {10.1145/1879211.1879239},
  year = {2010},
  booktitle = {SoftVis'10: Proceedings of the Symposium on Software Visualization},
  editor = {Alexandru Telea and Carsten G\"org and Steven P. Reiss},
  publisher = {ACM Press},
  isbn = {9781450300285}
}

repository: vis-au/treevisnet

repo_name: vis-au/treevisnet

gha_language: TeX


text:
@article{koepsellMicroscopicEvolutionDoped2020,
  title = {Microscopic Evolution of Doped {{Mott}} Insulators from Polaronic Metal to {{Fermi}} Liquid},
  author = {Koepsell, Joannis and Bourgund, Dominik and Sompet, Pimonpan and Hirthe, Sarah and Bohrdt, Annabelle and Wang, Yao and Grusdt, Fabian and Demler, Eugene and Salomon, Guillaume and Gross, Christian and Bloch, Immanuel},
  year = {2020},
  month = sep,
  abstract = {The competition between antiferromagnetism and hole motion in two-dimensional Mott insulators lies at the heart of a doping-dependent transition from an anomalous metal to a conventional Fermi liquid. Condensed matter experiments suggest charge carriers change their nature within this crossover, but a complete understanding remains elusive. We observe such a crossover in Fermi-Hubbard systems on a cold-atom quantum simulator and reveal the transformation of multi-point correlations between spins and holes upon increasing doping at temperatures around the superexchange energy. Conventional observables, such as spin susceptibility, are furthermore computed from the microscopic snapshots of the system. Starting from a magnetic polaron regime, we find the system evolves into a Fermi liquid featuring incommensurate magnetic fluctuations and fundamentally altered correlations. The crossover is completed for hole dopings around \$30\textbackslash\%\$. Our work benchmarks theoretical approaches and discusses possible connections to lower temperature phenomena.},
  archiveprefix = {arXiv},
  eprint = {2009.04440},
  eprinttype = {arxiv},
  file = {/Users/jim/Zotero/storage/XN53NBL3/Koepsell et al. - 2020 - Microscopic evolution of doped Mott insulators fro.pdf},
  journal = {arXiv:2009.04440 [cond-mat, physics:quant-ph]},
  keywords = {Condensed Matter - Quantum Gases,Condensed Matter - Strongly Correlated Electrons,Quantum Physics},
  language = {en},
  primaryclass = {cond-mat, physics:quant-ph}
}

@article{shersonSingleatomresolvedFluorescenceImaging2010,
  title = {Single-Atom-Resolved Fluorescence Imaging of an Atomic {{Mott}} Insulator},
  author = {Sherson, Jacob F. and Weitenberg, Christof and Endres, Manuel and Cheneau, Marc and Bloch, Immanuel and Kuhr, Stefan},
  year = {2010},
  month = sep,
  volume = {467},
  pages = {68--72},
  issn = {0028-0836, 1476-4687},
  doi = {10.1038/nature09378},
  file = {/Users/jim/Zotero/storage/KDHV7XNF/Sherson et al. - 2010 - Single-atom-resolved fluorescence imaging of an at.pdf},
  journal = {Nature},
  language = {en},
  number = {7311}
}

@article{weitenbergSinglespinAddressingAtomic2011,
  title = {Single-Spin Addressing in an Atomic {{Mott}} Insulator},
  author = {Weitenberg, Christof and Endres, Manuel and Sherson, Jacob F. and Cheneau, Marc and Schau{\ss}, Peter and Fukuhara, Takeshi and Bloch, Immanuel and Kuhr, Stefan},
  year = {2011},
  month = mar,
  volume = {471},
  pages = {319--324},
  issn = {0028-0836, 1476-4687},
  doi = {10.1038/nature09827},
  file = {/Users/jim/Zotero/storage/BIWQ42WJ/Weitenberg et al. - 2011 - Single-spin addressing in an atomic Mott insulator.pdf},
  journal = {Nature},
  language = {en},
  number = {7338}
}

repository: JWKennington/colloquia

repo_name: JWKennington/colloquia


text:
require xorg-proto-common.inc
PE = "1"

BBCLASSEXTEND = "native sdk"

SRC_URI[archive.md5sum] = "563cc41eeb590cf5eb2127807b838dfc"
SRC_URI[archive.sha256sum] = "913ff534aa777e3c36f3e9fe3e8638c3ccfe398daeb7532fa917e7bcd6fed07d"


text:
require ti-dmai.inc
require ti-paths.inc

inherit module-base

#This is a kernel module, don't set PR directly
MACHINE_KERNEL_PR_append = "c"

# compile time dependencies
DEPENDS = "alsa-lib ti-framework-components ti-codec-engine ti-xdctools-native"

DEPENDS_append_omap3    = " ti-dspbios-native ti-cgt6x-native ti-codecs-omap3530 virtual/kernel ti-linuxutils"
DEPENDS_append_dm6446 	= " ti-dspbios-native ti-cgt6x-native ti-codecs-dm6446 virtual/kernel ti-linuxutils"
DEPENDS_append_dm355  	= " ti-codecs-dm355 virtual/kernel"
DEPENDS_append_dm365    = " ti-codecs-dm365 virtual/kernel"
DEPENDS_append_omapl137 = " ti-dspbios-native ti-cgt6x-native ti-codecs-omapl137 virtual/kernel ti-linuxutils"
DEPENDS_append_omapl138 = " ti-dspbios-native ti-cgt6x-native ti-codecs-omapl138 virtual/kernel ti-linuxutils"

# Define DMAI build time variables
TARGET_omap3     = "o3530_al"
TARGET_dm6446    = "dm6446_al"
TARGET_omapl137 = "ol137_al"
TARGET_omapl138 = "ol138_al"
TARGET_dm355     = "dm355_al"
TARGET_dm365     = "dm365_al"
TARGET          ?= "all"

CGT6x_DIR = "${STAGING_DIR_NATIVE}/ti-cgt6x-native"
XDCTOOLS_DIR = "${STAGING_DIR_NATIVE}/ti-xdctools-native"
USER_XDC_PATH = "${CE_INSTALL_DIR}/examples"

PARALLEL_MAKE = ""

do_configure () {

	# PSP kernel is based on older DSS. we need to replace linux/omapfb.h with
	# mach/omapfb.h

    if ![ -e ${STAGING_KERNEL_DIR}/include/linux/omapfb.h ] ; then
        sed -i -e s:linux/omapfb:mach/omapfb:g ${S}/dmai/packages/ti/sdo/dmai/linux/Display_fbdev.c
        sed -i -e s:linux/omapfb:mach/omapfb:g ${S}/dmai/packages/ti/sdo/dmai/linux/priv/_Display.h
    fi
}

do_compile () {

	unset DMAI_INSTALL_DIR
	cd ${S}
	make XDC_INSTALL_DIR="${XDCTOOLS_DIR}" PLATFORM="${TARGET}" clean

