text:
@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2019},
  url = {https://www.R-project.org/},
}
@Manual{R-Biobase,
  title = {Biobase: Base functions for Bioconductor},
  author = {R. Gentleman and V. Carey and M. Morgan and S. Falcon},
  year = {2019},
  note = {R package version 2.44.0},
}
@Manual{R-BiocGenerics,
  title = {BiocGenerics: S4 generic functions used in Bioconductor},
  author = {The Bioconductor Dev Team},
  year = {2019},
  note = {R package version 0.30.0},
}
@Manual{R-BiocParallel,
  title = {BiocParallel: Bioconductor facilities for parallel evaluation},
  author = {Martin Morgan and Valerie Obenchain and Michel Lang and Ryan Thompson and Nitesh Turaga},
  year = {2019},
  note = {R package version 1.18.0},
  url = {https://github.com/Bioconductor/BiocParallel},
}
@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2019},
  note = {R package version 0.12},
  url = {https://CRAN.R-project.org/package=bookdown},
}
@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  year = {2019},
  note = {R package version 1.12.2},
  url = {https://CRAN.R-project.org/package=data.table},
}
@Manual{R-DelayedArray,
  title = {DelayedArray: A unified framework for working transparently with on-disk and
in-memory array-like datasets},
  author = {Hervé Pagès and with contributions from Peter Hickey and Aaron Lun},
  year = {2019},
  note = {R package version 0.10.0},
}
@Manual{R-DESeq2,
  title = {DESeq2: Differential gene expression analysis based on the negative
binomial distribution},
  author = {Michael Love and Simon Anders and Wolfgang Huber},
  year = {2019},
  note = {R package version 1.24.0},
  url = {https://github.com/mikelove/DESeq2},
}
@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2019},
  note = {R package version 0.8.3},
  url = {https://CRAN.R-project.org/package=dplyr},
}
@Manual{R-DT,
  title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2019},
  note = {R package version 0.7},
  url = {https://CRAN.R-project.org/package=DT},
}
@Manual{R-GenomeInfoDb,
  title = {GenomeInfoDb: Utilities for manipulating chromosome names, including modifying
them to follow a particular naming style},
  author = {Sonali Arora and Martin Morgan and Marc Carlson and H. Pagès},
  year = {2019},
  note = {R package version 1.20.0},
}
@Manual{R-GenomicRanges,
  title = {GenomicRanges: Representation and manipulation of genomic intervals},
  author = {P. Aboyoun and H. Pagès and M. Lawrence},
  year = {2019},
  note = {R package version 1.36.0},
}
@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  note = {R package version 3.2.0},
  url = {https://CRAN.R-project.org/package=ggplot2},
}
@Manual{R-ggpubr,
  title = {ggpubr: 'ggplot2' Based Publication Ready Plots},
  author = {Alboukadel Kassambara},
  year = {2019},
  note = {R package version 0.2.1},
  url = {https://CRAN.R-project.org/package=ggpubr},
}
@Manual{R-IRanges,
  title = {IRanges: Foundation of integer range manipulation in Bioconductor},
  author = {H. Pagès and P. Aboyoun and M. Lawrence},
  year = {2019},
  note = {R package version 2.18.1},
}
@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2019},
  note = {R package version 1.23},
  url = {https://CRAN.R-project.org/package=knitr},
}
@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2018},
  note = {R package version 0.20-38},
  url = {https://CRAN.R-project.org/package=lattice},
}
@Manual{R-magrittr,
  title = {magrittr: A Forward-Pipe Operator for R},
  author = {Stefan Milton Bache and Hadley Wickham},
  year = {2014},
  note = {R package version 1.5},
  url = {https://CRAN.R-project.org/package=magrittr},
}
@Manual{R-matrixStats,
  title = {matrixStats: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)},
  author = {Henrik Bengtsson},
  year = {2018},
  note = {R package version 0.54.0},
  url = {https://CRAN.R-project.org/package=matrixStats},
}
@Manual{R-microbiome,
  title = {microbiome: Microbiome Analytics},
  author = {Leo Lahti and Sudarshan Shetty},
  year = {2019},
  note = {R package version 1.9.16},
  url = {http://microbiome.github.io/microbiome},
}
@Manual{R-microbiomeutilities,
  title = {microbiomeutilities: An R package with utility functions for the
microbiome R package},
  author = {Sudarshan Shetty and Leo Lahti},
  year = {2019},
  note = {R package version 0.99.0},
}
@Manual{R-patchwork,
  title = {patchwork: The Composer of ggplots},
  author = {Thomas Lin Pedersen},
  year = {2017},
  note = {R package version 0.0.1},
  url = {https://github.com/thomasp85/patchwork},
}
@Manual{R-permute,
  title = {permute: Functions for Generating Restricted Permutations of Data},
  author = {Gavin L. Simpson},
  year = {2019},
  note = {R package version 0.9-5},
  url = {https://CRAN.R-project.org/package=permute},
}
@Manual{R-phyloseq,
  title = {phyloseq: Handling and analysis of high-throughput microbiome census data},
  author = {Paul J. McMurdie and Susan Holmes and with contributions from Gregory Jordan and Scott Chamberlain},
  year = {2019},
  note = {R package version 1.27.6},
  url = {http://dx.plos.org/10.1371/journal.pone.0061217},
}
@Manual{R-RColorBrewer,
  title = {RColorBrewer: ColorBrewer Palettes},
  author = {Erich Neuwirth},
  year = {2014},
  note = {R package version 1.1-2},
  url = {https://CRAN.R-project.org/package=RColorBrewer},
}
@Manual{R-reshape2,
  title = {reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package},
  author = {Hadley Wickham},
  year = {2017},
  note = {R package version 1.4.3},
  url = {https://CRAN.R-project.org/package=reshape2},
}
@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2019},
  note = {R package version 1.14},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}
@Manual{R-S4Vectors,
  title = {S4Vectors: Foundation of vector-like and list-like containers in
Bioconductor},
  author = {H. Pagès and M. Lawrence and P. Aboyoun},
  year = {2019},
  note = {R package version 0.22.0},
}
@Manual{R-scales,
  title = {scales: Scale Functions for Visualization},
  author = {Hadley Wickham},
  year = {2018},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=scales},
}
@Manual{R-SummarizedExperiment,
  title = {SummarizedExperiment: SummarizedExperiment container},
  author = {Martin Morgan and Valerie Obenchain and Jim Hester and Hervé Pagès},
  year = {2019},
  note = {R package version 1.14.0},
}
@Manual{R-vegan,
  title = {vegan: Community Ecology Package},
  author = {Jari Oksanen and F. Guillaume Blanchet and Michael Friendly and Roeland Kindt and Pierre Legendre and Dan McGlinn and Peter R. Minchin and R. B. O'Hara and Gavin L. Simpson and Peter Solymos and M. Henry H. Stevens and Eduard Szoecs and Helene Wagner},
  year = {2019},
  note = {R package version 2.5-5},
  url = {https://CRAN.R-project.org/package=vegan},
}

