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extension: css


text:
@InProceedings{pmlr-v162-melo22a,
  title = 	 {Transformers are Meta-Reinforcement Learners},
  author =       {Melo, Luckeciano C},
  booktitle = 	 {Proceedings of the 39th International Conference on Machine Learning},
  pages = 	 {15340--15359},
  year = 	 {2022},
  editor = 	 {Chaudhuri, Kamalika and Jegelka, Stefanie and Song, Le and Szepesvari, Csaba and Niu, Gang and Sabato, Sivan},
  volume = 	 {162},
  series = 	 {Proceedings of Machine Learning Research},
  month = 	 {17--23 Jul},
  publisher =    {PMLR},
  pdf = 	 {https://proceedings.mlr.press/v162/melo22a/melo22a.pdf},
  url = 	 {https://proceedings.mlr.press/v162/melo22a.html},
  abstract = 	 {The transformer architecture and variants presented a remarkable success across many machine learning tasks in recent years. This success is intrinsically related to the capability of handling long sequences and the presence of context-dependent weights from the attention mechanism. We argue that these capabilities suit the central role of a Meta-Reinforcement Learning algorithm. Indeed, a meta-RL agent needs to infer the task from a sequence of trajectories. Furthermore, it requires a fast adaptation strategy to adapt its policy for a new task - which can be achieved using the self-attention mechanism. In this work, we present TrMRL (Transformers for Meta-Reinforcement Learning), a meta-RL agent that mimics the memory reinstatement mechanism using the transformer architecture. It associates the recent past of working memories to build an episodic memory recursively through the transformer layers. We show that the self-attention computes a consensus representation that minimizes the Bayes Risk at each layer and provides meaningful features to compute the best actions. We conducted experiments in high-dimensional continuous control environments for locomotion and dexterous manipulation. Results show that TrMRL presents comparable or superior asymptotic performance, sample efficiency, and out-of-distribution generalization compared to the baselines in these environments.}
}

license: MIT

license_type: permissive

branch_name: refs/heads/master

extension: bib


text:
@Article{PER-GRA:2007,
    Author    = {Perez, Fernando and Granger, Brian E.},
    Title     = {{IP}ython: a System for Interactive Scientific
    Computing},
    Journal   = {Computing in Science and Engineering},
    Volume    = {9},
    Number    = {3},
    Pages     = {21--29},
    month     = may,
    year      = 2007,
    url       = "http://ipython.org",
    ISSN      = "1521-9615",
    doi       = {10.1109/MCSE.2007.53},
    publisher = {IEEE Computer Society},
}

@misc{JupyterHub,
    title = {JupyterHub},
    howpublished = {\url{https://github.com/jupyter/jupyterhub}},
    note = {Accessed: 2015-11-27}
}

@Manual{Bokeh,
    title = {Bokeh: Python library for interactive visualization},
    author = {{Bokeh Development Team}},
    year = {2014},
    url = {http://www.bokeh.pydata.org},
}

@article{d3,
    author = {Bostock, Michael and Ogievetsky, Vadim and Heer, Jeffrey},
    title = {D3 Data-Driven Documents},
    journal = {IEEE Transactions on Visualization and Computer Graphics},
    issue_date = {December 2011},
    volume = {17},
    number = {12},
    month = dec,
    year = {2011},
    issn = {1077-2626},
    pages = {2301--2309},
    numpages = {9},
    url = {http://dx.doi.org/10.1109/TVCG.2011.185},
    doi = {10.1109/TVCG.2011.185},
    acmid = {2068631},
    publisher = {IEEE Educational Activities Department},
    address = {Piscataway, NJ, USA},
    keywords = {Information visualization, user interfaces, toolkits, 2D graphics.},
}

@misc{folium,
    title = {Folium},
    howpublished = {\url{https://github.com/python-visualization/folium}},
    note = {Accessed: 2015-11-27}
}

@misc{leaflet,
    title = {Leaflet},
    howpublished = {\url{http://leafletjs.com/}},
    note = {Accessed: 2015-11-27}
}

@article{docker,
    author = {Merkel, Dirk},
    title = {Docker: Lightweight {Linux} Containers for Consistent Development and Deployment},
    journal = {Linux J.},
    issue_date = {March 2014},
    volume = {2014},
    number = {239},
    month = mar,
    year = {2014},
    issn = {1075-3583},
    articleno = {2},
    url = {http://dl.acm.org/citation.cfm?id=2600239.2600241},
    acmid = {2600241},
    publisher = {Belltown Media},
    address = {Houston, TX},
}

@misc{cosign,
    title = {CoSign},
    howpublished = {\url{http://weblogin.org/}},
    note = {Accessed: 2015-11-27}
}

repository: edinburghlivinglab/dds-notebooks

repo_name: edinburghlivinglab/dds-notebooks


text:
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  nav {
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}
@media (max-width: 1024px) {
	.new-nav {
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		padding: 0px 10px !important;
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	a.navbar-brand img {
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}

