text:
CITATIONS FOR HEAT, MOMENTUM, AND NEUTRAL MASS TRANSPORT

Plasma Medicine citations

@article{Kong2009b,
abstract = {This introductory review on plasma health care is intended to provide the interested reader with a summary of the current status of this emerging field, its scope, and its broad interdisciplinary approach, ranging from plasma physics, chemistry and technology, to microbiology, biochemistry, biophysics, medicine and hygiene. Apart from the basic plasma processes and the restrictions and requirements set by international health standards, the review focuses on plasma interaction with prokaryotic cells (bacteria), eukaryotic cells (mammalian cells), cell membranes,DNAetc. In so doing, some of the unfamiliar terminology—an unavoidable by-product of interdisciplinary research—is covered and explained. Plasma health care may provide a fast and efficient new path for effective hospital (and other public buildings) hygiene— helping to prevent and contain diseases that are continuously gaining ground as resistance of pathogens to antibiotics grows. The delivery of medically active ‘substances’ at the molecular or ionic level is another exciting topic of research through effects on cell walls (permeabilization), cell excitation (paracrine action) and the introduction of reactive species into cell cytoplasm. Electric fields, charging of surfaces, current flows etc can also affect tissue in a controlled way. The field is young and hopes are high. It is fitting to cover the beginnings in New Journal of Physics, since it is the physics (and non- equilibrium chemistry) of room temperature atmospheric pressure plasmas that have made this development of plasma health care possible.},
author = {Kong, M G and Kroesen, G and Morfill, G and Nosenko, T and Shimizu, T and van Dijk, J and Zimmermann, J L},
doi = {10.1088/1367-2630/11/11/115012},
file = {::},
issn = {1367-2630},
journal = {New Journal of Physics},
mendeley-groups = {Plasma Medicine/Reviews,!Publication References/CEA Qual},
month = nov,
number = {11},
pages = {115012},
title = {{Plasma medicine: an introductory review}},
url = {http://stacks.iop.org/1367-2630/11/i=11/a=115012?key=crossref.8ddeab09a282285b85790c23fc50fd57},
volume = {11},
year = {2009}
}
@article{Laroussi2009,
author = {Laroussi, Mounir},
file = {:home/alexlindsay/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Laroussi, Paper - 2009 - Low-Temperature Plasmas for Medicine.pdf:pdf},
journal = {Plasma Science, IEEE Transactions on},
mendeley-groups = {Plasma Medicine/Reviews},
number = {6},
pages = {714--725},
title = {{Low-temperature plasmas for medicine?}},
url = {http://ieeexplore.ieee.org/xpls/abs\_all.jsp?arnumber=4815460},
volume = {37},
year = {2009}
}
@article{Shimizu2014c,
author = {Shimizu, K. and Fukunaga, H. and Blajan, M.},
doi = {10.1016/j.cap.2013.11.055},
file = {::},
issn = {15671739},
journal = {Current Applied Physics},
mendeley-groups = {Plasma Medicine/Reviews},
month = jan,
pages = {1--8},
publisher = {Elsevier B.V},
title = {{Biomedical applications of atmospheric microplasma}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1567173914000170},
year = {2014}
}
@article{VonWoedtke2014a,
author = {von Woedtke, Th. and Metelmann, H.-R. and Weltmann, K.-D.},
doi = {10.1002/ctpp.201310068},
file = {::},
issn = {08631042},
journal = {Contributions to Plasma Physics},
keywords = {applications of plasma to,applications with respect to,besides partially established,bio-,clinical plasma application,cold atmospheric pressure plasma,driven by extensive basic,during the last years,has been developed as,innovative medical research field,microorganisms,on living cells and,plasma medicine,research on plasma effects,sources,to allow effective medical,treat materials or devices},
mendeley-groups = {Plasma Medicine/Reviews,!Publication References/Oxy-Nitroso Burst},
month = feb,
number = {2},
pages = {104--117},
title = {{Clinical Plasma Medicine: State and Perspectives of in Vivo Application of Cold Atmospheric Plasma}},
url = {http://doi.wiley.com/10.1002/ctpp.201310068},
volume = {54},
year = {2014}
}
@article{VonWoedtke2013a,
author = {von Woedtke, Th. and Reuter, S. and Masur, K. and Weltmann, K.-D.},
doi = {10.1016/j.physrep.2013.05.005},
file = {::},
isbn = {3838554310},
issn = {03701573},
journal = {Physics Reports},
mendeley-groups = {Plasma Medicine/Reviews},
month = sep,
number = {4},
pages = {291--320},
publisher = {Elsevier B.V.},
title = {{Plasmas for medicine}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0370157313001634},
volume = {530},
year = {2013}
}

Plasma disinfection of organics

@article{Joubert2013a,
abstract = {Spores are dormant units of bacteria resistant to numerous disinfection methods. Additionally, the effects on bacteria of repetitive electrical discharges in water by used of the so-called "corona discharges" or streamer are poorly described. In this study vegetative and spore forms of Bacillus subtilis var. niger were subjected to these discharges. To generate corona discharges in water, a Marx generator capable of delivering 60-90 kV was used with a coaxial chamber of treatment. Vegetative and spore form reductions were defined using colony-forming unit counting. Proteins extracts were separated by two-dimensional electrophoresis and spots of interest were characterized by mass spectrometry. Shock waves were assessed by the diminution of liposome size and OD(400 nm). The results show a decrease in bacteria viability of 2 log(10) after 1000 discharges on the vegetative form and 4 log(10) after 10,000 discharges on the spores. Two-dimensional electrophoresis showed that the streamers impact the regulation of several proteins in the vegetative forms with UniProt ID: P80861, Q06797, P80244, C0ZI91, respectively. The reduction appears to be due, in part, to hydrogen peroxide (H(2)O(2)) generated by the corona discharges while spore deactivation remained insensitive to these chemicals. The spore eradication was associated to shock waves induced by the discharges but not H(2)O(2). Corona discharges appear as a prospective method for eradication of spores in water. The corona discharges can be an efficient method for decontamination processes of waste water.},
author = {Joubert, Vanessa and Cheype, Cyril and Bonnet, Jean and Packan, Denis and Garnier, Jean-Pierre and Teissi\'{e}, Justin and Blanckaert, Vincent},
doi = {10.1016/j.watres.2012.12.011},
file = {::},
issn = {1879-2448},
journal = {Water research},
keywords = {Bacillus subtilis,Bacillus subtilis: physiology,Electricity,Hydrogen Peroxide,Hydrogen Peroxide: metabolism,Liposomes,Mass Spectrometry,Spores, Bacterial,Spores, Bacterial: physiology,Water},
mendeley-groups = {Plasma Disinfection/In Water},
month = mar,
number = {3},
pages = {1381--9},
pmid = {23286986},
title = {{Inactivation of Bacillus subtilis var. niger of both spore and vegetative forms by means of corona discharges applied in water.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/23286986},
volume = {47},
year = {2013}
}

Plasma disinfection of inorganics

@article{Johnson2006,
abstract = {Experiments have yielded a number of important insights into the energy distribution, sparging and oxidation of methyl tert-butyl ether (MTBE), benzene, ethylbenzene, toluene, m- and p-xylene, and o-xylene (BTEX) in a dense medium plasma reactor (DMPR). It has been found that the DMPR transferred a relatively small amount of electrical energy, approximately 4\% in the form of sensible heat, to the surrounding bulk liquid. Rate constants associated with plasma initiated oxidation, interphase mass transfer and photolysis were determined using a combination of non-linear least squares analysis and Matlab optimization for each species. The rate constants developed for the DMPR, in conjunction with a species mass balance on a prototype tubular high-density plasma reactor, have been applied to determine the removal rates of MTBE and the BTEXs when operating in batch and continuous flow configurations. The dependence of contaminant concentration on parameters such as treatment time, the number of pin electrodes, electrode gap, and volumetric flow rate has been determined. It was found that, under various design specifications and operating conditions, the tubular high-density plasma reactor may be an effective tool for the removal of volatile organic compounds from aqueous solutions.},
author = {Johnson, Derek C and Dandy, David S and Shamamian, Vasgen a},
doi = {10.1016/j.watres.2005.11.015},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Johnson. Dandy. Development of a tubular high density plasma reactor for water treatment.pdf:pdf},
issn = {0043-1354},
journal = {Water research},
keywords = {Carcinogens,Carcinogens: isolation \& purification,Electrochemistry,Electrodes,Equipment Design,Hydrocarbons,Hydrocarbons: isolation \& purification,Methyl Ethers,Methyl Ethers: isolation \& purification,Temperature,Waste Disposal, Fluid,Waste Disposal, Fluid: instrumentation,Waste Disposal, Fluid: methods},
mendeley-groups = {Plasma Disinfection/Of inorganics},
month = jan,
number = {2},
pages = {311--22},
pmid = {16386777},
title = {{Development of a tubular high-density plasma reactor for water treatment.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/16386777},
volume = {40},
year = {2006}
}
@article{Locke2006,
author = {Locke, B. R. and Sato, M. and Sunka, P. and Hoffmann, M. R. and Chang, J.-S.},
doi = {10.1021/ie050981u},
file = {:home/alexlindsay/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Locke et al. - 2006 - Electrohydraulic Discharge and Nonthermal Plasma for Water Treatment.pdf:pdf},
issn = {0888-5885},
journal = {Industrial \& Engineering Chemistry Research},
mendeley-groups = {!Publication References/CEA Qual,Plasma Disinfection/Of inorganics},
month = feb,
number = {3},
pages = {882--905},
title = {{Electrohydraulic Discharge and Nonthermal Plasma for Water Treatment}},
url = {http://pubs.acs.org/doi/abs/10.1021/ie050981u},
volume = {45},
year = {2006}
}
@article{Theron2008,
abstract = {Nanotechnology, the engineering and art of manipulating matter at the nanoscale (1-100 nm), offers the potential of novel nanomaterials for treatment of surface water, groundwater, and wastewater contaminated by toxic metal ions, organic and inorganic solutes, and microorganisms. Due to their unique activity toward recalcitrant contaminants and application flexibility, many nanomaterials are under active research and development. Accordingly, literature about current research on different nanomaterials (nanostructured catalytic membranes, nanosorbents, nanocatalysts, and bioactive nanoparticles) and their application in water treatment, purification and disinfection is reviewed in this article. Moreover, knowledge regarding toxicological effects of engineered nanomaterials on humans and the environment is presented.},
author = {Theron, J and Walker, J a and Cloete, T E},
doi = {10.1080/10408410701710442},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Nanotechnology and water treatment applications and emerging opportunities.pdf:pdf},
issn = {1040-841X},
journal = {Critical reviews in microbiology},
keywords = {Humans,Nanotechnology,Water Purification,Water Purification: methods},
mendeley-groups = {Plasma Disinfection/Of inorganics},
month = jan,
number = {1},
pages = {43--69},
pmid = {18259980},
title = {{Nanotechnology and water treatment: applications and emerging opportunities.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/18259980},
volume = {34},
year = {2008}
}

