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	multidimensional hashing, sparse data, vector images},
  numpages = {10},
  publisher = {ACM}
}

@INPROCEEDINGS{Lefebvre:2006:PSH:1179352.1141926,
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  year = {2006},
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  pages = {579},
  address = {New York, NY, USA},
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  acmid = {1141926},
  location = {Boston, Massachusetts},
  numpages = {10}
}

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@ARTICLE{CGF:CGF1775,
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	Engineering},
  year = {2008},
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  address = {Washington, DC, USA},
  publisher = {IEEE Computer Society},
  acmid = {1547260},
  doi = {10.1109/ICDE.2008.4497520},
  isbn = {978-1-4244-1836-7},
  numpages = {10}
}

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  title = {{Steal Tree: Low-Overhead Tracing of Work Stealing Schedulers}},
  booktitle = {Proceedings of the 34rd ACM SIGPLAN conference on Programming Language
	Design and Implementation, (To Appear)},
  year = {2013},
  series = {PLDI '13},
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	Parallel and Distributed Computing},
  year = {2012},
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@INPROCEEDINGS{lin2001reducing,
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	Symposium on},
  year = {2001},
  pages = {301--312},
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@INPROCEEDINGS{liu1994experiences,
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  booktitle = {Proceedings of the 2006 workshop on Memory performance: Dealing with
	Applications, systems and architectures},
  year = {2006},
  series = {MEDEA '06},
  pages = {5--12},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {1166134},
  keywords = {Cholesky factorization, Morton order, quadtrees},
  location = {Seattle, Washington},
  numpages = {8}
}

@ARTICLE{Lowdin56,
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@INPROCEEDINGS{ma2012data,
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  booktitle = {Proceedings of the 26th ACM international conference on Supercomputing},
  year = {2012},
  pages = {79--90},
  organization = {ACM}
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@INPROCEEDINGS{Ma:2012:DFT:2304576.2304589,
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  booktitle = {Proceedings of the 26th ACM International Conference on Supercomputing},
  year = {2012},
  series = {ICS '12},
  pages = {79--90},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {2304589},
  doi = {10.1145/2304576.2304589},
  isbn = {978-1-4503-1316-2},
  keywords = {fault tolerance, load balancing, work stealing},
  location = {San Servolo Island, Venice, Italy},
  numpages = {12}
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@ARTICLE{makino2003grape,
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	Ken},
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	particle simulation}},
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  year = {2003}
}

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@ARTICLE{Manne2014,
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  title = {{Fast Approximate Matrix Multiplication by Solving Linear Systems}},
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@BOOK{Markets,
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@INPROCEEDINGS{Martinez2011,
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  year = {1956},
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  abstract = {The approximate self-consistent field equations of Roothaan (1951)
	are studied from the standpoint of density matrix theory. Their direct
	solution, which entails repeated determination of the individual
	occupied orbitals, is shown to be quite unnecessary. All information
	about the system under consideration can be obtained in terms of
	a one-particle density matrix; and this can be constructed by an
	iterative method which involves only matrix algebra. As an illustration
	of the method, the ground state of the beryllium atom is calculated.
	The solution, which is approximated in a basis of four Slater functions,
	surpasses in accuracy all other analytical one-determinant wave functions
	so far available, with one exception (Holoien, 1955). And although
	it approaches the accurate solution of the Hartree-Fock equations
	the computation required is relatively small. Extensions of the method,
	in order to admit configuration-interaction calculations, are also
	discussed. An appendix introduces a 'steepest descent' method of
	solving eigenvalence problems, which may be regarded as the prototype
	of the iterative construction described in the paper.},
  doi = {10.1098/rspa.1956.0100}
}

@INPROCEEDINGS{NamdSC11,
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	on Petascale Machines with a Multicore-optimized Message-driven Runtime}},
  booktitle = {Proceedings of the 2011 ACM/IEEE conference on Supercomputing},
  year = {2011},
  address = {Seattle, WA},
  month = {November}
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  pages = {217-247},
  number = {3},
  publisher = {Springer}
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@ARTICLE{MellorCrummey2001,
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	Using Data and Computation Reorderings}},
  journal = {International Journal of Parallel Programming},
  year = {2001},
  volume = {29},
  pages = {217-247},
  number = {3},
  doi = {10.1023/A:1011119519789},
  keywords = {memory hierarchy optimization; data reordering; computation reordering;
	space-filling curves; multi-level blocking},
  language = {English},
  publisher = {Kluwer Academic Publishers-Plenum Publishers}
}

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	Computing, Networking, Storage and Analysis},
  year = {2013},
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  pages = {15:1--15:11},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {2503284},
  articleno = {15},
  doi = {10.1145/2503210.2503284},
  isbn = {978-1-4503-2378-9},
  keywords = {distributed load balancer, epidemic algorithm, load balancing},
  location = {Denver, Colorado},
  numpages = {11}
}

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  year = {1997},
  volume = {106},
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  number = {13}
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@ARTICLE{millam:5569,
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  year = {1997},
  volume = {106},
  pages = {5569-5577},
  number = {13},
  doi = {10.1063/1.473579},
  keywords = {density functional theory; molecular electronic states; HF calculations;
	matrix algebra},
  publisher = {AIP}
}

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	relational algebra},
  numpages = {51},
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@ARTICLE{Miyazaki2014,
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}

@ARTICLE{Gonis:1999:KKR,
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	and Grone, L. and Kanidoris, N. and Nichol, R. and Schneider, J.
	and Szalay, A. and Szapudi, I. and Wasserman, L.},
  title = {{Fast Algorithms and Efficient Statistics: $n$-point Correlation
	Functions}},
  booktitle = {{Proceedings of MPA/MPE/ESO Conference Mining the Sky}},
  year = {2000}
}

@TECHREPORT{Morton66,
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@INPROCEEDINGS{Mucci99papi:a,
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@ARTICLE{Naidu11,
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  year = {2011},
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  archiveprefix = {arXiv},
  arxivid = {1105.3571},
  eprint = {1105.3571}
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@ARTICLE{Nakano2007642,
  author = {Nakano, Aiichiro and Kalia, Rajiv K. and Nomura, Ken-ichi and Sharma,
	Ashish and Vashishta, Priya and Shimojo, Fuyuki and van Duin, Adri
	C.~T. and Goddard, William A. and Biswas, Rupak and Srivastava, Deepak},
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  year = {2007},
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@MISC{NarumiGordonBell2006,
  author = {Narumi, T. and Ohno, Y. and Okimoto, N. and Koishi, T. and Suenaga,
	A. and Futatsugi, N. and Yanai, R. and Himeno, R. and Fujikawa, S.
	and Taiji, M. and Ikei, M.},
  title = {{A 55 TFLOPS Simulation of Amyloid-forming Peptides from Yeast Prion
	Sup35 with the Special-purpose Computer System MDGRAPE-3}},
  year = {2006},
  note = {{ACM Gordon Bell Prize}}
}

@ARTICLE{Niklasson:2002:Pure,
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  title = {{Expansion algorithm for the density matrix}},
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  volume = {66},
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  abstract = {A purification algorithm for expanding the single-particle density
	matrix in terms of the Hamiltonian operator is proposed. The scheme
	works with a predefined occupation and requires less than half the
	number of matrix-matrix multiplications compared to existing methods
	at low (90\%) occupancy. The expansion can be used with a fixed chemical
	potential in which case it is an asymmetric generalization of and
	a substantial improvement over grand canonical McWeeny purification.
	It is shown that the computational complexity, measured as number
	of matrix multiplications, essentially is independent of system size
	even for metallic materials with a vanishing band gap.},
  publisher = {American Physical Society}
}

@ARTICLE{Niklasson:2004:DMPT,
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  pages = {193001}
}

@ARTICLE{Niklasson:2003:TRS4,
  author = {Niklasson, Anders M.~N. and Tymczak, C.~J. and Challacombe, Matt},
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@INPROCEEDINGS{noaje2011source,
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  year = {2011},
  pages = {512--519},
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@ARTICLE{ochsenfeld:1663,
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  year = {1998},
  volume = {109},
  pages = {1663-1669},
  number = {5},
  doi = {10.1063/1.476741},
  keywords = {HF calculations; density functional theory; matrix algebra; SCF calculations},
  publisher = {AIP}
}

@MASTERSTHESIS{OlsonSkov2002,
  author = {Olsen, Jesper Holm and Skov, S\o{}ren Christian},
  title = {{Cache-Oblivious Algorithms in Practice}},
  school = {Department of Computer Science, University of Copenhagen, Denmark},
  year = {2002}
}

@ARTICLE{PhysRevLett.112.046401,
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@ARTICLE{Ozaki2001,
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  volume = {64},
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  month = {Oct},
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  publisher = {American Physical Society}
}

@ARTICLE{Pagh2013,
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  title = {{Compressed matrix multiplication}},
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  volume = {5},
  pages = {1--17},
  number = {3},
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  doi = {10.1145/2493252.2493254}
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@ARTICLE{PhysRevB.58.12704,
  author = {Palser, Adam H.~R. and Manolopoulos, David E.},
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  volume = {58},
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}

