text:
field theory for diblock copolymers grafted to a sphere.pdf",
	methods = "SCFT",
	year = 2011
}

@Article{2011-Woelfle-OT,
	Author = "Michael Woelfle and Piero Olliaro and Matthew H .Todd",
	Title = "{Open science is a research accelerator}",
	Journal = "Nature Chem.",
	Volume = "3",
	Pages = "745–748",
	Note = "Page 748: (...) if we wish to reach scientific goals quickly, why is so much science not practised this way?",
	collection = "cheminformatics",
	doi = "10.1038/nchem.1149",
	keywords = "electronic lab notebook; open data",
	localfile = "cheminformatics/2011 - Open science is a research accelerator.pdf",
	rating = "2",
	read = "2013-04-10",
	systems = "praziquantel",
	type = "Commentary",
	year = 2011
}

@Article{2011-Yoo-KJCYKLKB,
	Author = "Misang Yoo and Seyong Kim and Se Gyu Jang and Soo-Hyong Choi and Hyunseung Yang and Edward J. Kramer and Won Bo Lee and Bumjoon J. Kim and Joona Bang",
	Title = "{Controlling the orientation of block copolymer thin films using thermally-stable gold nanoparticles with tuned surface chemistry}",
	Journal = "Macromolecules",
	Volume = "44",
	Number = "23",
	Pages = "9356–9365",
	collection = "block copolymer nanocomposites",
	doi = "10.1021/ma2019254",
	keywords = "block copolymers; mesophase transitions; nanospheres; polymer nanocomposites; thin films",
	localfile = "block copolymer nanocomposites/2011 - Controlling the orientiation of block copolymer thin films using thermally-stable gold nanoparticles with tuned surface chemistry.pdf",
	year = 2011
}

@Article{2011-Zhang-SS,
	Author = "Liangshun Zhang and G. J. Agur Sevink and Friederike Schmid",
	Title = "{Hybrid lattice Boltzmann/dynamic self-consistent field simulations of microphase separation and vesicle formation in block copolymer systems}",
	Journal = "Macromolecules",
	Volume = "44",
	Number = "23",
	Pages = "9434–9447",
	collection = "block copolymers",
	doi = "10.1021/ma2018638",
	keywords = "block copolymers",
	localfile = "block copolymers/2011 - Hybrid lattice Boltzmann-dynamic self-consistent field simulations of microphase separation and vesicle formation in block copolymer systems.pdf",
	methods = "LB",
	year = 2011
}

@Article{2012-Allesina,
	Author = "Stefano Allesina",
	Title = "{Modeling peer review: an agent-based apporach}",
	Journal = "Ideas in Ecology and Evolution",
	Volume = "5",
	Number = "2",
	Pages = "27–35",
	collection = "scientometrics",
	doi = "10.4033/iee.2012.5b.8.f",
	keywords = "peer review",
	localfile = "scientometrics/2012 - Modeling peer review: an agent-based approach.pdf",
	methods = "agent-based modeling",
	rating = "2",
	read = "2013-02-06",
	year = 2012
}

@Article{2012-Alvarez-Yan,
	Author = "Marco A. Alvarez and Changhui Yan",
	Title = "{A new protein graph model for function prediction}",
	Journal = "Comp. Biol. Chem.",
	Volume = "37",
	Pages = "6–10",
	Note = "Interesting idea, but only applied to discriminating enzymes from non-enzymes and a generic functional feature (DNA-binding).",
	collection = "proteins",
	doi = "10.1016/j.compbiolchem.2012.01.003",
	keywords = "protein function",
	localfile = "proteins/2012 - A new protein graph model for function prediction.pdf",
	rating = "2",
	read = "2013-10-08",
	year = 2012
}

@Article{2012-Bernard,
	Author = "H. Russell Bernard",
	Title = "{The science in social science}",
	Journal = "Proc. Natl. Acad. Sci.",
	Note = "Contains plenty of valuable references to the origins of statistical methods.",
	collection = "statistics",
	doi = "10.1073/pnas.1218054109",
	localfile = "statistics/2012 - The science in social science.pdf",
	year = 2012
}

@Article{2012-Biswas-Datta,
	Author = "Nupur Biswas and Alokmay Datta",
	Title = "{Polymer entanglement - a barrier to nanoparticles aggregation}",
	Journal = "Chem. Phys. Lett.",
	Volume = "531",
	Pages = "177–182",
	abstract = "Au metal nanoparticles embedded in polymer matrices aggregate at elevated temperatures overcoming the barrier induced by entanglement of polymer chains. The temperature required for nanoparticle agglomeration depends on the polymer chain length, providing a measure of the potential barrier induced by entanglement of polymer chains. For higher chain lengths a non-linear dependence of the aggregation temperature with molecular weight was found. These results suggest that, in addition to the role of nanoparticle–polymer interactions, polymer–polymer interactions influence the aggregation of the nanoparticles.",
	collection = "polymer nanocomposites",
	doi = "10.1016/j.cplett.2012.02.029",
	keywords = "nanoparticle aggregation; nanospheres; polymer entanglement; thin films",
	localfile = "polymer nanocomposites/2012 - Polymer entanglement - a berrier to nanoaprticles aggregation.pdf",
	methods = "TEM, AFM, EDX",
	rating = "2",
	read = "2012-05-25",
	systems = "Au-dodecanethiol@PS",
	year = 2012
}

@Article{2012-Borhani-Shaw,
	Author = "David W. Borhani and David E. Shaw",
	Title = "{The future of molecular dynamics simulations in drug discovery}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "15–26",
	Note = "Page 20: Of great interest will be hte computational assembly of macromolecules. Page 21: Simple fixes - (...) replacement of point charges by smeared charges of some form (e.g., multipoles, exponentials, Gaussian). Page 21: The more advanced force fields of today appear to work well in limited cases. Page 21: Do we really need to compute electrostatic interactions from one end to the other?",
	collection = "molecular dynamics",
	doi = "10.1007/s10822-011-9517-y",
	keywords = "drug discovery",
	localfile = "molecular dynamics/2012 - The future of molecular dynamics simulations in drug discovery.pdf",
	methods = "MD",
	rating = "2",
	read = "2012-02-24",
	year = 2012
}

@Article{2012-Clark-Waldman,
	Author = "Robert D. Clark and Marvin Waldman",
	Title = "{Lions and tigers and bears, oh my! Three barriers to progress in computer-aided molecular design}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "29–34",
	Note = "Pertinent discussion about entropy, uncertainty as well as data curation and databases.",
	collection = "cheminformatics",
	doi = "10.1007/s10822-011-9504-3",
	keywords = "databases",
	localfile = "cheminformatics/2012 - Lions and tigers and bear, oh my! Three barriers to progress in computer-aided molecular design.pdf",
	rating = "2",
	read = "2012-08-10",
	year = 2012
}

@Article{2012-Dill-MacCallum,
	Author = "Ken A. Dill and Justin L. MacCallum",
	Title = "{The protein-folding problem, 50 years on}",
	Journal = "Science",
	Volume = "338",
	Pages = "1042–1046",
	Note = "No real new information, but a well written terse review about the major points and things to do in protein folding.",
	collection = "protein structure",
	doi = "10.1126/science.1219021",
	keywords = "protein structure",
	localfile = "protein structure/2012 - The protein-folding problem 50 years on.pdf",
	rating = "2",
	read = "2013-02-14",
	type = "Review",
	year = 2012
}

@Article{2012-Domingos,
	Author = "Pedro Domingos",
	Title = "{A few useful things to know about machine learning}",
	Journal = "Commun. ACM",
	Volume = "55",
	Pages = "78–87",
	collection = "informatics",
	doi = "10.1145/2347736.2347755",
	keywords = "machine learning",
	localfile = "informatics/2012 - A few useful things to know about machine learning.pdf",
	rating = "3",
	read = "2015-04-15",
	type = "Review",
	year = 2012
}

@Article{2012-Feng-SSC,
	Author = "Lang Feng and Roujie Sha and Nadrian C. Seeman and Paum M. Chaikin",
	Title = "{Topological interaction by entangled DNA loops}",
	Journal = "Phys. Rev. Lett.",
	Volume = "109",
	Pages = "188301",
	collection = "nucleic acids",
	doi = "10.1103/PhysRevLett.109.188301",
	keywords = "nanoparticles; grafting",
	localfile = "nucleic acids/2012 - Topological interaction by entangled DNA loops.pdf",
	rating = "2",
	read = "2012-12-10",
	year = 2012
}

@Article{2012-Furnham-BT,
	Author = "Nicholas Furnham and Tjaart A. P. {de Beer} and Janet M. Thornton",
	Title = "{Current challenges in genome annotation through structural biology and bioinformatics}",
	Journal = "Curr. Op. Struct. Biol.",
	Volume = "22",
	Pages = "594–601",
	Note = "Highlights the current reliance and increasing leverage of experimental data in computational genomics, and the importance of context. Page 695: (...) using the human genome as an example, of the 5462 entries in the PDB that contain a non-redundant human protein structure, some 12\% (694) have one or more small molecules/ligands/small peptide co-crystallized.",
	collection = "proteins",
	doi = "10.1016/j.sbi.2012.07.005",
	keywords = "protein function; protein annotation; homology",
	localfile = "proteins/2012 - Current challenges in genome annotation through structural biology and bioinformatics.pdf",
	rating = "2",
	read = "2013-10-16",
	year = 2012
}

@Article{2012-Genheden-Ryde,
	Author = "Samuel Genheden and Ulf Ryde",
	Title = "{Will molecule dynamics simulations of proteins ever reach equilibrium?}",
	Journal = "Phys. Chem. Chem. Phys.",
	Volume = "14",
	Pages = "8662–8677",
	Note = "... it is not possible to obtain converged conformational entropies of any usable precision. (...) it shows that most MD simualtiosn of proteins will not be equilibrated within 1 ms in the sense that all properties are independent of simulation time. We show that the conformational entropies are extremely sensitive to the equilibration (...) FEP free energies are extremely stable.",
	collection = "molecular dynamics",
	doi = "10.1039/c2cp23961b",
	keywords = "molecular dynamics; protein structure",
	localfile = "molecular dynamics/2012 - Will molecular dynamics simualtiosn of proteins every reach equilibrium?.pdf",
	methods = "MD; FEP",
	rating = "2",
	read = "2013-12-10",
	year = 2012
}

@Article{2012-Gordon-FPS,
	Author = "Mark S. Gordon and Dmitri G. Fedorov and Spencer R. Pruit and Lyudmila V. Slipchenko",
	Title = "{Fragmentation methods: a route to accurate calculations on large systems}",
	Journal = "Chem. Rev.",
	Volume = "112",
	Pages = "632–672",
	collection = "molecular fragmentation",
	doi = "10.1021/cr200093j",
	localfile = "molecular fragmentation/2012 - Fragmentation methods: a route t oaccurate calcualtions on large systems.pdf",
	methods = "EFP, FMO, MFCC, MTA, SFM",
	rating = "2",
	read = "2012-08-28",
	year = 2012
}

@Article{2012-Hyman-Simons,
	Author = "Anthony A. Hyman and Kai Simons",
	Title = "{Beyond oil and water - phase transitions in cells}",
	Journal = "Science",
	Volume = "337",
	Pages = "1047–1049",
	abstract = "The organization of cellular compartments may be driven by liquid phase separation and the collective low-affinity interactions of macromolecules.",
	collection = "cells",
	doi = "10.1126/science.1223728",
	keywords = "phase transitions",
	localfile = "cells/2012 - Beyond oil and water - phase transitions in cells.pdf",
	rating = "2",
	read = "2013-06-20",
	year = 2012
}

@Article{2012-Kao-BCJEX,
	Author = "Joseph Kao and Peter Bai and Vivian Chuang and Zhang Jiang and Peter Ercius and Ting Xu",
	Title = "{Nanoparticle assemblies in thin films of supramolecular nanocomposites}",
	Journal = "Nano Lett.",
	Volume = "12",
	Pages = "2610–2618",
	abstract = "We demonstrated a versatile approach to obtain layered nanoparticle sheets with in-plane hexagonal order and 3-D ordered arrays of single nanoparticle chains in thin films upon blending nanoparticles with block copolymer (BCP)-based supramolecules. Basic understanding on the thermodynamic and kinetic aspects of the assembly process paved a path to manipulate these assemblies to meet demands in nanoparticle-based device fabrication and understand structure−property correlations.",
	collection = "block copolymer nanocomposites",
	doi = "10.1021/nl300999u",
	localfile = "block copolymer nanocomposites/2012 - Nanoparticle assemblies in thin films of supramolecular nanocomposites.pdf",
	rating = "2",
	read = "2012-07-01",
	year = 2012
}