Agricultural applications

@article{Park2013b,
author = {Park, Dayonna P. and Davis, Kevin and Gilani, Samid and Alonzo, Christal-Anne and Dobrynin, Danil and Friedman, Gary and Fridman, Alexander and Rabinovich, Alexander and Fridman, Gregory},
doi = {10.1016/j.cap.2012.12.019},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Fridman. Reactive nitrogen species produced in water by non-equilibrium plasma increase plant growth rate and nutritional yield.pdf:pdf},
issn = {15671739},
journal = {Current Applied Physics},
keywords = {atmospheric pressure plasma,plasma treatment of water},
mendeley-groups = {Plasma Chemistry/Nitrogen Fixation,Plasma Agriculture},
month = mar,
pages = {S19--S29},
publisher = {Elsevier B.V},
title = {{Reactive nitrogen species produced in water by non-equilibrium plasma increase plant growth rate and nutritional yield}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1567173913000084},
volume = {13},
year = {2013}
}
@article{Lindsay2014,
author = {Lindsay, Alex and Byrns, Brandon and King, Wesley and Andhvarapou, Asish and Fields, Jeb and Knappe, Detlef and Fonteno, William and Shannon, Steven},
doi = {10.1007/s11090-014-9573-x},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Alex journal article.pdf:pdf},
isbn = {1109001495},
issn = {0272-4324},
journal = {Plasma Chemistry and Plasma Processing},
mendeley-groups = {Plasma Agriculture},
month = aug,
number = {6},
pages = {1271--1290},
title = {{Fertilization of Radishes, Tomatoes, and Marigolds Using a Large-Volume Atmospheric Glow Discharge}},
url = {http://link.springer.com/10.1007/s11090-014-9573-x},
volume = {34},
year = {2014}
}

Experimental basic science papers

@article{Lukes2014b,
author = {Lukes, P and Dolezalova, E and Sisrova, I and Clupek, M},
doi = {10.1088/0963-0252/23/1/015019},
file = {::},
issn = {0963-0252},
journal = {Plasma Sources Science and Technology},
mendeley-groups = {!Publication References/CEA Qual},
month = feb,
number = {1},
pages = {015019},
title = {{Aqueous-phase chemistry and bactericidal effects from an air discharge plasma in contact with water: evidence for the formation of peroxynitrite through a pseudo-second-order post-discharge reaction of H 2 O 2 and HNO 2}},
url = {http://stacks.iop.org/0963-0252/23/i=1/a=015019?key=crossref.61bac2f0f37d7229407420317d3060ec},
volume = {23},
year = {2014}
}
@article{Bruggeman2009d,
author = {Bruggeman, Peter and Schram, Daan and Gonz\'{a}lez, Manuel \'{A} and Rego, Robby and Kong, Michael G and Leys, Christophe},
doi = {10.1088/0963-0252/18/2/025017},
file = {:home/alexlindsay/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Bruggeman et al. - 2009 - Characterization of a direct dc-excited discharge in water by optical emission spectroscopy.pdf:pdf},
issn = {0963-0252},
journal = {Plasma Sources Science and Technology},
mendeley-groups = {Plasma Diagnostics/Gas phase/Spectroscopy},
month = may,
number = {2},
pages = {025017},
title = {{Characterization of a direct dc-excited discharge in water by optical emission spectroscopy}},
url = {http://stacks.iop.org/0963-0252/18/i=2/a=025017?key=crossref.c285f255ff5878d65a811974193067d2},
volume = {18},
year = {2009}
}
@article{bruggeman2008dc,
  title={Dc excited glow discharges in atmospheric pressure air in pin-to-water electrode systems},
  author={Bruggeman, Peter and Liu, Jingjing and Degroote, Joris and Kong, Michael G and Vierendeels, Jan and Leys, Christophe},
  journal={Journal of Physics D: Applied Physics},
  volume={41},
  number={21},
  pages={215201},
  year={2008},
  publisher={IOP Publishing}
}

@article{Pavlovich2013g,
author = {Pavlovich, Matthew J and Chang, Hung-Wen and Sakiyama, Yukinori and Clark, Douglas S and Graves, David B},
doi = {10.1088/0022-3727/46/14/145202},
file = {::},
issn = {0022-3727},
journal = {Journal of Physics D: Applied Physics},
mendeley-groups = {To Sort/Ozone,To Sort/Plasma Biology/Disinfection/Plasma-Activated Water,!GravesLab Publications,!Publication References/CEA Qual},
month = apr,
number = {14},
pages = {145202},
title = {{Ozone correlates with antibacterial effects from indirect air dielectric barrier discharge treatment of water}},
url = {http://stacks.iop.org/0022-3727/46/i=14/a=145202?key=crossref.5c41b0afd0d383ac31653724608f20e6},
volume = {46},
year = {2013}
}
@article{Traylor2011h,
abstract = {Indirect air dielectric barrier discharge in close proximity to water creates an acidified, nitrogen-oxide containing solution known as plasma-activated water (PAW), which remains antibacterial for several days. Suspensions of E. coli were exposed to PAWfor either 15 min or 3 h over a 7-day period after PAWgeneration. Both exposure times yielded initial antibacterial activity corresponding to a ∼5-log reduction in cell viability, which decreased at differing rates over 7 days to negligible activity and a 2.4-log reduction for 15 min and 3 h exposures, respectively. The solution remained at pH ∼2.7 for this period and initially included hydrogen peroxide, nitrate and nitrite anions. The solution composition varied significantly over this time, with hydrogen peroxide and nitrite diminishing within a few days, during which the antibacterial efficacy of 15 min exposures decreased significantly, while that of 3 h exposures produced a 5-log reduction or more. These results highlight the complexity of PAWsolutions where multiple chemical components exert varying biological effects on differing time scales.},
author = {Traylor, Matthew J and Pavlovich, Matthew J and Karim, Sharmin and Hait, Pritha and Sakiyama, Yukinori and Clark, Douglas S and Graves, David B},
doi = {10.1088/0022-3727/44/47/472001},
file = {::},
issn = {0022-3727},
journal = {Journal of Physics D: Applied Physics},
mendeley-groups = {Plasma Chemistry/Activated Water,!Publication References/CEA Qual},
month = nov,
number = {47},
pages = {472001},
title = {{Long-term antibacterial efficacy of air plasma-activated water}},
url = {http://stacks.iop.org/0022-3727/44/i=47/a=472001?key=crossref.1cad1a53620b5f0dc146aa1995e26350},
volume = {44},
year = {2011}
}

Modeling basic science papers

@article{Babaeva2014b,
author = {Babaeva, Natalia Yu and Tian, Wei and Kushner, Mark J},
doi = {10.1088/0022-3727/47/23/235201},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Kushner. Babaeva. Interaction between plasma filaments in DBD and liquid covered wounds, electric fields delivered to model platelets and cells.pdf:pdf},
issn = {0022-3727},
journal = {Journal of Physics D: Applied Physics},
keywords = {blood,dielectric barrier discharge,electroporation,in colour only in,plasma medicine,some figures may appear,the online journal,wound},
mendeley-groups = {Plasma Chemistry/Activated Water},
month = jun,
number = {23},
pages = {235201},
title = {{The interaction between plasma filaments in dielectric barrier discharges and liquid covered wounds: electric fields delivered to model platelets and cells}},
url = {http://stacks.iop.org/0022-3727/47/i=23/a=235201?key=crossref.bb30f850759a682a4802df2e53c57dba},
volume = {47},
year = {2014}
}
@article{Tian2014,
author = {Tian, Wei and Kushner, Mark J},
doi = {10.1088/0022-3727/47/16/165201},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Kushner. Tian. Atmospheric pressure DBD interacting with liquid covered tissue.pdf:pdf},
issn = {0022-3727},
journal = {Journal of Physics D: Applied Physics},
keywords = {atmospheric pressure plasma,dielectric barrier discharge,plasmas on liquids},
mendeley-groups = {Plasma Chemistry/Activated Water},
month = apr,
number = {16},
pages = {165201},
title = {{Atmospheric pressure dielectric barrier discharges interacting with liquid covered tissue}},
url = {http://stacks.iop.org/0022-3727/47/i=16/a=165201?key=crossref.250e8427ca5ee3325570f3ca001c6687},
volume = {47},
year = {2014}
}
@article{Chen2014a,
author = {Chen, C. and Liu, D. X. and Liu, Z. C. and Yang, a. J. and Chen, H. L. and Shama, G. and Kong, M. G.},
journal = {Plasma Chemistry and Plasma Processing},
doi = {10.1007/s11090-014-9545-1},
file = {:home/alexlindsay/owncloudclient/owncloudclient/Literature/Kong plasma\_biofilm.pdf:pdf},
isbn = {1109001495},
issn = {0272-4324},
mendeley-groups = {Plasma Chemistry/Activated Water},
month = apr,
number = {3},
pages = {403--441},
title = {{A Model of Plasma-Biofilm and Plasma-Tissue Interactions at Ambient Pressure}},
url = {http://link.springer.com/10.1007/s11090-014-9545-1},
volume = {34},
year = {2014}
}