	#  TODO: Figure out how to pass the alsa require location, currently
    #  LINUXLIBS_INSTALL_DIR is hard-coded for armv5te
	make CE_INSTALL_DIR="${CE_INSTALL_DIR}" \
		CODEC_INSTALL_DIR="${CODEC}" \
		FC_INSTALL_DIR="${FC_INSTALL_DIR}" \
		LINUXKERNEL_INSTALL_DIR="${STAGING_KERNEL_DIR}" \
		XDC_INSTALL_DIR="${XDCTOOLS_DIR}" \
		CODEGEN_INSTALL_DIR="${CGT6x_DIR}" \
		BIOS_INSTALL_DIR="${BIOS_INSTALL_DIR}"\
		LINUXLIBS_INSTALL_DIR="${STAGING_DIR_HOST}/usr" \
		USER_XDC_PATH="${USER_XDC_PATH}" \
		CROSS_COMPILE="${CROSS_DIR}/bin/${TARGET_PREFIX}" \
		VERBOSE="true" \
		XDAIS_INSTALL_DIR="${XDAIS_INSTALL_DIR}" \
		LINK_INSTALL_DIR="${LINK_INSTALL_DIR}" \
		CMEM_INSTALL_DIR="${CMEM_INSTALL_DIR}" \
		LPM_INSTALL_DIR="${CE_INSTALL_DIR}/cetools" \
		PLATFORM="${TARGET}"
}

do_install () {
	unset DMAI_INSTALL_DIR
	# install dmai apps on target
    cd ${S}/dmai
    make PLATFORM="${TARGET}" EXEC_DIR=${D}/${installdir}/dmai-apps install
	install -m 0755 ${WORKDIR}/loadmodules-ti-dmai-${TARGET}.sh ${D}/${installdir}/dmai-apps/loadmodule.sh

    cd ${S}/tests
    make PLATFORM="${TARGET}" EXEC_DIR=${D}/${installdir}/dmai-tests install
	install -m 0755 ${WORKDIR}/loadmodules-ti-dmai-${TARGET}.sh ${D}/${installdir}/dmai-tests/loadmodule.sh
}

pkg_postinst_ti-dmai-apps () {
	ln -sf ${installdir}/codec-combo/* ${installdir}/dmai-apps/
}

do_stage () {
	install -d ${DMAI_INSTALL_DIR}
	cp -pPrf ${S}/dmai/* ${DMAI_INSTALL_DIR}
}

# Disable QA check untils we figure out how to pass LDFLAGS in build
INSANE_SKIP_${PN} = True
INSANE_SKIP_ti-dmai-apps = True
INSANE_SKIP_ti-dmai-tests = True

PACKAGE_ARCH = "${MACHINE_ARCH}"
INHIBIT_PACKAGE_STRIP = "1"
PACKAGES += "ti-dmai-apps ti-dmai-tests"
FILES_ti-dmai-apps = "${installdir}/dmai-apps/*"
FILES_ti-dmai-tests = "${installdir}/dmai-tests/*"

# run time dependencies
RDEPENDS_ti-dmai-apps_dm355 += "ti-dm355mm-module ti-cmem-module ti-codecs-dm355"
RDEPENDS_ti-dmai-apps_dm6446 += "ti-cmem-module ti-dsplink-module ti-codecs-dm6446"
RDEPENDS_ti-dmai-apps_omap3 += "ti-cmem-module ti-dsplink-module ti-codecs-omap3530 ti-lpm-module ti-sdma-module"
RDEPENDS_ti-dmai-apps_omapl137 += "ti-cmem-module ti-dsplink-module ti-codecs-omapl137"
RDEPENDS_ti-dmai-apps_omapl138 += "ti-cmem-module ti-dsplink-module ti-codecs-omapl138"

repository: demsey/openembedded

repo_name: demsey/openembedded


text:
require x11-xserver-utils.inc

DESCRIPTION = "a tool for setting miscellaneous X server parameters"

LIC_FILES_CHKSUM = "file://COPYING;md5=bea81cc9827cdf1af0e12c2b8228cf8d"

S = "${DEBIAN_UNPACK_DIR}/xset"

repository: manut/meta-combo

repo_name: manut/meta-combo

branch_name: refs/heads/morty

gha_language: BitBake


text:
# Copyright (C) 2013-2016 Freescale Semiconductor
# Copyright 2017 NXP
# Released under the MIT license (see COPYING.MIT for the terms)

SUMMARY = "Linux Kernel provided and supported by SECO"
DESCRIPTION = "Linux Kernel provided and supported by SECO based on NXP"

require recipes-kernel/linux/linux-imx.inc
require recipes-kernel/linux/linux-imx-src.inc
require recipes-kernel/linux/linux-dtb.inc

DEPENDS += "lzop-native bc-native"

LICENSE = "GPLv2+"
LIC_FILES_CHKSUM = "file://COPYING;md5=d7810fab7487fb0aad327b76f1be7cd7"

PV = "4.9.51"

SCMVERSION = "n"
SRC_URI = "git://secogit.seco.com/imx8/linux-kernel-4-9-51-imx8mq-ga.git;protocol=https;user=user:password file://defconfig"
#SRC_URI = "git:///home/seco/linux-kernel-4-9-51-imx8mq-ga.git; \
#	file://defconfig"

SRCREV = "${AUTOREV}"

KERNEL_DEVICETREE = " \
	seco/fsl-imx8mq-seco-c12.dtb \
	\
	seco/overlays/fsl-imx8mq-seco-c12-dual-display.dtbo \
	seco/overlays/fsl-imx8mq-seco-c12-lcdif-sn65dsi84.dtbo \
	seco/overlays/fsl-imx8mq-seco-c12-wilink.dtbo \
"


text:
file(REMOVE_RECURSE
  "CMakeFiles/nova_server_main_debug.dir/novalsm/nova_server_main.cpp.o"
  "nova_server_main_debug"
  "nova_server_main_debug.pdb"
)