@Article{2012-Karr-SMGJBAGC,
	Author = "Jonathan R. Karr and Jayodita C. Sanghvi and Derek N. Macklin and Miriam V. Gutschow and Jared M. Jacobs and Benjamin Bolival and Bacyra Assad-Garcia and John I. Glass and Markus W. Covert",
	Title = "{A whole-cell computational model predicts phenotype from genotype}",
	Journal = "Cell",
	Volume = "150",
	Pages = "389–401",
	collection = "cells",
	doi = "10.1016/j.cell.2012.05.044",
	localfile = "cells/2012 - A whole-cell computational model predicts phenotype form genotype.pdf",
	rating = "3",
	read = "2013-08-02",
	year = 2012
}

@Article{2012-Kenny,
	Author = "Peter W. Kenny",
	Title = "{Computation, experiment and molecular design}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "69–72",
	Note = "Page 70: (...) and I like to think of the hydrophobic force as a non-local, indirect, electrostatic interaction.",
	collection = "cheminformatics",
	doi = "10.1007/s10822-011-9515-0",
	localfile = "cheminformatics/2012 - Computation, experiment and molecular design.pdf",
	rating = "2",
	read = "2012-10-03",
	year = 2012
}

@Article{2012-Kostjukov-Evstigneev,
	Author = "Viktor V. Kostjukov and Maxim P. Evstigneev",
	Title = "{Relation between the change in DNA elasticity on ligand binding and the binding energetics}",
	Journal = "Phys. Rev. E",
	Volume = "86",
	Pages = "031919",
	collection = "nucleic acid drugs",
	doi = "10.1103/PhysRevE.86.031919",
	localfile = "nucleic acid drugs/2012 - Relation between the change in DNA elasticity on ligand binding and the binding energetics.pdf",
	rating = "2",
	read = "2012-09-23",
	url = "http://link.aps.org/doi/10.1103/PhysRevE.86.031919",
	year = 2012
}

@Article{2012-Kramer-GM,
	Author = "Christian Kramer and Peter Gedeck and Markus Meuwly",
	Title = "{Atomic multipoles: electrostatic potential fit, local reference axis systems, and conformation dependence}",
	Journal = "J. Comp. Chem.",
	Volume = "33",
	Pages = "1673–1688",
	collection = "molecular electrostatics",
	localfile = "molecular electrostatics/2012 - Atomic multipoles: electrostatic potential fit, local reference axis systems, and conformational dependence.pdf",
	year = 2012
}

@Article{2012-Kulp-SDHMGS,
	Author = "Daniel W. Kulp and Sabareesh Subramaniam and Jason E. Donald and Brett T. Hannigan and Benjamin K. Meuller and Gevorg Grigoryan and Alessandro Senes",
	Title = "{Structural informatics, modeling, and design with an open-source molecular software library (MSL)}",
	Journal = "J. Comp. Chem.",
	Volume = "33",
	Pages = "1645–1661",
	collection = "cheminformatics",
	doi = "10.1002/jcc.22968",
	localfile = "cheminformatics/2012 - Structural informatics, modeling, and design with an open-source molecular software library (MSL).pdf",
	methods = "C++",
	rating = "2",
	read = "2012-10-16",
	year = 2012
}

@Article{2012-Liebeschuetz-HOG,
	Author = "John Liebescheutz and Jana Hennemann and Tjelvar Olsson and Colin R. Groom",
	Title = "{The good, the bad and the twisted: a survey of ligand geometry in protein crystal structures}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "169–183",
	Note = "Page. 169: when we talk about structure we are, of course, really discussing models. (...) correctly interpreting the electorn density in and around the protein binding site is far from being a straightforward task.",
	collection = "protein structure",
	doi = "10.1007/s10822-011-9538-6",
	localfile = "protein structure/2012 - The good, the bad and the twisted: a survey of ligand geometry in protein crystal structures.pdf",
	rating = "2",
	read = "2013-01-25",
	year = 2012
}

@Article{2012-Martin-HYMGZT,
	Author = "Todd M. Martin and Paul Harten and Douglas M. Young and Eugene N. Muratov and Alexander Golbraih and Hao Zhu and Alexander Tropsha",
	Title = "{Does rational selection of training and test sets improve the outcome of QSAR modeling?}",
	Journal = "J. Chem. Inf. Model.",
	Volume = "52",
	Pages = "2570–2578",
	Note = "The general answer is no. Noel O'Boyle also blogged about this (http://baoilleach.blogspot.nl/2012/10/a-non-random-method-to-improve-your.html).",
	collection = "cheminformatics",
	doi = "10.1021/ci300338w",
	localfile = "cheminformatics/2012 - Does rational selection of training and test sets improve the outcome of QSAR modeling?.pdf",
	rating = "3",
	read = "2013-01-10",
	year = 2012
}

@Article{2012-Martin-Muchmore,
	Author = "Yvonne C. Martin and Steven W. Muchmore",
	Title = "{Frozen out: molecular modeling in the age of cryocrystallography}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "91–92",
	Note = "Page 91: (...) the inherent flexibility of the protein structure, and its energy landscape, is not readily apparent from the seductive molecular graphics rendering of crystallographic results.",
	collection = "proteins",
	doi = "10.1007/s10822-011-9537-7",
	keywords = "cryocrystallography; flexibility",
	localfile = "proteins/2012 - Frozen out: molecular modeling in the age of cryocrystallography.pdf",
	rating = "2",
	read = "2013-06-28",
	year = 2012
}

@Article{2012-Phadungsukanan-KTM,
	Author = "Weerapong Phadungsukanan and Markus Kraft and Joe A. Townsend and Peter Murray-Rust",
	Title = "{The semantics of chemical markup language (CML) for computational chemistry: CompChem}",
	Journal = "J. Cheminf.",
	Volume = "4",
	Pages = "15",
	collection = "cheminformatics",
	doi = "10.1186/1758-2946-4-15",
	keywords = "parsing",
	localfile = "cheminformatics/2012 - The semantics of chemical markup language (CML) for computational chemistry: CompChem.pdf",
	rating = "2",
	read = "2014-01-28",
	year = 2012
}

@Article{2012-Rabinovich-ABV,
	Author = "Mikhail I. Rabinovich and Valentin S. Afraimovich and Christian Bick and Pablo Varona",
	Title = "{Information flow dynamics in the brain}",
	Journal = "Physics of Life Reviews",
	Volume = "9",
	Pages = "51–73",
	Note = "The math is not very clear, but provides a good overview and entry points to more detailed literature.",
	collection = "neuroscience",
	doi = "10.1016/j.plrev.2011.11.002",
	keywords = "information creation; information flow; mental disorders; heteroclinic channel",
	localfile = "neuroscience/2012 - Information flow dynamics in the brain.pdf",
	rating = "2",
	read = "2013-10-05",
	year = 2012
}

@Article{2012-Rarey,
	Author = "Matthias Rarey",
	Title = "{Some thoughts on the 'A' in computer-aided molecular design}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "113–114",
	Note = "Comments on the simplicity/complexity of molecular design, automation and the need for understanding intermolecular interactions.",
	collection = "cheminformatics",
	doi = "10.1007/s10822-011-9507-0",
	keywords = "automation; noncovalent interactions",
	localfile = "cheminformatics/2012 - Some thoughts on the 'A' in computer-aided molecular design.pdf",
	rating = "1",
	read = "2013-06-28",
	year = 2012
}

@Article{2012-Schneider,
	Author = "GIsbert Schneider",
	Title = "{Designing the molecular future}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "115–120",
	Note = "Page 117: We must not forget that our understanding of the physical forces governing ligand-receptor interaction is incomplete, and gaining a decimal point in computational precision is meaningless if insufficient models are used. Page 118: Structural novelty combined with synthetic feasability might be more important than actual bioactivity, which can often be increased by means of medicinal chemistry. (...) The primary aim of de novo design tools is to fuel the creativity of chemistry by making surprising and innovative suggestions.",
	collection = "cheminformatics",
	doi = "10.1007/s10822-011-9485-2",
	keywords = "drug design",
	localfile = "cheminformatics/2012 - Designing the molecular future.pdf",
	rating = "2",
	read = "2013-08-20",
	year = 2012
}

@Article{2012-Shumilin-CCJHLJM,
	Author = "Igor A. Shumilin and Marcin Cymborowski and Olga Chertihin and Kula N. Jha and John C. Herr and Scott A. Lesley and Andrzej Joachimiak and Wladek Minor",
	Title = "{Identification of unknown protein function using metabolite cocktail screening}",
	Journal = "Structure",
	Volume = "20",
	Pages = "1–11",
	collection = "proteins",
	doi = "10.1016/j.str.2012.07.016",
	keywords = "protein function",
	localfile = "proteins/2012 - Identification of unknown protein function using metabolite cocktail screening.pdf",
	rating = "2",
	read = "2013-08-02",
	year = 2012
}

@Article{2012-Singh-YBKK,
	Author = "Gurpreet Singh and Kevin G. Yager and Brian Berry and Ho-Cheol Kim and Alamgir Karim",
	Title = "{Gradient soft-shear for highly oriented block coplymer thin films}",
	Journal = "ACS Nano",
	Volume = "6",
	Number = "11",
	Pages = "10335–10342",
	Note = "This one describes an indirect use of thermal fields on BCP films.",
	collection = "block copolymers",
	doi = "10.1021/nn304266f",
	keywords = "alignment; soft shear; thermal fields; thin films",
	localfile = "block copolymers/2012 - Dynamic thermal fieldp-induced gradient soft-shear for highly oriented block copolymer thin films.pdf",
	methods = "AFM, CZA-SS, SAXS",
	rating = "2",
	read = "2013-09-10",
	systems = "PS-PMMA",
	year = 2012
}

@Article{2012-Singh-YSKBK,
	Author = "Gurpreet Singh and Kevin G. Yager and Detlef-M. Smilgies and Manish M. Kulkarni and David G. Bucknall and Alamgir Karim",
	Title = "{Tuning molecular relaxation for vertical orientation in cylindrical block copolymer films via sharp dynamic zone annealing}",
	Journal = "Macromolecules",
	Volume = "45",
	Pages = "7107–7117",
	Note = "Focuses on on thermal field profile (sharp for vertical standing cylinders, broad for parallel ones); also, different substrates.",
	collection = "block copolymers",
	doi = "10.1021/ma301004j",
	keywords = "alignment; thermal fields; thin films",
	localfile = "block copolymers/2012 - Tuning molecular relaxation for vertical orientation in cylindrical block copolymer films via sharp dynamic zone annealing.pdf",
	methods = "AFM, CZA, SAXS",
	rating = "2",
	read = "2013-09-10",
	systems = "PS-PMMA",
	year = 2012
}

@Article{2012-Stouch,
	Author = "Terry R. Stouch",
	Title = "{The errors of our ways: takign account of error in computer-aided drug design to build confidence intervals for our next 25 years}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "125–124",
	Note = "Several notable rough numbers inside. Page 127: (...) a difference of less than 6 kcal/mol in binding energy. The entire drug design effort operates in this range of energy. (...) The key numbers to remember as important goals are 6 and 0.5 kcal/mol, the total range of interest and the smallest unit of action.",
	collection = "cheminformatics",
	doi = "10.1007/s10822-012-9541-6",
	keywords = "error analysis; docking",
	localfile = "cheminformatics/2012 - The errors of our ways: taking account of error in computer-aided drug design to build confidence intervals for our next 25 years.pdf",
	rating = "3",
	read = "2013-09-26",
	year = 2012
}