@INPROCEEDINGS{Pan07algorithmsto,
  author = {Shen Pan and Cary Cherng and Kevin Dick and Richard E. Ladner},
  title = {{Algorithms to Take Advantage of Hardware Prefetching}},
  booktitle = {the Workshop on Algorithm Engineering and Experiments (ALENEX)},
  year = {2007}
}

@ARTICLE{Pan1991,
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  title = {{An improved Newton iteration for the generalized inverse of a matrix,
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  year = {1991}
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@MISC{papi,
  author = {{PAPI}},
  title = {{P}erformance {A}pplication {P}rogramming {I}nterface},
  note = {\url{http://icl.cs.utk.edu/papi/}}
}

@ARTICLE{peano1890courbe,
  author = {Peano, G.},
  title = {{Sur une courbe, qui remplit toute une aire plane}},
  journal = {Mathematische Annalen},
  year = {1890},
  volume = {36},
  pages = {157--160},
  number = {1},
  publisher = {Springer}
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@ARTICLE{Penrose1974,
  author = {Penrose, O and Lebowitz, JL},
  title = {{On the exponential decay of correlation functions}},
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@ARTICLE{Podobas2015,
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  title = {{A comparative performance study of common and popular task-centric
	programming frameworks}},
  year = {2015},
  pages = {1--28},
  number = {December 2013},
  doi = {10.1002/cpe},
  keywords = {10.1002/cpe.3186 and OpenMP,TBB,TILEPro64 NUMA scheduling,cilk,openmp,scheduling
	task performance,tbb,tilepro64 numa scheduling,wool}
}

@MISC{RahimianGordonBell2010,
  author = {Rahimian, A. and Lashuk, I. and Veerapaneni, S. and Chandramowlishwaran,
	S.~A. and Vetter, J. and Vuduc, R. and Zorin, D. and Biros, G.},
  title = {{Petascale Direct Numerical Simulation of Blood Flow on 200K Cores
	and Heterogeneous Architectures}},
  year = {2010},
  note = {{ACM Gordon Bell Prize}}
}

@INPROCEEDINGS{Raicu2011,
  author = {Raicu, Ioan and Foster, Ian T. and Beckman, Pete},
  title = {{Making a Case for Distributed File Systems at Exascale}},
  booktitle = {Proceedings of the Third International Workshop on Large-scale System
	and Application Performance},
  year = {2011},
  series = {LSAP '11},
  pages = {11--18},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {1996034},
  doi = {10.1145/1996029.1996034},
  isbn = {978-1-4503-0703-1},
  keywords = {distributed file systems, exascale computing, many-task computing,
	storage architecture},
  location = {San Jose, California, USA},
  numpages = {8}
}

@ARTICLE{Rainey,
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  title = {{Embedding Quadtree Matrices in a Lazy Functional Language}},
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	2009)},
  year = {2010},
  publisher = {MIT Press}
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@INCOLLECTION{sabne2012effects,
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  pages = {169--181}
}

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  author = {Samet, Hanan},
  abstract = {OBJECTIVE: The Home Study Course is intended for the practicing colposcopist
	or practitioner who is seeking to develop or enhance his or her colposcopic
	skills. The goal of the course is to present colposcopic cases that
	are unusual or instructive in terms of appearance, presentation,
	or management or that demonstrate new and important knowledge in
	the area of colposcopy or pathology. Participants may benefit from
	reading and studying the material or from testing their knowledge
	by answering the questions. ACCME ACCREDITATION: The American Society
	for Colposcopy and Cervical Pathology (ASCCP) is accredited by the
	Accreditation Council for Continuing Medical Education (ACCME) to
	sponsor continuing medical education for physicians. The ASCCP designates
	this continuing medical education activity for 1 credit hour in Category
	I of the Physician's Recognition Award of the American Medical Association.
	Credit is available for those who choose to apply. The Home Study
	Course is planned and produced in accordance with the ACCME's Essential
	Areas and Elements.}
}

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}

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}

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	a Strict Power Budget}},
  booktitle = {Proceedings of the International Conference for High Performance
	Computing, Networking, Storage and Analysis},
  year = {2014},
  series = {SC '14},
  pages = {807--818},
  address = {Piscataway, NJ, USA},
  publisher = {IEEE Press},
  acmid = {2683682},
  doi = {10.1109/SC.2014.71},
  isbn = {978-1-4799-5500-8},
  location = {New Orleans, Louisana},
  numpages = {12}
}

@INPROCEEDINGS{tempFTSC2013,
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	Computing, Networking, Storage and Analysis},
  year = {2013},
  address = {Denver, CO, USA},
  month = {November}
}

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	Database Machines}},
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}

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  author = {Schneider, Donovan A. and DeWitt, David J.},
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	database machines},
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  numpages = {12}
}

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@PHDTHESIS{Schwegler:1998:ONX,
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  title = {Thesis: Linear Scaling Computation of the {H}artree-{F}ock Exchange
	Matrix},
  school = {University of Minnessota},
  year = {1998},
  month = {October},
  url = {http://www.t12.lanl.gov/~mchalla/}
}

@ARTICLE{Schwegler:2000:ONX,
  author = {Eric Schwegler and Matt Challacombe},
  title = {Linear Scaling Computation of the {F}ock Matrix. {III}. {P}ermutational
	symmetry},
  journal = {Theor.~Chem.~Acc.},
  year = {2000},
  volume = {104},
  pages = {344-349}
}

@ARTICLE{Schwegler:1999:ONX,
  author = {Eric Schwegler and Matt Challacombe},
  title = {Linear Scaling Computation Of The {F}ock Matrix. {IV}. {M}ultipole
	accelerated formation of the exchange matrix},
  journal = {J.~Chem.~Phys.},
  year = {1999},
  volume = {111},
  pages = {6223--6229}
}

@ARTICLE{Schwegler:1996:ONX,
  author = {Schwegler, Eric and Challacombe, Matt},
  title = {Linear scaling computation of the {H}artree-{F}ock exchange matrix},
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  year = {1996},
  volume = {105},
  pages = {2726}
}

@ARTICLE{schwegler:8764,
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  year = {1998},
  volume = {109},
  pages = {8764-8769},
  number = {20},
  doi = {10.1063/1.477546},
  keywords = {ELECTRONIC STRUCTURE; MAGNETIC MOMENTS; CALCULATION METHODS; SERIES
	EXPANSION; atomic structure; molecular electronic states},
  publisher = {AIP}
}

@ARTICLE{ESchwegler97,
  author = {Schwegler, Eric and Challacombe, Matt and Head-Gordon, Martin},
  title = {Linear Scaling Computation Of The {F}ock Matrix. {II}. {R}igorous
	Bounds On Exchange Integrals And Incremental Fock Build},
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  year = {1997},
  volume = {106},
  pages = {9708-9717}
}

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  title = {Linear scaling density functional calculations with {G}aussian orbitals},
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  year = {1999},
  volume = {103},
  pages = {4782}
}

@ARTICLE{Sena2011,
  author = {Sena, Alex M.~P. and Miyazaki, Tsuyoshi and Bowler, David R.},
  title = {{Linear Scaling Constrained Density Functional Theory in CONQUEST}},
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  year = {2011},
  volume = {7},
  pages = {884--889},
  number = {4},
  publisher = {ACS Publications}
}

@ARTICLE{Simoncini:2002:Inexact,
  author = {Simoncini, V and Elden, L},
  title = {{Inexact Rayleigh Quotient-type methods for eigenvalue computations}},
  journal = {Bit Numerical Mathematics},
  year = {2002},
  volume = {42},
  pages = {159--182},
  number = {1},
  keywords = {eigenvalue,inexact}
}

@ARTICLE{Simoncini:2005:Inexact,
  author = {Simoncini, V and Szyld, D B},
  title = {{On the Occurrence of Superlinear Convergence of Exact and Inexact
	Krylov Subspace Methods}},
  journal = {SIAM Review},
  year = {2005},
  volume = {47},
  pages = {247--272},
  number = {2}
}

@ARTICLE{Simoncini:2003:Inexact,
  author = {Simoncini, Valeria and Szyld, Daniel B},
  title = {{Theory of Inexact Krylov Subspace Methods and Applications to Scientific
	Computing}},
  journal = {SIAM Journal on Scientific Computing},
  year = {2003},
  volume = {25},
  pages = {454--477},
  number = {2},
  abstract = {We provide a general framework for the understanding of inexact Krylov
	subspace methods for the solution of symmetric and nonsymmetric linear
	systems of equations, as well as for certain eigenvalue calculations.
	This framework allows us to explain the empirical results reported
	in a series of CERFACS technical reports by Bouras, Fraysse, and
	Giraud in 2000. Furthermore, assuming exact arithmetic, our analysis
	can be used to produce computable criteria to bound the inexactness
	of the matrix-vector multiplication in such a way as to maintain
	the convergence of the Krylov subspace method. The theory developed
	is applied to several problems including the solution of Schur complement
	systems, linear systems which depend on a parameter, and eigenvalue
	problems. Numerical experiments for some of these scientific applications
	are reported.},
  doi = {10.1137/S1064827502406415},
  keywords = {inexact matrix vector multiplies,inexact preconditioning,inner outer
	methods,iterative nonsymmetric solver,krylov subspace methods},
  publisher = {Philadelphia, PA: SIAM, c1993-}
}