/*# sourceMappingURL=media.css.map */

repository: nazeehsalah/test

path: /GL _ Health Insurance_files/media.css

repo_name: nazeehsalah/test


text:
@article{Bondaruk-2020-Assessing,
    title = "Assessing the state of the art in Discrete Global Grid Systems: OGC criteria and present functionality",
    author = "Bondaruk, Ben  and
      Roberts, Steven A.  and
      Robertson, Colin",
    journal = "Geomatica, Volume 74, Issue 1",
    volume = "74",
    number = "1",
    year = "2020",
    publisher = "Canadian Science Publishing",
    url = "https://aclanthology.org/G20-53001",
    doi = "10.1139/geomat-2019-0015",
    pages = "9--30",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

branch_name: refs/heads/main

gha_language: Python


text:
/* ==UserStyle==
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@author         Ha3
@description    `(Can be left enabled)Shows decals in a larger format.This will disable "EQUIPPED" icons.`
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@license        NO-REDISTRIBUTION
@preprocessor   uso
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@-moz-document domain("tf2b.com") {
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branch_name: refs/heads/flomaster

gha_license_id: NOASSERTION


text:
@article{bradley_phylogeny-corrected_2018,
 abstract = {The mechanisms by which different microbes colonize the healthy human gut versus other body sites, the gut in disease states, or other environments remain largely unknown. Identifying microbial genes influencing fitness in the gut could lead to new ways to engineer probiotics or disrupt pathogenesis. We approach this problem by measuring the statistical association between a species having a gene and the probability that the species is present in the gut microbiome. The challenge is that closely related species tend to be jointly present or absent in the microbiome and also share many genes, only a subset of which are involved in gut adaptation. We show that this phylogenetic correlation indeed leads to many false discoveries and propose phylogenetic linear regression as a powerful solution. To apply this method across the bacterial tree of life, where most species have not been experimentally phenotyped, we use metagenomes from hundreds of people to quantify each species' prevalence in and specificity for the gut microbiome. This analysis reveals thousands of genes potentially involved in adaptation to the gut across species, including many novel candidates as well as processes known to contribute to fitness of gut bacteria, such as acid tolerance in Bacteroidetes and sporulation in Firmicutes. We also find microbial genes associated with a preference for the gut over other body sites, which are significantly enriched for genes linked to fitness in an in vivo competition experiment. Finally, we identify gene families associated with higher prevalence in patients with Crohn's disease, including Proteobacterial genes involved in conjugation and fimbria regulation, processes previously linked to inflammation. These gene targets may represent new avenues for modulating host colonization and disease. Our strategy of combining metagenomics with phylogenetic modeling is general and can be used to identify genes associated with adaptation to any environment.},
 author = {Bradley, Patrick H. and Nayfach, Stephen and Pollard, Katherine S.},
 doi = {10.1371/journal.pcbi.1006242},
 file = {Full Text:/home/pbradz/Zotero/storage/QCY2D94M/Bradley et al. - 2018 - Phylogeny-corrected identification of microbial ge.pdf:application/pdf},
 issn = {1553-7358},
 journal = {PLoS computational biology},
 keywords = {Bacteria, Gastrointestinal Microbiome, Gene Expression Regulation, Bacterial, Genes, Microbial, Humans, Metagenome, Metagenomics, Microbiota, Phylogeny},
 language = {eng},
 number = {8},
 pages = {e1006242},
 pmcid = {PMC6084841},
 pmid = {30091981},
 title = {Phylogeny-corrected identification of microbial gene families relevant to human gut colonization},
 volume = {14},
 year = {2018}
}

repository: pbradz/academic-kickstart

repo_name: pbradz/academic-kickstart

gha_license_id: MIT


text: .content.svelte-1ktd7xb h2{font-size:1.4em;font-weight:500}.content.svelte-1ktd7xb pre{background-color:#f9f9f9;box-shadow:inset 1px 1px 5px rgba(0,0,0,0.05);padding:0.5em;border-radius:2px;overflow-x:auto}.content.svelte-1ktd7xb pre code{background-color:transparent;padding:0}.content.svelte-1ktd7xb ul{line-height:1.5}.content.svelte-1ktd7xb li{margin:0 0 0.5em 0}

repository: victorbjorklund/sauna

repo_name: victorbjorklund/sauna


text:
@article{xuWhichMoreImportant2014,
 abstract = {The ISME Journal: Multidisciplinary Journal of Microbial Ecology is the official Journal of the International Society for Microbial Ecology, publishing high-quality, original research papers, short communications, commentary articles and reviews in the rapidly expanding and diverse discipline of microbial ecology.},
 author = {Xu, Zhenjiang and Malmer, Daniel and Langille, Morgan G. I. and Way, Samuel F. and Knight, Rob},
 copyright = {© 2014 Nature Publishing Group},
 doi = {10.1038/ismej.2014.157},
 file = {/Users/zech/Zotero/storage/EX2W9DUP/2014_Xu_et_al_Which_is_more_important_for_classifying_microbial_communities.pdf},
 issn = {1751-7362},
 journal = {ISME J},
 langid = {english},
 month = {December},
 number = {12},
 pages = {2357--2359},
 shorttitle = {Which Is More Important for Classifying Microbial Communities},
 title = {Which Is More Important for Classifying Microbial Communities: Who's There or What They Can Do?},
 urldate = {2014-11-21},
 volume = {8},
 year = {2014}
}

repository: zxlab/lab-web

repo_name: zxlab/lab-web

gha_language: TeX


text:
@article{__2018,
 author = {段志贵},
 journal = {数学通报},
 shorttitle = {构造},
 title = {构造: 让解题突破思维瓶颈},
 volume = {9},
 year = {2018}
}

repository: Duckkkky/starter-academic

repo_name: Duckkkky/starter-academic


text:
@book{elasticsearch,
  title={Elasticsearch: The Definitive Guide},
  author={Gormley, Clinton and Tong, Zachary},
  year={2014},
  publisher={O'Reilly \& Associates}
}

@misc{lucene,
   title = {The Apache Jakarta Project},
   url = {http://lucene.apache.org/},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{gitmerge,
   title = {Git Merge},
   url = {http://git-scm.com/docs/git-merge},
   note = "[Online; accessed 8-July-2015]"
 }