@Article{2012-Woltosz,
	Author = "Walter S. Woltosz",
	Title = "{If we designed airplanes like we design drugs...}",
	Journal = "J. Comput.-Aided Mol. Des.",
	Volume = "26",
	Pages = "159–163",
	Note = "Page 161: (...) the vast number of possible interactions among atoms within molecules and between molecules and their environments make it highly unlikely that humankind will derive purely mechanistic (and quantum) methods for predicting most properties from structure with experimental accuracy in the forseeable future.",
	collection = "cheminformatics",
	doi = "10.1007/s10822-011-9490-5",
	localfile = "cheminformatics/2012 - If we designed airplanes like we design drugs....pdf",
	rating = "2",
	read = "2012-10-03",
	year = 2012
}

@Article{2013-Berry-SKK,
	Author = "Brian C. Berry and Gurpreet Singh and Ho-Cheol Kim and Alamgir Karim",
	Title = "{Highly aligned block copolymer thin films by synergistic coupling of static graphoepitaxy and dynamic thermal annealing fields}",
	Journal = "ACS Macro Lett.",
	Volume = "2",
	Pages = "346–350",
	Note = "Perhaps suggests the it will be necessary to couple more than two promotors of alignment in order to make BCP patterns industrially viable.",
	collection = "block copolymers",
	doi = "10.1021/mz400054y",
	keywords = "alignment; graphoepitaxy, thermal fields; thin films",
	localfile = "block copolymers/2013 - Highly aligned block copolymer thin films by synergistic coupling of static graphoepitaxy and dynamic annealing fields.pdf",
	methods = "AFM, CZA",
	rating = "2",
	read = "2013-09-10",
	systems = "PS-PMMA",
	year = 2013
}

@Article{2013-Burke-Wagner,
	Author = "Kieron Burke and Lucas O. Wagner",
	Title = "{DFT in a nutshell}",
	Journal = "Int. J. Quantum Chem.",
	Volume = "113",
	Pages = "96–101",
	Note = "Very short summary of the main ideas of modern DFT, although maybe is not the best for beginners.",
	collection = "quantum chemistry",
	doi = "10.1002/qua.24259",
	keywords = "density functional theory",
	localfile = "quantum chemistry/2013 - DFT in a nutshell.pdf",
	rating = "2",
	read = "2013-01-06",
	year = 2012
}

@Article{2013-Frenkel,
	Author = "Daan Frenkel",
	Title = "{Simulations: the dark side}",
	Journal = "Eur. Phys. J. Plus",
	Volume = "128",
	Pages = "10",
	Note = "Discusses a number of aspects of simulations underrepresented in the literature, with some good statistical mechanics notes about barrier hieghts.",
	collection = "statistical mechanics",
	doi = "10.1140/epjp",
	keywords = "molecular dynamics; Monte Carlo; simulations; periodic boundaries; energy barriers",
	localfile = "statistical mechanics/2013 - Simulations: the dark side.pdf",
	rating = "3",
	read = "2013-08-14",
	year = 2013
}

@Article{2013-He-Chen,
	Author = "Zhaojian He and Shi-Jie Chen",
	Title = "{Quantifying Coulombic and solvent polarization-mediated forces between DNA helices}",
	Journal = "J. Phys. Chem. B",
	Pages = "7221–7227",
	collection = "nucleic acids",
	doi = "10.1021/jp4010955",
	keywords = "folding",
	localfile = "nucleic acids/2013 - Quantifying COulombic and solvent polarization forces between DNA helices.pdf",
	methods = "Born model",
	rating = "2",
	read = "2013-01-01",
	year = 2013
}

@Article{2013-Hinton-Salakhutdinov,
	Author = "G. E. Hinton and R. R. Salakhutdinov",
	Title = "{Reducing the dimensionality of data with neural networks}",
	Journal = "Science",
	Volume = "313",
	Pages = "504–507",
	collection = "informatics",
	doi = "10.1126/science.1127647",
	keywords = "neural network",
	localfile = "informatics/2013 - Reducing dimensionality of data with neural networks.pdf",
	rating = "2",
	read = "2015-02-05",
	year = 2013
}

@Article{2013-Kolodny-PSL,
	Author = "Rachel Kolodny and Leonid Pereyalavets and Abraham O. Samson and Michael Levitt",
	Title = "{On the universe of protein folds}",
	Journal = "Annu. Rev. Biophys.",
	Volume = "42",
	Pages = "559–582",
	Note = "Well written outline of the current world of folds.",
	collection = "protein structure",
	doi = "10.1146/annurev-biophys-083012-130432",
	localfile = "protein structure/2013 - On the universe of protein folds.pdf",
	rating = "2",
	read = "2013-06-02",
	year = 2013
}

@Article{2013-Persson-Kallberg,
	Author = "Bengt Persson and Yvonne Kallberg",
	Title = "{Classification and nomenclature of the superfamily of short-chain dehydrogenases/reductases (SDRs)}",
	Journal = "Chemico-Biological Interactions",
	Volume = "202",
	Pages = "111–115",
	Note = "Close to definitive SDR classification (number of families is saturating) with some technical discussion on the scheme",
	collection = "proteins",
	doi = "10.1016/j.cbi.2012.11.009",
	localfile = "proteins/2013 - Classification and nomenclature of the superfamily of short-chain dehydrogenases-reductases (SDRs).pdf",
	rating = "2",
	read = "2013-09-09",
	systems = "SDR",
	url = "http://www.sdr-enzymes.org",
	year = 2013
}

@Article{2013-Ridder-VV,
	Author = "Dirk De Ridder and Jan Verplaetse and Sven Vanneste",
	Title = "{The predictive brain and the 'free will' illusion}",
	Journal = "Front. Psychol.",
	Volume = "4",
	Number = "131",
	Note = "Intruiging comments about the evolutionary basis of the experience of free will.",
	collection = "neuroscience",
	doi = "10.3389/fpsyg.2013.00131",
	localfile = "neuroscience/2013 - The predictive brain and the 'free will' illusion.pdf",
	rating = "2",
	read = "2013-06-19",
	type = "Commentary",
	year = 2013
}

@Article{2013-Singh-BZYYCBK,
	Author = "Gurpreet Singh and Saurabh Betra and Ren Zhang and Hongyi Yuan and Kevin G. Yager and Miko Cakmak and Brian Berry and Alamgir Karim",
	Title = "{Large-scale roll-to-roll fabrication of vertically oriented block copolymer thin films}",
	Journal = "ACS Nano",
	Volume = "7",
	Number = "6",
	Pages = "5291–5299",
	Note = "Impressive demonstration of 70x1 ft sheets of hexagonally ordered BCP cylinders.",
	collection = "block copolymers",
	doi = "10.1021/nn401094s",
	keywords = "alignment; nanotechnology; thermal fields; thin films",
	localfile = "block copolymers/2013 - Large-scale roll-to-roll fabrication of vertically oriented block copolymer thin films.pdf",
	methods = "AFM, CZA-S",
	rating = "2",
	read = "2013-09-10",
	systems = "PS-PMMA",
	year = 2013
}

@Article{2013-Sponer-SMJBO,
	Author = "Jiří Šponer and Judit E. Šponer and Arnost Mladek and Petr Jurečka and Pavel Banas and Michal Otyepka",
	Title = "{Nature and magnitude of aromatic base stacking in DNA and RNA: quantum chemistry, molecular mechanics, and experiment}",
	Journal = "Biopolymers",
	Volume = "99",
	Number = "12",
	Pages = "978–988",
	Note = "Page 986: We suggest that to make real step forward requires to attempt stacking computations in the context of complete nucleic acids build blocks, i.e., with inclusion of the sugar-phosphate backbone.",
	collection = "molecular stacking",
	doi = "10.1002/bip.22322",
	keywords = "aromatic stacking",
	localfile = "molecular stacking/2013 - Nature and amgnitude of aromatic base stacking in DNA and RNA: quantum chemistry, molecular mechanics, and experiment.pdf",
	rating = "2",
	read = "2014-02-10",
	type = "Review",
	year = 2013
}

@Article{2013-Szegedy-ZSBEGF,
	Author = "Christian Szegedy and Wojciech Zaremba and Ilya Sutskever and Joan Bruna and Dumitru Erhan and Ian J. Goodfellow and Rob Fergus",
	Title = "{Intriguing properties of neural networks}",
	Journal = "ArXiv e-prints",
	archiveprefix = "arXiv",
	collection = "informatics",
	eprint = "1312.6199",
	keywords = "neural network",
	localfile = "informatics/2013 - Intruiging properties of neural networks.pdf",
	primaryclass = "cs.CV",
	rating = "2",
	read = "2014-02-08",
	url = "http://arxiv.org/abs/1312.6199",
	year = 2013
}

@Article{2013-Takahashi-OFYKWYITMKK,
	Author = "Sachiko Takahashi and Kazunori Ohta and Naoki Furubayashi and Bin Yan and Misako Koga and Yoshio Wada and Mitsugu Yamada and Koji Inaka and Hiroaki Tanaka and Hiroshi Miyoshi and Tomoyuki Kobayashi and Shigeki Kamigachi",
	Title = "{JAXA protein crystallization in space: ongoing improvements for growing high-quality crystals}",
	Journal = "J. Synchrotron Rad.",
	Volume = "20",
	Pages = "968–973",
	collection = "crystallography",
	doi = "10.1107/S0909049513021596",
	keywords = "protein crystallization; microgravity",
	localfile = "crystallography/2013 - JAXA protein crystallization in space: ongoing improvements for growing high-quality crystals.pdf",
	rating = "2",
	read = "2014-04-04",
	year = 2013
}

@Article{2014-Cardamone-HP,
	Author = "Salvatore Cardamone and Timothy J. Hughes and Paul L. A. Popelier",
	Title = "{Multipolar electrostatics}",
	Journal = "Phys. Chem. Chem. Phys.",
	Volume = "16",
	Pages = "10367",
	collection = "molecular electrostatics",
	doi = "10.1039/C3CP54829E",
	localfile = "molecular electrostatics/2014 - Multipolar electrostatics.pdf",
	rating = "2",
	read = "2014-09-10"
}

@Article{2014-Chwastyk-JC,
	Author = "Mateusz Chwastyk and Mariusz Jaskolski and Marek Cieplak",
	Title = "{Structure-based analysis of thermodynamic and mechanical properties of cavity-containing proteins - case study of plant pathogenesis-related proteins of class 10}",
	Journal = "FEBS Journal",
	Volume = "281",
	Pages = "416–429",
	Note = "(...) a novel algorithm, which involves placing spherical probes on a grid of points.",
	collection = "protein structure",
	doi = "10.1111/febs.12611",
	keywords = "cavity; protein",
	localfile = "protein structure/2014 - Structure-based analysis of thermodynamic and mechanical properties of cavity-containing proteins - case study of plant pathogenesis-related protein of class 10.pdf",
	rating = "1",
	read = "2014-01-24",
	url = "http://www.ifpan.edu.pl/~chwastyk/spaceball",
	year = 2014
}

@Article{2014-Dyguda-Kazimierowicz-RS,
	Author = "Edyta Dyguda-Kazimierowicz and Szczepan Roszak and W. Andrzej Sokalski",
	Title = "{Alkaline hydrolysis of organophosphorus pesticides: the dependence of the reaction mechanism on the incoming group conformation}",
	Journal = "J. Phys. Chem. B",
	Volume = "118",
	Pages = "7277–7289",
	collection = "molecular reactions",
	localfile = "molecular reactions/2014 - Alkaline hydrolysis of organophosphorous pesticides: the dependence of the reaction mechanism on the incoming group conformation.pdf",
	year = 2014
}

@Article{2014-Fresch-Remacle,
	Author = "Barbara Fresch and F. Remacle",
	Title = "{Atomistic account of structural and dynamical changes induced by small binders in the double helix of a short DNA}",
	Journal = "Phys. Chem. Chem. Phys.",
	Volume = "16",
	Pages = "14070–14082",
	collection = "nucleic acid intercalation",
	doi = "10.1039/c4cp01561d",
	keywords = "ethidium",
	localfile = "nucleic acid intercalation/2014 - Atomistic account of structural and dynamical changes induced by small binders in the double helix of a short DNA.pdf",
	methods = "MD",
	rating = "2",
	read = "2015-04-14",
	systems = "Hoaechst; ethidium",
	year = 2014
}