@INPROCEEDINGS{skarlatos2013towards,
  author = {Skarlatos, Dimitrios and Pratikakis, Polyvios and Pnevmatikatos12,
	Dionisios},
  title = {{Towards Reliable Task Parallel Programs}},
  booktitle = {5th HiPEAC Workshop on Design for Reliability},
  year = {2013}
}

@ARTICLE{Skylaris2005,
  author = {Skylaris, Chris Kriton and Haynes, Peter D. and Mostofi, Arash A.
	and Payne, Mike C.},
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	on parallel computers}},
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  year = {2005},
  volume = {122},
  pages = {084119},
  number = {8},
  publisher = {AIP Publishing}
}

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  year = {2002},
  volume = {148},
  pages = {74 - 80},
  number = {1},
  doi = {10.1016/S0010-4655(02)00469-1},
  keywords = {Sparse matrices}
}

@ARTICLE{Smirnov:2001:KKR,
  author = {Smirnov, A.~V. and Johnson, D.~D.},
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  volume = {64},
  pages = {235129},
  timestamp = {2010.07.03}
}

@MISC{SIESTA:2010,
  author = {Soler, Jos{\'e} and Artacho, Emilio and Gale, Artacho and Garc{\'i}a,
	Alberto and Junquera, Javier and Ordej{\'o}n, Pablo and S{\'a}nchez-Portal,
	Daniel},
  title = {{S}{I}{E}{S}{T}{A}: {S}panish {I}nitiative for {E}lectronic {S}imulations
	with {T}housands of {A}toms},
  year = {2010},
  note = {\url{http://www.icmab.es/siesta/}},
  timestamp = {2010.07.03},
  url = {http://www.icmab.es/siesta/}
}

@INCOLLECTION{Solomonik2011,
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  title = {{Communication-Optimal Parallel 2.5D Matrix Multiplication and LU
	Factorization Algorithms}},
  booktitle = {Euro-Par 2011 Parallel Processing},
  publisher = {Springer},
  year = {2011},
  pages = {90--109}
}

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	E. Dorband and Udaya A. Ranawake and Charles V. Packer},
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  numpages = {4}
}

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  year={2003},
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 series = {ISSAC '06},
 year = {2006},
 isbn = {1-59593-276-3},
 location = {Genoa, Italy},
 pages = {5--5},
 numpages = {1},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {finite groups, matrix multiplication, representation theory},
}
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  year = {2006},
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  pages = {579--584},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {1185574},
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	inlining, tail-recursion elimination},
  location = {Melbourne, Florida},
  numpages = {6}
}

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	Matt},
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  journal = JCP,
  year = {2005},
  volume = {122},
  pages = {124105},
  timestamp = {2010.07.03}
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	D.~M.~C. and Shelton, W.~A. and Stocks, G.~M. and Canning, A. and
	Wang, Yang and Gyorffy, B.~L.},
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	Supercomputing (CDROM)},
  year = {1998},
  pages = {1--15},
  address = {Washington, DC, USA},
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@ARTICLE{Valiev20101477,
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	Straatsma and H.J.J. Van Dam and D. Wang and J. Nieplocha and E.
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@ARTICLE{VandeVondele2012,
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@INPROCEEDINGS{Williams:2012:MMF:2213977.2214056,
  author = {Vassilevska Williams, Virginia},
  title = {{Multiplying Matrices Faster than Coppersmith-Winograd}},
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  year = {2012},
  series = {STOC '12},
  pages = {887--898},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {2214056},
  doi = {10.1145/2213977.2214056},
  isbn = {978-1-4503-1245-5},
  keywords = {matrix multiplication},
  location = {New York, New York, USA},
  numpages = {12}
}

@BOOK{voit00,
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@PHDTHESIS{Walters:2007:FTH:1414854,
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  title = {{Fault-tolerant Techniques for High Performance Computing and a Bioinformatics
	Application}},
  year = {2007},
  address = {Detroit, MI, USA},
  note = {AAI3295992},
  advisor = {Chaudhary, Vipin},
  isbn = {978-0-549-41325-7},
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}

@ARTICLE{Wan20067,
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  year = {2006},
  volume = {219},
  pages = {7 - 12},
  number = {1},
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  keywords = {Fast Gauss transform}
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@INPROCEEDINGS{wang2003guided,
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  year = {2003},
  volume = {31},
  number = {2},
  pages = {388--398},
  organization = {ACM}
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	cosmological simulation}},
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	Computing, Networking, Storage and Analysis},
  year = {2013},
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  organization = {ACM},
  owner = {nbock},
  timestamp = {2014.04.23}
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@ARTICLE{Warren1995266,
  author = {Warren, Michael S. and Salmon, John K.},
  title = {A portable parallel particle program},
  journal = {Computer Physics Communications},
  year = {1995},
  volume = {87},
  pages = {266 - 290},
  number = {1-2}
}

@INBOOK{Warren:1995:HOT,
  chapter = {1},
  title = {A parallel, portable and versatile treecode},
  publisher = {SIAM},
  year = {1995},
  author = {Warren, Michael S. and Salmon, John K.},
  address = {Philadelphia},
  booktitle = {Philadelphia},
  city = {Seventh SIAM Conference on Parallel Processing for Scientific Computing},
  timestamp = {2010.07.03}
}

@INPROCEEDINGS{Warren:1993:PHO:169627.169640,
  author = {Warren, Michael S. and Salmon, John K.},
  title = {{A parallel hashed Oct-Tree N-body algorithm}},
  booktitle = {Proceedings of the 1993 ACM/IEEE conference on Supercomputing},
  year = {1993},
  series = {Supercomputing '93},
  pages = {12--21},
  address = {New York, NY, USA},
  publisher = {ACM},
  acmid = {169640},
  location = {Portland, Oregon, United States},
  numpages = {10}
}

@ARTICLE{10.1109/SUPERC.1992.236647,
  author = {Warren, Michael S. and Salmon, John K.},
  title = {{Astrophysical N-body simulations using hierarchical tree data structures}},
  journal = {SC Conference},
  year = {1992},
  pages = {570-576},
  address = {Los Alamitos, CA, USA},
  doi = {http://doi.ieeecomputersociety.org/10.1109/SUPERC.1992.236647},
  isbn = {0-8186-2630-5},
  publisher = {IEEE Computer Society}
}

@INPROCEEDINGS{Warren:1992:HOT,
  author = {Warren, Michael S. and Salmon, John K.},
  title = {{Astrophysical N-Body Simulations Using Hierarchical Tree Data Structures}},
  booktitle = {Supercomputing '92},
  year = {1992},
  pages = {570--576},
  address = {Los Alamitos},
  publisher = {IEEE Comp.~Soc.},
  note = {(1992 Gordon Bell Prize winner)},
  annote = {available as sc92.ps.Z},
  timestamp = {2010.07.03}
}

@MISC{WarrenGordonBell1992,
  author = {Warren, Michael S. and Salmon, John K.},
  title = {Simulation of 9 million gravitating stars by parallelizing a tree
	code},
  year = {1992},
  note = {{ACM Gordon Bell Prize}}
}

@MISC{WarrenGordonBell1997b,
  author = {Warren, Michael S. and Salmon, John K. and Becker, D.~J. and Goda,
	M.~P. and Sterling, T.},
  title = {Two problems: vortex fluid flow modeled with 360,000 particles; galaxy
	formation following 10,000,000 selfgravitating particles},
  year = {1997},
  note = {{ACM Gordon Bell Prize}}
}

@INPROCEEDINGS{Weaver2008,
  author = {Weaver, V.~M. and McKee, S.~A.},
  title = {Can hardware performance counters be trusted?},
  booktitle = {Workload Characterization, 2008.~IISWC 2008.~IEEE International Symposium
	on},
  year = {2008},
  pages = {141},
  month = {sept.},
  doi = {10.1109/IISWC.2008.4636099},
  keywords = {SPEC CPU 2000;SPEC CPU 2006;SPEC benchmarks;architectural tools;dynamic
	binary instrumentation tools;hardware performance counters;computer
	architecture;}
}

@ARTICLE{Weber:2004:PP,
  author = {Weber, Valery and Niklasson, Anders M.~N. and Challacombe, Matt},
  title = {{Ab Initio Linear Scaling Response Theory: Electric Polarizability
	by Perturbed Projection}},
  journal = {Physical Review Letters},
  year = {2004},
  volume = {92},
  pages = {193002},
  timestamp = {2010.07.03}
}

@ARTICLE{White:1996:CFMM,
  author = {White, C.~A. and Johnson, B.~G. and Gill, P.~M.~W. and Head-Gordon,
	Martin},
  title = {{Linear Scaling Density Functional Calculations Via The Continuous
	Fast Multipole Method}},
  journal = {Chem.~Phys.~Lett.},
  year = {1996},
  volume = {253},
  pages = {268},
  timestamp = {2010.07.03}
}

@ARTICLE{White94,
  author = {White, C.~A. and Johnson, B.~G. and Gill, P.~M.~W. and Head-Gordon,
	Martin},
  title = {{The Continuous Fast Multipole Method}},
  journal = {Chem.~Phys.~Lett.},
  year = {1994},
  volume = {230},
  pages = {8-16},
  number = {1-2},
  month = {NOV 18},
  timestamp = {2010.07.03}
}