@article{garciamolina1982elections,
  author = {Garcia-Molina, H.},
  doi = {10.1109/TC.1982.1675885},
  interhash = {a5e9817f8abea507b42457299125576b},
  intrahash = {8d7fe93a4167f3e22b176b839434c841},
  issn = {0018-9340},
  journal = {Computers, IEEE Transactions on},
  keywords = {2012 algorithm bully master vsba},
  month = {jan. },
  number = 1,
  pages = {48 -59},
  title = {Elections in a Distributed Computing System},
  volume = {C-31},
  year = 1982
}

@misc{svn,
   title = {Apache Subversion},
   url = {https://subversion.apache.org/},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{cvs,
   title = {Concurrent Version System},
   url = {http://www.nongnu.org/cvs/},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{gitVersionControl,
   title = {Version Control In Git},
   url = {https://git-scm.com/book/en/v2/Getting-Started-About-Version-Control},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{tamingTail,
   title = {Taming Long Tail},
   url = {http://highscalability.com/blog/2012/3/12/google-taming-the-long-latency-tail-when-more-machines-equal.html},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{jeffDean,
   title = {Achieving Rapid Response Times in Large Online Services},
   url = {http://research.google.com/people/jeff/latency.html},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{googleArchitecture,
   title = {THE GOOGLE CLUSTER ARCHITECTURE},
   url = {http://static.googleusercontent.com/media/research.google.com/en//archive/googlecluster-ieee.pdf},
   note = "[Online; accessed 8-July-2015]"
 }

@misc{solr,
   title = {Apache Solr},
   url = {http://lucene.apache.org/solr/},
   note = "[Online; accessed 8-July-2015]"
 }

@article{Cassandra,
 author = {Lakshman, Avinash and Malik, Prashant},
 title = {Cassandra: A Decentralized Structured Storage System},
 journal = {SIGOPS Oper. Syst. Rev.},
 issue_date = {April 2010},
 volume = {44},
 number = {2},
 month = apr,
 year = {2010},
 issn = {0163-5980},
 pages = {35--40},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/1773912.1773922},
 doi = {10.1145/1773912.1773922},
 acmid = {1773922},
 publisher = {ACM},
 address = {New York, NY, USA}
}

@inproceedings{croupier,
  added-at = {2014-12-11T00:00:00.000+0100},
  author = {Dowling, Jim and Payberah, Amir H.},
  biburl = {http://www.bibsonomy.org/bibtex/2ac8ad99c45e4000812565fef6b6fa5b0/dblp},
  booktitle = {ICDCS},
  ee = {http://doi.ieeecomputersociety.org/10.1109/ICDCS.2012.19},
  interhash = {131fcbe19bb41b41242323ba8d2e6c4a},
  intrahash = {ac8ad99c45e4000812565fef6b6fa5b0},
  isbn = {978-1-4577-0295-2},
  keywords = {dblp},
  pages = {102-111},
  publisher = {IEEE Computer Society},
  timestamp = {2015-04-28T17:53:26.000+0200},
  title = {Shuffling with a Croupier: Nat-Aware Peer-Sampling.},
  url = {http://dblp.uni-trier.de/db/conf/icdcs/icdcs2012.html#DowlingP12},
  year = 2012
}

@inproceedings{samplingService,
 author = {Jelasity, M\'{a}rk and Guerraoui, Rachid and Kermarrec, Anne-Marie and van Steen, Maarten},
 title = {The Peer Sampling Service: Experimental Evaluation of Unstructured Gossip-based Implementations},
 booktitle = {Proceedings of the 5th ACM/IFIP/USENIX International Conference on Middleware},
 series = {Middleware '04},
 year = {2004},
 isbn = {3-540-23428-4},
 location = {Toronto, Canada},
 pages = {79--98},
 numpages = {20},
 url = {http://dl.acm.org/citation.cfm?id=1045658.1045666},
 acmid = {1045666},
 publisher = {Springer-Verlag New York, Inc.},
 address = {New York, NY, USA},
}

@book{guerraoui,
	Author = {Cachin, Christian and Guerraoui, Rachid and Rodrigues, Lus},
	Date-Modified = {2015-05-02 11:36:59 +0000},
	Edition = {2nd},
	Isbn = {3642152597, 9783642152597},
	Publisher = {Springer Publishing Company, Incorporated},
	Title = {Introduction to Reliable and Secure Distributed Programming},
	Year = {2011}
}

@inproceedings{sacha2006discovery,
  title={Discovery of stable peers in a self-organising peer-to-peer gradient topology},
  author={Sacha, Jan and Dowling, Jim and Cunningham, Raymond and Meier, Ren{\'e}},
  booktitle={Distributed Applications and Interoperable Systems},
  pages={70--83},
  year={2006},
  organization={Springer}
}

@article{dean13,
 author = {Dean, Jeffrey and Barroso, Luiz Andr{\'e}},
 title = {The Tail at Scale},
 journal = {Commun. ACM},
 issue_date = {February 2013},
 volume = {56},
 number = {2},
 month = feb,
 year = {2013},
 issn = {0001-0782},
 pages = {74--80},
 numpages = {7},
 url = {http://doi.acm.org/10.1145/2408776.2408794},
 doi = {10.1145/2408776.2408794},
 acmid = {2408794},
 publisher = {ACM},
 address = {New York, NY, USA},
}

@article{dynamo,
 author = {DeCandia, Giuseppe and Hastorun, Deniz and Jampani, Madan and Kakulapati, Gunavardhan and Lakshman, Avinash and Pilchin, Alex and Sivasubramanian, Swaminathan and Vosshall, Peter and Vogels, Werner},
 title = {Dynamo: Amazon's Highly Available Key-value Store},
 journal = {SIGOPS Oper. Syst. Rev.},
 issue_date = {December 2007},
 volume = {41},
 number = {6},
 month = oct,
 year = {2007},
 issn = {0163-5980},
 pages = {205--220},
 numpages = {16},
 url = {http://doi.acm.org/10.1145/1323293.1294281},
 doi = {10.1145/1323293.1294281},
 acmid = {1294281},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {performance, reliability, scalability},
}