@Article{2014-Guss-McMahon,
	Author = "J. Mitchell Guss and Brian McMahon",
	Title = "{How to make deposition of images a reality}",
	Journal = "Acta Cryst. D",
	Volume = "70",
	Pages = "2520–2532",
	collection = "crystallography",
	doi = "10.1107/S1399004714005185",
	keywords = "diffraction images",
	localfile = "crystallography/2014 - How to make deposition of images a reality.pdf",
	rating = "2",
	read = "2014-10-29",
	year = 2014
}

@Article{2014-Jakobsen-Jensen,
	Author = "Sofie Jakobsen and Frank Jensen",
	Title = "{Systematic improvement of potential-derived atomic multipoles and redundancy of the electrostatic parameter space}",
	Journal = "J. Chem. Theory Comput.",
	Volume = "10",
	Pages = "5493–5504",
	collection = "molecular electrostatics",
	doi = "10.1021/ct500803r",
	keywords = "multipole moments; molecular electrostatic potential",
	localfile = "molecular electrostatics/2014 - Systematic improvement of potential-derived atomic multipoles and redundancy of the electrostatic parameter space.pdf",
	notes = "Anisotropic and polarization effects seem to be of similar importance for reproducing the MEP on the vdW surface. Added multipole moments on atoms can improve anisotropic the features. The number of atomic charges and moments necessary to reproduce the MEP within 5-10\% is only a fraction of the full set, which means the parameters space of population analyses is near-redundant.",
	rating = "3",
	read = "2015-04-22",
	year = 2014
}

@Article{2014-Kell-Goodacre,
	Author = "Douglas B. Kell and Royston Goodacre",
	Title = "{Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery}",
	Journal = "Drug Discovery Today",
	Volume = "19",
	Pages = "171–182",
	Note = "Page 173: (...) the increasing recognition that pharmaceutical drugs also get into and out of cells by 'hitchhiking' on such transporters, and not - to any significant extent - by passing though phospholipid bilayer portions of cellular membranes.",
	collection = "metabolism",
	doi = "10.1016/j.drudis.2013.07.014",
	keywords = "metabolomics",
	localfile = "metabolism/2014 - Metabolomics and systems pharmocology: why and how to model the human metabolic network for drug discover.pdf",
	rating = "2",
	read = "2014-04-30",
	year = 2014
}

@Article{2014-Khafizov-MAF,
	Author = "Kamil Khafizov and Carlos Madrid-Aliste and Steven Almo and Andras Fiser",
	Title = "{Trends in structural covreage of the protein universe and the impact of the Protein Structure Initiative}",
	Journal = "Proc. Natl. Acad. Sci.",
	Volume = "111",
	Number = "10",
	Pages = "3733–3738",
	collection = "protein structure",
	doi = "10.1073/pnas.1321614111",
	keywords = "protein structure",
	localfile = "protein structure/2014 - Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.pdf",
	rating = "2",
	read = "2014-04-04",
	year = 2014
}

@Article{2014-Kramer-SL,
	Author = "Christian Kramer and Alexander Spinn and Klaus R. Liedl",
	Title = "{Charge anisotropy: where atomic multipoles matter most}",
	Journal = "J. Chem. Theory Comput.",
	Volume = "10",
	Pages = "4488–4496",
	collection = "molecular electrostatics",
	localfile = {molecular electrostatics/2014 - Charge anisotropy: where atomic multipoles matter most.pdf},
	rating = "2",
	read = "2015-04-20",
	year = 2014
}

@Article{2014-Kroon-Batenburg-Helliwell,
	Author = "Loes M. J. Kroon-Batenburg and John R. Helliwell",
	Title = "{Experiences with making diffraction iamge data available: what metadata do we need to archive?}",
	Journal = "Acta Cryst. D",
	Volume = "70",
	Pages = "2502–2509",
	collection = "crystallography",
	doi = "10.1107/S1399004713029817",
	keywords = "diffraction image; data archiving",
	localfile = "crystallography/2014 - Experiences with making diffraction image data available: what metadata do we need to archive?.pdf",
	rating = "2",
	read = "2014-10-13",
	year = 2014
}

@Article{2014-Majorek-KCAM,
	Author = "Karolina A. Majorek and Misty L. Kuhn and Maksymilian Chruszcz and Wayne F. Anderson and Wladek Minor",
	Title = "{Double trouble - buffer selection and His-tag presence may be responsible for nonreproducibility of iomoedical experiments}",
	Journal = "Protein Sci.",
	Volume = "23",
	Pages = "1359-1368",
	collection = "proteins",
	doi = "10.1002/pro.2520",
	keywords = "reproducibility",
	localfile = {proteins/2014 - Double trouble - buffer selection and His-tag presence may be responsible for nonreproducibility of biomedical experiments.pdf},
	rating = "2",
	read = "2015-05-11",
	systems = "acetyltransferase; GNAT; polyhistidine; HEPES",
	year = 2014
}

@Article{2014-McPherson-Gavira,
	Author = "Alexander McPherson and Jose A. Gavira",
	Title = "{Introduction to protein crystallization}",
	Journal = "Acta Cryst. F",
	Volume = "70",
	Pages = "2–20",
	collection = "crystallography",
	doi = "10.1107/S2053230X13033141",
	keywords = "protein crystallography; protein crystallization",
	localfile = "crystallography/2014 - Introduction to protein crystallography.pdf",
	rating = "2",
	read = "2014-06-03",
	year = 2014
}

@Article{2014-Meyer-AMCMBGQBBA,
	Author = "Grischa R. Meyer and David Aragão and Nathan J. Mudie and Tom T. Caradoc-Davies and Sheena McGowan and Philip J. Bertling and David Groenewegen and Stevan M. Quenette and Charles S. Bond and Ashley M. Buckle and Steve Androulakis",
	Title = "{Operation of the Australian Store.Synchrotron for macromolecular crystallography}",
	Journal = "Acta. Cryst. D",
	Volume = "70",
	Pages = "2510–2519",
	collection = "crystallography",
	doi = "10.1107/S1399004714016174",
	keywords = "diffraction images",
	localfile = {crystallography/2014 - Operation of the Australian Store.Synchrotron for macromolecular crystallography.pdf},
	rating = "2",
	read = "2014-10-08",
	year = 2014
}

@Article{2014-Ouyang-CB,
	Author = "John F. Ouyang and Milan W. Cvitkovic and Ryan P. A. Bettens",
	Title = "{Trouble with the many-body expansion}",
	Journal = "J. Chem. Theory Comput.",
	Volume = "10",
	Pages = "3699–3707",
	collection = "molecular interactions",
	doi = "10.1021/ct500396b",
	localfile = {},
	methods = "BSSE; RHF; MBE; MP2",
	notes = "Rapid convergence of the four-body term of the MBE cannot be assumed, even if convergence appears to have occurred. It is best to use the full cluster basis set or at least AVTZ quality basis sets consistently.",
	rating = "3",
	read = "2015-04-17",
	systems = "water clustrs; (H2O)16",
	year = 2014
}

@Article{2014-Sevink-Fraaije,
	Author = "G. J. A. Sevink and J. G. E. M. Fraaije",
	Title = "{Efficient solvent-free dissipative particle dynamics for lipid bilayers}",
	Journal = "Soft Matter",
	Volume = "10",
	Pages = "5129–5146",
	collection = "lipid bilayers",
	doi = "10.1039/c4sm00297k",
	keywords = "implicit solvent; vesicles; liposomes",
	localfile = "lipid bilayers/2014 - Efficient solvent-free dissipative particle dynamics for lipid bilayers.pdf",
	methods = "DPD",
	rating = "2",
	read = "2014-10-10",
	year = 2014
}

@Article{2014-Terwilliger,
	Author = "Thomas C. Terwilliger",
	Title = "{Archiving raw crystallographic data}",
	Journal = "Acta. Cryst. D",
	Volume = "70",
	Pages = "2500–2501",
	collection = "crystallography",
	doi = "10.1107/S139900471402118X",
	keywords = "diffraction images",
	localfile = "crystallography/2014 - Archiving raw crystallographic data.pdf",
	rating = "2",
	read = "2014-10-06",
	year = 2014
}

@Article{2014-Terwilliger-Bricogner,
	Author = "Thomas C. Terwilliger and Gerard Bricogne",
	Title = "{Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data}",
	Journal = "Acta. Cryst. D",
	Volume = "70",
	Pages = "2533–2543",
	collection = "crystallography",
	doi = "10.1107/S1399004714017040",
	keywords = "protein data bank; data management; protein crystallography; diffraction images",
	localfile = "crystallography/2014 - Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data.pdf",
	rating = "3",
	read = "2014-10-09",
	year = 2014
}

@Article{2014-Tong-Sibener,
	Author = "Qjanqian Tong and S. J. Sibener",
	Title = "{Electric-field-induced control and switching of block copolymer dmain orientations in nanoconfined channel architectures}",
	Journal = "J. Phys. Chem. C",
	Volume = "118",
	Pages = "13752–13756",
	collection = "block copolymer nanocomposites",
	doi = "10.1021/jp505677f",
	keywords = "electric field; switching; degenerate structures",
	localfile = "block copolymer nanocomposites/2014 - Electric-field-induced control and switching of block copolymer domain orientations in nanoconfined channel architectures.pdf",
	rating = "2",
	read = "2015-04-12",
	year = 2014
}

@Article{2014-Vinyals-KKPSH,
	Author = "Oriol Vinyals and Lukasz Kaiser and Terry Koo and Slav Petrov and Ilya Sutskever and Geoffrey Hinton",
	Title = "{Grammar as a foreign language}",
	Journal = "ArXiv e-prints",
	archiveprefix = "arXiv",
	collection = "informatics",
	eprint = "1412.7449",
	keywords = "neural network; deep learning",
	localfile = "informatics/2014 - Grammar as a foreign language.pdf",
	primaryclass = "cs.CL",
	rating = "2",
	read = "2015-01-20",
	year = 2014
}

@Article{2014-Zheng-CCCMSM,
	Author = "Heping Zheng and Mahendra D. Chordia and David R. Cooper and Maksymilian Chruszcz and Peter Müller and George M. Sheldrick and Wladek Minor",
	Title = "{Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server}",
	Journal = "Nature Protocols",
	Volume = "9",
	Number = "1",
	Pages = "156–170",
	collection = "crystallography",
	doi = "10.1038/nprot.2013.172",
	keywords = "metal; bond valence",
	localfile = "crystallography/2014 - Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server.pdf",
	rating = "2",
	read = "2014-05-15",
	year = 2014
}

@Article{2014-Zheng-HZWM,
	Author = "Heping Zheng and Jing Hou and Matthew D. Zimmerman and Alexander Wlodawer and Wladek Minor",
	Title = "{The future of crystallography in drug discovery}",
	Journal = "Expert Opin. Drug Discov.",
	Volume = "9",
	Number = "2",
	Pages = "125–137",
	collection = "crystallography",
	doi = "10.1517/17460441.2014.872623",
	keywords = "big data; protein crystallography",
	localfile = "crystallography/2014 - The future of crystallography in drug discovery.pdf",
	rating = "2",
	read = "2014-03-23",
	year = 2014
}

@Article{2015-Joels-LE,
	Author = "Marian Joëls and Monica Di Luca and Barry J. Everitt",
	Title = "{Neuro opinion: reforming the academic system is a joint responsibility}",
	Journal = "Eur. J. Neurosci.",
	collection = "neuroscience",
	doi = "10.1111/ejn.12886",
	localfile = "neuroscience/2015 - Neuro opinion: reforming the academic system is a joint responsibility.pdf",
	read = "2015-04-28",
	type = "Opinion",
	year = 2015
}

@Article{2018-Kasparov,
	Author = "Garry Kasparov",
	Title = "{Chess, a Drosophila of reasoning}",
	Journal = "Science",
	Volume = "362",
	Pages = "1087",
	collection = "machine learning",
	doi = "10.1126/science.aaw2221",
	keywords = "chess; deep learning",
	localfile = {machine learning/2018 - Chess, a Drosophila o reasoning.pdf},
	rating = "3",
	read = "2018-12-27",
	type = "Editorial",
	year = 2018
}