# Per-language clean rules from dependency scanning.
foreach(lang CXX)
  include(CMakeFiles/nova_server_main_debug.dir/cmake_clean_${lang}.cmake OPTIONAL)
endforeach()

repository: sarthakdadhakar/power-of-d

repo_name: sarthakdadhakar/power-of-d

branch_name: refs/heads/main

extension: cmake


text:
@Manual{R-AirSensor,
  title = {AirSensor: Process and Display Data from Air Quality Sensors},
  author = {Jonathan Callahan and Hans Martin and Kayleigh Wilson and Tate Brasel and Helen Miller},
  year = {2020},
  note = {R package version 1.0.3},
  url = {https://github.com/MazamaScience/AirSensor},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/},
}

@Manual{R-broom,
  title = {broom: Convert Statistical Objects into Tidy Tibbles},
  author = {David Robinson and Alex Hayes and Simon Couch},
  year = {2020},
  note = {R package version 0.7.3},
  url = {https://CRAN.R-project.org/package=broom},
}

@Manual{R-caret,
  title = {caret: Classification and Regression Training},
  author = {Max Kuhn},
  year = {2020},
  note = {R package version 6.0-86},
  url = {https://github.com/topepo/caret/},
}

@Manual{R-chron,
  title = {chron: Chronological Objects which can Handle Dates and Times},
  author = {David James and Kurt Hornik},
  year = {2020},
  note = {R package version 2.3-56},
  url = {https://CRAN.R-project.org/package=chron},
}

@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2020},
  note = {R package version 1.13.6},
  url = {https://CRAN.R-project.org/package=data.table},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel {
             Henry} and Kirill Müller},
  year = {2020},
  note = {R package version 1.0.2},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.3},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-gtools,
  title = {gtools: Various R Programming Tools},
  author = {Gregory R. Warnes and Ben Bolker and Thomas Lumley},
  year = {2020},
  note = {R package version 3.8.2},
  url = {https://github.com/r-gregmisc/gtools},
}

@Manual{R-installr,
  title = {installr: Using R to Install Stuff on Windows OS (Such As: R, Rtools,
RStudio, Git, and More!)},
  author = {Tal Galili},
  year = {2019},
  note = {R package version 0.22.0},
  url = {https://CRAN.R-project.org/package=installr},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
  author = {Hao Zhu},
  year = {2020},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2020},
  note = {R package version 0.20-41},
  url = {http://lattice.r-forge.r-project.org/},
}

@Manual{R-MazamaSpatialUtils,
  title = {MazamaSpatialUtils: Spatial Data Download and Utility Functions},
  author = {Jonathan Callahan and Rachel Carroll and Eli Grosman and Roger Andre and Tom Bergamaschi and Tina Chen and Ruby Fore and Will Leahy and Helen Miller and Henry Nguyen and Robin Winstanley and Alice Yang},
  year = {2020},
  note = {R package version 0.7.3},
  url = {https://github.com/MazamaScience/MazamaSpatialUtils},
}

@Manual{R-openair,
  title = {openair: Tools for the Analysis of Air Pollution Data},
  author = {David Carslaw and Karl Ropkins},
  year = {2020},
  note = {R package version 2.8-1},
  url = {https://davidcarslaw.github.io/openair/},
}

@Manual{R-prodlim,
  title = {prodlim: Product-Limit Estimation for Censored Event History Analysis},
  author = {Thomas A. Gerds},
  year = {2019},
  note = {R package version 2019.11.13},
  url = {https://CRAN.R-project.org/package=prodlim},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester},
  year = {2020},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-sp,
  title = {sp: Classes and Methods for Spatial Data},
  author = {Edzer Pebesma and Roger Bivand},
  year = {2021},
  note = {R package version 1.4-5},
  url = {https://CRAN.R-project.org/package=sp},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2020},
  note = {R package version 3.0.4},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham},
  year = {2021},
  note = {R package version 1.1.3},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-weathercan,
  title = {weathercan: Download Weather Data from Environment and Climate Change Canada},
  author = {Steffi LaZerte},
  year = {2021},
  note = {R package version 0.6.1},
  url = {https://CRAN.R-project.org/package=weathercan},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  publisher = {Springer},
  address = {New York},
  year = {2008},
  note = {ISBN 978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Article{openair2012,
  title = {openair --- An R package for air quality data analysis},
  author = {David C. Carslaw and Karl Ropkins},
  journal = {Environmental Modelling & Software},
  volume = {27--28},
  number = {0},
  pages = {52--61},
  year = {2012},
  issn = {1364-8152},
  doi = {10.1016/j.envsoft.2011.09.008},
}

@Article{sp2005,
  author = {Edzer J. Pebesma and Roger S. Bivand},
  title = {Classes and methods for spatial data in {R}},
  journal = {R News},
  year = {2005},
  volume = {5},
  number = {2},
  pages = {9--13},
  month = {November},
  url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Book{sp2013,
  author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
  title = {Applied spatial data analysis with {R}, Second edition},
  year = {2013},
  publisher = {Springer, NY},
  url = {https://asdar-book.org/},
}

@Article{weathercan2018,
  title = {{weathercan}: {D}ownload and format weather data from Environment and Climate Change Canada},
  author = {Stefanie E LaZerte and Sam Albers},
  journal = {The Journal of Open Source Software},
  volume = {3},
  number = {22},
  pages = {571},
  year = {2018},
  url = {https://joss.theoj.org/papers/10.21105/joss.00571},
}

@misc{Yong2016,
author = {Yong, Zhou},
mendeley-groups = {JAS_Tutorial},
title = {{Digital universal particle concentration sensor, PMS5003 series data manual}},
url = {http://www.aqmd.gov/docs/defaultsource/%0Aaq-spec/resources-page/plantower-pms5003-manual_v2-3.pdf},
urldate = {June 10, 2021},
year = {2016}
}

@techreport{Duvall2021,
address = {Washington, D.C.},
author = {Duvall, R. and Clements, A. and Hagler, G. and Kamal, A. and Kilaru, Vasu J. and Goodman, L. and Frederick, S. and {Jonhson Barkjon}, K. and VonWold, I. and Greene, D. and Dye, T.},
institution = {U.S. EPA Office of Research and Development},
mendeley-groups = {JAS_Tutorial},
pages = {EPA/600/R--20/280},
title = {{Performance Testing Protocols, Metrics, and Target Values for Fine Particulate Matter Air Sensors: Use in Ambient, Outdoor, Fixed Site, Non-Regulatory Supplemental and Informational Monitoring Applications}},
url = {https://cfpub.epa.gov/si/si_public_record_Report.cfm?dirEntryId=350785&Lab=CEMM},
year = {2021}
}