Biochemistry literature

@article{Bachi2013,
author = {Bachi, Angela and Dalle-Donne, Isabella and Scaloni, Andrea},
doi = {10.1021/cr300073p},
file = {::},
issn = {1520-6890},
journal = {Chemical reviews},
keywords = {Models,Molecular,Oxidation-Reduction,Proteins,Proteins: analysis,Proteins: metabolism,Proteomics,Reactive Nitrogen Species,Reactive Nitrogen Species: metabolism,Reactive Oxygen Species,Reactive Oxygen Species: metabolism},
month = jan,
number = {1},
pages = {596--698},
pmid = {23181411},
title = {{Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/23181411},
volume = {113},
year = {2013}
}
@book {Halliwell,
title = {Free Radicals in Biochemistry and Medicine},
author = {Halliwell, Barry},
author = {},
publisher = {Wiley-VCH Verlag GmbH \& Co. KGaA},
isbn = {9783527600908},
url = {http://dx.doi.org/10.1002/3527600906.mcb.200300036},
doi = {10.1002/3527600906.mcb.200300036},
keywords = {Antioxidant, Free Radical, Oxidative Damage, Oxidative Stress, Polyunsaturated Fatty Acid, Reactive Oxygen Species, Reactive Nitrogen Species},
booktitle = {Encyclopedia of Molecular Cell Biology and Molecular Medicine},
year = {2006},
}

Graves review

@article{Graves2014review,
  title={Oxy-nitroso shielding burst model of cold atmospheric plasma therapeutics},
  author={Graves, David B},
  journal={Clinical Plasma Medicine},
  year={2014},
  publisher={Elsevier}
}

Zhao streamer modeling

@article{Zhao2005a,
abstract = {The electrohydrodynamic ﬂow in air produced by the electric corona discharge in the pin–plate and pin–grid conﬁgurations has been investigated numerically and experimentally in this paper. The numerical algorithm based on the boundary and ﬁnite element methods and the method of characteristics is employed to obtain the distributions of the electric ﬁeld, the electric potential and the space charge density. After the volume force has been calculated, the commercial FLUENT software is used to solve the airﬂow. Experimental axial velocity proﬁles outside the ground grid obtained with a hot-wire anemometer reasonably validate the simulation results.},
author = {Zhao, L. and Adamiak, K.},
doi = {10.1016/j.elstat.2004.06.003},
file = {:home/alexlindsay/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Zhao, Adamiak - 2005 - EHD flow in air produced by electric corona discharge in pin–plate configuration.pdf:pdf},
issn = {03043886},
journal = {Journal of Electrostatics},
keywords = {corona discharge,ehd flow,electric field,ionic wind,numerical simulation},
mendeley-groups = {!Publication References/CEA Qual},
mendeley-tags = {corona discharge,ehd flow,electric field,ionic wind,numerical simulation},
month = mar,
number = {3-4},
pages = {337--350},
title = {{EHD flow in air produced by electric corona discharge in pin–plate configuration}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0304388604001330},
volume = {63},
year = {2005}
}

Bird textbook

@book{bird2007transport,
  title={Transport phenomena},
  author={Bird, R Byron and Stewart, Warren E and Lightfoot, Edwin N},
  year={2007},
  publisher={John Wiley \& Sons}
}

Diffuison coefficients

@article{Sakiyama2012b,
abstract = {We present a numerical model of a surface microdischarge (SMD) in humid air at atmospheric pressure. Our model includes over 50 species and 600 elementary reactions and consists of two, coupled well-mixed regions: a discharge layer with both charged and neutral species and an afterglow region consisting only of neutral species. Multiple time steps employed in our model enable capturing rapid dynamic behaviour in the discharge layer as well as the relatively slow diffusion and reaction in the afterglow. A short duration, high electric field is assumed to be excited at 10 kHz in the discharge region with power density maintained at 0.05Wcm−2. Among the predicted dominant species in the afterglow are O3,N2O5,N2O, HNO3,H2,NO3, H2O2, HNO2 and NO2. The results are in qualitative agreement with Fourier transform infrared absorption spectroscopy. Our simulation results show that density of those reactive species continues to evolve significantly in time, even after ∼15 min of SMD exposure. This result suggests that SMD treatments on the order of minutes or less may involve significant neutral species concentration and flux transients, potentially affecting interpretation of results.},
author = {Sakiyama, Yukinori and Graves, David B and Chang, Hung-Wen and Shimizu, Tetsuji and Morfill, Gregor E},
doi = {10.1088/0022-3727/45/42/425201},
file = {:home/alexlindsay/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Sakiyama et al. - 2012 - Plasma chemistry model of surface microdischarge in humid air and dynamics of reactive neutral species.pdf:pdf},
issn = {0022-3727},
journal = {Journal of Physics D: Applied Physics},
mendeley-groups = {!GravesLab Publications,!Publication References/CEA Qual},
month = oct,
number = {42},
pages = {425201},
title = {{Plasma chemistry model of surface microdischarge in humid air and dynamics of reactive neutral species}},
url = {http://stacks.iop.org/0022-3727/45/i=42/a=425201?key=crossref.90985ce667d76f99042802d6ce1ae334},
volume = {45},
year = {2012}
}
@article{mcmurtrie1948measurement,
  title={A measurement of the diffusion coefficient of hydrogen peroxide vapor into air},
  author={McMurtrie, RL and Keyes, FG},
  journal={Journal of the American Chemical Society},
  volume={70},
  number={11},
  pages={3755--3758},
  year={1948},
  publisher={ACS Publications}
}
@article{zacharia2005diffusivity,
  title={Diffusivity and solubility of nitric oxide in water and saline},
  author={Zacharia, Ian G and Deen, William M},
  journal={Annals of biomedical engineering},
  volume={33},
  number={2},
  pages={214--222},
  year={2005},
  publisher={Springer}
}
@article{wills1971diffusion,
  title={Diffusion coefficient of aqueous nitric acid at 25. deg. as function of concentration from 0.1 to 1.0 M},
  author={Wills, George B and Yeh, Hsi-Sheng},
  journal={Journal of Chemical \& Engineering Data},
  volume={16},
  number={1},
  pages={76--77},
  year={1971},
  publisher={ACS Publications}
}
@article{kreft2001individual,
  title={Individual-based modelling of biofilms},
  author={Kreft, Jan-Ulrich and Picioreanu, Cristian and Wimpenny, Julian WT and van Loosdrecht, Mark CM},
  journal={Microbiology},
  volume={147},
  number={11},
  pages={2897--2912},
  year={2001},
  publisher={Soc General Microbiol}
}
@article{agmon1995grotthuss,
  title={The grotthuss mechanism},
  author={Agmon, Noam},
  journal={Chemical Physics Letters},
  volume={244},
  number={5},
  pages={456--462},
  year={1995},
  publisher={Elsevier}
}

Reaction rate coefficients

@article{wayne1951kinetics,
  title={Kinetics of the rapid gas phase reaction between NO, NO2, and H2O},
  author={Wayne, Lowell G and Yost, Don M},
  journal={The Journal of Chemical Physics},
  volume={19},
  number={1},
  pages={41--47},
  year={1951},
  publisher={AIP Publishing}
}
@article{johnaelliot1990estimation,
  title={Estimation of rate constants for near-diffusion-controlled reactions in water at high temperatures},
  author={John{\'a}Elliot, A and others},
  journal={Journal of the Chemical Society, Faraday Transactions},
  volume={86},
  number={9},
  pages={1539--1547},
  year={1990},
  publisher={Royal Society of Chemistry}
}

@misc{NIST_kin,
  title = {NIST Chemical Kinetics Database},
  howpublished = {\url{http://kinetics.nist.gov/kinetics/}}
}
@article{lefers1982absorption,
  title={Absorption of NO2 and N2O4 into diluted and concentrated nitric acid},
  author={Lefers, JB and Van den Berg, PJ},
  journal={The Chemical Engineering Journal},
  volume={23},
  number={2},
  pages={211--221},
  year={1982},
  publisher={Elsevier}
}
@article{park1988solubility,
  title={Solubility and decomposition kinetics of nitrous acid in aqueous solution},
  author={Park, Jong Yoon and Lee, Yin Nan},
  journal={The Journal of Physical Chemistry},
  volume={92},
  number={22},
  pages={6294--6302},
  year={1988},
  publisher={ACS Publications}
}
@article{coddington1999hydroxyl,
  title={Hydroxyl radical formation during peroxynitrous acid decomposition},
  author={Coddington, John W and Hurst, James K and Lymar, Sergei V},
  journal={Journal of the American Chemical Society},
  volume={121},
  number={11},
  pages={2438--2443},
  year={1999},
  publisher={ACS Publications}
}
@article{goldstein2005chemistry,
  title={Chemistry of peroxynitrites as compared to peroxynitrates},
  author={Goldstein, Sara and Lind, Johan and Mer{\'e}nyi, G{\'a}bor},
  journal={Chemical reviews},
  volume={105},
  number={6},
  pages={2457--2470},
  year={2005},
  publisher={ACS Publications}
}
@article{janik2007hydroxyl,
  title={Hydroxyl radical self-recombination reaction and absorption spectrum in water up to 350 C},
  author={Janik, Ireneusz and Bartels, David M and Jonah, Charles D},
  journal={The Journal of Physical Chemistry A},
  volume={111},
  number={10},
  pages={1835--1843},
  year={2007},
  publisher={ACS Publications}
}
@phdthesis{dorai2002modeling,
  title={Modeling of atmospheric pressure plasma processing of gases and surfaces},
  author={Dorai, Rajesh},
  year={2002},
  school={University of Illinois at Urbana-Champaign}
}