@Article{2018-Silver-HSALGLSKGLSH,
	Author = "David Silver and Thomas Hubert and Julian Schrittweiser and Ioannis Antonoglou and Matthew Lai and Arthur Guez and Marc lanctot and Laurent Sifre and Dharshan Kumaran and Thore Graepel and Timothy Lillicrap and Karen Simonyan and Demis Hassabis",
	Title = "{A general reinforcement learning algorithm that masters Chess, Shogi and Go through self-play}",
	Journal = "Science",
	Volume = "362",
	Pages = "1140-1144",
	collection = "machine learning",
	doi = "10.1126/science.aar6404",
	keywords = "chess; deep learning",
	localfile = {machine learning/2018 - A general reinforcement learning algorithm that masters chess, shogi and Go through self-play.pdf},
	rating = "3",
	read = "2018-12-28",
	year = 2018
}

@Article{2019-Grabowski-CPOSCM,
    Author = "Marek Grabowski and Marcin Cymborowski and Przymsław J. Porębski and Tomasz Osiński and Ivan G. Shabalin and David R. Cooper and Władek Minor",
    Title = "{The Integrated Resource for Reproducibility in Macromolecular Crystallography: experiences of the first four years}",
    Journal = "Structural Dynamics",
    Volume = "6",
    Pages = "064301",
    collection = "crystallography",
    doi = "10.1063/1.5128672",
    rating = "2",
    read = "2019-11-27",
    year = 2019
}

@Book{book-1958-Dirac,
	Author = "Paul A. M. Dirac",
	Title = "{The Principles of Quantum Mechanics}",
	Publisher = "Clarendon",
	Edition = "4",
	collection = "quantum physics",
	localfile = {},
	year = 1958
}

@Book{book-1987-Buckingham,
	Author = "A. David Buckingham",
	Editor = "B. Pullman",
	Title = "{Intermolecular Interactions: From Diatomics to Biopolymers}",
	Publisher = "John Wiley and Sons",
	Address = "New York",
	collection = "molecular interactions",
	localfile = {},
	year = 1987
}

@Book{book-1994-Feynman,
	Author = "Richard Feynman",
	Title = "{The Character of Physical Law}",
	collection = "physics",
	isbn = "0-679-60127-9",
	localfile = {},
	published = "Modern Library",
	rating = "3",
	read = "2010",
	year = 1994
}

@Book{book-1997-Gould,
	Author = "Stephen Jay Gould",
	Title = "{Questioning the Millennium}",
	Publisher = "Harmony Books",
	collection = "philosophy",
	isbn = "0-609-60541-0",
	localfile = {},
	read = "2015-05-05",
	year = 1997
}

@Book{book-1998-Lehmann-Abrera,
	Author = "Erich L. Lehmann and H. J. M. D'Abrera",
	Title = "{Nonparametrics: Statistical Methods Based on Ranks}",
	Publisher = "Prentice-Hall",
	Address = "Upper Saddle River, N.J.",
	Edition = "rev. 1st ed",
	collection = "statistics",
	localfile = {},
	year = 1998
}

@Book{book-2001-Adams,
	Author = "James L. Adams",
	Title = "{Conceptual Blockbusting}",
	Publisher = "Perseus Publishing",
	Edition = "4",
	collection = "psychology",
	localfile = {}
}

@Book{book-2002-Onuki,
	Author = "Akira Onuki",
	Title = "{Phase Transition Dynamics}",
	Publisher = "Cambridge University Press",
	abstract = "Phase transition dynamics is centrally important to condensed matter physics. This book treats a wide variety of topics systematically by constructing time-dependent Ginzburg-Landau models for various systems in physics, metallurgy and polymer science. Beginning with a summary of advanced statistical-mechanical theories including the renormalization group theory, the book reviews dynamical theories, and covers the kinetics of phase ordering, spinodal decomposition, and nucleation in depth. The phase transition dynamics of real systems are discussed, treating interdisciplinary problems in a unified manner. Topics include supercritical fluid dynamics, stress-diffusion coupling in polymers, and mesoscopic dynamics at structural phase transitions in solids. Theoretical and experimental approaches to shear flow problems in fluids are reviewed. Phase Transition Dynamics provides a comprehensive account, building on the statistical mechanics of phase transitions covered in many introductory textbooks. It will be essential reading for researchers and advanced graduate students in physics, chemistry, metallurgy and polymer science.",
	collection = "phase transitions",
	isbn = "9780521572934",
	localfile = {},
	year = 2002
}

@Book{book-2004-Cramer,
	Author = "Christopher J. Cramer",
	Title = "{Essentials of Computational Chemistry}",
	Edition = "2",
	collection = "quantum chemistry",
	isbn = "0-470-09181-9",
	localfile = {},
	year = 2004
}

@Book{book-2005-Fogel,
	Author = "K. Fogel",
	Title = "{Producing Open Source Software}",
	Publisher = "O'Reilly",
	collection = "software",
	localfile = {},
	year = 2005
}

@Book{book-2006-Ariga-Kunitake,
	Author = "Katsuhiko Ariga and Toyoki Kunitake",
	Title = "{Supramolecular Chemistry}",
	Publisher = "Springer",
	collection = "molecular interactions",
	isbn = "978-3-540-01298-6",
	localfile = {},
	year = 2006
}

@Book{book-2006-Lowe-Peterson,
	Author = "John P. Lowe and Kirk A. Peterson",
	Title = "{Quantum Chemistry}",
	Publisher = "Elsevier",
	Edition = "3",
	collection = "quantum chemistry",
	isbn = "978-0-12-457551-6",
	localfile = {},
	year = 2006
}

@Book{book-2007-Gould,
	Author = "Steven J. Gould",
	Title = "{Punctuated Equilibrium}",
	Publisher = "Harvard University Press",
	collection = "evolution",
	isbn = "978-0674024441",
	localfile = {},
	rating = "3",
	year = 2007
}

@Book{book-2007-Piela,
	Author = "Lucjan Piela",
	Title = "{Ideas of Quantum Chemistry}",
	Publisher = "Elsevier",
	collection = "quantum chemistry",
	isbn = "978-0-444-52227-6",
	localfile = {},
	year = 2007
}

@Book(book-2007-Pinker,
	Author = "Steven Pinker",
	Title = "{The Language Instinct}",
	Publisher = "HarperCollins",
	collection = "neuroscience",
	isbn = "978-0-06-133646-1",
	localfile = {},
	rating = "3",
    subtitle = "{How The Mind Creates Language}",
    edition = "Modern Classics",
	year = 2007
}

@Book{book-2008-Keller,
	Author = "Timothy Keller",
	Title = "{The Reason for God}",
	Publisher = "Riverhead Books",
	collection = "philosophy",
	isbn = "1594483493",
	localfile = {},
	rating = "2",
	year = 2008
}

@Book{book-2008-Ulin,
	Author = "David L. Ulin",
	Title = "{The Lost Art of Reading}",
	Publisher = "Sasquatch Books",
	collection = "psychology",
	isbn = "978-1-57061-670-9",
	localfile = {},
	rating = "3",
	read = "2018",
	subtitle = "{Why Books Matter in a Distracted Time}",
	year = 2010
}

@Book{book-2016-Christian-Griffiths,
	Author = "Brian Christian and Tom Griffiths",
	Title = "{Algorithms to Live By}",
	Publisher = "Henry Holt and Co.",
	collection = "psychology",
	isbn = "978-1-627-79036-9",
	localfile = {},
	rating = "3",
	read = "2018",
	subtitle = "{The Computer Science of Human Decisions}",
	year = 2016
}

@Book{book-2018-Pearl-Mackenzie,
	Author = "JudeaPearl and Dana Mackenzie",
    Title = "{The Book of Why}",
    Publisher = "Basic Books",
    collection = "machine learning",
    isbn = "978-0-465-09760-9",
    localfile = {},
    rating = "3",
    read = "2018",
    subtitle = "{The New Science of Cause and Effect}",
    year = 2018
}

@InCollection{1988-Dennett,
    Author = "Daniel Dennett",
    Title = "{Quning qualia}",
    BookTitle = "{Consciousness in Modern Science}",
    Publisher = "Oxford University Press",
    Editor = "A. Marcel and E. Bisiach",
    collection = "philosophy",
    url = "http://cogprints.org/254/1/quinqual.htm",
    urldate = {2019-10-20},
    localfile = "philosphy/1988 - Quning qualia.html",
    year = 1988
}

@InCollection{chapter-1999-Giannelis-KM,
	Author = "Emmanuel P. Giannelis and Ramanan Krishnamoorti and E. Manias",
	Title = "{Polymer-Silicate Nanocomposites: Model Systems for Confined Polymers and Polymer Brushes}",
	BookTitle = "{Polymer-Silicate Nanocomposites: Model Systems for Confined Polymers and Polymer Brushes}",
	Publisher = "Springer Berlin / Heidelberg",
	Series = "{Advances in Polymer Science}",
	Pages = "107–147",
	collection = "polymer nanocomposites",
	doi = "10.1007/3-540-69711-X_3",
	keywords = "polymer nanocomposites",
	localfile = "polymer nanocomposites/1999 - Polymer-silicate nanocomposites: model systems for confined polymers and polymer brushes.pdf",
	year = 1999
}

@InCollection{chapter-1999-Sokalski-KGDS,
	Author = "W. Andrzej Sokalski and Paweł Kędzierski and Jolanta Grembecka and Paweł Dziekoński and Krzysztof Strasburger",
	Title = "{Theoretical tools for analysis and modelling electrostatic effects in biomolecules}",
	BookTitle = "{Computational Molecular Biology, 8}",
	Publisher = "Elsevier",
	Editor = "Jerzy Leszczyński",
	Pages = "369–396",
	abstract = "(Excerpt) The precise knowledge of the physical nature of major stabilization energy components involved in interactions between biomolecules is essential for com- plete understanding of their biological function and derivation of more approx- imate theoretical methods useful in modelling complex biological systems and processes. Unfortunately, until recently all nonempirical decompositions of intermolecular interaction energy were restricted to small systems not ex- ceeding 100-200 AO’s, which limited exploration of the nature of interactions in larger molecular aggregates of biological importance.",
	collection = "molecular electrostatics",
	doi = "10.1016/S1380-7323(99)80085-5",
	isbn = "978-0-444-50030-4",
	localfile = "molecular electrostatics/1999 - Theoretical tools for analysis and modelling electrostatic effects in biomolecules.pdf",
	url = "http://www.elsevier.com/wps/find/bookdescription.cws_home/620268/description",
	year = 1999
}

@InBook{chapter-2007-Moszynski,
	Author = "Robert Moszyński",
	Editor = "W. Andrzej Sokalski and Jerzy Leszczyński",
	Title = "{Theory of Iintermolecular Forces: an Introductory Account}",
	Chapter = "1",
	Pages = "1–152",
	Publisher = "Springer",
	Volume = "4",
	Series = "{Challanges and Advances in Computational Chemistry and Physics}",
	abstract = "Modern theory of intermolecular forces is reviewed. The concept of the interaction potential is introduced within the Born-Oppenheimer separation of the electronic and nuclear motions. Various supermolecule approaches for the calculation of accurate interaction potentials are discussed. Perturbation theory of intermolecular forces is reviewed in great details. The problem of symmetry-adaptation is explained and a general symmetry-adapted perturbation theory is formulated. Convergence properties of various symmetry-adapted expansions are surveyed, and illustrated on several examples. Physical interpretation of the interaction potential in terms of the four fundamental interaction components: electrostatics, induction, dispersion, and exchange-repulsion is thoroughly exposed. Many-electron formulation of the symmetry-adapted perturbation theory in both the wave function and density functional approaches is introduced. One-center and multicenter multipole expansions neglecting the charge-overlap effects, as well as the bipolar expansion accounting for these effects are discussed. The relation of some supermolecule approaches with the perturbation theory of intermolecular forces is brieﬂy sketched. Approximate models that can be deduced from the rigorous theory of intermolecular forces, and applicable to the interactions of large systems are discussed. Finally, perturbation theory of nonadditive interactions in trimers and of the collision-induced electric properties of binary collisional complexes is also reviewed. The theory part is completed by an exposition of methods needed on the route from intermolecular potentials and collision-induced properties to physically measurable quantities such as the Raman spectra, rovibrational spectra, scattering cross sections, as well as thermodynamic, dielectric, and refractive properties of dilute gases. The present status of symmetry-adapted perturbation theory applied to the calculations of state-of-the-art ab initio potential energy surfaces and collision-induced properties is presented, and illustrated by means of applications to rovibrational spectra of Van der Waals molecules, scattering cross sections and pressure broadening coefﬁcients, collision-induced Raman spectra of atomic gases, solvation processes, and thermodynamic, dielectric, and refractive properties of dilute gases. Theoretical results are compared with high accuracy experimental data.",
	collection = "molecular interactions",
	isbn = "978-1-4020-5362-6",
	localfile = "molecular interactions/2007 - Theory of intermolecular forces: an introductory account.pdf",
	year = 2007
}