@Manual{RStudio, title = {RStudio: Integrated Development Environment for R}, author = {{RStudio Team}}, organization = {RStudio, PBC.}, address = {Boston, MA}, year = {2020}, url = {http://www.rstudio.com/} }

@Manual{R-rmarkdown,
    title = {rmarkdown: Dynamic Documents for R},
    author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
    year = {2020},
    note = {R package version 2.6},
    url = {https://github.com/rstudio/rmarkdown}
  }

@article{Feenstra2020,
title = {The AirSensor open-source R-package and DataViewer web application for interpreting community data collected by low-cost sensor networks},
journal = {Environmental Modelling & Software},
volume = {134},
pages = {104832},
year = {2020},
issn = {1364-8152},
doi = {https://doi.org/10.1016/j.envsoft.2020.104832},
url = {https://www.sciencedirect.com/science/article/pii/S1364815220308896},
author = {Brandon Feenstra and Ashley Collier-Oxandale and Vasileios Papapostolou and David Cocker and Andrea Polidori}
}

 @Manual{R-PWFSLSmoke,
    title = {PWFSLSmoke: Utilities for Working with Air Quality Monitoring Data},
    author = {Jonathan Callahan and Hans Martin and Spencer Pease and Helen Miller and Zach Dingels and Rohan Aras and Jon Hagg and Jimin Kim and Rex Thompson and Alice Yang},
    year = {2020},
    note = {R package version 1.2.111},
    url = {https://CRAN.R-project.org/package=PWFSLSmoke},
  }

@article{Malings2020,
annote = {doi: 10.1080/02786826.2019.1623863},
author = {Malings, Carl and Tanzer, Rebecca and Hauryliuk, Aliaksei and Saha, Provat K and Robinson, Allen L and Presto, Albert A and Subramanian, R},
doi = {10.1080/02786826.2019.1623863},
issn = {0278-6826},
journal = {Aerosol Science and Technology},
mendeley-groups = {Delta Hospital Study,JAS_Tutorial},
month = {feb},
number = {2},
pages = {160--174},
publisher = {Taylor & Francis},
title = {{Fine particle mass monitoring with low-cost sensors: Corrections and long-term performance evaluation}},
url = {https://doi.org/10.1080/02786826.2019.1623863},
volume = {54},
year = {2020}
}

@Article{Muggeo2003,
    title = {Estimating regression models with unknown break-points.},
    author = {Vito M.R. Muggeo},
    journal = {Statistics in Medicine},
    year = {2003},
    volume = {22},
    pages = {3055--3071},
  }

@Article{R-segmented,
    title = {segmented: an R Package to Fit Regression Models with
      Broken-Line Relationships.},
    author = {Vito M.R. Muggeo},
    year = {2021},
    note = {R package version 1.3-4},
    url = {https://CRAN.R-project.org/package=segmented},
  }
}

@Article{Carslaw2012,
    title = {openair --- An R package for air quality data analysis},
    author = {David C. Carslaw and Karl Ropkins},
    journal = {Environmental Modelling & Software},
    volume = {27--28},
    number = {0},
    pages = {52--61},
    year = {2012},
    issn = {1364-8152},
    doi = {10.1016/j.envsoft.2011.09.008},
  }

repository: nzimmerman-ubc/lcs-PM-demo

repo_name: nzimmerman-ubc/lcs-PM-demo


text:
% This file was created with JabRef 2.10.
% Encoding: UTF8

@inproceedings{LPMW16,
  author    = {K. Liao and M. Petri and A. Moffat and A. Wirth},
  title     = {Effective Construction of Relative {L}empel-{Z}iv Dictionaries},
  booktitle = {Proceedings of WWW 2016},
  pages     = {807--816},
  year      = {2016},
  month     = {11--15 April},
  Address   = {Montreal, Canada},
  Publisher = {IW3C2, Geneva, Switzerland},
}

@inproceedings{CoxEtAl16,
  author    = {A. J. Cox and
               A. Farruggia and
               T. Gagie and
               S. J. Puglisi and
               J. Sir{\'{e}}n},
  title     = {{RLZAP}: Relative {L}empel-{Z}iv with Adaptive Pointers},
  booktitle = {Proceedings of SPIRE 2016},
  pages     = {1--14},
  year      = {2016},
  month     = {18--20 October},
  address   = {Beppu, Japan},
  publisher = {Springer, Berlin, Germany}
}

@inproceedings{Siren17,
  author    = {J. Sir{\'{e}}n},
  title     = {Indexing Variation Graphs},
  booktitle = {Proceedings of ALENEX 2017},
  pages     = {13--27},
  year      = {2017},
  month     = {17--18 January},
  address   = {Barcelona, Spain},
  publisher = {SIAM}
}

@article{SVM14,
  author    = {J. Sir{\'{e}}n and
               N. V{\"{a}}lim{\"{a}}ki and
               V. M{\"{a}}kinen},
  title     = {Indexing Graphs for Path Queries with Applications in Genome Research},
  journal   = {ACM/IEEE Transactions on Computational Biology and Bioinformatics},
  volume    = {11},
  number    = {2},
  pages     = {375--388},
  year      = {2014}
}

@inproceedings{MaciucaEtAl16,
  title={A natural encoding of genetic variation in a {Burrows-Wheeler Transform} to enable mapping and genome inference},
  author={Maciuca, S. and del Ojo Elias, C. and McVean, G. and Iqbal, Z.},
  booktitle={Proceedings of WABI 2016},
  pages={222--233},
  year={2016},
  month = {22--24 August},
  address = {Aarhus, Denmark},
  publisher = {Springer, Berlin, Germany}
}

@unpublished{PatenEtAl17,
  title={Genome graphs and the evolution of genome inference},
  author={Paten, B. and Novak, A. M. and Eizenga, J. M. and Garrison, E.},
  note={Accepted to Genome Research},
  year={2017}
}

@article{IqbalEtAl12,
  title={De novo assembly and genotyping of variants using colored {de Bruijn} graphs},
  author={Iqbal, Z. and Caccamo, M. and Turner, I. and Flicek, P. and McVean, G.},
  journal={Nature Genetics},
  volume={44},
  number={2},
  pages={226--232},
  year={2012},
  publisher={Nature Research}
}

@unpublished{NaEtAl17,
  author    = {J.-C. Na and
               H. Kim and
               S. Min and
               H. Park and
               T. Lecroq and
               M. L{\'{e}}onard and
               L. Mouchard and
               K. Park},
  title     = {{FM}-index of Alignment with Gaps},
  note   = {Accepted to Theoretical Computer Science},
  year = {2017}
}