Experimental concentration measurements

@inproceedings{ono1998measurement,
  title={Measurement of hydroxyl radicals in an atmospheric pressure discharge plasma by using laser-induced fluorescence},
  author={Ono, Ryo and Oda, Tetsuji},
  booktitle={Industry Applications Conference, 1998. Thirty-Third IAS Annual Meeting. The 1998 IEEE},
  volume={3},
  pages={1777--1783},
  year={1998},
  organization={IEEE}
}
@article{niemi2005absolute,
  title={Absolute atomic oxygen density measurements by two-photon absorption laser-induced fluorescence spectroscopy in an RF-excited atmospheric pressure plasma jet},
  author={Niemi, K and Schulz-Von Der Gathen, V and D{\"o}bele, HF},
  journal={Plasma Sources Science and Technology},
  volume={14},
  number={2},
  pages={375},
  year={2005},
  publisher={IOP Publishing}
}
@article{ono2001oh,
  title={OH radical measurement in a pulsed arc discharge plasma observed by a LIF method},
  author={Ono, Ryo and Oda, Tetsuji},
  journal={Industry Applications, IEEE Transactions on},
  volume={37},
  number={3},
  pages={709--714},
  year={2001},
  publisher={IEEE}
}
@article{nakagawa2011density,
  title={Density and temperature measurement of OH radicals in atmospheric-pressure pulsed corona discharge in humid air},
  author={Nakagawa, Yusuke and Ono, Ryo and Oda, Tetsuji},
  journal={Journal of Applied Physics},
  volume={110},
  number={7},
  pages={073304},
  year={2011},
  publisher={AIP Publishing}
}
@article{verreycken2012time,
  title={Time and spatially resolved LIF of OH in a plasma filament in atmospheric pressure He--H2O},
  author={Verreycken, T and Van der Horst, RM and Baede, AHFM and Van Veldhuizen, EM and Bruggeman, PJ},
  journal={Journal of Physics D: Applied Physics},
  volume={45},
  number={4},
  pages={045205},
  year={2012},
  publisher={IOP Publishing}
}
@article{kanazawa2003two,
  title={Two-dimensional imaging of NO density profiles by LIF technique in a pipe with nozzles electrode during NO treatment},
  author={Kanazawa, Seiji and Shuto, Yasuyuki and Sato, Naruaki and Ohkubo, Toshikazu and Nomoto, Yukiharu and Mizeraczyk, Jerzy and Chang, Jen-Shih},
  journal={Industry Applications, IEEE Transactions on},
  volume={39},
  number={2},
  pages={333--339},
  year={2003},
  publisher={IEEE}
}

Antoine's original work
@article{antoine1888thermodynamic,
  title={Thermodynamic vapor pressures: New relation between the pressures and the temperatures (Thermodynamique, Tensions des Vapeurs: Novelle Relation entre les Tensions et les Temperatures)},
  author={Antoine, C},
  journal={CR Hebd. Seances Acad. Sci},
  volume={107},
  number={681},
  pages={836},
  year={1888}
}

Importance of humidity in plasma chemistry

@article{winter2013feed,
  title={Feed gas humidity: a vital parameter affecting a cold atmospheric-pressure plasma jet and plasma-treated human skin cells},
  author={Winter, J and Wende, K and Masur, K and Iseni, S and D{\"u}nnbier, M and Hammer, MU and Tresp, H and Weltmann, KD and Reuter, S},
  journal={Journal of Physics D: Applied Physics},
  volume={46},
  number={29},
  pages={295401},
  year={2013},
  publisher={IOP Publishing}
}

Lumped mass transfer resistances

@book{carberry2001chemical,
  title={Chemical and catalytic reaction engineering},
  author={Carberry, James J},
  year={2001},
  publisher={Courier Dover Publications}
}

Chapman-Enskog equation

@book{cussler2009diffusion,
  title={Diffusion: mass transfer in fluid systems},
  author={Cussler, Edward Lansing},
  year={2009},
  publisher={Cambridge university press}
}

Antoine equation constants

@book{dimian2014integrated,
  title={Integrated design and simulation of chemical processes},
  author={Dimian, Alexandre C and Bildea, Costin S and Kiss, Anton A},
  volume={35},
  year={2014},
  publisher={Elsevier}
}

Comsol model location

@misc{modelLocation,
  howpublished = {\url{http://www.graveslab.org/about/personnel/profile-alex-lindsay}}
}

Python scripts location

@misc{scriptsLocation,
  howpublished = {\url{https://github.com/lindsayad/pythonScripts}}
}

Missing diffusion coefficient citations:

@article{skinn2013nitrogen,
  title={A nitrogen dioxide delivery system for biological media},
  author={Skinn, Brian T and Deen, William M},
  journal={Free Radical Biology and Medicine},
  volume={56},
  pages={44--53},
  year={2013},
  publisher={Elsevier}
}
@article{khalack2005solvation,
  title={Solvation structure of hydroxyl radical by Car-Parrinello molecular dynamics},
  author={Khalack, Julia M and Lyubartsev, Alexander P},
  journal={The Journal of Physical Chemistry A},
  volume={109},
  number={2},
  pages={378--386},
  year={2005},
  publisher={ACS Publications}
}
@article{kitamura1994microchemistry,
  title={Microchemistry: Spectroscopy and Chemistry in Small Domains},
  author={Kitamura, N and Sasaki, K and Misawa, H and Masuhara, H and Masuhara, H},
  journal={Elsevier Science, Amsterdam},
  year={1994}
}

Humidity vs flow rate

@article{yagi2015two,
  title={Two-dimensional LIF measurements of humidity and OH density resulting from evaporated water from a wet surface in plasma for medical use},
  author={Yagi, Ippei and Ono, Ryo and Oda, Tetsuji and Takaki, Koichi},
  journal={Plasma Sources Science and Technology},
  volume={24},
  number={1},
  pages={015002},
  year={2015},
  publisher={IOP Publishing}
}

Reviews

@article{locke2011review,
  title={Review of the methods to form hydrogen peroxide in electrical discharge plasma with liquid water},
  author={Locke, Bruce R and Shih, Kai-Yuan},
  journal={Plasma Sources Science and Technology},
  volume={20},
  number={3},
  pages={034006},
  year={2011},
  publisher={IOP Publishing}
}
@article{bruggeman2009non,
  title={Non-thermal plasmas in and in contact with liquids},
  author={Bruggeman, Peter and Leys, Christophe},
  journal={Journal of Physics D: Applied Physics},
  volume={42},
  number={5},
  pages={053001},
  year={2009},
  publisher={IOP Publishing}
}

Deen transport book

@book{deen1998analysis,
  title={Analysis of Transport Phenomena (Topics in Chemical Engineering)},
  author={Deen, William M},
  volume={3},
  year={1998},
  publisher={Oxford University Press, New York}
}

CITATIONS FOR ZAPDOS COUPLED PLASMA LIQUID PAPER

argon mobility and diffusivity paper

@article{richards1987continuum,
  title={Continuum modeling of argon radio frequency glow discharges},
  author={Richards, Albert D and Thompson, Brian E and Sawin, Herbert H},
  journal={Applied physics letters},
  volume={50},
  number={9},
  pages={492--494},
  year={1987},
  publisher={AIP Publishing}
}

Local field coefficients Morrow

@article{morrow1997streamer,
  title={Streamer propagation in air},
  author={Morrow, R and Lowke, JJ},
  journal={Journal of Physics D: Applied Physics},
  volume={30},
  number={4},
  pages={614},
  year={1997},
  publisher={IOP Publishing}
}

Comsol web-site
@misc{comsolSite,
  howpublished = {\url{https://www.comsol.com/}}
}

Bolos web-site
@misc{bolosSite,
  howpublished = {\url{https://github.com/aluque/bolos}}
}

Hagelaar BCs
@article{hagelaar2000boundary,
  title={Boundary conditions in fluid models of gas discharges},
  author={Hagelaar, GJM and De Hoog, FJ and Kroesen, GMW},
  journal={Physical Review E},
  volume={62},
  number={1},
  pages={1452--1454},
  year={2000}
}

Yuki LFA and EEE compare. Plus BC help
@article{sakiyama2007nonthermal,
  title={Nonthermal atmospheric rf plasma in one-dimensional spherical coordinates: Asymmetric sheath structure and the discharge mechanism},
  author={Sakiyama, Yukinori and Graves, David B},
  journal={Journal of applied physics},
  volume={101},
  number={7},
  pages={073306},
  year={2007},
  publisher={AIP Publishing}
}

LXCat
@misc{lxcat,
  howpublished = {\url{http://fr.lxcat.net/home/}}
}

Bolsig paper
@article{hagelaar2005solving,
  title={Solving the Boltzmann equation to obtain electron transport coefficients and rate coefficients for fluid models},
  author={Hagelaar, GJM and Pitchford, LC},
  journal={Plasma Sources Science and Technology},
  volume={14},
  number={4},
  pages={722},
  year={2005},
  publisher={IOP Publishing}
}

JKLee DC discharge papers
@article{hong2008modeling,
  title={Modeling High-Pressure Microplasmas: Comparison of Fluid Modeling and Particle-in-Cell Monte Carlo Collision Modeling},
  author={Hong, Yong Jun and Lee, Seung Min and Kim, Gyoo Cheon and Lee, Jae Koo},
  journal={Plasma Processes and Polymers},
  volume={5},
  number={6},
  pages={583--592},
  year={2008},
  publisher={Wiley Online Library}
}
@article{choi2007electron,
  title={Electron and ion kinetics in a dc microplasma at atmospheric pressure},
  author={Choi, Jun and Iza, Felipe and Lee, Jae Koo and Ryu, Chang-Mo},
  journal={Plasma Science, IEEE Transactions on},
  volume={35},
  number={5},
  pages={1274--1278},
  year={2007},
  publisher={IEEE}
}

Phelps database
@article{yamabe1983measurement,
  title={Measurement of free-free emission from low-energy-electron collisions with Ar},
  author={Yamabe, C and Buckman, SJ and Phelps, AV},
  journal={Physical Review A},
  volume={27},
  number={3},
  pages={1345},
  year={1983},
  publisher={APS}
}