@InProceedings{proceedings-2008-Sevink-Fraaije,
	Author = "G. J. Agur Sevink and Johannes G. E. M. Fraaije",
	Title = "{Modelling complex systems in full detail: a new approach}",
	BookTitle = "{Complex Systems: 5th International Workshop on Complex Systems}",
	Volume = "982",
	Series = "{AIP Conference Proceedings}",
	Pages = "491–496",
	abstract = "We introduce a new hybrid method as a merger of two well-established mesoscopic methods, dynamic density functional theory (DDFT) and Brownian Dynamics (BD), by defining a coupling between particles and fields. The method is particularly suited for the efficient computational modelling of complex systems with a large variety of constituents. We discuss the potential of this method for typical systems and show the results of simulations for a nanoparticle/polymer mixture.",
	collection = "block copolymer nanocomposites",
	doi = "10.1063/1.2897843",
	keywords = "block copolymers; mesophase transitions; nanospheres; polymer nanocomposites",
	localfile = "block copolymers/2008 - Modelling complex systems in full detail: a new approach.pdf",
	methods = "DDFT/BD",
	year = 2008
}

@InProceedings{proceedings-2009-Behnel-BS,
	Author = "Stefan Behnel and Robert W. Bradshaw and Dag S. Seljebotn",
	Title = "{Cython tutorial}",
	BookTitle = "{Proceedings of the 8th Python in Science Conference (SciPy 2009)}",
	Pages = "4–14",
	collection = "informatics",
	localfile = "informatics/2009 - Cython tutorial.pdf",
	year = 2009
}

@InProceedings{proceedings-2009-Seljebotn,
	Author = "Dag S. Seljebotn",
	Title = "{Fast numerical computations with Cython}",
	BookTitle = "{Proceedings of the 8th Python in Science Conference (SciPy 2009)}",
	Pages = "15–22",
	collection = "informatics",
	localfile = "informatics/2009 - Fast numerical computation with Cython.pdf",
	year = 2009
}

@InProceedings{proceedings-2013-Hall-Huan,
	Author = "Aaron S. Hall and Jun Huan",
	Title = "{KUChemBio: a repository of computational chemical biology data sets}",
	BookTitle = "{2013 IEEE International Conference on Big Data}",
	Pages = "37–42",
	collection = "cheminformatics",
	localfile = "cheminformatics/2013 - KUChemBio: a repository of computational chemical biology data sets.pdf",
	year = 2013
}

@InProceedings{proceedings-2014-Hinton-VD,
	Author = "Geoffrey Hinton and Oriol Vinyals and Jeff Dean",
	Title = "{Distilling the knowledge in a neural network}",
	BookTitle = "{Deep Learning and Representation Learning Workshop: NIPS 2014}",
	Number = 65,
	collection = "informatics",
	localfile = "informatics/2014 - Distilling knowledge in a neural network.pdf",
	year = 2014
}

@InProceedings{proceedings-2015-Helland,
	Author = "Pat Helland",
	Title = "{Immutability changes everything}",
	BookTitle = "{Conference on Innovative Data Systems Research (CIDR) 2015}",
	collection = "informatics",
	localfile = "informatics/2015 - Immutability changes everythings.pdf",
	year = 2015
}

@PhdThesis{thesis-2001-Kedzierski,
	Author = "Paweł Kędzierski",
	Title = "{Study of the nature of interactions in the active sites of enzymes}",
	School = "Wrocław University of Technology",
	collection = "enzymes",
	localfile = {},
	year = 2001
}

@PhdThesis{thesis-2005-Lyakhova,
	Author = "Kateryna S. Lyakhova",
	Title = "{Mesoscale modelling of block copolymers under external fields}",
	collection = "block copolymers",
	keywords = "block copolymers; electric fields; mesophase transitions; thin films",
	localfile = "_theses/Lyakhova, K. S. - Mesoscale modelling of block copolymers under external fields.pdf",
	methods = "DDFT",
	year = 2005
}

license: MIT

license_type: permissive

extension: bib


text:
@inproceedings{W14-1601,
 address = {Ann Arbor, Michigan},
 author = {S{\o}gaard, Anders  and  Johannsen, Anders  and  Plank, Barbara  and  Hovy, Dirk  and  Mart\'{i}nez Alonso, H\'{e}ctor},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {1--10},
 publisher = {Association for Computational Linguistics},
 title = {What's in a p-value in NLP?},
 year = {2014}
}

@inproceedings{W14-1602,
 address = {Ann Arbor, Michigan},
 author = {Mason, Rebecca  and  Charniak, Eugene},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {11--20},
 publisher = {Association for Computational Linguistics},
 title = {Domain-Specific Image Captioning},
 year = {2014}
}

@inproceedings{W14-1603,
 address = {Ann Arbor, Michigan},
 author = {Berzak, Yevgeni  and  Reichart, Roi  and  Katz, Boris},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {21--29},
 publisher = {Association for Computational Linguistics},
 title = {Reconstructing Native Language Typology from Foreign Language Usage},
 year = {2014}
}

@inproceedings{W14-1604,
 address = {Ann Arbor, Michigan},
 author = {Al-Badrashiny, Mohamed  and  Eskander, Ramy  and  Habash, Nizar  and  Rambow, Owen},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {30--38},
 publisher = {Association for Computational Linguistics},
 title = {Automatic Transliteration of Romanized Dialectal Arabic},
 year = {2014}
}

@inproceedings{W14-1605,
 address = {Ann Arbor, Michigan},
 author = {Barlacchi, Gianni  and  Nicosia, Massimo  and  Moschitti, Alessandro},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {39--48},
 publisher = {Association for Computational Linguistics},
 title = {Learning to Rank Answer Candidates for Automatic Resolution of Crossword Puzzles},
 year = {2014}
}

@inproceedings{W14-1606,
 address = {Ann Arbor, Michigan},
 author = {Modi, Ashutosh  and  Titov, Ivan},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {49--57},
 publisher = {Association for Computational Linguistics},
 title = {Inducing Neural Models of Script Knowledge},
 year = {2014}
}

@inproceedings{W14-1607,
 address = {Ann Arbor, Michigan},
 author = {Andreas, Jacob  and  Klein, Dan},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {58--67},
 publisher = {Association for Computational Linguistics},
 title = {Grounding Language with Points and Paths in Continuous Spaces},
 year = {2014}
}

@inproceedings{W14-1608,
 address = {Ann Arbor, Michigan},
 author = {Rei, Marek  and  Briscoe, Ted},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {68--77},
 publisher = {Association for Computational Linguistics},
 title = {Looking for Hyponyms in Vector Space},
 year = {2014}
}

@inproceedings{W14-1609,
 address = {Ann Arbor, Michigan},
 author = {Passos, Alexandre  and  Kumar, Vineet  and  McCallum, Andrew},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {78--86},
 publisher = {Association for Computational Linguistics},
 title = {Lexicon Infused Phrase Embeddings for Named Entity Resolution},
 year = {2014}
}

@inproceedings{W14-1610,
 address = {Ann Arbor, Michigan},
 author = {Levy, Omer  and  Dagan, Ido  and  Goldberger, Jacob},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {87--97},
 publisher = {Association for Computational Linguistics},
 title = {Focused Entailment Graphs for Open IE Propositions},
 year = {2014}
}

@inproceedings{W14-1611,
 address = {Ann Arbor, Michigan},
 author = {Gupta, Sonal  and  Manning, Christopher},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {98--108},
 publisher = {Association for Computational Linguistics},
 title = {Improved Pattern Learning for Bootstrapped Entity Extraction},
 year = {2014}
}

@inproceedings{W14-1612,
 address = {Ann Arbor, Michigan},
 author = {Sil, Avirup  and  Cucerzan, Silviu-Petru},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {109--118},
 publisher = {Association for Computational Linguistics},
 title = {Towards Temporal Scoping of Relational Facts based on Wikipedia Data},
 year = {2014}
}

@inproceedings{W14-1613,
 address = {Ann Arbor, Michigan},
 author = {Xiao, Min  and  Guo, Yuhong},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {119--129},
 publisher = {Association for Computational Linguistics},
 title = {Distributed Word Representation Learning for Cross-Lingual Dependency Parsing},
 year = {2014}
}

@inproceedings{W14-1614,
 address = {Ann Arbor, Michigan},
 author = {Tiedemann, J\"{o}rg  and  Agi\'{c}, \v{Z}eljko  and  Nivre, Joakim},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {130--140},
 publisher = {Association for Computational Linguistics},
 title = {Treebank Translation for Cross-Lingual Parser Induction},
 year = {2014}
}

@inproceedings{W14-1615,
 address = {Ann Arbor, Michigan},
 author = {Garrette, Dan  and  Dyer, Chris  and  Baldridge, Jason  and  Smith, Noah A.},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {141--150},
 publisher = {Association for Computational Linguistics},
 title = {Weakly-Supervised Bayesian Learning of a CCG Supertagger},
 year = {2014}
}

@inproceedings{W14-1616,
 address = {Ann Arbor, Michigan},
 author = {Feng, Yang  and  Cohn, Trevor  and  Du, Xinkai},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {151--159},
 publisher = {Association for Computational Linguistics},
 title = {Factored Markov Translation with Robust Modeling},
 year = {2014}
}

@inproceedings{W14-1617,
 address = {Ann Arbor, Michigan},
 author = {Irvine, Ann  and  Callison-Burch, Chris},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {160--170},
 publisher = {Association for Computational Linguistics},
 title = {Hallucinating Phrase Translations for Low Resource MT},
 year = {2014}
}

@inproceedings{W14-1618,
 address = {Ann Arbor, Michigan},
 author = {Levy, Omer  and  Goldberg, Yoav},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {171--180},
 publisher = {Association for Computational Linguistics},
 title = {Linguistic Regularities in Sparse and Explicit Word Representations},
 year = {2014}
}

@inproceedings{W14-1619,
 address = {Ann Arbor, Michigan},
 author = {Melamud, Oren  and  Dagan, Ido  and  Goldberger, Jacob  and  Szpektor, Idan  and  Yuret, Deniz},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {181--190},
 publisher = {Association for Computational Linguistics},
 title = {Probabilistic Modeling of Joint-context in Distributional Similarity},
 year = {2014}
}

@inproceedings{W14-1620,
 address = {Ann Arbor, Michigan},
 author = {Fourtassi, Abdellah  and  Dupoux, Emmanuel},
 booktitle = {Proceedings of the Eighteenth Conference on Computational Natural Language Learning},
 month = {June},
 pages = {191--200},
 publisher = {Association for Computational Linguistics},
 title = {A Rudimentary Lexicon and Semantics Help Bootstrap Phoneme Acquisition},
 year = {2014}
}

branch_name: refs/heads/master


text:
SUMMARY     = "Lua is a powerful, light-weight programming language designed for extending applications"
DESCRIPTION = "Lua is implemented in pure ANSI C, and compiles unmodified in all known platforms that have an ANSI C compiler"

LICENSE = "MIT"
PR = "r0"
DEPENDS = "readline"
inherit autotools-brokensep

SRC_URI = "http://www.lua.org/ftp/${PN}-${PV}.tar.gz"
SRC_URI[md5sum] = "efbb645e897eae37cad4344ce8b0a614"
SRC_URI[sha256sum] = "3fd67de3f5ed133bf312906082fa524545c6b9e1b952e8215ffbd27113f49f00"

LIC_FILES_CHKSUM = "file://doc/readme.html;md5=6ea43b5287c2c4d9d0988806a3e0f809"