@article{NaKPLLMP16,
  author    = {J. C. Na and
               H. Kim and
               H. Park and
               T. Lecroq and
               M. L{\'{e}}onard and
               L. Mouchard and
               K. Park},
  title     = {{FM}-index of alignment: {A} compressed index for similar strings},
  journal   = {Theoretical Computer Science},
  volume    = {638},
  pages     = {159--170},
  year      = {2016}
}

@inproceedings{ NPLHLMP13,
  author    = {J. C. Na and H. Park and S. Lee and M. Hong and T. Lecroq and
               L. Mouchard and K. Park},
  title     = {Suffix Array of Alignment: {A} Practical Index for Similar Data},
  booktitle = {Proceedings of SPIRE 2013},
  pages     = {243--254},
  year      = {2013},
  month     = {7--9 October},
  address   = {Jerusalem, Israel},
  publisher = {Springer, Berlin, Germany}
}

@inproceedings{ NPCHIMP13,
  author    = {J. C. Na and H. Park and M. Crochemore and J. Holub and
               C. S. Iliopoulos and L. Mouchard and K. Park},
  title     = {Suffix Tree of Alignment: An Efficient Index for Similar Data},
  booktitle = {Proceedings of IWOCA 2013},
  pages     = {337--348},
  year      = {2013},
  month     = {10--12 July},
  address   = {Rouen, France},
  publisher = {Springer, Berlin, Germany}
}

@article { KBSCZ12,
        AUTHOR = "S. Kuruppu and B. Beresford-Smith and T. C. Conway and
                  J. Zobel",
        TITLE = "Iterative dictionary construction for compression of large
                 {DNA} data sets",
        JOURNAL = "IEEE/ACM Transactions on Computational Biology and
                   Bioinformatics",
        VOLUME = {9},
        PAGES = {137--149},
        YEAR = {2012}
}

@inproceedings { BCGPR15,
        author = {D. Belazzougui and F. Cunial and T. Gagie and N. Prezza and
                M. Raffinot},
        title = {Composite repetition-aware data structures},
        booktitle = {Proceedings of CPM 2015},
        PAGES = {26--39},
        YEAR = {2015},
        month = {29 June -- 1 July},
        address = {Ischia Island, Italy},
        publisher = {Springer, Berlin, Germany}
}

@PHDTHESIS { Ock15,
        AUTHOR = "C. Ocker",
        TITLE = "Engineering Fully-Compressed Suffix Trees",
        SCHOOL = "Karlsruhe Institute of Technology, Germany",
        YEAR = {2015},
        TYPE = {{M.Sc.}\ thesis,}
        }

@Article{Abeliuk2013,
  Title                    = {Practical Compressed Suffix Trees},
  Author                   = {A. Abeliuk and R. Cánovas and G.  Navarro},
  Journal                  = {Algorithms},
  Year                     = {2013},
  Number                   = {2},
  Pages                    = {319-351},
  Volume                   = {6},
  Doi                      = {10.3390/a6020319}
}

@Article{Abouelhoda2004,
  Title                    = {Replacing suffix trees with enhanced suffix
arrays},
  Author                   = {M. I. Abouelhoda and S. Kurtz and
E. Ohlebusch},
  Journal                  = {Journal of Discrete Algorithms},
  Year                     = {2004},
  Number                   = {1},
  Pages                    = {53-86},
  Volume                   = {2},
  Doi                      = {10.1016/S1570-8667(03)00065-0}
}

@InProceedings{Belazzougui2014,
  Title                    = {Relative {FM}-indexes},
  Author                   = {D. Belazzougui and T. Gagie and S.
Gog and G. Manzini and J. Sirén},
  Booktitle                = {Proceedings of SPIRE 2014},
  Pages                    = {52-64},
  Year                     = {2014},
  month                    = {20--22 October},
  address                  = {Ouro Preto, Brazil},
  Publisher                = {Springer, Berlin, Germany}
}

@Article{BLRSRW15,
  Title                    = {Random Access to Grammar-Compressed Strings and Trees},
  Author                   = {P. Bille and
 G. M. Landau and
 R. Raman and
 K. Sadakane and
 S. S. Rao and
 O. Weimann},
  Journal                  = {SIAM Journal on Computing},
  Year                     = {2015},
  Number                   = {3},
  Pages                    = {513--539},
  Volume                   = {44}
}

@inproceedings{Boucher2015,
  author    = {C. Boucher and A. Bowe and T. Gagie and G. Manzini and
               J. Sir{\'{e}}n},
  title     = {Relative Select},
  Booktitle = {Proceedings of SPIRE 2015},
  pages     = {149--155},
  year      = {2015},
  month     = {1--4 September},
  address   = {London, UK},
  publisher = {Springer, Berlin, Germany}
}

@ARTICLE{ Brisaboa2009,
          TITLE = "{DACs}: Bringing Direct Access to Variable-Length Codes",
          AUTHOR = "N. R. Brisaboa and S. Ladra and G. Navarro",
          JOURNAL = "Information Processing and Management",
          VOLUME = 49,
          NUMBER = 1,
          PAGES = "392--404",
          YEAR = 2013
        }

@TechReport{Burrows1994,
  Title                    = {A block sorting lossless data compression
algorithm},
  Author                   = {Burrows, M. and Wheeler, D. J.},
  Institution              = {Digital Equipment Corporation},
  address                  = {Palo Alto, CA},
  Year                     = {1994},
  Number                   = {124}
}

@Article{Chang1994,
  Title                    = {Sublinear Approximate String Matching and
Biological Applications},
  Author                   = {W. I. Chang and E. L. Lawler},
  Journal                  = {Algorithmica},
  Year                     = {1994},
  Number                   = {4-5},
  Pages                    = {327-344},
  Volume                   = {12},
  Doi                      = {10.1007/BF01185431}
}

@Article{CLLPPSS05,
  Title                    = {The smallest grammar problem},
  Author                   = {M. Charikar and E. Lehman and D. Liu and R. Panigrahy and
 M. Prabhakaran and A. Sahai and A. Shelat},
  Journal                  = {IEEE Transactions on Information Theory},
  Year                     = {2005},
  Number                   = {7},
  Pages                    = {2554--2576},
  Volume                   = {51}
}

@Article{DG11,
  Title                    = {Robust relative compression of genomes with random access},
  Author                   = {S. Deorowicz and S. Grabowski},
  Journal                  = {Bioinformatics},
  Year                     = {2011},
  Pages                    = {2979--2986},
  Volume                   = {27}
}