Moose
@misc{mooseSite,
  howpublished = {\url{mooseframework.org}}
}

libmesh
@misc{libmeshSite,
  howpublished = {\url{http://libmesh.github.io/}}
}

petsc
@misc{petscSite,
  howpublished = {\url{http://www.mcs.anl.gov/petsc/}}
}

JFNK review article
@article{knoll2004jacobian,
  title={Jacobian-free Newton--Krylov methods: a survey of approaches and applications},
  author={Knoll, Dana A and Keyes, David E},
  journal={Journal of Computational Physics},
  volume={193},
  number={2},
  pages={357--397},
  year={2004},
  publisher={Elsevier}
}

Dennis numerical methods text
@book{dennis1996numerical,
  title={Numerical methods for unconstrained optimization and nonlinear equations},
  author={Dennis Jr, John E and Schnabel, Robert B},
  volume={16},
  year={1996},
  publisher={Siam}
}

hagelaar DC PIC comparison
@article{hagelaar2000monte,
  title={A Monte Carlo modelling study of the electrons in the microdischarges in plasma addressed liquid crystal displays},
  author={Hagelaar, GJM and Kroesen, GMW},
  journal={Plasma Sources Science and Technology},
  volume={9},
  number={4},
  pages={605},
  year={2000},
  publisher={IOP Publishing}
}

zapdos site
@misc{zapdosSite,
  howpublished = {\url{https://github.com/lindsayad/zapdos}}
}

FERTIGATION PAPER

@article{kogelschatz2004atmospheric,
  title={Atmospheric-pressure plasma technology},
  author={Kogelschatz, Ulrich},
  journal={Plasma Physics and Controlled Fusion},
  volume={46},
  number={12B},
  pages={B63},
  year={2004},
  publisher={IOP Publishing}
}

@article{bakken1994high,
  title={High temperature processing and numerical modelling of thermal plasmas in Norway},
  author={Bakken, JA},
  journal={Pure and applied chemistry},
  volume={66},
  number={6},
  pages={1239--1246},
  year={1994}
}

@article{lelievre1995electrolysis,
  title={Electrolysis processes in DC corona discharges in humid air},
  author={Leli{\`e}vre, J and Dubreuil, N and Brisset, J-L},
  journal={Journal de Physique III},
  volume={5},
  number={4},
  pages={447--457},
  year={1995},
  publisher={EDP Sciences}
}

@article{locke2006electrohydraulic,
  title={Electrohydraulic discharge and nonthermal plasma for water treatment},
  author={Locke, BR and Sato, M and Sunka, P and Hoffmann, MR and Chang, J-S},
  journal={Industrial \& engineering chemistry research},
  volume={45},
  number={3},
  pages={882--905},
  year={2006},
  publisher={ACS Publications}
}

@article{traylor2011long,
  title={Long-term antibacterial efficacy of air plasma-activated water},
  author={Traylor, Matthew J and Pavlovich, Matthew J and Karim, Sharmin and Hait, Pritha and Sakiyama, Yukinori and Clark, Douglas S and Graves, David B},
  journal={Journal of Physics D: Applied Physics},
  volume={44},
  number={47},
  pages={472001},
  year={2011},
  publisher={IOP Publishing}
}

@article{byrns2012vhf,
  title={A VHF driven coaxial atmospheric air plasma: electrical and optical characterization},
  author={Byrns, Brandon and Wooten, Daniel and Lindsay, Alexander and Shannon, Steven},
  journal={Journal of Physics D: Applied Physics},
  volume={45},
  number={19},
  pages={195204},
  year={2012},
  publisher={IOP Publishing}
}

@inproceedings{vsera2012various,
  title={How various plasma sources may affect seed germination and growth},
  author={{\v{S}}er{\'a}, Bo{\v{z}}ena and Gajdov{\'a}, Iveta and {\v{C}}ern{\'a}k, Mirko and Gavril, Bogdan and Hnatiuc, Eugen and Kov{\'a}{\v{c}}ik, Du{\v{s}}an and K{\v{r}}{\'\i}ha, V{\'\i}t{\v{e}}zslav and Sl{\'a}ma, Jan and {\v{S}}er{\`y}, Michal and {\v{S}}patenka, Petr},
  booktitle={Optimization of Electrical and Electronic Equipment (OPTIM), 2012 13th International Conference on},
  pages={1365--1370},
  year={2012},
  organization={IEEE}
}

@article{bormashenko2012cold,
  title={Cold radiofrequency plasma treatment modifies wettability and germination speed of plant seeds},
  author={Bormashenko, Edward and Grynyov, Roman and Bormashenko, Yelena and Drori, Elyashiv},
  journal={Scientific reports},
  volume={2},
  year={2012},
  publisher={Nature Publishing Group}
}

@article{zhou2011introduction,
  title={Introduction of a new atmospheric pressure plasma device and application on tomato seeds*},
  author={Zhou, Zhuwen and Huang, Yanfen and Yang, Size and Chen, Wei},
  journal={Agricultural Sciences},
  volume={2},
  number={1},
  pages={23},
  year={2011},
  publisher={Scientific Research Publishing}
}

@article{huang2010effect,
  title={Effect of radio frequency discharge plasma on wheat’s seed germination and seedling growth},
  author={Huang, Ming-jing and Yin, Mei-qiang},
  journal={Journal of Shanxi Agricultural University (Natural Science Edition)},
  volume={5},
  pages={006},
  year={2010}
}

@incollection{filatova2012fungicidal,
  title={Fungicidal effects of plasma and radio-wave pre-treatments on seeds of grain crops and legumes},
  author={Filatova, Irina and Azharonok, Viktor and Shik, Alexander and Antoniuk, Alexandra and Terletskaya, Natalia},
  booktitle={Plasma for Bio-Decontamination, Medicine and Food Security},
  pages={469--479},
  year={2012},
  publisher={Springer}
}

@inproceedings{takaki2013improvements,
  title={Improvements in plant growth rate using underwater discharge},
  author={Takaki, K and Takahata, J and Watanabe, S and Satta, N and Yamada, O and Fujio, T and Sasaki, Y},
  booktitle={Journal of Physics: Conference Series},
  volume={418},
  number={1},
  pages={012140},
  year={2013},
  organization={IOP Publishing}
}

@article{park2013reactive,
  title={Reactive nitrogen species produced in water by non-equilibrium plasma increase plant growth rate and nutritional yield},
  author={Park, Dayonna P and Davis, Kevin and Gilani, Samid and Alonzo, Christal-Anne and Dobrynin, Danil and Friedman, Gary and Fridman, Alexander and Rabinovich, Alexander and Fridman, Gregory},
  journal={Current Applied Physics},
  volume={13},
  pages={S19--S29},
  year={2013},
  publisher={Elsevier}
}

@article{moussa2005acidity,
  title={Acidity control of the gliding arc treatments of aqueous solutions: application to pollutant abatement and biodecontamination},
  author={Moussa, D and Abdelmalek, F and Benstaali, B and Addou, A and Hnatiuc, E and Brisset, J-L},
  journal={The European Physical Journal Applied Physics},
  volume={29},
  number={02},
  pages={189--199},
  year={2005},
  publisher={Cambridge Univ Press}
}

@article{brisset2012peroxynitrite,
  title={Peroxynitrite: a re-examination of the chemical properties of non-thermal discharges burning in air over aqueous solutions},
  author={Brisset, Jean-Louis and Hnatiuc, Eugen},
  journal={Plasma Chemistry and Plasma Processing},
  volume={32},
  number={4},
  pages={655--674},
  year={2012},
  publisher={Springer}
}

@book{benjamin2014water,
  title={Water chemistry},
  author={Benjamin, Mark M},
  year={2014},
  publisher={Waveland Press}
}

@article{greenwood1984chemistry,
  title={Chemistry of the Elements},
  author={Greenwood, Norman Neill and Earnshaw, Alan},
  year={1984}
}

@article{burlica2010bacteria,
  title={Bacteria inactivation using low power pulsed gliding arc discharges with water spray},
  author={Burlica, R and Grim, RG and Shih, K-Y and Balkwill, D and Locke, BR},
  journal={Plasma Processes and Polymers},
  volume={7},
  number={8},
  pages={640--649},
  year={2010},
  publisher={Wiley Online Library}
}

@book{lieberman2005principles,
  title={Principles of plasma discharges and materials processing},
  author={Lieberman, Michael A and Lichtenberg, Alan J},
  year={2005},
  publisher={John Wiley \& Sons}
}

MY WORKS NOT INCLUDED IN ABOVE CITATIONS

@article{lindsay2015momentum,
  title={Momentum, heat, and neutral mass transport in convective atmospheric pressure plasma-liquid systems and implications for aqueous targets},
  author={Lindsay, Alexander and Anderson, Carly and Slikboer, Elmar and Shannon, Steven and Graves, David},
  journal={Journal of Physics D: Applied Physics},
  volume={48},
  number={42},
  pages={424007},
  year={2015},
  publisher={IOP Publishing}
}

MORE CITATIONS

@article{shankar2011perfluoroalkyl,
  title={Perfluoroalkyl chemicals and chronic kidney disease in US adults},
  author={Shankar, Anoop and Xiao, Jie and Ducatman, Alan},
  journal={American journal of epidemiology},
  pages={kwr171},
  year={2011},
  publisher={Oxford Univ Press}
}

@article{suh2004study,
  title={A study on the relationship between biodegradability enhancement and oxidation of 1, 4-dioxane using ozone and hydrogen peroxide},
  author={Suh, Jung Ho and Mohseni, Madjid},
  journal={Water Research},
  volume={38},
  number={10},
  pages={2596--2604},
  year={2004},
  publisher={Elsevier}
}

@article{cheng2008sonochemical,
  title={Sonochemical degradation of perfluorooctane sulfonate (PFOS) and perfluorooctanoate (PFOA) in landfill groundwater: environmental matrix effects},
  author={Cheng, Jie and Vecitis, Chad D and Park, Hyunwoong and Mader, Brian T and Hoffmann, Michael R},
  journal={Environmental science \& technology},
  volume={42},
  number={21},
  pages={8057--8063},
  year={2008},
  publisher={ACS Publications}
}
@article{geuzaine2009gmsh,
  title={Gmsh: A 3-D finite element mesh generator with built-in pre-and post-processing facilities},
  author={Geuzaine, Christophe and Remacle, Jean-Fran{\c{c}}ois},
  journal={International Journal for Numerical Methods in Engineering},
  volume={79},
  number={11},
  pages={1309--1331},
  year={2009},
  publisher={Wiley Online Library}
}