EXTRA_OEMAKE = 'CC="${CC}" \
    LDFLAGS="${LDFLAGS}" \
    EXTRA="${CFLAGS}"'

do_compile () {
        oe_runmake linux
}

do_install () {
	oe_runmake \
	        'INSTALL_TOP=${D}${prefix}' \
                'INSTALL_BIN=${D}${bindir}' \
                'INSTALL_INC=${D}${includedir}/' \
                'INSTALL_MAN=${D}${mandir}/man1' \
                'INSTALL_SHARE=${D}${datadir}/lua' \
                install

}

repository: ADVANTECH-Corp/meta-advantech

repo_name: ADVANTECH-Corp/meta-advantech

branch_name: refs/heads/krogoth

gha_language: Shell

extension: bb


text:
@InProceedings{argyriou14,
  supplementary = {Supplementary:argyriou14-supp.pdf},
  title = {A Unifying View of Representer Theorems},
  author = {Andreas Argyriou and Francesco Dinuzzo},
  pages = {748-756},
  abstract = {It is known that the solution of regularization and interpolation problems with Hilbertian penalties can be expressed as a linear combination of the data. This very useful property, called the representer theorem, has been widely studied and applied to machine learning problems. Analogous optimality conditions have appeared in other contexts, notably in matrix regularization.  In this paper we propose a unified view, which generalizes the concept of representer theorems and extends necessary and sufficient conditions for such theorems to hold. Our main result shows a close connection between representer theorems and certain classes of regularization penalties, which we call orthomonotone functions.  This result not only subsumes previous representer theorems as  special cases but also yields a new class of optimality conditions, which goes beyond the classical linear combination of the data.  Moreover, orthomonotonicity   provides a useful criterion for testing whether a representer theorem  holds for a specific regularization problem.},
  section = {cycle-2},
}

repository: mreid/papersite

repo_name: mreid/papersite

gha_license_id: MIT

gha_language: TeX


text:
@book{manual2020,
 address = {Córdoba},
 author = {Bologna, Eduardo Leon},
 isbn = {978-987-86-4147-8},
 pages = {593},
 title = {Un Recorrido por los Métodos Cuantitativos en Ciencias Sociales a bordo de R},
 url = {https://estadisticacienciassocialesr.rbind.io/},
 year = {2020}
}

repository: ebologna/academic-kickstart

repo_name: ebologna/academic-kickstart


text:
@article{2006-CB,
 abstract = {Irregular parallel algorithms pose a significant challenge for achieving high performance because of the difficulty predicting memory access patterns or execution paths. Within an irregular application, fine-grained synchronization is one technique for managing the coordination of work; but in practice the actual performance for irregular problems depends on the input, the access pattern to shared data structures, the relative speed of processors, and the hardware support of synchronization primitives. In this paper, we focus on lock-free and mutual exclusion protocols for handling fine-grained synchronization. Mutual exclusion and lock-free protocols have received a fair amount of attention in coordinating accesses to shared data structures from concurrent processes. Mutual exclusion offers a simple programming abstraction, while lock-free data structures provide better fault tolerance and eliminate problems associated with critical sections such as priority inversion and deadlock. These synchronization protocols, however, are seldom used in parallel algorithm designs, especially for algorithms under the SPMD paradigm, as their implementations are highly hardware dependent and their costs are hard to characterize. Using graph-theoretic algorithms for illustrative purposes, we show experimental results on two shared-memory multiprocessors, the IBM pSeries 570 and the Sun Enterprise 4500, that irregular parallel algorithms with efficient fine-grained synchronization may yield good performance.},
 author = {Guojing Cong and David A. Bader},
 bibsource = {dblp computer science bibliography, https://dblp.org},
 biburl = {https://dblp.org/rec/bib/journals/jpdc/CongB06},
 doi = {10.1016/j.jpdc.2005.12.004},
 groups = {Edited},
 journal = {Journal of Parallel and Distributed Computing},
 number = {6},
 pages = {854--866},
 timestamp = {Fri, 26 May 2017 01:00:00 +0200},
 title = {Designing irregular parallel algorithms with mutual exclusion and lock-free protocols},
 url = {https://doi.org/10.1016/j.jpdc.2005.12.004},
 volume = {66},
 year = {2006}
}


text:
@online{mckusick_zfs_2015_presentation,
	title = {{ZFS} Internals Overview},
	url = {https://www.youtube.com/watch?v=IQp_FglfzUQ},
	author = {{McKusick}, Kirk},
	urldate = {2020-09-01},
	date = {2015-10-21},
}

@online{ahrens_openzfs_basics,
	title = {{OpenZFS} Basics},
	url = {https://www.youtube.com/watch?v=MsY-BafQgj4},
	author = {Ahrens, Matt and Wilson, George},
	urldate = {2020-08-29},
	date = {2018-05-14},
}

@online{ahrens_read_write,
	title = {Lecture on {OpenZFS} read and write code paths},
	url = {https://www.youtube.com/watch?v=ptY6-K78McY},
	author = {Ahrens, Matt},
	urldate = {2020-08-29},
	date = {2016-03-03},
}

@online{dawidek_closer_2008,
	title = {A closer look at the {ZFS} file system},
	url = {https://www.bsdcan.org/2008/schedule/attachments/58_BSDCan2008-ZFSInternals.pdf},
	shorttitle = {{ZFS} the Internals},
	note = {{BSDCan}},
	author = {Dawidek, Paweł},
	urldate = {2020-12-20},
	date = {2008-05-16},
}

@incollection{zfs_terminology_fbsd,
	title = {19.8. {ZFS} Features and Terminology},
	booktitle = {FreeBSD Handbook},
	url = {https://www.freebsd.org/doc/handbook/zfs-term.html},
	author = {Rhodes, Tom and Jude, Allan and Reuschling, Benedict and Block, Warren},
	urldate = {2020-12-21},
}

@software{zfs,
    author = {Matt Ahrens et al.},
    title = {OpenZFS},
    url = {https://github.com/openzfs/zfs/tree/zfs-0.8.5},
    version = {0.8.5},
    date = {2020-10-06}
}

@software{zfs2,
    author = {Matt Ahrens et al.},
    title = {OpenZFS},
    url = {https://github.com/openzfs/zfs/tree/zfs-2.0.1},
    version = {2.0.1},
    date = {2021-01-06}
}

@software{linux,
    author = {Linus Torvalds et al.},
    title = {Linux},
    url = {https://www.kernel.org/},
    version = {5.4.65},
    date = {2020-09-12}
}

@software{newlinux,
    author = {Linus Torvalds et al.},
    title = {Linux},
    url = {https://www.kernel.org/},
    version = {5.10.4},
    date = {2020-12-30}
}
@software{fio,
    author = {Jens Axboe et al.},
    title = {Flexible I/O Tester},
    url = {https://github.com/axboe/fio},
    version = {3.25},
    date = {2020-12-04}
}

@article{lameter_numa_2013,
	title = {{NUMA} (Non-Uniform Memory Access): An Overview},
	volume = {11},
	issn = {15427730},
	url = {http://dl.acm.org/citation.cfm?doid=2508834.2513149},
	doi = {10.1145/2508834.2513149},
	shorttitle = {{NUMA} (Non-Uniform Memory Access)},
	pages = {40},
	number = {7},
	journaltitle = {Queue},
	shortjournal = {Queue},
	author = {Lameter, Christoph},
	urldate = {2020-06-10},
	date = {2013-07-01},
	langid = {english},
}

@article{dobson_linux_numa,
	title = {Linux Support for {NUMA} Hardware},
	journaltitle = {Proceedings of the Ottawa Linux Symposium},
	author = {Dobson, Matthew and Gaughen, Patricia and Hohnbaum, Michael and Focht, Erich},
	date = {2003-07-26},
	langid = {english},
	url = {https://www.kernel.org/doc/ols/2003/ols2003-pages-169-184.pdf},
}

@unpublished{lameter_slab_2014,
	title = {Slab allocators in the Linux Kernel},
	url = {https://events.static.linuxfound.org/sites/events/files/slides/slaballocators.pdf},
	author = {Lameter, Christoph},
	date = {2014-10-03},
	langid = {english},
}

@report{kochhar_optimal_2009,
	title = {Optimal {BIOS} Settings for High Performance Computing with {PowerEdge} 11G Servers},
	url = {https://i.dell.com/sites/content/business/solutions/whitepapers/en/Documents/11g-optimal-bios-settings-poweredge.pdf},
	pages = {28},
	institution = {Dell Product Group},
	author = {Kochhar, Garima and Liberman, Jacob},
	date = {2009-07-13},
	langid = {english}
}

@inproceedings {megiddo_dharmendra_ARC,
author = {Nimrod Megiddo and Dharmendra S. Modha},
title = {{ARC}: A Self-Tuning, Low Overhead Replacement Cache},
booktitle = {2nd {USENIX} Conference on File and Storage Technologies ({FAST} 03)},
year = {2003},
address = {San Francisco, CA},
url = {https://www.usenix.org/conference/fast-03/arc-self-tuning-low-overhead-replacement-cache},
publisher = {{USENIX} Association},
month = mar,
}

@article{bergstrom_stream,
  author    = {Lars Bergstrom},
  title     = {Measuring {NUMA} effects with the {STREAM} benchmark},
  journal   = {CoRR},
  volume    = {abs/1103.3225},
  year      = {2011},
  url       = {http://arxiv.org/abs/1103.3225},
  archivePrefix = {arXiv},
  eprint    = {1103.3225},
  timestamp = {Mon, 13 Aug 2018 16:47:46 +0200},
  biburl    = {https://dblp.org/rec/journals/corr/abs-1103-3225.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{li_characterization_2013,
	title = {Characterization of Input/Output Bandwidth Performance Models in {NUMA} Architecture for Data Intensive Applications},
	doi = {10.1109/ICPP.2013.46},
	abstract = {Data-intensive applications frequently rely on multicore computer systems, in which Non-Uniform Memory Access ({NUMA}) is a dominant architecture. To transfer data into and out from these high-performance computers becomes a bottleneck, and thus it is crucial to understand their I/O performance characteristics. However, the complexity in {NUMA} architecture presents a new challenge in modeling its I/O access cost, and thus lead to difficulties in configuring proper processor and memory affinity. In this paper, we show that existing {NUMA} experimental methods and metrics are inappropriate on contemporary high-end systems. We characterize a state-of-the-art {NUMA} host, and propose, to the best of our knowledge, the first methodology to simulate I/O operations using memory semantics, and model the I/O bandwidth performance. Our methodology is thoroughly tested and validated by mapping multiple parallel I/O streams to different sets of hardware components ({CPU}, memory, network cards, and {SSDs}) and by measuring the performance of each mapping. The experimental results and analysis reveal that our methodology can dramatically reduce characterization workload, accurately estimate the overall I/O performance, and effectively mitigate resource contention among I/O tasks.},
	eventtitle = {2013 42nd International Conference on Parallel Processing},
	pages = {369--378},
	booktitle = {2013 42nd International Conference on Parallel Processing},
	author = {Li, T. and Ren, Y. and Yu, D. and Jin, S. and Robertazzi, T.},
	date = {2013-10},
	note = {{ISSN}: 2332-5690},
	keywords = {Bandwidth, Benchmark testing, Data transfer, Data Transfer, Hardware, Input/Output(I/O), {NUMA} effects, Performance evaluation, Performance model, Servers, Topology},
}