@inproceedings{van1998gossip,
  title={A gossip-style failure detection service},
  author={Van Renesse, Robbert and Minsky, Yaron and Hayden, Mark},
  booktitle={Middleware’98},
  pages={55--70},
  year={1998},
  organization={Springer}
}

@inproceedings{gradientConvergence,
  author    = {H{\aa}kan Terelius and
               Guodong Shi and
               Jim Dowling and
               Amir H. Payberah and
               Ather Gattami and
               Karl Henrik Johansson},
  title     = {Converging an overlay network to a Gradient topology},
  booktitle = {Proceedings of the 50th {IEEE} Conference on Decision and Control
               and European Control Conference, {CDC-ECC} 2011, Orlando, FL, USA,
               December 12-15, 2011},
  pages     = {7230--7235},
  year      = {2011},
  url       = {http://dx.doi.org/10.1109/CDC.2011.6161194},
  doi       = {10.1109/CDC.2011.6161194},
  timestamp = {Fri, 09 Mar 2012 10:55:13 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/cdc/TereliusSDPGJ11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}

@inproceedings{kompics,
 author = {Arad, Cosmin and Dowling, Jim and Haridi, Seif},
 title = {Message-passing Concurrency for Scalable, Stateful, Reconfigurable Middleware},
 booktitle = {Proceedings of the 13th International Middleware Conference},
 series = {Middleware '12},
 year = {2012},
 isbn = {978-3-642-35169-3},
 location = {ontreal, Quebec, Canada},
 pages = {208--228},
 numpages = {21},
 url = {http://dl.acm.org/citation.cfm?id=2442626.2442640},
 acmid = {2442640},
 publisher = {Springer-Verlag New York, Inc.},
 address = {New York, NY, USA},
 keywords = {component model, compositional concurrency, distributed systems architecture, dynamic reconfiguration, message-passing, multi-core execution, reproducible simulation},
}

@article{bully,
  title={Elections in a distributed computing system},
  author={Garcia-Molina, Hector},
  journal={Computers, IEEE Transactions on},
  volume={100},
  number={1},
  pages={48--59},
  year={1982},
  publisher={IEEE}
}

@article{lamportPaxos,
  title={Paxos made simple},
  author={Lamport, Leslie},
  journal={ACM Sigact News},
  volume={32},
  number={4},
  pages={18--25},
  year={2001}
}

@InProceedings{crdt,
  author = 	 {Marc Shapiro and Nuno Pregui{\c c}a and Carlos Baquero
                  and Marek Zawirski},
  title = 	 {Conflict-free Replicated Data Types},
  booktitle = 	 sss,
  year = 	 2011,
  editor = 	 {Xavier D{\'e}fago and Franck Petit and V. Villain},
  volume = 	 6976,
  series = 	 lncs,
  pages = 	 {386--400},
  address = 	 {Grenoble, France},
  month = 	 oct,
  publisher = springer,
  local-url = {./papers/CRDTs_SSS-2011.pdf},
  doi =          {10.1007/978-3-642-24550-3_29},
  url =          {http://www.springerlink.com/content/3rg39l2287330370/},
  url = 	 {http://lip6.fr/Marc.Shapiro/papers/CRDTs_SSS-2011.pdf},
}

@TechReport{crdtConcurrencyWithoutControl,
Keywords =	 {alg,rep},
  author =	 {Mihai Le{\c t}ia and Nuno Pregui{\c c}a
                  and Marc Shapiro},
  title =	 {{CRDTs}: Consistency without concurrency control},
  institution =	 inria,
  year =	 2009,
  type =	 rr,
  number =	 {RR-6956},
  address =	 rocq,
  month =	 jun,
  local-url =  	 {./papers/RR-6956.pdf},
  url =		 {http://hal.inria.fr/inria-00397981/},
  url =  	 {http://lip6.fr/Marc.Shapiro/papers/RR-6956.pdf},
  x-pays =       {PT, ES}
}

repository: abhimanyubabbar/PartitionAwareSearch

repo_name: abhimanyubabbar/PartitionAwareSearch


text:
@article{davila-epsl-295-187-2010,
 abstract = {We analyze the Pampean foreland (the Pampas) along the
modern flat-slab segment of the south-central Andes between 31
degrees and 33 degrees South latitude and to the east of the
Argentine "flat-slab" province, using flexural and gravity studies
and computations of dynamic topography. Bouguer anomalies and
flexural analysis predict a foredeep of similar to 250 km width
and a peripheral bulge amplitude of similar to 25 m, which match
the regional morphologies of the modern Argentine Pampean Plain.
However, these studies do not account for the subsurface
Miocene-Quaternary basin preservation, represented by sedimentary
thicknesses >400 m and with depocenters >400 km eastward with
respect to flexural models. The discrepancy suggests that two
mechanisms, acting at different wavelengths, influence the
Argentine Pampas. The basin preservation is likely the result of a
large-scale geodynamic forcing. Models of mantle flow, driven by
realistic Flat-slab subduction geometry and density contrasts,
reproduce the depocenter location and the wavelength of subsidence
as well as most of the remaining amplitude. Nonetheless, more
sophisticated studies (e.g. considering lateral viscosity
variations in the mantle wedge) might help reduce the dynamic
amplitudes and better reproduce the observed geological record.
(C) 2010 Elsevier B.V. All rights reserved.},
 author = {Federico M.  Davila and Carolina Lithgow-Bertelloni
and Mario Gimenez},
 entrydate = {2020/07/13},
 journal = {Earth Planetary Science Lett.},
 number = {1-2},
 pages = {187--194},
 title = {Tectonic and dynamic controls on the topography and
subsidence of the Argentine Pampas: The role of the flat
slab},
 volume = {295},
 year = {2010}
}