PARAVIEW

@misc{paraview,
  howpublished = {\url{http://www.paraview.org/}}
}

MY PROGRAMMING WORK

@misc{alexProgramming,
  howpublished = {\url{https://github.com/lindsayad/programming}}
}

IMAGES

@misc{dioxStruct,
  author={Rhododendronbusch},
  note = {[Online; accessed February 22, 2016]},
  url = {https://commons.wikimedia.org/wiki/File:1-4-Dioxane.svg#/media/File:1-4-Dioxane.svg}
}

@misc{pfosStruct,
  author={Su-no-G},
  note = {[Online; accessed February 22, 2016]},
  url = {https://en.wikipedia.org/wiki/Perfluorooctanesulfonic_acid#/media/File:Perfluorooctanesulfonic_acid_structure.svg}
}

nonPDPSIM description

@article{lay2002breakdown,
  title={Breakdown processes in metal halide lamps},
  author={Lay, Brian and Moss, Richard S and Rauf, Shahid and Kushner, Mark J},
  journal={Plasma Sources Science and Technology},
  volume={12},
  number={1},
  pages={8},
  year={2002},
  publisher={IOP Publishing}
}

@article{xiong2010surface,
  title={Surface corona-bar discharges for production of pre-ionizing UV light for pulsed high-pressure plasmas},
  author={Xiong, Zhongmin and Kushner, Mark J},
  journal={Journal of Physics D: Applied Physics},
  volume={43},
  number={50},
  pages={505204},
  year={2010},
  publisher={IOP Publishing}
}

COMSOL plasliq coupled model

@article{shirafuji2014numerical,
  title={Numerical simulation of electric double layer in contact with dielectric barrier discharge: Effects of ion transport parameters in liquid},
  author={Shirafuji, Tatsuru and Nakamura, Akihiro and Tochikubo, Fumiyoshi},
  journal={Japanese Journal of Applied Physics},
  volume={53},
  number={3S2},
  pages={03DG04},
  year={2014},
  publisher={IOP Publishing}
}

Morrow plasliq paper (look at him moving from streamers into plas-liq!)

@inproceedings{morrow2011time,
  title={The time-dependent development of electric double-layers in pure water at metal electrodes: the effect of an applied voltage on the local pH},
  author={Morrow, R and McKenzie, DR},
  booktitle={Proceedings of the Royal Society of London A: Mathematical, Physical and Engineering Sciences},
  pages={rspa20110323},
  year={2011},
  organization={The Royal Society}
}

Rumbach and Go solvated electrons paper

@article{rumbach2015solvation,
  title={The solvation of electrons by an atmospheric-pressure plasma},
  author={Rumbach, Paul and Bartels, David M and Sankaran, R Mohan and Go, David B},
  journal={Nature communications},
  volume={6},
  year={2015},
  publisher={Nature Publishing Group}
}

Yaki plasma needle

@article{sakiyama2006finite,
  title={Finite element analysis of an atmospheric pressure RF-excited plasma needle},
  author={Sakiyama, Y and Graves, DB},
  journal={Journal of Physics D: Applied Physics},
  volume={39},
  number={16},
  pages={3451},
  year={2006},
  publisher={IOP Publishing}
}

OpenFOAM

@misc{foamSite,
  howpublished={\url{http://www.openfoam.com/}}
}

Elmer

@misc{elmerSite,
  howpublished={\url{https://www.csc.fi/web/elmer}}
}

CodeAster

@misc{asterSite,
  howpublished={\url{http://www.code-aster.org/spip.php?rubrique2}}
}

Tendero atmospheric pressure plasma review

@article{tendero2006atmospheric,
  title={Atmospheric pressure plasmas: A review},
  author={Tendero, Claire and Tixier, Christelle and Tristant, Pascal and Desmaison, Jean and Leprince, Philippe},
  journal={Spectrochimica Acta Part B: Atomic Spectroscopy},
  volume={61},
  number={1},
  pages={2--30},
  year={2006},
  publisher={Elsevier}
}

Park. Hicks. APPJ

@article{park2001discharge,
  title={Discharge phenomena of an atmospheric pressure radio-frequency capacitive plasma source},
  author={Park, Jaeyoung and Henins, I and Herrmann, HW and Selwyn, GS and Hicks, RF},
  journal={Journal of Applied Physics},
  volume={89},
  number={1},
  pages={20--28},
  year={2001},
  publisher={AIP Publishing}
}

Moisan. TIA

@article{moisan1994atmospheric,
  title={An atmospheric pressure waveguide-fed microwave plasma torch: the TIA design},
  author={Moisan, M and Sauve, G and Zakrzewski, Z and Hubert, J},
  journal={Plasma Sources Science and Technology},
  volume={3},
  number={4},
  pages={584},
  year={1994},
  publisher={IOP Publishing}
}

Dioxane removal papers

% 10, 13, 11, 14, 15, 16, 17
% TiO2 papers: 19, 20, 21

@article{audenaert2011application,
  title={Application of a mechanistic UV/hydrogen peroxide model at full-scale: Sensitivity analysis, calibration and performance evaluation},
  author={Audenaert, Wim TM and Vermeersch, Yoshi and Van Hulle, Stijn WH and Dejans, Pascal and Dumoulin, Ann and Nopens, Ingmar},
  journal={Chemical Engineering Journal},
  volume={171},
  number={1},
  pages={113--126},
  year={2011},
  publisher={Elsevier}
}

@book{beltran2003ozone,
  title={Ozone reaction kinetics for water and wastewater systems},
  author={Beltran, Fernando J},
  year={2003},
  publisher={CRC Press}
}

@article{yamazaki2007adsorption,
  title={Adsorption and photocatalytic degradation of 1, 4-dioxane on TiO 2},
  author={Yamazaki, Suzuko and Yamabe, Naohisa and Nagano, Shigeyuki and Fukuda, Asuka},
  journal={Journal of Photochemistry and Photobiology A: Chemistry},
  volume={185},
  number={2},
  pages={150--155},
  year={2007},
  publisher={Elsevier}
}

@article{wantala2011visible,
  title={Visible light-irradiated degradation of alachlor on Fe-TiO2 with assistance of H2O2},
  author={Wantala, Kitirote and Khemthong, Pongtanawat and Wittayakun, Jatuporn and Grisdanurak, Nurak},
  journal={Korean Journal of Chemical Engineering},
  volume={28},
  number={11},
  pages={2178--2183},
  year={2011},
  publisher={Springer}
}

@article{pelaez2012review,
  title={A review on the visible light active titanium dioxide photocatalysts for environmental applications},
  author={Pelaez, Miguel and Nolan, Nicholas T and Pillai, Suresh C and Seery, Michael K and Falaras, Polycarpos and Kontos, Athanassios G and Dunlop, Patrick SM and Hamilton, Jeremy WJ and Byrne, J Anthony and O'shea, Kevin and others},
  journal={Applied Catalysis B: Environmental},
  volume={125},
  pages={331--349},
  year={2012},
  publisher={Elsevier}
}

@article{lee2013hybridization,
  title={Hybridization of TiO 2 photocatalysis with coagulation and flocculation for 1, 4-dioxane removal in drinking water treatment},
  author={Lee, Ki-Chang and Choo, Kwang-Ho},
  journal={Chemical engineering journal},
  volume={231},
  pages={227--235},
  year={2013},
  publisher={Elsevier}
}

OH degradation of benzene

@online{benzeneOH,
  author={Daniel.Rico},
  url={\url{https://commons.wikimedia.org/w/index.php?curid=19883054}},
  urlseen = "03-08-16"
}

@book{solarchem,
  title={The UV/Oxidation Handbook},
  publisher={Solarchem Environmental Systems},
  year={1994}
}

@article{tang2006use,
  title={Use of reverse osmosis membranes to remove perfluorooctane sulfonate (PFOS) from semiconductor wastewater},
  author={Tang, Chuyang Y and Fu, Q Shiang and Robertson, AP and Criddle, Craig S and Leckie, James O},
  journal={Environmental science \& technology},
  volume={40},
  number={23},
  pages={7343--7349},
  year={2006},
  publisher={ACS Publications}
}

@article{tang2007effect,
  title={Effect of flux (transmembrane pressure) and membrane properties on fouling and rejection of reverse osmosis and nanofiltration membranes treating perfluorooctane sulfonate containing wastewater},
  author={Tang, Chuyang Y and Fu, Q Shiang and Criddle, Craig S and Leckie, James O},
  journal={Environmental science \& technology},
  volume={41},
  number={6},
  pages={2008--2014},
  year={2007},
  publisher={ACS Publications}
}

@article{betts2008chemical,
  title={Chemical exposures: Not immune to PFOS effects?},
  author={Betts, Kellyn S},
  journal={Environmental health perspectives},
  volume={116},
  number={7},
  pages={A290},
  year={2008},
  publisher={National Institute of Environmental Health Science}
}

@article{hori2005efficient,
  title={Efficient decomposition of environmentally persistent perfluorocarboxylic acids by use of persulfate as a photochemical oxidant},
  author={Hori, Hisao and Yamamoto, Ari and Hayakawa, Etsuko and Taniyasu, Sachi and Yamashita, Nobuyoshi and Kutsuna, Shuzo and Kiatagawa, Hiroshi and Arakawa, Ryuichi},
  journal={Environmental Science \& Technology},
  volume={39},
  number={7},
  pages={2383--2388},
  year={2005},
  publisher={ACS Publications}
}

@article{hori2006efficient,
  title={Efficient decomposition of environmentally persistent perfluorooctanesulfonate and related fluorochemicals using zerovalent iron in subcritical water},
  author={Hori, Hisao and Nagaoka, Yumiko and Yamamoto, Ari and Sano, Taizo and Yamashita, Nobuyoshi and Taniyasu, Sachi and Kutsuna, Shuzo and Osaka, Issey and Arakawa, Ryuichi},
  journal={Environmental science \& technology},
  volume={40},
  number={3},
  pages={1049--1054},
  year={2006},
  publisher={ACS Publications}
}