@article{song_evaluation_2017,
	title = {Evaluation of Performance Unfairness in {NUMA} System Architecture},
	volume = {16},
	issn = {1556-6064},
	doi = {10.1109/LCA.2016.2602876},
	abstract = {{NUMA} (Non-uniform memory access) system architectures are commonly used in high-performance computing and datacenters. Within each architecture, a processor-interconnect is used for communication between the different sockets and examples of such interconnect include Intel {QPI} and {AMD} {HyperTransport}. In this work, we explore the impact of the processor-interconnect on overall performance-in particular, we explore the impact on performance fairness from the processor-interconnect arbitration. It is well known that locally-fair arbitration does not guarantee globally-fair bandwidth sharing as closer nodes receive more bandwidth in a multi-hop network. However, this paper is the first to demonstrate the opposite can occur in a commodity {NUMA} servers where remote nodes receive higher bandwidth (and perform better). This problem occurs because router micro-architectures for processor-interconnects commonly employ external concentration. While accessing remote memory can occur in any {NUMA} system, performance unfairness (or performance variation) is more critical in cloud computing and virtual machines with shared resources. We demonstrate how this unfairness creates significant performance variation when executing workload on the Xen virtualization platform. We then provide analysis using synthetic workloads to better understand the source of unfairness.},
	pages = {26--29},
	number = {1},
	journaltitle = {{IEEE} Computer Architecture Letters},
	author = {Song, Wonjun and Jung, Hyung-Joon and Ahn, Jung Ho and Lee, Jae W. and Kim, John},
	date = {2017-01},
	note = {Conference Name: {IEEE} Computer Architecture Letters},
	keywords = {{AMD} {HyperTransport}, Bandwidth, cloud computing, globally-fair bandwidth sharing, high-performance computing, Intel {QPI}, locally-fair arbitration, memory architecture, Micromechanical devices, multihop network, Multiprocessor interconnection, nonuniform memory access system architectures, {NUMA}, {NUMA} system architecture, parallel processing, performance unfairness evaluation, processor-interconnect, processor-interconnect arbitration, processor-interconnects, router microarchitectures, Servers, shared resources, Sockets, System-on-chip, unfairness, virtual machines, Virtual machining, Xen virtualization platform},
}

@report{burks_preliminary_1946,
	title = {Preliminary discussion of the logical design of an electronic computer instrument},
	url = {http://hdl.handle.net/2027.42/3972},
	author = {Burks, Arthur W. and Goldstine, Herman Heine and von Neumann, John},
	urldate = {2021-04-19},
	date = {1946-06-28},
}

@inproceedings{patterson_case_1988,
	location = {New York, {NY}, {USA}},
	title = {A case for redundant arrays of inexpensive disks ({RAID})},
	isbn = {978-0-89791-268-6},
	url = {https://doi.org/10.1145/50202.50214},
	doi = {10.1145/50202.50214},
	series = {{SIGMOD} '88},
	abstract = {Increasing performance of {CPUs} and memories will be squandered if not matched by a similar performance increase in I/O. While the capacity of Single Large Expensive Disks ({SLED}) has grown rapidly, the performance improvement of {SLED} has been modest. Redundant Arrays of Inexpensive Disks ({RAID}), based on the magnetic disk technology developed for personal computers, offers an attractive alternative to {SLED}, promising improvements of an order of magnitude in performance, reliability, power consumption, and scalability. This paper introduces five levels of {RAIDs}, giving their relative cost/performance, and compares {RAID} to an {IBM} 3380 and a Fujitsu Super Eagle.},
	pages = {109--116},
	booktitle = {Proceedings of the 1988 {ACM} {SIGMOD} international conference on Management of data},
	publisher = {Association for Computing Machinery},
	author = {Patterson, David A. and Gibson, Garth and Katz, Randy H.},
	urldate = {2021-04-18},
	date = {1988-06-01},
}

@misc{zfs_on_disk_2006,
	title = {{ZFS} On-Disk Specification},
	url = {http://www.giis.co.in/Zfs_ondiskformat.pdf},
	publisher = {Sun Microsystems},
	urldate = {2021-04-20},
	date = {2006},
}

@misc{azaghal_diagram_2012,
	title = {Diagram of a binary hash tree.},
	url = {https://commons.wikimedia.org/wiki/File:Hash_Tree.svg},
	shorttitle = {English},
	author = {{Azaghal}},
	urldate = {2021-04-21},
	date = {2012-01-25},
}

% This is an ancient source,
@incollection{gorman_describing_2004,
	location = {Upper Saddle River, {NJ}},
	title = {Describing Physical Memory},
	isbn = {978-0-13-145348-7},
	url = {https://www.kernel.org/doc/gorman/html/understand/understand005.html},
	series = {Bruce Perens' Open Source series},
	booktitle = {Understanding the Linux Virtual Memory Manager},
	publisher = {Prentice Hall},
	author = {Gorman, Mel},
	urldate = {2020-12-23},
	date = {2004},
}

repository: Tookmund/ZFSNUMA

repo_name: Tookmund/ZFSNUMA


text:
@article{loomis_investigation_2021,
 annote = {Comment: 42 pages, 36 figures, 9 tables, to appear in Nature Astronomy},
 author = {Loomis, Ryan A. and Burkhardt, Andrew M. and Shingledecker, Christopher N. and Charnley, Steven B. and Cordiner, Martin A. and Herbst, Eric and Kalenskii, Sergei and Lee, Kin Long Kelvin and Willis, Eric R. and Xue, Ci and Remijan, Anthony J. and McCarthy, Michael C. and McGuire, Brett A.},
 doi = {10.1038/s41550-020-01261-4},
 file = {arXiv Fulltext PDF:/home/kelvin/Dropbox (MIT)/Papers/Zotero/storage/6MTUL7HI/Loomis et al. - 2020 - An Investigation of Spectral Line Stacking Techniq.pdf:application/pdf;arXiv.org Snapshot:/home/kelvin/Dropbox (MIT)/Papers/Zotero/storage/SG6B3KXZ/2009.html:text/html},
 issn = {2397-3366},
 journal = {Nature Astronomy},
 keywords = {Astrophysics - Astrophysics of Galaxies, Astrophysics - Instrumentation and Methods for Astrophysics},
 language = {en},
 month = {January},
 pages = {188--196},
 title = {An investigation of spectral line stacking techniques and application to the detection of HC11N},
 url = {http://www.nature.com/articles/s41550-020-01261-4},
 urldate = {2021-01-21},
 volume = {5},
 year = {2021}
}

repository: MartinDrumel/personal-website

repo_name: MartinDrumel/personal-website


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repository: nishanbajracharya/color-palette

repo_name: nishanbajracharya/color-palette


text:
@book{Louviere2000,
address = {Cambridge, Massachusetts},
author = {Louviere, Jordan J. and Hensher, David A. and Swait, Joffre},
editor = {et al. Louviere, J.J.},
publisher = {Cambridge University Press},
title = {{Stated Choice Methods: Analysis and Applications}},
year = {2000}
}

@article{Sonnier2007,
author = {Sonnier, Garrett and Ainslie, Andrew and Otter, Thomas},
doi = {10.1007/s11129-007-9024-6},
journal = {Quant. Mark. Econ.},
keywords = {bayesian analysis,choice modeling,jel classification c11,m31,willingness-to-pay},
month = {aug},
number = {3},
pages = {313--331},
title = {{Heterogeneity distributions of willingness-to-pay in choice models}},
volume = {5},
year = {2007}
}

@book{Train2009,
author = {Train, Kenneth E.},
edition = {2nd},
publisher = {Cambridge University Press},
title = {{Discrete Choice Methods with Simulation}},
year = {2009}
}

@incollection{Train2005,
author = {Train, Kenneth E. and Weeks, Melvyn},
booktitle = {Appl. Simul. Methods Environ. Resour. Econ.},
chapter = {1},
pages = {1--16},
title = {{Discrete Choice Models in Preference and Willingness-to-Pay Space}},
year = {2005}
}

@article{Brownstone1999,
author = {Brownstone, David and Train, Kenneth E.},
journal = {J. Econom.},
keywords = {mixed logit,probit,random-coefficients logit,simulation},
title = {{Forecasting new product penetration with flexible substitution patterns}},
volume = {89},
year = {1999}
}

@article{McFadden2000,
author = {McFadden, Daniel and Train, Kenneth E.},
doi = {10.1002/1099-1255(200009/10)15:5<447::AID-JAE570>3.0.CO;2-1},
issn = {0883-7252},
journal = {J. Appl. Econom.},
month = {sep},
number = {5},
pages = {447--470},
title = {{Mixed MNL models for discrete response}},
url = {http://doi.wiley.com/10.1002/1099-1255(200009/10)15:5<447::AID-JAE570>3.0.CO;2-1},
volume = {15},
year = {2000}
}

@article{Helveston2018,
author = {Helveston, John Paul and Feit, Elea McDonnell and Michalek, Jeremy J.},
journal = {Transportation Research Part B: Methodological},
volume = {109},
pages = {70--89},
title = {{Pooling stated and revealed preference data in the presence of RP endogeneity}},
year = {2018}
}

@article{Jain1994,
title={A random-coefficients logit brand-choice model applied to panel data},
author={Jain, Dipak C and Vilcassim, Naufel J and Chintagunta, Pradeep K},
journal={Journal of Business \& Economic Statistics},
volume={12},
number={3},
pages={317--328},
year={1994},
publisher={Taylor \& Francis}
}

@article{Helveston2015,
author = {Helveston, John Paul and Liu, Yimin and Feit, Eleanor Mcdonnell and Fuchs, Erica R.H. and Klampfl, Erica and Michalek, Jeremy J.},
journal = {Transportation Research Part A: Policy and Practice},
pages = {96--112},
title = {{Will Subsidies Drive Electric Vehicle Adoption? Measuring Consumer Preferences in the U.S. and China}},
url = {http://dx.doi.org/10.1016/j.tra.2015.01.002},
volume = {73},
year = {2015}
}

repository: jhelvy/logitr

repo_name: jhelvy/logitr

gha_license_id: NOASSERTION

gha_language: R


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repository: LichKinContributor/lichkin-ui

repo_name: LichKinContributor/lichkin-ui


text:
@article{Ratelle-2021-Game,
    title = "Game bird consumption in Dene communities of the Northwest Territories, Canada",
    author = "Ratelle, Myl{\`e}ne  and
      Haig, Laurie  and
      Laird, Brian D  and
      Skinner, Kelly",
    journal = "Public Health Nutrition, Volume 24, Issue 6",
    volume = "24",
    number = "6",
    year = "2021",
    publisher = "Cambridge University Press (CUP)",
    url = "https://aclanthology.org/G21-98001",
    doi = "10.1017/s1368980021000021",
    pages = "1229--1239",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

branch_name: refs/heads/main

gha_language: Python


text:
@Article{aliutility2019,
  title = {Utility of the Movement Disorders Society Criteria for Progressive Supranuclear Palsy in Clinical Practice},
  volume = {6},
  copyright = {\textcopyright 2019 International Parkinson and Movement Disorder Society},
  issn = {2330-1619},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/mdc3.12807},
  doi = {10.1002/mdc3.12807},
  abstract = {Objectives When the 2017 Movement Disorders Society Criteria for progressive supranuclear palsy is applied, patients may appear to have multiple phenotypes. The maximum allocation extinction rules were developed to provide a consistent method for applying the criteria and reaching a single diagnostic label. In this study, we apply both to a neuropathologic cohort of progressive supranuclear palsy and other parkinsonian conditions. Methods An autopsy cohort of 54 patients with progressive supranuclear palsy and 56 patients with other neuropathologic diseases was selected. Clinical data were retrospectively abstracted, and the diagnostic criteria for progressive supranuclear palsy were applied. All possible phenotypes applicable were listed and maximum allocation extinction rules were applied to assess reduction in the number of phenotypes ascribed per patient. Results In the progressive supranuclear palsy group, 52 patients met the criteria for multiple phenotypes, with an average of 7 phenotypes per patient. In the nonprogressive supranuclear palsy group, all 56 patients had features of more than one phenotype, up to 3 per patient. After application of maximum allocation extinction rules, the majority of the patients in both groups had a single predominant phenotype. Freezing of gait, supranuclear gaze palsy, and frontal behavioral syndrome were more common in the progressive supranuclear palsy group. Conclusions The diagnostic criteria for progressive supranuclear palsy identify many clinical features, thereby leading to assignment of multiple phenotypes per patient. We demonstrate that the maximum allocation extinction rules can effectively lead to a single consensus phenotype, maintaining a uniform diagnostic label for clinical and research applications.},
  language = {en},
  urldate = {2020-09-19},
  journal = {Movement Disorders Clinical Practice},
  author = {Farwa Ali and Hugo Botha and Jennifer L. Whitwell and Keith A. Josephs},
  year = {2019},
  keywords = {progressive supranuclear palsy, PSP diagnostic criteria, diagnosis, MDS-PSP criteria},
  pages = {436--439},
  number = {6},
  note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/mdc3.12807},
  pubtype = {2},
  date = {2019-01-01},
}

repository: HugoBothaMD/academic-kickstart

repo_name: HugoBothaMD/academic-kickstart