@ARTICLE{White:1997:AOX,
  author = {White, C.~A. and Maslen, P. and Lee, M.~S. and Head-Gordon, Martin},
  title = {{The Tensor Properties Of Energy Gradients Within A Nonorthogonal
	Basis}},
  journal = {Chem.~Phys.~Lett.},
  year = {1997},
  volume = {276},
  pages = {133-138},
  number = {1-2},
  month = SEP,
  timestamp = {2010.07.03}
}

@ARTICLE{Wildberger:1997:KKR,
  author = {Wildberger, K. and Zeller, R. and Dederichs, P.~H.},
  title = {Screened {KKR}-{G}reen's-function method for layered systems},
  journal = {Physical Review B},
  year = {1997},
  volume = {55},
  pages = {10074--10080},
  timestamp = {2010.07.03}
}

@ARTICLE{Wise1999,
  author = {Wise, DS},
  title = {{Morton-order Matrices Deserve Compilers\&\#39; Support Technical
	Report 533}},
  journal = {Current},
  year = {1999},
  pages = {1--18}
}

@ARTICLE{Wise1992,
  author = {Wise, DS},
  title = {{Matrix algorithms using quadtrees}},
  journal = {Invit. TALK, ATABLE-92},
  year = {1992},
  pages = {1--16}
}

@ARTICLE{Wise1990,
  author = {Wise, D},
  title = {{Costs of quadtree representation of nondense matrices}},
  journal = {J. Parallel Distrib. Comput.},
  year = {1990},
  volume = {9},
  pages = {282--296},
  number = {3},
  month = jul
}

@INCOLLECTION{Wise:Ahnentafel,
  author = {Wise, David S.},
  title = {{Ahnentafel Indexing into Morton-Ordered Arrays, or Matrix Locality
	for Free}},
  booktitle = {Euro-Par 2000 Parallel Processing},
  publisher = {Springer Berlin / Heidelberg},
  year = {2000},
  editor = {Bode, Arndt and Ludwig, Thomas and Karl, Wolfgang and Wism\"{u}ller,
	Roland},
  volume = {1900},
  series = {Lecture Notes in Computer Science},
  pages = {774-783},
  affiliation = {Indiana University USA},
  isbn = {978-3-540-67956-1},
  keyword = {Computer Science}
}

@article{Camata2010,
author = {Camata, Jose J. and Coutinho, Alvaro L. G. a.},
journal = {2010 22nd Int. Symp. Comput. Archit. High Perform. Comput.},
month = oct,
pages = {151--158},
publisher = {Ieee},
title = {{Parallel Linear Octree Meshing with Immersed Surfaces}},
year = {2010}
}

@book{bader13,
year={2013},
volume={9},
series={Texts in Computational Science and Engineering},
booktitle={Space-Filling Curves: An Introduction with Applications in Scientific Computing},
title={Space-Filling Curves: An Introduction with Applications in Scientific Computing},
publisher={Springer Berlin Heidelberg},
author={Bader, Michael},
language={English}
}

@ARTICLE{1298805,
author={Bartholdi, J.J., III and Goldsman, P.},
journal={Visualization and Computer Graphics, IEEE Transactions on},
title={Multiresolution indexing of triangulated irregular networks},
year={2004},
month={July},
volume={10},
number={4},
pages={484-495},
keywords={computational geometry;curve fitting;mesh generation;hierarchical triangulation;multiresolution indexing;space-filling curve;spatial index;triangle mesh;triangulated irregular networks;Computer graphics;Filling;Geographic Information Systems;Indexing;Information retrieval;Rendering (computer graphics);Spatial indexes;Spatial resolution;Strips;Tin;TIN;Triangulated irregular network;hierarchical triangulation;multiresolution triangulation;space-filling curve;spatial index.;triangle mesh;Algorithms;Computer Graphics;Image Enhancement;Image Interpretation, Computer-Assisted;Imaging, Three-Dimensional;Signal Processing, Computer-Assisted},
}

@article{Gunther2006,
author = {Günther, Frank and Mehl, Miriam and Pögl, Markus and Zenger, Christoph},
journal = {SIAM J. Sci. Comput.},
keywords = {040604078,1,10,1137,25k99,35j05,35r99,65y20,68p05,68v20,ams subject classifications,cache-awareness,doi,introduction,most of the computing,partial differential equations,solution of par-,space-filling curves,space-tree,time in the numerical},
number = {5},
pages = {1634},
title = {{A Cache-Aware Algorithm for PDEs on Hierarchical Data Structures Based on Space-Filling Curves}},
volume = {28},
year = {2006}
}

@ARTICLE{Wise:1984:RMQ:1089389.1089398,
  author = {Wise, David S.},
  title = {Representing matrices as quadtrees for parallel processors: extended
	abstract},
  journal = {SIGSAM Bull.},
  year = {1984},
  volume = {18},
  pages = {24--25},
  month = {August},
  acmid = {1089398},
  address = {New York, NY, USA},
  doi = {http://doi.acm.org/10.1145/1089389.1089398},
  issue = {3},
  numpages = {2},
  publisher = {ACM}
}

@ARTICLE{Wise1990282,
  author = {Wise, David S. and Franco, John},
  title = {Costs of quadtree representation of nondense matrices},
  journal = {Journal of Parallel and Distributed Computing},
  year = {1990},
  volume = {9},
  pages = {282 - 296},
  number = {3}
}

@ARTICLE{Wise:2001:LSM:568014.379559,
  author = {Wise, David S. and Frens, Jeremy D. and Gu, Yuhong and Alexander,
	Gregory A.},
  title = {{Language support for Morton-order matrices}},
  journal = {SIGPLAN Not.},
  year = {2001},
  volume = {36},
  pages = {24--33},
  month = {June},
  acmid = {379559},
  address = {New York, NY, USA},
  issue = {7},
  keywords = {paging, quadtrees},
  numpages = {10},
  publisher = {ACM}
}

@ARTICLE{Yam:2003:TDSCF,
  author = {Yam, C.~Y. and Yokojima, S. and Chen, G.~H.},
  title = {{Linear-Scaling Time-Dependent Density-Functional-Theory}},
  journal = {Phys.~Rev.~B},
  year = {2003},
  volume = {68},
  pages = {153105},
  number = {15},
  timestamp = {2010.07.03}
}

@TECHREPORT{yang2003:FGT,
  author = {Yang, C. and Duraiswami, R. and Gumerov, N},
  title = {{I}mproved {F}ast {G}auss {T}ransform},
  institution = {Dept. of Computer Science, University of Maryland, College Park},
  year = {2003},
  number = {CS-TR-4495}
}

@INPROCEEDINGS{yang2000push,
  author = {Yang, C.~L. and Lebeck, A.~R.},
  title = {{Push vs. pull: Data movement for linked data structures}},
  booktitle = {Proceedings of the 14th international conference on Supercomputing},
  year = {2000},
  pages = {176--186},
  organization = {ACM}
}

@ARTICLE{yang1991direct,
  author = {Yang, W.},
  title = {Direct calculation of electron density in density-functional theory},
  journal = {Phys.~Rev.~Lett},
  year = {1991},
  volume = {66},
  pages = {1438--1441},
  number = {11},
  publisher = {APS}
}

@ARTICLE{yang1995density,
  author = {Yang, W. and Lee, T.~S.},
  title = {A density-matrix divide-and-conquer approach for electronic structure
	calculations of large molecules},
  journal = {J.~Chem.~Phys.},
  year = {1995},
  volume = {103},
  pages = {5674}
}

@INPROCEEDINGS{Chang:2011:2016802,
  author = {Mitsuo Yokokawa and Fumiyoshi Shoji and Atsuya Uno and Motoyoshi
	Kurokawa and Tadashi Watanabe},
  title = {{The K computer: Japanese next-generation supercomputer development
	project}},
  booktitle = {ISLPED '11: Proceedings of the 17th IEEE/ACM International Symposium
	on Low-power Electronics and Design},
  year = {2011},
  address = {Piscataway, NJ, USA},
  publisher = {IEEE Press},
  location = {Fukuoka, Japan}
}

@INPROCEEDINGS{yotov2007experimental,
  author = {Yotov, K. and Roeder, T. and Pingali, K. and Gunnels, J. and Gustavson,
	F.},
  title = {An experimental comparison of cache-oblivious and cache-conscious
	programs},
  booktitle = {Proceedings of the nineteenth annual ACM symposium on Parallel algorithms
	and architectures},
  year = {2007},
  pages = {93--104},
  organization = {ACM}
}

@ARTICLE{Yuster:2005:FastMM,
  author = {Yuster, Raphael and Zwick, Uri},
  title = {{Fast sparse matrix multiplication}},
  journal = {ACM T.~Alg.},
  year = {2005},
  volume = {1},
  pages = {2--13},
  number = {1},
  month = jul,
  doi = {10.1145/1077464.1077466},
  timestamp = {2010.11.12}
}