@article{moriwaki2005sonochemical,
  title={Sonochemical decomposition of perfluorooctane sulfonate and perfluorooctanoic acid},
  author={Moriwaki, Hiroshi and Takagi, Youichi and Tanaka, Masanobu and Tsuruho, Kenshiro and Okitsu, Kenji and Maeda, Yasuaki},
  journal={Environmental science \& technology},
  volume={39},
  number={9},
  pages={3388--3392},
  year={2005},
  publisher={ACS Publications}
}

Emi communication

@misc{emiComm,
  author={Kawamura, Emi},
  howpublished={Personal communication}
}

Monolithic vs. segregated

@article{heil2008solvers,
  title={Solvers for large-displacement fluid--structure interaction problems: segregated versus monolithic approaches},
  author={Heil, Matthias and Hazel, Andrew L and Boyle, Jonathan},
  journal={Computational Mechanics},
  volume={43},
  number={1},
  pages={91--101},
  year={2008},
  publisher={Springer}
}

Graves review article on RONS applied to medicine and biology

@article{graves2012emerging,
  title={The emerging role of reactive oxygen and nitrogen species in redox biology and some implications for plasma applications to medicine and biology},
  author={Graves, David B},
  journal={Journal of Physics D: Applied Physics},
  volume={45},
  number={26},
  pages={263001},
  year={2012},
  publisher={IOP Publishing}
}

Weltmann antimicrobial

@article{weltmann2008antimicrobial,
  title={Antimicrobial treatment of heat sensitive products by miniaturized atmospheric pressure plasma jets (APPJs)},
  author={Weltmann, Klaus Dieter and Brandenburg, Ronny and von Woedtke, Thomas and Ehlbeck, J and Foest, R and Stieber, M and Kindel, E},
  journal={Journal of Physics D: Applied Physics},
  volume={41},
  number={19},
  pages={194008},
  year={2008},
  publisher={IOP Publishing}
}

Cancer Keidar

@article{keidar2013cold,
  title={Cold atmospheric plasma in cancer therapya)},
  author={Keidar, Michael and Shashurin, Alex and Volotskova, Olga and Stepp, Mary Ann and Srinivasan, Priya and Sandler, Anthony and Trink, Barry},
  journal={Physics of Plasmas (1994-present)},
  volume={20},
  number={5},
  pages={057101},
  year={2013},
  publisher={AIP Publishing}
}

Wounds

@article{nastuta2011stimulation,
  title={Stimulation of wound healing by helium atmospheric pressure plasma treatment},
  author={Nastuta, Andrei Vasile and Topala, Ionut and Grigoras, Constantin and Pohoata, Valentin and Popa, Gheorghe},
  journal={Journal of Physics D: Applied Physics},
  volume={44},
  number={10},
  pages={105204},
  year={2011},
  publisher={IOP Publishing}
}

Saad GMRES

@article{saad1986gmres,
  title={GMRES: A generalized minimal residual algorithm for solving nonsymmetric linear systems},
  author={Saad, Youcef and Schultz, Martin H},
  journal={SIAM Journal on scientific and statistical computing},
  volume={7},
  number={3},
  pages={856--869},
  year={1986},
  publisher={SIAM}
}

Basis function illustration

@misc{FlahertyFEA,
  author={Joseph Flaherty},
  title={Finite Element Approximation},
  publisher={Rensselaer Polytechnic Institute},
  url={\url{http://www.cs.rpi.edu/~flaherje/pdf/fea4.pdf}},
  urlseen = "03-24-16"
}

ILU

@article{dupont1968approximate,
  title={An approximate factorization procedure for solving self-adjoint elliptic difference equations},
  author={Dupont, Todd and Kendall, Richard P and Rachford, Jr, HH},
  journal={SIAM Journal on Numerical Analysis},
  volume={5},
  number={3},
  pages={559--573},
  year={1968},
  publisher={SIAM}
}

@book{saad1996iterative,
  title={Iterative methods for sparse linear systems},
  author={Saad, Yousef},
  year={1996},
  publisher={Siam}
}

Exodus file

@techreport{schoof1994exodus,
  title={EXODUS II: a finite element data model},
  author={Schoof, Larry A and Yarberry, Victor R},
  year={1994},
  institution={Sandia National Labs., Albuquerque, NM (United States)}
}

dollar bracket expressions

@misc{GetPot,
  author={Frank-Rene Schaefer},
  title={GetPot Version 1.0: Powerful Input File and Command Line Parser},
  url={\url{http://getpot.sourceforge.net/node22.html}},
  urlseen = "03-30-16"
}

Tyrosine reaction references

@article{goldstein2000tyrosine,
  title={Tyrosine Nitration by Simultaneous Generation of⋅ NO and O⨪ 2 under Physiological Conditions HOW THE RADICALS DO THE JOB},
  author={Goldstein, Sara and Czapski, Gidon and Lind, Johan and Mer{\'e}nyi, Gabor},
  journal={Journal of Biological Chemistry},
  volume={275},
  number={5},
  pages={3031--3036},
  year={2000},
  publisher={ASBMB}
}

@article{solar1984reactivity,
  title={Reactivity of hydroxyl with tyrosine in aqueous solution studied by pulse radiolysis},
  author={Solar, S and Solar, W and Getoff, N},
  journal={The Journal of Physical Chemistry},
  volume={88},
  number={10},
  pages={2091--2095},
  year={1984},
  publisher={ACS Publications}
}

Resonant absorption spec

@article{hibert1999oh,
  title={[OH (X)] measurements by resonant absorption spectroscopy in a pulsed dielectric barrier discharge},
  author={Hibert, C and Gaurand, I and Motret, O and Pouvesle, JM},
  journal={Journal of applied physics},
  volume={85},
  number={10},
  pages={7070--7075},
  year={1999},
  publisher={AIP Publishing}
}

global model of atmospheric He-H2O with water cluster ions

@article{liu2010global,
  title={Global model of low-temperature atmospheric-pressure He+ H2O plasmas},
  author={Liu, Ding-Xin and Bruggeman, Peter and Iza, Felipe and Rong, Ming-Zhe and Kong, Michael G},
  journal={Plasma Sources Science and Technology},
  volume={19},
  number={2},
  pages={025018},
  year={2010},
  publisher={IOP Publishing}
}

Ingels Graves fertigation

@inproceedings{ingels2015modern,
  title={Modern plasma technology for nitrogen fixation-new opportunities? Proceedings of the International Fertiliser Society 771, London, UK, 24th June, 2015.},
  author={Ingels, R and Graves, D and Anderson, S and Koller, R and others},
  booktitle={Proceedings-International Fertiliser Society},
  number={771},
  year={2015},
  organization={International Fertiliser Society}
}

@article{morrow2006time,
  title={The time-dependent development of electric double-layers in saline solutions},
  author={Morrow, R and McKenzie, DR and Bilek, MMM},
  journal={Journal of Physics D: Applied Physics},
  volume={39},
  number={5},
  pages={937},
  year={2006},
  publisher={IOP Publishing}
}

repository: lindsayad/thesis

repo_name: lindsayad/thesis


text:
require recipes-core/images/core-image-minimal.bb

DESCRIPTION = "A small image just capable of allowing a device to boot and \
is suitable for development work."

IMAGE_FEATURES += "dev-pkgs"

license: MIT

license_type: permissive

branch_name: refs/heads/main

extension: bb


text:
SUMMARY = "Install a Debian system into a subdirectory"
HOMEPAGE = "https://wiki.debian.org/Debootstrap"
SECTION = "devel"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://debian/copyright;md5=1e68ced6e1689d4cd9dac75ff5225608"

SRC_URI  = "\
    ${DEBIAN_MIRROR}/main/d/debootstrap/debootstrap_${PV}.tar.gz \
    file://0001-support-to-override-usr-sbin-and-usr-share.patch \
    file://0002-support-to-override-usr-bin-arch-test.patch \
    file://0001-do-not-hardcode-the-full-path-of-dpkg.patch \
"

SRC_URI[sha256sum] = "09e7f8795fee894b77994213ee3a588e9d8f96ddf5f93afdec91e9a137aa7866"

S = "${WORKDIR}/debootstrap"

DEPENDS = " \
    virtual/fakeroot-native \
"

fakeroot do_install() {
    oe_runmake 'DESTDIR=${D}' install
    chown -R root:root ${D}${datadir}/debootstrap
}

BBCLASSEXTEND = "native nativesdk"

repository: openembedded/meta-openembedded

repo_name: openembedded/meta-openembedded

branch_name: refs/heads/master

gha_license_id: MIT

gha_language: BitBake


text:
@font-face {
    font-family: 'OpenSans';
    src: url('/resources/fonts/opensans-light.eot');
    src: url('/resources/fonts/opensans-light.eot?#iefix') format('embedded-opentype'),
         url('/resources/fonts/opensans-light.woff') format('woff'),
         url('/resources/fonts/opensans-light.ttf') format('truetype'),
         url('/resources/fonts/opensans-light.svg#OpenSanslight') format('svg');
    font-weight: 300;
    font-style: normal;