repository: xiyuanbao/kgb

repo_name: xiyuanbao/kgb


text:
@article{2017arXiv170510378N,
  author = {{Nabi}, R. and {Shpitser}, I.},
  title = "{Fair Inference On Outcomes}",
  journal = {ArXiv e-prints},
  archivePrefix = "arXiv",
  eprint = {1705.10378},
  primaryClass = "stat.ML",
  keywords = {Statistics - Machine Learning},
  year = 2017,
  month = may,
  adsurl = {http://adsabs.harvard.edu/abs/2017arXiv170510378N},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@inproceedings{hardt2016equality,
  title={Equality of opportunity in supervised learning},
  author={Hardt, Moritz and Price, Eric and Srebro, Nati and others},
  booktitle={Advances in Neural Information Processing Systems},
  pages={3315--3323},
  year={2016}
}

@book{pearl2009causality,
  title={Causality: Models, Reasoning, and Inference},
  author={Pearl, Judea},
  year={2009},
  publisher={Cambridge University Press}
}

@article{tchetgen2012semiparametric,
  title={Semiparametric theory for causal mediation analysis: efficiency bounds, multiple robustness, and sensitivity analysis},
  author={Tchetgen, Eric J Tchetgen and Shpitser, Ilya},
  journal={Annals of statistics},
  volume={40},
  number={3},
  pages={1816},
  year={2012},
  publisher={NIH Public Access}
}

@article{miles2015partial,
  title={On partial identification of the pure direct effect},
  author={Miles, Caleb H and Kanki, Phyllis and Meloni, Seema and Tchetgen, Eric J Tchetgen},
  journal={arXiv preprint arXiv:1509.01652},
  year={2015}
}

@inproceedings{pearl2001direct,
  title={Direct and indirect effects},
  author={Pearl, Judea},
  booktitle={Proceedings of the seventeenth conference on uncertainty in artificial intelligence},
  pages={411--420},
  year={2001},
  organization={Morgan Kaufmann Publishers Inc.}
}

@incollection{robins2000marginal,
  title={Marginal structural models versus structural nested models as tools for causal inference},
  author={Robins, James M},
  booktitle={Statistical models in epidemiology, the environment, and clinical trials},
  pages={95--133},
  year={2000},
  publisher={Springer}
}


text:
@thesis{tabouy2019,
  abbr = {PhD thesis},
  title={Impact de l'échantillonnage sur l'inférence de structures dans les réseaux: application aux réseaux d'échanges de graines et à l'écologie},
  author={Tabouy, Timothée},
  year={2019},
  school={Université Paris-Saclay},
  tel = {tel-02414300}
}

@thesis{perrot2019,
  abbr = {PhD thesis},
  title={Méthodes régularisées pour l'analyse de données multivariées en grande dimension: théorie et applications},
  author={Perrot-Dockès, Marie},
  year={2019},
  school={Université Paris-Saclay},
  tel = {tel-02384541}
}

@thesis{sundqvist2020,
  abbr = {PhD thesis},
  title={Stability and selection of the number of groups in unsupervised clustering : application to the classification of triple negative breast cancers},
  author={Sundqvist, Martina},
  year={2020},
  school={Université Paris-Saclay},
  tel = {tel-03164674}
}

@thesis{hulot2020,
  abbr = {PhD thesis},
  title={Analyses de données omiques : clustering et inférence de réseaux},
  author={Hulot, Audrey},
  year={2020},
  school={Université Paris-Saclay},
  tel = {tel-03224181}
}

@thesis{ha2016,
  abbr = {PhD thesis},
  title={A multivariate learning penalized method for a joined
                  inference of gene expression levels and gene
                  regulatory networks},
  author={Ha, Trung},
  year={2016},
  school={Université Paris-Saclay},
  website = {http://www.theses.fr/2016SACLE050}
}

@thesis{chalabi14,
  abbr = {PhD thesis},
  title={Characterizing gene expression reprogramming induced by allopolyploïdy for the wheat},
  author={Chalabi, Smahane},
  year={2014},
  school={Université d'Évry-Val-d'Essonne},
}

@thesis{charbonnier2012,
  abbr = {PhD thesis},
  title={Inférence de réseaux de régulation génétique à partir de
                  données du transcriptome non indépendamment et
                  indentiquement distribuées},
  author={Charbonnier, Camille},
  year={2012},
  school={Université d'Évry-Val-d'Essonne},
  website = {http://www.theses.fr/2012EVRY0022}
}


text:
@article{b6f60209fd4d48409dc300fe8d77bced,
 abstract = {Multivariate polynomials are omnipresent in black-box modelling. They are praised for their flexibility and ease of manipulation yet typically fall short in terms of insight and interpretability. Hence, often an alternative representation is desired. Translating the coupled polynomials into a decoupled form, containing only univariate polynomials has hence become a popular option. In this letter, two new polynomial decoupling techniques are introduced. The features and performance of both methods are illustrated on a nonlinear state-space model identified from data of the forced Duffing oscillator.},
 author = {Decuyper, Jan Rik and Philippe Dreesen and Joannes Schoukens and Mark Runacres and Koen Tiels},
 day = {15},
 doi = {10.1109/LCSYS.2019.2916955},
 issn = {2475-1456},
 journal = {IEEE Control Systems Letters},
 keywords = {nonlinear systems identification, model reduction},
 language = {English},
 month = {5},
 number = {3},
 pages = {745--750},
 publisher = {IEEE},
 title = {Decoupling multivariate polynomials for nonlinear state-space models},
 volume = {3},
 year = {2019}
}

repository: mrunacre/academic-kickstart

repo_name: mrunacre/academic-kickstart


text:
@online{pgas_paper,
    title = {{Partitioned Global Address Space Languages}},
    url = {https://www.researchgate.net/publication/275654065_Partitioned_Global_Address_Space_Languages},
    urldate = {2016}
}