@ARTICLE{Zhao2013,
  author = {Zhao, Gongpu and Perilla, Juan R. and Yufenyuy, Ernest L. and Meng,
	Xin and Chen, Bo and Ning, Jiying and Ahn, Jinwoo and Gronenborn,
	Angela M. and Schulten, Klaus and Aiken, Christopher and Zhang, Peijun},
  title = {{Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom
	molecular dynamics}},
  journal = {Nature},
  year = {2013},
  volume = {497},
  pages = {643--646},
  number = {7451},
  month = may,
  issn = {0028-0836},
  owner = {nbock},
  publisher = {Nature Publishing Group, a division of Macmillan Publishers Limited.
	All Rights Reserved.},
  timestamp = {2014.05.06}
}

@INPROCEEDINGS{zheng2012scalable,
  author = {Zheng, Gengbin and Ni, Xiang and Kal{\'e}, Laxmikant V},
  title = {A scalable double in-memory checkpoint and restart scheme towards
	exascale},
  booktitle = {Dependable Systems and Networks Workshops (DSN-W), 2012 IEEE/IFIP
	42nd International Conference on},
  year = {2012},
  pages = {1--6},
  organization = {IEEE}
}

@ARTICLE{Zou2008,
  author = {Zou, Yi-Sheng and Ding, Guo-Fu and Xu, Ming-Heng and He, Yong},
  title = {Survey on real-time collision detection algorithms},
  journal = {Application Research of Computers},
  year = {2008},
  volume = {25},
  pages = {8}
}

@PROCEEDINGS{Dayde2004,
  title = {{High Performance Computing for Computational Science - VECPAR 2004}},
  year = {2004},
  editor = {Michel Dayd\'{e} and Jack Dongarra and Vicente Hern\'{a}ndez and
	Jos\'{e} M.~L.~M. Palma},
  volume = {3402},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer Berlin Heidelberg},
  owner = {nbock},
  timestamp = {2014.05.13}
}

@BOOK{Gianni1989,
  title = {{Experiments with quadtree representation of matrices}},
  publisher = {Springer Berlin Heidelberg},
  year = {1989},
  editor = {Gianni, P.},
  volume = {358},
  series = {Lecture Notes in Computer Science},
  address = {Berlin, Heidelberg},
  doi = {10.1007/3-540-51084-2},
  isbn = {978-3-540-51084-0}
}

@BOOK{CharmAppsBook:2013,
  title = {{Parallel Science and Engineering Applications: The Charm++ Approach}},
  publisher = {Taylor \& Francis Group, CRC Press},
  year = {2013},
  editor = {Kal\'{e}, Laxmikant V. and Bhatele, Abhinav},
  month = nov,
  isbn = {9781466504127}
}

@MISC{amdACML,
  title = {{AMD Core Math Library (ACML)}},
  note = {\url{http://developer.amd.com/libraries/acml/}}
}

@ARTICLE{bowler2011:ONREV,
  title = {$\mathcal{O} (N)$ methods in electronic structure calculations}
}

@MISC{bsd,
  title = {{BSD 3-Clause License}},
  note = {\url{http://opensource.org/licenses/BSD-3-Clause}},
  url = {http://opensource.org/licenses/BSD-3-Clause}
}

@MISC{charm,
  title = {{Charm{}\tt{++}}},
  note = {\url{http://charm.cs.uiuc.edu/}},
  owner = {nbock},
  timestamp = {2014.03.19}
}

@MISC{cilkplus,
  title = {{Intel Cilk Plus}},
  note = {\url{http://software.intel.com/en-us/articles/intel-cilk-plus/}},
  url = {http://software.intel.com/en-us/articles/intel-cilk-plus/}
}

@MISC{cnc,
  title = {{Concurrent Collections}},
  note = {\url{https://software.intel.com/en-us/articles/intel-concurrent-collections-for-cc}},
  url = {https://software.intel.com/en-us/articles/intel-concurrent-collections-for-cc}
}

@MISC{cuda,
  title = {{CUDA Programming Guide}},
  note = {\url{http://docs.nvidia.com/cuda/}},
  url = {http://docs.nvidia.com/cuda/}
}

@MISC{IntelCilkPlus,
  title = {{Intel Cilk Plus}},
  note = {\url{https://www.cilkplus.org/}},
  url = {https://www.cilkplus.org/}
}

@MISC{intelMKL,
  title = {{Intel Math Kernel Library (MKL)}},
  note = {\url{http://www.intel.com/software/products/mkl/}}
}

@MISC{IntelTBB,
  title = {{Intel Threading Building Blocks}},
  note = {\url{https://www.threadingbuildingblocks.org/}},
  url = {https://www.threadingbuildingblocks.org/}
}

@MISC{ispc,
  title = {{Intel SPMD Program Compiler}},
  note = {\url{http://ispc.github.com/}},
  url = {http://ispc.github.com/}
}

@MISC{nanox,
  title = {{Nanos++}},
  note = {\url{https://pm.bsc.es/nanox}},
  url = {https://pm.bsc.es/nanox}
}

@MISC{OCR,
  title = {{Open Community Runtime}},
  note = {\url{https://01.org/open-community-runtime}},
  url = {https://01.org/open-community-runtime}
}

@MISC{opencl,
  title = {{OpenCL}},
  note = {\url{https://www.khronos.org/opencl/}},
  url = {https://www.khronos.org/opencl/}
}

@MISC{openmp,
  title = {{OpenMP}},
  note = {\url{http://openmp.org/}},
  timestamp = {2012.08.10},
  url = {http://openmp.org/}
}

@MISC{openuh,
  title = {{OpenUH: Open-source UH Compiler}},
  note = {\url{http://web.cs.uh.edu/~openuh/}},
  url = {http://web.cs.uh.edu/~openuh/}
}

@MISC{tascel,
  title = {{TASCEL}},
  note = {\url{http://hpc.pnl.gov/tascel/}},
  url = {http://hpc.pnl.gov/tascel/}
}

@MISC{Wool,
  title = {{Wool - Fine Grained Independent Task Parallelism in C}}
}

@comment{jabref-meta: selector_publisher:}

@comment{jabref-meta: selector_author:}

@comment{jabref-meta: selector_keywords:}

@comment{jabref-meta: selector_journal:}

license_type: permissive

branch_name: refs/heads/master

extension: bib


text:
@article{kishan2021@hogcn,
  author={K. {Kc} and R. {Li} and F. {Cui} and A. {Haake}},
  journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
  title={Predicting Biomedical Interactions with Higher-Order Graph Convolutional Networks},
  year={2021},
  volume={},
  number={},
  pages={1-1},
  doi={10.1109/TCBB.2021.3059415}}

license: MIT


text:
@article{hasnain_can_2019,
 abstract = {© 2019 The Author(s). Background: The Thrombolysis ImPlementation in Stroke (TIPS) trial tested the effect of a multicomponent, multidisciplinary, collaborative intervention designed to increase the rates of intravenous thrombolysis via a cluster randomized controlled trial at 20 Australian hospitals (ten intervention, ten control). This sub-study investigated changes in self-reported perceptions and practices of physicians and nurses working in acute stroke care at the participating hospitals. Methods: A survey with 74 statements was administered during the pre-and post-intervention periods to staff at 19 of the 20 hospitals. An exploratory factor analysis identified the structure of the survey items and linear mixed modeling was applied to the final survey domain scores to explore the differences between groups over time. Result: The response rate was 45% for both the pre-(503 out of 1127 eligible staff from 19 hospitals) and post-intervention (414 out of 919 eligible staff from 18 hospitals) period. Four survey domains were identified: (1) hospital performance indicators, feedback, and training; (2) personal perceptions about thrombolysis evidence and implementation; (3) personal stroke skills and hospital stroke care policies; and (4) emergency and ambulance procedures. There was a significant pre-to post-intervention mean increase (0.21 95% CI 0.09; 0.34; p \textless 0.01) in scores relating to hospital performance indicators, feedback, and training; for the intervention hospitals compared to control hospitals. There was a corresponding increase in mean scores regarding perceptions about the thrombolysis evidence and implementation (0.21, 95% CI 0.06; 0.36; p \textless 0.05). Sub-group analysis indicated that the improvements were restricted to nurses' responses. Conclusion: TIPS resulted in changes in some aspects of nurses' perceptions relating to the evidence for intravenous thrombolysis and its implementation and hospital performance indicators, feedback, and training. However, there is a need to explore further strategies for influencing the views of physicians given limited statistical power in the physician sample. Trial registration: ACTRN12613000939796, UTN: U1111-1145-6762.},
 author = {Hasnain, M.G. and Levi, C.R. and Ryan, A. and Hubbard, I.J. and Hall, A. and Oldmeadow, C. and Grady, A. and Jayakody, A. and Attia, J.R. and Paul, C.L.},
 doi = {10.1186/s13012-019-0940-0},
 issn = {1748-5908},
 journal = {Implementation Science},
 month = {November},
 number = {1},
 title = {Can a multicomponent multidisciplinary implementation package change physicians' and nurses' perceptions and practices regarding thrombolysis for acute ischemic stroke? An exploratory analysis of a cluster-randomized trial},
 volume = {14},
 year = {2019}
}