@Article{DJSS14,
  Title                    = {Fast relative {Lempel-Ziv} self-index for similar sequences },
  Author                   = {H. H. Do and J. Jansson and K. Sadakane and W.-K. Sung},
  Journal                  = {Theoretical Computer Science },
  Year                     = {2014},
  Pages                    = {14--30},
  Volume                   = {532}
}

@InProceedings{Ferrada2014,
  Title                    = {Relative {L}empel-{Z}iv with Constant-Time
Random Access},
  Author                   = {H. Ferrada and T. Gagie and S. Gog
and S. J. Puglisi},
  Booktitle                = {Proceedings of SPIRE 2014},
  Pages                    = {13-17},
  Year                     = {2014},
  month                    = {20--22 October},
  address                  = {Ouro Preto, Brazil},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-319-11918-2_2},
}

@Article{Ferragina2009a,
  Title                    = {Compressed text indexes: From theory to
practice},
  Author                   = {Ferragina, P. and González, R. and
Navarro, G. and Venturini, R.},
  Journal                  = {ACM Journal of Experimental Algorithmics},
  Year                     = {2009},
  Pages                    = {article 1.12},
  Volume                   = {13},
  Doi                      = {http://doi.acm.org/10.1145/1412228.1455268}
}

@Article{Ferragina2005a,
  Title                    = {Indexing compressed text},
  Author                   = {Ferragina, P. and Manzini, G.},
  Journal                  = {Journal of the ACM},
  Year                     = {2005},
  Number                   = {4},
  Pages                    = {552-581},
  Volume                   = {52},
  Doi                      = {10.1145/1082036.1082039}
}

@Article{Ferragina2007a,
  Title                    = {Compressed representations of sequences and
full-text indexes},
  Author                   = {Ferragina, P. and Manzini, G. and
Mäkinen, V. and Navarro, G.},
  Journal                  = {ACM Transactions on Algorithms},
  Year                     = {2007},
  Number                   = {2},
  Pages                    = {article 20},
  Volume                   = {3},
  Doi                      = {10.1145/1240233.1240243}
}

@article {Fis10,
        author = "J. Fischer",
        title = "Wee {LCP}",
        journal = "Information Processing Letters",
        volume = 110,
        year = 2010,
        pages = "317--320"
        }

@Article{Fischer2009a,
  Title                    = {Faster entropy-bounded compressed suffix trees},
  Author                   = {Fischer, J. and Mäkinen, V. and Navarro,
G.},
  Journal                  = {Theoretical Computer Science},
  Year                     = {2009},
  Number                   = {51},
  Pages                    = {5354-5364},
  Volume                   = {410},
  Doi                      = {10.1016/j.tcs.2009.09.012}
}

@InProceedings{GGKNP14,
  Title                    = {{LZ77}-Based Self-indexing with Faster Pattern Matching},
  Author                   = {T. Gagie and P. Gawrychowski and J. K{\"{a}}rkk{\"{a}}inen and
 Y. Nekrich and S. J. Puglisi},
  Booktitle                = {Proceedings of LATIN 2014},
  Pages                    = {731--742},
  Year                     = {2014},
  Month                    = {31 March -- 4 April},
  Address                  = {Montevideo, Uruguay},
  Publisher                = {Springer, Berlin, Germany}
}

@InProceedings{GGKNP12,
  Title                    = {A Faster Grammar-Based Self-index},
  Author                   = {T. Gagie and P. Gawrychowski and J. K{\"{a}}rkk{\"{a}}inen and
 Y. Nekrich and S. J. Puglisi},
  Booktitle                = {Proceedings of LATA 2012},
  Pages                    = {240--251},
  Year                     = {2012},
  Month                    = {5--9 March},
  Address                  = {Tarragona, Spain},
  Publisher                = {Springer, Berlin, Germany}
}

@Article{GP15,
  Title                    = {Searching and Indexing Genomic Databases via Kernelization},
  Author                   = {T. Gagie and S. J. Puglisi},
  Journal                  = {Frontiers in Bioengineering and Biotechnology},
  Year                     = {2015},
  Number                   = {12},
  Volume                   = {3}
}

@PhdThesis{Gog2011a,
  Title                    = {Compressed Suffix Trees: Design, Construction,
and Applications},
  Author                   = {S. Gog},
  School                   = {Ulm University, Germany},
  Year                     = {2011}
}

@InProceedings{Gog2014b,
  Title                    = {From Theory to Practice: Plug and Play with
Succinct Data Structures},
  Author                   = {S. Gog and T. Beller and A. Moffat
and M. Petri},
  Booktitle                = {Proceedings of SEA 2014},
  Pages                    = {326-337},
  Year                     = {2014},
  Month                    = {29 June -- 1 July},
  Address                  = {Copenhagen, Denmark},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-319-07959-2_28}
}

@InProceedings{Grossi2003,
  Title                    = {High-order entropy-compressed text indexes},
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J. S.},
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  Pages                    = {841-850},
  Year                     = {2003},
  Month                    = {12--14 January},
  Address                  = {Baltimore, MD},
  Publisher                = {SIAM}
}

@Article{Grossi2005,
  Title                    = {Compressed Suffix Arrays and Suffix Trees with
Applications to Text Indexing and String Matching},
  Author                   = {Grossi, R. and Vitter, J. S.},
  Journal                  = {SIAM Journal on Computing},
  Year                     = {2005},
  Number                   = {2},
  Pages                    = {378-407},
  Volume                   = {35},
  Doi                      = {10.1137/S0097539702402354}
}

@Book{Gus97,
  Title                    = {Algorithms on Strings, Trees and Sequences: Computer
 Science and Computational Biology},
  Author                   = {D. Gusfield},
  Publisher                = {Cambridge University Press},
  Address                  = {Cambridge, UK},
  Year                     = {1997}
}

@InProceedings{Kaerkkaeinen2011,
  Title                    = {Fixed Block Compression Boosting in
{FM}-Indexes},
  Author                   = {J. Kärkkäinen and S. J. Puglisi},
  Booktitle                = {Proceedings of SPIRE 2011},
  Pages                    = {174-184},
  Year                     = {2011},
  Month                    = {17--21 October},
  Address                  = {Pisa, Italy},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-642-24583-1_18}
}

@Article{KY00,
  Title                    = {Grammar-based codes: {A} new class of universal lossless source codes},
  Author                   = {J. C. Kieffer and E.-H. Yang},
  Journal                  = {IEEE Transactions on Information Theory},
  Year                     = {2000},
  Number                   = {3},
  Pages                    = {737--754},
  Volume                   = {46}
}