@online{pgas_wiki,
    title = {{Partitioned Global Address Space Languages - Wikipedia}},
    url = {https://en.wikipedia.org/wiki/Partitioned_global_address_space},
    urldate = {2018}
}

@online{chapel,
    title = {{PThe Chapel Parallel Programming Language}},
    url = {https://chapel-lang.org/},
    urldate = {2019}
}

@online{upcpp,
    title = {{Unified Parallel C++}},
    url = {https://bitbucket.org/berkeleylab/upcxx/wiki/Home},
    urldate = {2020}
}

@online{coarray_fortran,
    title = {{Coarray support in gfortran as specified in the Fortran 2008 standard}},
    url = {https://gcc.gnu.org/wiki/Coarray},
    urldate = {2020}
}

@online{titanium,
    title = {{Titanium Project Home Page}},
    url = {http://titanium.cs.berkeley.edu/},
    urldate = {2020}
}

@online{titanium_docs,
    title = {{Titanium Tuorial: Overview of Titanium}},
    url = {http://titanium.cs.berkeley.edu/doc/tutorial.ps},
    urldate = {2020}
}

@online{upc,
    title = {{UPC Home page}},
    url = {https://upc-lang.org/},
    urldate = {2020}
}

@online{berkleyupc,
    title = {{Berkley UPC - Unified Parallel C}},
    url = {https://upc.lbl.gov/},
    urldate = {2020}
}

@online{upc_clang,
    title = {{Clang UPC Tool Set}},
    url = {https://clangupc.github.io/},
    urldate = {2020}
}

@online{upcxx,
    title = {{upcxx / wiki / Home}},
    url = {https://bitbucket.org/berkeleylab/upcxx/wiki/Home},
    urldate = {2020}
}

@online{xmphome,
    title = {{XcalableMP WebSite}},
    url = {https://xcalablemp.org/},
    urldate = {2020}
}

@online{gasnet,
    title = {{GASNet Communication System}},
    url = {https://gasnet.lbl.gov/},
    urldate = {2020}
}

repository: kjarosh/agh-parallel-computing

repo_name: kjarosh/agh-parallel-computing


text:
@techreport{2017-sf,
 author = {於久, 太祐 and 柳澤, 政生 and 戸川, 望},
 institution = {早稲田大学, 早稲田大学, 早稲田大学},
 month = {March},
 title = {連続してハッシュ値を出力しないHMAC-SHA-256回路へのスキャンベース攻撃手法},
 year = {2017}
}


text:
@article{RN907,
 author = {Crawford, N. W. and Cheng, A. and Andrews, N. and Charles, P. G. and Clothier, H. J. and Day, B. and Day, T. and Gates, P. and Macdonnell, R. and Roberts, L. and Rodriguez-Casero, V. and Wijeratne, T. and Kiers, L.},
 journal = {The Medical journal of Australia},
 number = {10},
 pages = {574-578},
 title = {Guillain-Barré syndrome following pandemic (H1N1) 2009 influenza A immunisation in Victoria: a self-controlled case series},
 type = {Journal Article},
 url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84879758167&partnerID=40&md5=2dc00111165e5bb9739f215c587f8f1d
https://www.mja.com.au/system/files/issues/cra10534_fm_0.pdf},
 volume = {197},
 year = {2012}
}


text:
/* App */

ul {
  list-style: none;
}

.container {
  height: 100vh;
  width: 100vw;
  display: flex;
  flex-direction: column;
}

/* Header */
header {
  display: flex;
  background-color: #281d19;
  width: 100%;
  height: 56px;
  align-items: center;
}

.header-menu svg {
  width: 40px;
  fill: #a39d9d;
  padding: 8px;
}

.app-header {
  color: #f2dbc4;
  font-size: 2em;
  font-family: 'Catamaran', sans-serif;
  align-self: center;
  margin-left: 20px;
}
.preloader {
    z-index: 0;
    position: absolute;
    background-color: #f2dbc4;
    width: 100%;
    height: 100%;
    display: inline-flex

}
/* Map */
.map-container {
  display: flex;
  height: 100vh;
  flex-direction: row;
}

.map-container>div{
  transition: all .3s;
}

#map {
  flex: 1 0 0;
}

.map-error {
  font-family: "Catamaran", sans-serif;
  margin: auto;
  padding: 10px;
}

.map-error h3 {
  font-weight: 500;
  font-style: italic;
  text-align: center;
}

/* Beer List */

.beer-list-container {
  font-family: 'Catamaran', sans-serif;
  background-color: #a39d9d;
  width: 0px;
  flex: 0 0 0;
  overflow: hidden;
  padding-bottom: 100px;
  visibility: hidden;
}

.open {
  flex: 0 0 250px;
  visibility: visible;
}

.filter-brewery input {
  width: 90%;
  height: 24px;
  display: block;
  margin: auto;
  margin-top: 10px;
}

.beer-list {
  overflow: scroll;
  height: 100%;
  width: 90%;
  padding: 0;
  margin: auto;
  -webkit-overflow-scrolling: touch
}