}
@font-face {
    font-family: 'OpenSans';
    src: url('/resources/fonts/opensans-regular.eot');
    src: url('/resources/fonts/opensans-regular.eot?#iefix') format('embedded-opentype'),
         url('/resources/fonts/opensans-regular.woff') format('woff'),
         url('/resources/fonts/opensans-regular.ttf') format('truetype'),
         url('/resources/fonts/opensans-regular.svg#OpenSansregular') format('svg');
    font-weight: 400;
    font-style: normal;
}
@font-face {
    font-family: 'OpenSans';
    src: url('/resources/fonts/opensans-italic.eot');
    src: url('/resources/fonts/opensans-italic.eot?#iefix') format('embedded-opentype'),
         url('/resources/fonts/opensans-italic.woff') format('woff'),
         url('/resources/fonts/opensans-italic.ttf') format('truetype'),
         url('/resources/fonts/opensans-italic.svg#OpenSansregular') format('svg');
    font-weight: 400;
    font-style: italic;
}
@font-face {
    font-family: 'OpenSans';
    src: url('/resources/fonts/opensans-semibold.eot');
    src: url('/resources/fonts/opensans-semibold.eot?#iefix') format('embedded-opentype'),
         url('/resources/fonts/opensans-semibold.woff') format('woff'),
         url('/resources/fonts/opensans-semibold.ttf') format('truetype'),
         url('/resources/fonts/opensans-semibold.svg#OpenSansmedium') format('svg');
    font-weight: 500;
    font-style: normal;
}
@font-face {
    font-family: 'OpenSans';
    src: url('/resources/fonts/opensans-bold.eot');
    src: url('/resources/fonts/opensans-bold.eot?#iefix') format('embedded-opentype'),
         url('/resources/fonts/opensans-bold.woff') format('woff'),
         url('/resources/fonts/opensans-bold.ttf') format('truetype'),
         url('/resources/fonts/opensans-bold.svg#OpenSansbold') format('svg');
    font-weight: 600;
    font-style: normal;
}

repository: ConstYavorskiy/HeractJS

repo_name: ConstYavorskiy/HeractJS

gha_language: JavaScript

extension: css


text:
@book{bookKey,
	author = {I J Kuss},
	title = {On the Importance of Kissing Up to Your Boss},
	edition = {5},
	publisher = {Dilbert Books},
	address = {Cambridge MA},
	year = {1995}
}

repository: hygull/bibtex

repo_name: hygull/bibtex

extension: bib


text:
@article{bien2018deep,
  title={Deep-learning-assisted diagnosis for knee magnetic resonance imaging: Development and retrospective validation of MRNet},
  author={Bien, Nicholas and Rajpurkar, Pranav and Ball, Robyn L and Irvin, Jeremy and Park, Allison and Jones, Erik and Bereket, Michael and Patel, Bhavik N and Yeom, Kristen W and Shpanskaya, Katie and others},
  journal={PLoS medicine},
  volume={15},
  number={11},
  pages={e1002699},
  year={2018},
  publisher={Public Library of Science}
}

@article{simonyan2014very,
  title={Very deep convolutional networks for large-scale image recognition},
  author={Simonyan, Karen and Zisserman, Andrew},
  journal={arXiv preprint arXiv:1409.1556},
  year={2014}
}

@inproceedings{he2016deep,
  title={Deep residual learning for image recognition},
  author={He, Kaiming and Zhang, Xiangyu and Ren, Shaoqing and Sun, Jian},
  booktitle={Proceedings of the IEEE conference on computer vision and pattern recognition},
  pages={770--778},
  year={2016}
}

@InProceedings{niftynet18,
  author = "Eli Gibson and Wenqi Li and Carole Sudre and Lucas Fidon and
            Dzhoshkun I. Shakir and Guotai Wang and Zach Eaton-Rosen and
            Robert Gray and Tom Doel and Yipeng Hu and Tom Whyntie and
            Parashkev Nachev and Marc Modat and Dean C. Barratt and
            Sébastien Ourselin and M. Jorge Cardoso and Tom Vercauteren",
  title = "NiftyNet: a deep-learning platform for medical imaging",
  journal = "Computer Methods and Programs in Biomedicine",
  year = "2018",
  issn = "0169-2607",
  doi = "https://doi.org/10.1016/j.cmpb.2018.01.025",
  url = "https://www.sciencedirect.com/science/article/pii/S0169260717311823",
}

@article{liu2018applications,
  title={Applications of deep learning to MRI images: A survey},
  author={Liu, Jin and Pan, Yi and Li, Min and Chen, Ziyue and Tang, Lu and Lu, Chengqian and Wang, Jianxin},
  journal={Big Data Mining and Analytics},
  volume={1},
  number={1},
  pages={1--18},
  year={2018},
  publisher={TUP}
}

@article{mishkin2017systematic,
  title={Systematic evaluation of convolution neural network advances on the imagenet},
  author={Mishkin, Dmytro and Sergievskiy, Nikolay and Matas, Jiri},
  journal={Computer Vision and Image Understanding},
  volume={161},
  pages={11--19},
  year={2017},
  publisher={Elsevier}
}

@article{lundervold2018overview,
  title={An overview of deep learning in medical imaging focusing on MRI},
  author={Lundervold, Alexander Selvikv{\aa}g and Lundervold, Arvid},
  journal={Zeitschrift f{\"u}r Medizinische Physik},
  year={2018},
  publisher={Elsevier}
}

@article{nyul2000new,
  title={New variants of a method of MRI scale standardization},
  author={Ny{\'u}l, L{\'a}szl{\'o} G and Udupa, Jayaram K and Zhang, Xuan},
  journal={IEEE transactions on medical imaging},
  volume={19},
  number={2},
  pages={143--150},
  year={2000},
  publisher={Citeseer}
}

@inproceedings{prasoon2013deep,
  title={Deep feature learning for knee cartilage segmentation using a triplanar convolutional neural network},
  author={Prasoon, Adhish and Petersen, Kersten and Igel, Christian and Lauze, Fran{\c{c}}ois and Dam, Erik and Nielsen, Mads},
  booktitle={International conference on medical image computing and computer-assisted intervention},
  pages={246--253},
  year={2013},
  organization={Springer}
}

repository: FragLegs/mrnet

repo_name: FragLegs/mrnet


text:
SUMMARY = "Multi-platform Atari 2600 VCS emulator"
HOMEPAGE = "https://stella-emu.github.io/"
SECTION = "emulators"

LICENSE = "GPL-2.0-only"
LIC_FILES_CHKSUM = "file://License.txt;md5=878e3965c7b52d85827c75f5a2f3b314"

inherit autotools-brokensep pkgconfig gtk-icon-cache

DEPENDS += "libsdl2 zlib libpng"

SRC_URI = " \
    https://github.com/stella-emu/stella/releases/download/${PV}/${BPN}-${PV}-src.tar.xz \
    file://0001-custtomize-configure-and-Makefile-to-our-needs.patch \
"
SRC_URI[sha256sum] = "b49d5e5a5aa872e1f4b6f24eabd72304abdd577801d6ec349760c73b99e7f14d"

CLEANBROKEN = "1"

repository: schnitzeltony/meta-retro

repo_name: schnitzeltony/meta-retro


text:
@phdthesis{cangea2021exploiting,
  title={Exploiting multimodality and structure in world representations},
  doi={10.17863/CAM.72490},
  author={Cangea, C\u{a}t\u{a}lina},
  year={2021},
  school={University of Cambridge}
}


text:
%fix me
@online{Kubernetes,
    title = {{Kubernetes}},
    url = {http://kubernetes.io/},
    citedate = {2016-05-13},
    year = {2014},
}

%fix me
@online{Cosmos,
    title = {{Cosmos: big data and big challenges}},
    author  = {Pat Helland},
    url = {http://research.microsoft.com/en-us/events/fs2011/helland_cosmos_big_data_and_big_challenges.pdf},
    year = {2011},
    citedate = {2016-01-15},
}

%fix me
@online{Aurora,
    title = {{Aurora: A Mesos Framework for Long-running Services and Cron Jobs}},
    author = {{Apache}},
    citedate = {2016-05-13},
    url = {http://aurora.apache.org/}
}

%fix me
@online{YARN,
    title = {{Hadoop MapReduce Next Generation --- Capacity Scheduler}},
    url = {http://hadoop.apache.org/docs/r2.2.0/hadoop-yarn/hadoop-yarn-site/CapacityScheduler.html},
    citedate = {2016-05-13},
    year = {2013},
}

@inproceedings {Apollo,
    author = {Boutin, Eric and Ekanayake, Jaliya and Lin, Wei and Shi, Bing and Zhou, Jingren and Qian, Zhengping and Wu, Ming and Zhou, Lidong},
    title = {Apollo: Scalable and Coordinated Scheduling for Cloud-scale Computing},
    booktitle = {Proceedings of the 11th USENIX Conference on Operating Systems Design and Implementation},
    series = {OSDI '14},
    year = {2014},
    isbn = {978-1-931971-16-4},
    location = {Broomfield, CO},
    pages = {285--300},
    numpages = {16},
    //url = {http://dl.acm.org/citation.cfm?id=2685048.2685071},
    acmid = {2685071},
    publisher = {USENIX Association},
    address = {Berkeley, CA, USA},
}

}

@article{Fuxi,
 author = {Zhang, Zhuo and Li, Chao and Tao, Yangyu and Yang, Renyu and Tang, Hong and Xu, Jie},
 title = {Fuxi: A Fault-tolerant Resource Management and Job Scheduling System at Internet Scale},
 journal = {Proc. VLDB Endow.},
 issue_date = {August 2014},
 volume = {7},
 number = {13},
 month = {aug},
 year = {2014},
 issn = {2150-8097},
 pages = {1393--1404},
 numpages = {12},
 //url = {http://dl.acm.org/citation.cfm?id=2733004.2733012},
 acmid = {2733012},
 publisher = {VLDB Endowment},
}

gha_language: TeX


text:
DESCRIPTION = "Go supplementary packages for\
 low-level interactions with the operating system"
HOMEPAGE = "https://github.com/golang/sys"
LICENSE = "BSD"
LIC_FILES_CHKSUM = "file://src/${GO_IMPORT}/LICENSE;md5=5d4950ecb7b26d2c5e4e7b4e0dd74707"
SRC_URI = "git://github.com/golang/sys"

require golang-x-srcrevs.inc

SRCREV = "${GOLANG_X_SYS_SRCREV}"
PV="1.0+git${SRCPV}"

GO_IMPORT = "golang.org/x/sys"
GO_INSTALL = "${GO_IMPORT}/unix"
S = "${WORKDIR}/git"

inherit go

BBCLASSEXTEND = "native nativesdk"
ALLOW_EMPTY_${PN} = "1"

repository: ruisebastiao/test-distro

repo_name: ruisebastiao/test-distro