repository: ChrisOldmeadow/academic-kickstart

repo_name: ChrisOldmeadow/academic-kickstart


text:
@article{thibault2011species,
 author = {Thibault, Katherine M and Supp, Sarah R and Giffin, Mikaelle and White, Ethan P and Ernest, SK Morgan},
 journal = {Ecology},
 number = {12},
 pages = {2316--2316},
 publisher = {Eco Soc America},
 title = {Species composition and abundance of mammalian communities},
 volume = {92},
 year = {2011}
}

repository: weecology/website

repo_name: weecology/website

branch_name: refs/heads/main

gha_license_id: MIT

gha_language: TeX


text:
@article{melymcb-0047,
 art_number = {1250108},
 author = {Carlevaro, C.M. and Martins-Da-Silva, J.H. and Savino, W. and Caffarena, E.R.},
 document_type = {Article},
 doi = {10.1142/S0219633612501088},
 journal = {Journal of Theoretical and Computational Chemistry},
 note = {cited By 5},
 number = {2},
 source = {Scopus},
 title = {Plausible binding mode of the active α4β1 antagonist, MK-0617, determined by docking and free energy calculations},
 url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84874034628&doi=10.1142%2fS0219633612501088&partnerID=40&md5=2a9c8a7db96481d5646d8c52064b3619},
 volume = {12},
 year = {2013}
}


text:
@article{clark+al.tacl23,
  title = {A Cross-Linguistic Pressure for Uniform Information Density in Word Order},
  venue = {TACL},
  year = {2023},
  code = {https://github.com/thomashikaru/word-order-uid},
  arXiv = {https://arxiv.org/abs/2306.03734},
  author = {Clark, Thomas and
	Meister, Clara and
	Pimentel, Tiago and
	Hahn, Michael and
	Futrell, Richard and
	Cotterell, Ryan and
	Levy, Roger},
  booktitle = {Transactions of the Association for Computational Linguistics},
  publisher = {Association for Computational Linguistics},
  abstract = {While natural languages differ widely in both canonical word order and word order flexibility, their word orders still follow shared cross-linguistic statistical patterns, often attributed to functional pressures. In the effort to identify these pressures, prior work has compared real and counterfactual word orders. Yet one functional pressure has been overlooked in such investigations: the uniform information density (UID) hypothesis, which holds that information should be spread evenly throughout an utterance. Here, we ask whether a pressure for UID may have influenced word order patterns cross-linguistically. To this end, we use computational models to test whether real orders lead to greater information uniformity than counterfactual orders. In our empirical study of 10 typologically diverse languages, we find that: (i) among SVO languages, real word orders consistently have greater uniformity than reverse word orders, and (ii) only linguistically implausible counterfactual orders consistently exceed the uniformity of real orders. These findings are compatible with a pressure for information uniformity in the development and usage of natural languages.},
  url = {https://arxiv.org/abs/2306.03734},
}

repository: rycolab/website

repo_name: rycolab/website


text:
@inproceedings{fitzgerald2001gosv2,
 author = {Fitzgerald, S and von Laszewski, Gregor and Swany, Martin},
 booktitle = {Global Grid Forum and GWD-GIS-011-5},
 comment = {TODO},
 title = {GOSv2: A Data Definition Language for Grid Information Services},
 url = {http://repository.binus.ac.id/content/M0094/M009444678.pdf},
 year = {2001}
}


text:
require libx11.inc
PR = "${INC_PR}.0"

SRC_URI += " file://dolt-fix.patch"
SRC_URI[archive.md5sum] = "5d74971360f194ce33d2bd2e4d9b066c"
SRC_URI[archive.sha256sum] = "8c7f867918a3739dc7cabe955179539d4a7ecc52cb42becfd261e5dfbff511ac"

repository: trini/openembedded

repo_name: trini/openembedded

extension: bb


text:
SUMMARY = "A port of Ruby on Rails' inflection to Python."
HOMEPAGE = "https://pypi.org/project/inflection"
LICENSE = "MIT"
SECTION = "devel/python"
LIC_FILES_CHKSUM = "file://LICENSE;md5=2fb6fa1a6f1792d78de19ad1bb653c31"

SRC_URI[md5sum] = "c3287d4f0e3bdf625a52d655cc514403"
SRC_URI[sha256sum] = "1a29730d366e996aaacffb2f1f1cb9593dc38e2ddd30c91250c6dde09ea9b417"

inherit pypi setuptools3 ptest

SRC_URI +=" \
	file://run-ptest \
"

RDEPENDS:${PN}_ptest +=" \
	${PYTHON_PN}_pytest \
"

do_install_ptest() {
	cp -f ${S}/test_inflection.py ${D}${PTEST_PATH}/
}

RDEPENDS:${PN} += "${PYTHON_PN}-pytest"

BBCLASSEXTEND = "native nativesdk"

repository: openembedded/meta-openembedded

repo_name: openembedded/meta-openembedded

gha_language: BitBake


text:
@article{Lee-2020-Integrated,
    title = "Integrated assessment of west coast of South Korea by use of benthic bacterial community structure as determined by eDNA, concentrations of contaminants, and in vitro bioassays",
    author = "Lee, Aslan Hwanhwi  and
      Lee, Junghyun  and
      Hong, Seongjin  and
      Kwon, Bong-Oh  and
      Xie, Yuwei  and
      Giesy, John P.  and
      Zhang, Xiaowei  and
      Khim, Jong Seong",
    journal = "Environment International, Volume 137",
    volume = "137",
    year = "2020",
    publisher = "Elsevier BV",
    url = "https://aclanthology.org/G20-95001",
    doi = "10.1016/j.envint.2020.105569",
    pages = "105569",
}

repository: gwf-uwaterloo/gwf-publications

repo_name: gwf-uwaterloo/gwf-publications

gha_language: Python


text:
# Copyright (C) 2020 Khem Raj <raj.khem@gmail.com>
# Released under the MIT license (see COPYING.MIT for the terms)

DESCRIPTION = "This package contains a stripped down version of libnl"
HOMEPAGE = "https://git.openwrt.org/?p=project/libnl-tiny.git;a=summary"
LICENSE = "LGPL-2.1-only"
LIC_FILES_CHKSUM = "file://nl.c;startline=4;endline=7;md5=f16bd5d25e622bb3001bab76be1f9f91"
SECTION = "libs"

SRCREV = "8e0555fb39f51a5d6436b4f1370850caa03611ea"
SRC_URI = "git://git.openwrt.org/project/libnl-tiny.git;branch=master"

inherit cmake pkgconfig
S = "${WORKDIR}/git"

FILES_SOLIBSDEV = ""
FILES:${PN} += "${libdir}/*.so"

repository: kraj/meta-openwrt

repo_name: kraj/meta-openwrt


text:
require libtool.inc

DEFAULT_PREFERENCE = "-1"

DEPENDS = "libtool-native"
PR = "${INC_PR}.1"

SRC_URI[md5sum] = "b32b04148ecdd7344abc6fe8bd1bb021"
SRC_URI[sha256sum] = "13df57ab63a94e196c5d6e95d64e53262834fe780d5e82c28f177f9f71ddf62e"
PACKAGES =+ "libltdl libltdl-dev libltdl-dbg"
FILES_${PN} += "${datadir}/aclocal*"
FILES_libltdl = "${libdir}/libltdl.so.*"
FILES_libltdl-dev = "${libdir}/libltdl.* ${includedir}/ltdl.h"
FILES_libltdl-dbg = "${libdir}/.debug/"

#
# We want the results of libtool-cross preserved - don't stage anything ourselves.
#
SYSROOT_PREPROCESS_FUNCS += "libtool_sysroot_preprocess"

libtool_sysroot_preprocess () {
       rm -rf ${SYSROOT_DESTDIR}${STAGING_DIR_TARGET}${bindir}/*
       rm -rf ${SYSROOT_DESTDIR}${STAGING_DIR_TARGET}${datadir}/aclocal/*
       rm -rf ${SYSROOT_DESTDIR}${STAGING_DIR_TARGET}${datadir}/libtool/config/*
}

repository: overo/overo-oe-natty

repo_name: overo/overo-oe-natty

branch_name: HEAD


text:
require emacs.inc

EXTRA_OECONF = "--without-sound --without-x"

#/!\warning untested recipe
DEFAULT_PREFERENCE = "-2"

FILESPATH = "${FILE_DIRNAME}/emacs-${PV}:${FILE_DIRNAME}/files"
SRC_URI = "${GNU_MIRROR}/emacs/emacs-${PV}.tar.gz;name=tarball \
	   file://emacs23.1-use-qemu.patch;patch=1 \
	   file://nostdlib-unwind.patch;patch=1"
SRC_URI[tarball.md5sum] = "a620d4452769d04ad8864d662f34f8dd"
SRC_URI[tarball.sha256sum] = "a94cd46301f000d2d1dcd3fd7ef08ad952846d01ca5d4168b4ec3e38e857da47"