@Article{KN13,
  Title                    = {On Compressing and Indexing Repetitive Sequences},
  Author                   = {S. Kreft and G. Navarro},
  Journal                  = {Theoretical Computer Science},
  Year                     = {2013},
  Pages                    = {115--133},
  Volume                   = {483}
}

@Article{Kurtz1999,
  Title                    = {Reducing the space requirement of suffix trees},
  Author                   = {Kurtz, S.},
  Journal                  = {Software: Practice and Experience},
  Year                     = {1999},
  Number                   = {13},
  Pages                    = {1149-1171},
  Volume                   = {29},
  Doi                      = {10.1002/(SICI)1097-024X(199911)29:13<1149::AID-SPE274>3.0.CO;2-O}
}

@InProceedings{KPZ11,
  Title                    = {Reference Sequence Construction for Relative Compression of Genomes},
  Author                   = {S. Kuruppu and
 S. J. Puglisi and
 J. Zobel},
  Booktitle                = {Proceedings of SPIRE 2011},
  Pages                    = {420--425},
  Year                     = {2011},
  Month                    = {17--21 October},
  Address                  = {Pisa, Italy},
  Publisher                = {Springer, Berlin, Germany}
}

@InProceedings{Kuruppu2010,
  Title                    = {Relative {L}empel-{Z}iv Compression of Genomes
for Large-Scale Storage and Retrieval},
  Author                   = {Kuruppu, S. and Puglisi, S. J. and
Zobel, J.},
  Booktitle                = {Proceedings of SPIRE 2010},
  Pages                    = {201-206},
  Year                     = {2010},
  Month                    = {11--13 October},
  Address                  = {Los Cabos, Mexico},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-642-16321-0_20}
}

@Book{MBCT15,
  Title                    = {Genome-Scale Algorithm Design},
  Author                   = {V. M{\"a}kinen and D. Belazzougui and F. Cunial and A. I. Tomescu},
  Publisher                = {Cambridge University Press},
  Address                  = {Cambridge, UK},
  Year                     = {2015}
}

@Article{Maekinen2005,
  Title                    = {Succinct suffix arrays based on run-length
encoding},
  Author                   = {Mäkinen, V. and Navarro, G.},
  Journal                  = {Nordic Journal of Computing},
  Year                     = {2005},
  Number                   = {1},
  Pages                    = {40-66},
  Volume                   = {12}
}

@Article{Manber1993,
  Title                    = {Suffix Arrays: A New Method for On-Line String
Searches},
  Author                   = {U. Manber and G. Myers},
  Journal                  = {SIAM Journal on Computing},
  Year                     = {1993},
  Number                   = {5},
  Pages                    = {935-948},
  Volume                   = {22},
  Doi                      = {10.1137/0222058}
}

@ARTICLE{
        Navarro2015,
        AUTHOR = "G. Navarro and A. Ord{\'o\~n}ez",
        TITLE = "Faster Compressed Suffix Trees for Repetitive Text Collections",
        JOURNAL = "ACM Journal of Experimental Algorithmics",
        VOLUME = 21,
        NUMBER = 1,
        PAGES = "article 1.8",
        YEAR = "2016",
    }

@InProceedings{Navarro2014a,
  Title                    = {Fast Fully-Compressed Suffix Trees},
  Author                   = {G. Navarro and L. M. S. Russo},
  Booktitle                = {Proceedings of DCC 2014},
  Pages                    = {283-291},
  Year                     = {2014},
  Month                    = {26--28 March},
  Address                  = {Snowbird, UT},
  Publisher                = {IEEE, Los Alamitos, CA},
  Doi                      = {10.1109/DCC.2014.40}
}

@Book{Ohl13,
  Title                    = {Bioinformatics Algorithms: Sequence Analysis, Genome Rearrangements,
 and Phylogenetic Reconstruction},
  Author                   = {E. Ohlebusch},
  Publisher                = {Oldenbusch Verlag},
  Address                  = {Germany},
  Year                     = {2013}
}

@InProceedings{Ohlebusch2010,
  Title                    = {{CST++}},
  Author                   = {Ohlebusch, E. and Fischer, J. and Gog, S.},
  Booktitle                = {Proceedings of SPIRE 2010},
  Year                     = {2010},
  Month                    = {11--13 October},
  Address                  = {Los Cabos, Mexico},
  Pages                    = {322-333},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-642-16321-0_34}
}

@article{ GO13b,
  author    = {S. Gog and E. Ohlebusch},
  title     = {Compressed suffix trees: Efficient computation and storage of LCP-values},
  journal   = {ACM Journal of Experimental Algorithmics},
  volume    = {18},
  year      = {2013},
  pages = "article 2.1"
}

@InProceedings{Ohlebusch2009,
  Title                    = {A Compressed Enhanced Suffix Array Supporting
Fast String Matching},
  Author                   = {Ohlebusch, E. and Gog, S.},
  Booktitle                = {Proceedings of SPIRE 2009},
  Year                     = {2009},
  Month                    = {25--27 August},
  Address                  = {Saariselkä, Finland},
  Pages                    = {51-62},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-642-03784-9_6}
}

@InProceedings{Ohlebusch2010a,
  Title                    = {Computing Matching Statistics and Maximal Exact
Matches on Compressed Full-Text Indexes},
  Author                   = {E. Ohlebusch and S. Gog and A. Kügel},
  Booktitle                = {Proceedings of SPIRE 2010},
  Year                     = {2010},
  Month                    = {11--13 October},
  Address                  = {Los Cabos, Mexico},
  Pages                    = {347-358},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-642-16321-0_36}
}

@InProceedings{Okanohara2007,
  Title                    = {Practical Entropy-Compressed Rank/Select
Dictionary},
  Author                   = {Okanohara, D. and Sadakane, K.},
  Booktitle                = {Proceedings of ALENEX 2007},
  Pages                    = {60-70},
  Year                     = {2007},
  Month                    = {6 January},
  Address                  = {New Orleans, LA},
  Publisher                = {SIAM}
}

@Article{Raman2007,
  Title                    = {Succinct indexable dictionaries with
applications to encoding $k$-ary trees, prefix sums and multisets},
  Author                   = {R. Raman and V. Raman and S.
Rao Satti},
  Journal                  = {ACM Transactions on Algorithms},
  Year                     = {2007},
  Number                   = {4},
  Pages                    = {article 43},
  Volume                   = {3},
  Doi                      = {10.1145/1290672.1290680}
}