gha_language: HTML


text:
SUMMARY = "libcloudproviders is a DBus API that allows cloud storage sync clients to expose their services."
LICENSE="LGPL-3.0-or-later"
LIC_FILES_CHKSUM = "file://LICENSE;md5=e6a600fd5e1d9cbde2d983680233ad02"

GNOMEBASEBUILDCLASS = "meson"

DEPENDS = "glib-2.0"

inherit gnomebase gobject-introspection vala

SRC_URI[archive.sha256sum] = "4763213ca1e1fe30d422f5ae3b4f02a454f63414c1860ad142d6385f89d05929"

license: MIT

repository: openembedded/meta-openembedded

license_type: permissive

repo_name: openembedded/meta-openembedded

branch_name: refs/heads/master

gha_license_id: MIT

gha_language: BitBake

extension: bb


text:
DESCRIPTION = "Xfce4 settings"
SECTION = "x11/wm"
LICENSE = "GPLv2"
LIC_FILES_CHKSUM = "file://COPYING;md5=94d55d512a9ba36caa9b7df079bae19f"
DEPENDS = "exo gtk+ libxfce4util libxfce4ui xfconf dbus-glib libxi virtual/libx11 xrandr libnotify libxcursor libxklavier"

inherit xfce

SRC_URI += "file://0001-xsettings.xml-remove-trouble-causing-comment.patch \
            file://0002-xsettings.xml-Set-default-themes.patch"
SRC_URI[md5sum] = "cc4dd9179ead9046c056431f01a12000"
SRC_URI[sha256sum] = "0843f09ba9673f1d1b5df8dce4a17b63c183a9ba3be75fb6ef99a67fc8c1f77e"

FILES_${PN} += "${libdir}/xfce4"

RRECOMMENDS_${PN} += "gnome-icon-theme"

repository: sesamstrasse/meta-openembedded

repo_name: sesamstrasse/meta-openembedded

branch_name: HEAD


text:
@article{baldridge2016extensive,
 author = {Baldridge, Elita and Harris, David J and Xiao, Xiao and White, Ethan P},
 journal = {PeerJ},
 pages = {e2823},
 publisher = {PeerJ Inc.},
 title = {An extensive comparison of species-abundance distribution models},
 volume = {4},
 year = {2016}
}

repository: weecology/website

repo_name: weecology/website

branch_name: refs/heads/main

gha_language: TeX

extension: bib