.brewery-list-item {
  text-align: center;
  background-color: #d4dad6;
  height: fit-content;
  align-content: center;
}

.brewery-list-item:hover {
  cursor: pointer;
}

.brewery-list-item:hover,
.brewery-list-item:focus {
  background-color: #f2dbc4;
  outline: 0;
}

.brewery-name {
  font-weight: 500;
  font-size: 1.2em;
  line-height: 1.3;
  padding: 10px 5px 0 5px;
}

.brewery-city {
  font-weight: 300;
  font-style: italic;
  font-size: .8em;
  line-height: 1;
  margin-top: -10px;
  padding-top: 0;
}

/* infowindow */
.gm-style-iw {
  max-width: 250px !important;
}

.place {
  display: flex;
  flex-wrap: nowrap;
}

.place a {
   color: #281d19;
}

.place a:visited {
  color: #3f531;
}

.place a:hover,
.place-phone:hover {
  color: #d4dad6;
}

.place-footer img {
  width: 200px;
}

.place-title,
.place-contact,
.place-phone,
.place-web {
  font-size: 1.2em;
  margin: 0 0 0 10px;
}

.place-data {
  font-style: italic;
  margin: 0 0 0 10px;
}

.place-phone {
  color: #3f3531;
  font-weight: bold;
  text-decoration: none;
}

.place-contact,
.place-data,
.place-tip,
.place-phone {
  font-size: .9em;
}
.place-web {
  font-family: 'Catamaran', sans-serif;
  margin-top: 5px;
  font-size: .8em;
  text-align: center;
}

.place-tip {
  font-style: italic;
}

.venue-error {
  color: #3f3531;
  text-align: center;
}

/* Responsive Styles */
@media screen and (min-width: 601px) {
  .foursquare-small {
    display: none;
  }

  .foursquare-large {
    width: 90%;
    margin: 10px auto 10px auto;
    padding: 15px 0 15px 0;
    background-color: #fff;
  }

  .foursquare-large img {
    display: flex;
    width: 90%;
    margin: auto;
  }
}

@media screen and (max-width: 600px) {
  .app-header {
    font-size: 1.4em;
    line-height: 1;
    padding-right: 5px;
  }

  .open {
    flex: 0 0 120px;
  }

  .foursquare-large {
    display: none;
  }

  .foursquare-small {
    font-weight: 300;
    font-size: .7em;
    text-align: center;
    display: block;
    width: 90%;
    margin: 10px auto -5px auto;
    background-color: #fff;
  }

  .foursquare-small img {
    width: 100%;
    height: auto;
    margin-bottom: -10px
  }

  .foursquare-small p {
    margin-bottom: -10px;
  }

  .foursquare-small a {
    text-decoration: none;
  }

  .brewery-name {
    font-size: .9em;
  }

  .brewery-city {
    font-size: .7em;
  }

  .gm-style-iw {
    max-width: 120px !important;
  }

  .place-photo {
    display: none;
  }

  .place-tip {
    font-size: .8em;
  }

  .place-title,
  .place-contact,
  .place-phone,
  .place-web {
    margin: 0;
  }

  .place-title {
    font-size: 1em;
  }

  .place-footer img {
    width: 100%;
  }
}

repository: tommcginty/udacity-map-project

repo_name: tommcginty/udacity-map-project


text:
SUMMARY = "Miscellaneous host interface communication manager"
DESCRIPTION = "Daemon exposes Miscellaneous host interface communications like \
               platform reset, mail box & scratch pad"

PV = "1.0+git${SRCPV}"

S = "${WORKDIR}/git"

LICENSE = "Apache-2.0"
LIC_FILES_CHKSUM = "file://LICENSE;md5=e3fc50a88d0a364313df4b21ef20c29e"

SRC_URI = "git://git@github.com/Intel-BMC/host-misc-comm-manager;protocol=ssh"

SRCREV = "470facc6e94ecbd01ca9c3f0749ae603dffff0e9"

inherit cmake systemd
SYSTEMD_SERVICE:${PN} = "xyz.openbmc_project.Host.Misc.Manager.service"

DEPENDS = "boost sdbusplus phosphor-logging"

repository: Intel-BMC/openbmc

repo_name: Intel-BMC/openbmc

extension: bb


text:
@InProceedings{abernethy13,
  pdf = {http://jmlr.org/proceedings/papers/v28/abernethy13.pdf},
  supplementary = {Supplementary:abernethy13-supp.pdf},
  title = {Large-Scale Bandit Problems and {KWIK} Learning},
  number = {1},
  section = {cycle-1},
  author = {Abernethy, Jacob and Amin, Kareem and Kearns, Michael and Draief, Moez},
  pages = {588-596},
  abstract = {We show that parametric multi-armed bandit (MAB) problems with large state and action spaces can be algorithmically reduced to the supervised learning model known as Knows What It Knows or KWIK learning. We give matching impossibility results showing that the KWIK learnability requirement cannot be replaced by weaker supervised learning assumptions. We provide such results in both the standard parametric MAB setting, as well as for a new model in which the action space is finite but growing with time.},
}

repository: mreid/papersite

repo_name: mreid/papersite


text:
@article{fu2018novel,
  title     = {A novel adamantane-based polyurethane with shape memory effect},
  author    = {Fu, Shuqin and Zhu, Jiaping and Zou, Faxing and Zeng, Xierong and Chen, Shaojun},
  journal   = {Materials Letters},
  volume    = {229},
  pages     = {44--47},
  year      = {2018},
  publisher = {Elsevier}
}