S = "${WORKDIR}/emacs-${PV}"

repository: demsey/openembedded

repo_name: demsey/openembedded


text:
@Manual{CiteR,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/},
  note = {Version 3.6.3},
}
@Manual{R-inlmisc,
  title = {inlmisc: Miscellaneous Functions for the USGS INL Project Office},
  author = {Jason C. Fisher},
  year = {2020},
  note = {R package version 0.5.2},
  url = {https://CRAN.R-project.org/package=inlmisc},
}
@Manual{R-RandomFields,
  title = {RandomFields: Simulation and Analysis of Random Fields},
  author = {Martin Schlather and Alexander Malinowski and Marco Oesting and Daphne Boecker and Kirstin Strokorb and Sebastian Engelke and Johannes Martini and Felix Ballani and Olga Moreva and Jonas Auel and Peter Menck and Sebastian Gross and Ulrike Ober and Paulo Ribeiro and Brian D. Ripley and Richard Singleton and Ben Pfaff and R Core Team},
  year = {2020},
  note = {R package version 3.3.8},
  url = {https://CRAN.R-project.org/package=RandomFields},
}
@Manual{R-repmis,
  title = {repmis: Miscellaneous Tools for Reproducible Research},
  author = {Christopher Gandrud},
  year = {2016},
  note = {R package version 0.5},
  url = {https://CRAN.R-project.org/package=repmis},
}

repository: ppernot/MC-ChemDBOld

repo_name: ppernot/MC-ChemDBOld


text:
@article{Allison1976,
abstract = {The interrelationships between sleep, ecological, and constitutional variables were assessed statistically for 39 mammalian species. Slow-wave sleep is negatively associated with a factor related to body size, which suggests that large amounts of this sleep phase are disadvantageous in large species. Paradoxical sleep is associated with a factor related to predatory danger, which suggests that large amounts of this sleep phase are disadvantageous in prey species.},
author = {Allison, T and Cicchetti, D.},
doi = {10.1126/science.982039},
file = {:home/guillemot/T\'{e}l\'{e}chargements/Allison, Cicchetti - Science - 1976 - Sleep in mammals ecological and constitutional correlates.pdf:pdf},
issn = {0036-8075},
journal = {Science},
month = nov,
number = {4266},
pages = {732--734},
title = {{Sleep in mammals: ecological and constitutional correlates}},
url = {http://www.sciencemag.org/content/194/4266/732.abstract},
volume = {194},
year = {1976}
}

repository: PF-BB/RIR

repo_name: PF-BB/RIR


text:
require sqlite3.inc

PR = "r0"

SRC_URI[md5sum] = "ed3151ecaeb3f0a484195da5f694c773"
SRC_URI[sha256sum] = "99bcda2aaf7109a2859ee88aec1f370f61e461343c9bce6cc37f1bed5d933f67"


text:
.root {
  min-width: 300px;
  max-width: 640px;
  margin: 0 auto;
  padding-left: 15px;
  padding-right: 15px;
}

repository: draft-js-plugins/draft-js-plugins

repo_name: draft-js-plugins/draft-js-plugins

gha_language: TypeScript

extension: css


text:
require xorg-app-common.inc
DESCRIPTION = "The X Keyboard Extension essentially replaces the core protocol definition of keyboard."
DEPENDS += " libxkbfile"
PR = "${INC_PR}.0"

SRC_URI[archive.md5sum] = "885b4d8a7c8c7afb3312d31934cb3549"
SRC_URI[archive.sha256sum] = "b7612527914402d091424a93bc16f0d4d8778b4a874171f3f3dc681c690e65eb"

BBCLASSEXTEND = "native"


text:
% This file was created with JabRef 2.9.2.
% Encoding: Cp1252

@MISC{optirtcaboutus,
  author = {OptiRTC development team},
  title = {OptiRTC About Us},
  howpublished = {http://www.optirtc.com/about.htm},
  organization = {Geosyntec Consultants},
  url = {http://www.optirtc.com/about.htm}
}

@MISC{optirtchomepage,
  author = {OptiRTC development team},
  title = {OptiRTC home page},
  howpublished = {https://www.optirtc.com},
  abstract = {OptiRTC is an Internet of Things cloud platform designed to automate
	the collection, processing, and management of information developed
	by environmental monitoring and infrastructure control solutions.},
  keywords = {environment, water, real-time, internet, data, API, open information},
  organization = {Geosyntec Consultants, Inc},
  url = {https://www.optirtc.com}
}

repository: OptiRTC/generator-optidoc

repo_name: OptiRTC/generator-optidoc


text:
require msmcomm.inc

PR = "${INC_PR}.1"
PV = "0.6.0+gitr${SRCPV}"

S = "${WORKDIR}/git/libmsmcomm"

DEPENDS = " \
  vala-native \
  glib-2.0 \
  libgee \
  libfsobasics \
"

inherit autotools vala


text:
require linux.inc

DESCRIPTION = "Linux kernel for the Front Seat Driver (FSD) module on the University of Idaho MOOS-AUV"
KERNEL_IMAGETYPE = "uImage"

BOOT_SPLASH ?= "logo_linux_clut224-generic.ppm"
PV = "2.6.39"

S = "${WORKDIR}/git"

SRCREV = 45183d5874942b20846fd11b7dd583f69ff4eeff
SRC_URI = "git://www.sakoman.com/git/linux-omap-2.6.git;branch=omap-2.6.39;protocol=git \
	   file://defconfig \
           file://${BOOT_SPLASH} \
           file://add-pps-gpio-support.patch \
           file://modify-board-init.patch \
           "

# DB: Explicitly set the USB OTG port to HOST mode
MUSB_MODE = "host"

do_configure_prepend() {

        if [ "${MUSB_MODE}" = "host" ]; then
            sed -i 's:CONFIG_USB_GADGET=y:# CONFIG_USB_GADGET is not set:g' ${WORKDIR}/defconfig
            sed -i 's:# CONFIG_USB_MUSB_HOST is not set:CONFIG_USB_MUSB_HOST=y:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_PERIPHERAL=y:# CONFIG_USB_MUSB_PERIPHERAL is not set:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_OTG=y:# CONFIG_USB_MUSB_OTG is not set:g' ${WORKDIR}/defconfig
            sed -i 's:# CONFIG_USB_MUSB_HDRC_HCD is not set:CONFIG_USB_MUSB_HDRC_HCD=y:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_GADGET_MUSB_HDRC=y:# CONFIG_USB_GADGET_MUSB_HDRC is not set:g' ${WORKDIR}/defconfig
        fi

        if [ "${MUSB_MODE}" = "peripheral" ]; then
            sed -i 's:# CONFIG_USB_GADGET is not set:CONFIG_USB_GADGET=y:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_HOST=y:# CONFIG_USB_MUSB_HOST is not set:g' ${WORKDIR}/defconfig
            sed -i 's:# CONFIG_USB_MUSB_PERIPHERAL is not set:CONFIG_USB_MUSB_PERIPHERAL=y:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_OTG=y:# CONFIG_USB_MUSB_OTG is not set:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_HDRC_HCD=y:# CONFIG_USB_MUSB_HDRC_HCD is not set:g' ${WORKDIR}/defconfig
            sed -i 's:# CONFIG_USB_GADGET_MUSB_HDRC is not set:CONFIG_USB_GADGET_MUSB_HDRC=y:g' ${WORKDIR}/defconfig
        fi

        if [ "${MUSB_MODE}" = "otg" ]; then
            sed -i 's:# CONFIG_USB_GADGET is not set:CONFIG_USB_GADGET=y:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_HOST=y:# CONFIG_USB_MUSB_HOST is not set:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_PERIPHERAL=y:# CONFIG_USB_MUSB_PERIPHERAL is not set:g' ${WORKDIR}/defconfig
            sed -i 's:# CONFIG_USB_MUSB_OTG is not set:CONFIG_USB_MUSB_OTG=y:g' ${WORKDIR}/defconfig
            sed -i 's:CONFIG_USB_MUSB_HDRC_HCD=y:# CONFIG_USB_MUSB_HDRC_HCD is not set:g' ${WORKDIR}/defconfig
            sed -i 's:# CONFIG_USB_GADGET_MUSB_HDRC is not set:CONFIG_USB_GADGET_MUSB_HDRC=y:g' ${WORKDIR}/defconfig
        fi
}

repository: enterstudio/overo-ui-moos-auv

repo_name: enterstudio/overo-ui-moos-auv


text:
export IMAGE_BASENAME = "dvb-image"

IMAGE_LINGUAS = ""

DVB_PACKAGES = "task-bootstrap task-dvb"

export IPKG_INSTALL = "${DVB_PACKAGES}"
DEPENDS = "${DVB_PACKAGES}"

inherit image_ipk
LICENSE = MIT

repository: Terentyev/familiar-linux

repo_name: Terentyev/familiar-linux


text:
@inproceedings{05Smith19,
  author    = {Jacqueline Smith},
  title     = {Learning-focused TA Training on a Budget},
  booktitle = {Proceedings of the 24th Western Canadian Conference on Computing Education,
               {WCCCE} '19},
  year      = {2019},
  comment   = {To appear.}
}

inproceedings{03Campbell19,
 author = {Jennifer Campbell and Jacqueline Smith and Andrew Petersen},
 title = {Self-paced Mastery Learning CS1},
 booktitle = {Proceedings of the 50th ACM Technical Symposium on Computer Science Education},
 series = {SIGCSE '19},
 year = {2019},
 isbn = {978-1-4503-5890-3},
 location = {Minneapolis, MN, USA},
 pages = {955--961},
 numpages = {7},
 url = {http://doi.acm.org/10.1145/3287324.3287481},
 doi = {10.1145/3287324.3287481},
 acmid = {3287481},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {cs1, mastery learning, novice programming, self-paced},
}