@Article{Rozowsky2011,
  Title                    = {{AlleleSeq}: analysis of allele-specific
expression and binding in a network framework},
  Author                   = {J. Rozowsky and others},
  Journal                  = {Molecular Systems Biology},
  Year                     = {2011},
  Number                   = {1},
  Pages                    = {article 522},
  Volume                   = {7},
  Doi                      = {10.1038/msb.2011.54}
}

@Article{Russo2011,
  Title                    = {Fully compressed suffix trees},
  Author                   = {L. M. S. Russo and G. Navarro and A. L. Oliveira},
  Journal                  = {ACM Transactions on Algorithms},
  Year                     = {2011},
  Number                   = {4},
  Pages                    = {article 4},
  Volume                   = {7},
  Doi                      = {10.1145/2000807.2000821}
}

@Article{Sadakane2007,
  Title                    = {Compressed Suffix Trees with Full
Functionality},
  Author                   = {K. Sadakane},
  Journal                  = {Theory of Computing Systems},
  Year                     = {2007},
  Number                   = {4},
  Pages                    = {589-607},
  Volume                   = {41},
  Doi                      = {10.1007/s00224-006-1198-x}
}

@Article{Sadakane2003,
  Title                    = {New text indexing functionalities of the
compressed suffix arrays},
  Author                   = {Sadakane, K.},
  Journal                  = {Journal of Algorithms},
  Year                     = {2003},
  Pages                    = {294-313},
  Volume                   = {48},
  Doi                      = {10.1016/S0196-6774(03)00087-7}
}

@InProceedings{Siren2009,
  Title                    = {Compressed Suffix Arrays for Massive Data},
  Author                   = {Sirén, J.},
  Booktitle                = {Proceedings SPIRE 2009},
  Pages                    = {63-74},
  Year                     = {2009},
  Month                    = {25--27 August},
  Address                  = {Saariselkä, Finland},
  Publisher                = {Springer, Berlin, Germany},
  Doi                      = {10.1007/978-3-642-03784-9_7}
}

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  journal = {Nature},
  year = {2015},
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  pages = {68-64},
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}

@Article{1000GP,
  Title                    = {An integrated map of genetic variation from 1,092 human genomes},
  Author                   = {{The 1000 Genomes Project Consortium}},
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  Title                    = {Linear pattern matching algorithms},
  Author                   = {Weiner, P.},
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  Year                     = {1973},
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  Address                  = {Iowa City, IA},
  Pages                    = {1-11},
  Publisher                = {IEEE},
  Doi                      = {10.1109/SWAT.1973.13}
}

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  Title                    = {A universal algorithm for sequential data compression},
  Author                   = {J. Ziv and A. Lempel},
  Journal                  = {IEEE Transactions on Information Theory},
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  Number                   = {3},
  Pages                    = {337--343},
  Volume                   = {23}
}

repository: jltsiren/relative-fm

repo_name: jltsiren/relative-fm


text:
@article{jla_predictive_2020,
 abstract = {},
 author = {Chen, Fu and Cui, Ying},
 issn = {},
 journal = {Journal of Learning Analytics},
 number = {},
 title = {Utilizing student time series behavior in learning management system for early prediction of course performance},
 urldate = {},
 volume = {},
 year = {2020}
}


text:
require gstreamer1.0-plugins-ugly.inc

LIC_FILES_CHKSUM = "\
    file://COPYING;md5=a6f89e2100d9b6cdffcea4f398e37343 \
    file://tests/check/elements/xingmux.c;beginline=1;endline=21;md5=4c771b8af188724855cb99cadd390068 \
"

SRC_URI = "\
    http://gstreamer.freedesktop.org/src/gst-plugins-ugly/gst-plugins-ugly-${PV}.tar.xz \
    file://0001-introspection.m4-prefix-pkgconfig-paths-with-PKG_CON.patch \
"
SRC_URI[md5sum] = "c68d0509c9980b0b70a4b836ff73fff1"
SRC_URI[sha256sum] = "6386c77ca8459cba431ed0b63da780c7062c7cc48055d222024d8eaf198ffa59"

S = "${WORKDIR}/gst-plugins-ugly-${PV}"

repository: WebPlatformForEmbedded/meta-wpe

repo_name: WebPlatformForEmbedded/meta-wpe


text:
SUMMARY = "Document centric plugin system"
LICENSE = "LGPLv2.1"
LIC_FILES_CHKSUM = " \
	file://COPYING.LIB;md5=2d5025d4aa3495befef8f17206a5b0a1 \
"

inherit kde-kf5 cmake-lib

DEPENDS += " \
    kconfig \
    kcoreaddons \
    ki18n \
    kiconthemes \
    kio \
    kjobwidgets \
    knotifications \
    kservice \
    ktextwidgets \
    kwidgetsaddons \
    kxmlgui \
"

PV = "${KF5_VERSION}"
SRC_URI[md5sum] = "52ddaccaa5848bdfb39b241adf32b63a"
SRC_URI[sha256sum] = "ea187dc45376b53818bf76ed794c988b7793ae21f2683ce010cba995a31b92e3"

# cross libs / headers
CMAKE_ALIGN_SYSROOT[1] = "KF5Parts, -S${libdir}/lib, -S${STAGING_LIBDIR}/lib"
CMAKE_ALIGN_SYSROOT[2] = "KF5Parts, -S${includedir}, -S${STAGING_INCDIR}"

FILES_${PN} += " \
    ${datadir}/k*5 \
    ${OE_QMAKE_PATH_PLUGINS} \
"
FILES_${PN}-dbg += "${OE_QMAKE_PATH_PLUGINS}/.debug"


text:
.tagsContainer {
  flex: 8;
  position: relative;
}
.tags {
  display: flex;
  flex-direction: column;
}
.tags ul {
  list-style-type: none;
  margin: 0;
  padding: 0;
}
.tag {
  color: var(--white-color);
  font-weight: bold;
  background: #65afea;
  float: left;
  padding: 5px 10px;
  border-radius: 5px;
  margin: 5px;
}

.tagInput {
  padding: 5px 10px !important;
}

.delete {
  display: inline-block;
  margin-left: 5px;
  padding: 0 4px;
  width: 15px;
  height: 15px;
  background-color: rgba(0, 0, 0, 0.3);
  color: white;
  font-size: 10px;
  font-weight: bold;
  cursor: pointer;
  border-radius: 50px;
  border: none;
  outline: none;
  user-select: none;
}
.delete:after {
  content: "X";
  width: 15px;
  height: 15px;
  line-height: 15px;
  text-align: center;
}

repository: EYRA-Benchmark/eyra-frontend

repo_name: EYRA-Benchmark/eyra-frontend

gha_language: TypeScript