text:
@inproceedings{pascarella_self-reported_2018,
	title = {Self-{Reported} {Activities} of {Android} {Developers}},
	author = {Pascarella, Luca and Geiger, Franz-Xaver and Palomba, Fabio and Di Nucci, Dario and Malavolta, Ivano and Bacchelli, Alberto},
	booktitle = {5th {IEEE}/{ACM} {International} {Conference} on {Mobile} {Software} {Engineering} and {Systems}},
	publisher = {ACM},
	year = {2018},
	month = {May},
	pages = {to appear},
	address = {New York, NY},
    url = {https://androidtimemachine.github.io},
    doi = {https://doi.org/10.1145/3197231.3197251}
}

gha_language: CSS


text:
* {
   margin: 0;
   padding: 0;
   box-sizing: border-box;
}

*:before,
*:after {
   box-sizing: border-box;
}

body {
   font-family: "Montserrat", sans-serif;
}

.wrapper {
   max-width: 1000px;
   margin: 0 auto;
   padding: 1rem;

}

.header {
   background-color: #C20C83;
   padding: 1rem;
   text-align: center;
   border-radius: 0.375rem;
   margin: 1rem auto;
   width: 100%;
   box-shadow: -0.375rem 0.375rem 1rem #0003, 0.375rem 0 1rem #0003;
   position: sticky;
   top: 0;
   z-index: 2;
}

.logo {
   text-transform: capitalize;
   font-size: 2.5rem;
   font-family: "Tourney", cursive;
   color: #f6f6f6;
   position: relative;
   display: inline-block;

}

.logo:before {
   content: "";
   position: absolute;
   left: -6rem;
   top: 0;
   background: url("../images/husky-dp.jpg") no-repeat center/cover;
   width: 5rem;
   height: 5rem;
   border-radius: 50%;
   box-shadow: 0 10px 1rem #0003;
   border: 3px solid #f3f3f3;
}

.site-description {
   margin-top: 0.5rem;
   /* font-style: italic; */
   color: #fff;

}

.posts-container {
   display: flex;
   flex-direction: column;

}

.post {
   margin: 1rem auto;
   background-color: #fcffff;
   border-radius: 0.5rem;
   box-shadow: 0.375rem 0.375rem 1rem #0003;
   padding: 0.5rem;
   width: 100%;
   max-width: 700px;
}

.post__user {
   display: flex;
   /* align-items: center; */
   padding: 1rem;
}

.post__user-image-box {
   width: 4rem;
   height: 4rem;
   border-radius: 50%;
   margin-right: 1rem;
   position: relative;
   box-shadow: 0 0 0 4px #C20C83
}

.post__user-image {
   object-fit: cover;
   height: 100%;
   width: 100%;
   border-radius: inherit
}

.post__user-name {
   font-weight: 500;
   font-size: 1.3rem;
   margin-top: 0.625rem;
   color: #555
}

.post__caption {
   padding: 1rem;
   margin-bottom: 0.625rem;
}

.post__image-box {
   height: 30rem;
   width: 100%;
   border-radius: 0.375rem;
   margin: 1rem 0;
   overflow: hidden;
}

.post__image {
   width: 100%;
   height: 100%;
   object-fit: cover;
   cursor: pointer;
   -webkit-tap-highlight-color: transparent;
}

.post__reactions {
   height: 5rem;
   display: flex;
   justify-content: space-around;
   align-items: center;
   padding: 0.625rem 1rem;
   border-top: 1px solid #0003;
}

.post__reactions-icon {
   text-transform: capitalize;
   font-weight: 400;
   font-size: 1.2rem;
   background: #fff0;
   border: none;
   outline: none;
   cursor: pointer;
   position: relative;
   line-height: 1;
   display: flex;
   justify-content: center;
   align-items: center;
   padding: 0.625rem;
   width: 6rem;
   -webkit-tap-highlight-color: #fff0;
   font-family: inherit;
}

.post__reactions-icon:before {
   margin-right: 0.5rem;
   font-size: 1.5rem;
   color: #C20C83;
}

.like--btn {

   transition: 0.4s ease-in;

}

.comment--btn {
   display: none;
}

.like--btn.fi-sr-heart {
   transform: scale(1.1);
   transition: 0.4s ease-in;
   color: #C20C83
}

.like-message {
   height: 1rem;
   padding: 0 0.5rem;
   margin-bottom: 0.5rem;
   text-transform: capitalize
}

.lightbox-image-wrapper {
   position: fixed;
   width: 100%;
   top: 0;
   left: 0;
   height: 100vh;
   background-color: #000c;
   z-index: -1;
   padding: 2rem 1rem;
   transform: scale(0, 0);
   transform-origin: top;
   transition: 0.5s ease-in-out;
   display: flex;
}

.lightbox-image-wrapper.show {
   z-index: 5;
   transform: scale(1, 1);
   transform-origin: bottom;
   transition: 0.5s ease-in-out;

}

.lightbox-image {
   width: 100%;
   max-width: 500px;
   max-height: 100%;
   margin: auto;
}

.toast {
   position: fixed;
   border-left: 5px solid #C20C83;
   visibility: hidden;
   transition: 0.4s ease-in-out;
   transform: translateY(100%);
   padding: 1.375rem 1rem ;
   background-color: #fff;
   box-shadow: 0 10px 15px #0003;
   border-radius: 0.375rem 0 0 0.375rem ;
   z-index: 3;
   max-width: 90%;
   display: inline-block;
   margin: 0 auto;
   bottom: 0;
}

.toast.showToast {
   visibility: visible;
   transition: 0.4s ease-in-out;
transform: translateY(0);
bottom: 20%;
}

@media all and (max-width:400px) {
   html {
      font-size: 14px;
   }
}