@inproceedings{05Smith18,
 author    = {Jacqueline Smith},
 title = {Lightweight Strategies for Inclusive Teaching},
 booktitle = {Proceedings of the 23rd Western Canadian Conference on Computing Education},
 series = {WCCCE '18},
 year = {2018},
 isbn = {978-1-4503-5805-7},
 location = {Victoria, BC, Canada},
 pages = {14:1--14:1},
 articleno = {14},
 numpages = {1},
 url = {http://doi.acm.org/10.1145/3209635.3209647},
 doi = {10.1145/3209635.3209647},
 acmid = {3209647},
 publisher = {ACM},
 address = {New York, NY, USA},
}

inproceedings{11Craig17,
 author = {Craig, Michelle and Smith, Jacqueline and Petersen, Andrew},
 title = {Familiar Contexts and the Difficulty of Programming Problems},
 booktitle = {Proceedings of the 17th Koli Calling Conference on Computing Education Research},
 series = {Koli Calling '17},
 year = {2017},
 isbn = {978-1-4503-5301-4},
 location = {Koli, Finland},
 pages = {123--127},
 numpages = {5},
 url = {http://doi.acm.org/10.1145/3141880.3141898},
 doi = {10.1145/3141880.3141898},
 acmid = {3141898},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {CS1, context, novice programmers, transfer},
}


text:
* {
  margin: 0;
  box-sizing: border-box;
}

body {
/*  background: linear-gradient(#f6d365, #ffa991);*/
	background-image: url(../../image/HOME1.jpg);
	background-size: cover;
  color: #fff;
  font-family: sans-serif;
  min-height: 100vh;
}

header {
  min-height: 20vh;
  display: flex;
  flex-direction: column;
  justify-content: center;
  align-items: center;
  text-align: center;
  margin: 0 5px;
}

.github-corner svg:hover, .github-corner:focus svg {
  fill: #e68f78 !important;
}

.github-corner:hover .octo-arm, .github-corner:focus .octo-arm {
  animation: octocat-wave 560ms ease-in-out;
}

@keyframes octocat-wave {
  0%,
  100% {
    transform: rotate(0);
  }
  20%,
  60% {
    transform: rotate(-25deg);
  }
  40%,
  80% {
    transform: rotate(10deg);
  }
}

a {
  color: white;
}

a:hover {
  color: #885345;
}

button {
  color: #ffa991;
  background: #fff;
  cursor: pointer;
}

button:hover,
button:focus {
  background: #ffa991;
  color: #fff;
}

form {
  display: flex;
  justify-content: center;
  align-items: center;
}

form input,
form button {
  padding: 0.5rem;
  font-size: 1.5rem;
  background: #fff;
  outline: none;
  border: none;
  transition: all 0.3s ease;
}

form input {
  border-radius: 10px 0 0 10px;
  width: 300px;
}

form input:focus {
  background: #f5f5f5;
}

form button {
  border-radius: 0 10px 10px 0;
}

.buttons {
  display: flex;
  align-items: center;
  justify-content: center;
  min-height: 10vh;
  width: fit-content;
  margin: 0 auto;
}

.buttons button {
  border: none;
  outline: none;
  margin: 3px;
  border-radius: 10%;
}

.todo-container {
  display: flex;
  justify-content: center;
  align-items: center;
/*
	float:right;
	  justify-content: right;
  align-items: right;
*/
}

.todo-message {
  text-align: center;
}

.todo-list {
  min-width: 50%;
  list-style: none;
  padding: 0;
}

.todo-item {
  margin: 0 0.5rem 0.5rem 0.5rem;
  padding: 0.2rem;
  background: #fff;
  color: #000;
  font-size: 1rem;
  display: flex;
  justify-content: space-between;
  align-items: center;
  transition: all 0.3s ease;
  border-radius: 5px;
}

.todo-item span {
  cursor: pointer;
  transition: all 0.2s ease;
  user-select: none;
}

.todo-item-left {
  display: flex;
  align-items: center;
}

.todo-item p, .todo-item span {
  margin: 6px;
/*	4*/
}

.todo-item p {
  text-decoration: line-through transparent;
  cursor: pointer;
  transition: color 0.3s, text-decoration-color 0.7s;
}

.todo-item p.completed {
  color: #6e6e6e;
  text-decoration-color: #6e6e6e;
}

.todo-item .delete:hover {
  color: #d31f1f;
}

.todo-enter-active {
  transition: all 0.5s cubic-bezier(0.415, 0.1, 0.37, 1.355);
}

.todo-leave-active {
  transition: all 0.2s;
  position: absolute;
}

.todo-enter,
.todo-leave-to {
  transform: translateY(30px);
  opacity: 0;
}

@media (max-width: 769px) {
  .todo-list {
    min-width: 70%;
  }
}

@media (max-width: 500px) {
  .github-corner:hover .octo-arm {
    animation: none;
  }
  .github-corner .octo-arm {
    animation: octocat-wave 560ms ease-in-out;
  }
  form {
    width: 90%;
    margin: 0 auto;
  }
}

@media (max-width: 426px) {
  .todo-list {
    width: 100%;
  }
}

.help {
  position: fixed;
  top: 0;
  left: 0;
  padding: 1px;
  margin: 1px;
  cursor: pointer;
  font-size: 36px;
  color: #ffffffa1;
}

.introjs-tooltip {
  color: black;
}


text:
require u-boot-tk.inc

PR = "r18"

SRCREV = "5b2e79eb65589ec19caa4aeb26218ea3dccad038"

repository: Technokom/meta-tk-ti

repo_name: Technokom/meta-tk-ti


text:
@article{Dubey2019c,
 abstract = {Distributed coexisting applications found in the military and space domains, which operate over managed but shared computing resources at the edge require strong isolation from each other. The state of the art for computation sharing at the edge is traditionally based on Docker and similar pseudovirtualization features. Our team has been working on an end-to-end architecture that provides strong spatial and temporal isolation similar to what has become standard in avionics communities. In this paper, we describe an open-source extension to Linux that we have designed and implemented for our distributed real-time embedded managed systems (DREMS) architecture. The key concepts are the partitioning scheduler, strong security design, and a health management interface.},
 author = {Abhishek Dubey and W. Emfinger and A. Gokhale and P. Kumar and D. McDermet and T. Bapty and G. Karsai},
 doi = {10.1109/MAES.2019.2905921},
 file = {:Dubey2019c-Enabling_Strong_Isolation_for_Distributed_Real-Time_Applications_in_Edge_Computing_Scenarios.pdf:PDF},
 issn = {1557-959X},
 journal = {IEEE Aerospace and Electronic Systems Magazine},
 keywords = {},
 month = {July},
 number = {7},
 oldkeywords = {middleware},
 pages = {32-45},
 project = {cps-middleware,cps-reliability},
 tag = {platform},
 title = {Enabling Strong Isolation for Distributed Real-Time Applications in Edge Computing Scenarios},
 volume = {34},
 year = {2019}
}


text:
@article{6c1f9b7239f042408624f081be422537,
 abstract = {We present a radio lightcurve of the O5.5 III(f^+) star HD 168112, based on archive data from the Very Large Array (VLA) and the Australia Telescope Compact Array (ATCA). The fluxes show considerable variability and a negative spectral index, thereby confirming that HD 168112 is a non-thermal radio emitter. The non-thermal radio emission is believed to be due to synchrotron radiation from relativistic electrons that have been Fermi accelerated in shocks. For HD 168112, it is not known whether these shocks are due to a wind-wind collision in a binary system or to the intrinsic instability of the stellar wind driving mechanism. Assuming HD 168112 to be a single star, our synchrotron model shows that the velocity jump of the shocks should be very high, or there should be a very large number of shocks in the wind. Neither of these is compatible with time-dependent hydrodynamical calculations of O star winds. If, on the other hand, we assume that HD 168112 is a binary, the high velocity jump is easily explained by ascribing it to the wind-wind collision. By further assuming the star to be an eccentric binary, we can explain the observed radio variability by the colliding-wind region moving in and out of the region where free-free absorption is important. The radio data presented here show that the binary has a period of between one and two years. By combining the radio data with X-ray data, we find that the most likely period is ~1.4 yr.},
 author = {Ronny Blomme and Van Loo, Sven and De Becker, Michael and Gregor Rauw and Mark Runacres and Setia Gunawan, D. Y. A and Jessica Chapman},
 issn = {0004-6361},
 journal = {Astronomy & Astrophysics},
 keywords = {stars: winds, outflows, radiation mechanisms: non-thermal},
 language = {English},
 number = {3},
 pages = {1033--1040},
 publisher = {EDP Sciences},
 title = {Non-thermal radio emission from O-type stars. I. HD168112},
 volume = {436},
 year = {2005}
}

repository: mrunacre/academic-kickstart

repo_name: mrunacre/academic-kickstart


text:
@InProceedings{cohenb16,
  supplementary = {Supplementary:cohenb16-supp.pdf},
  title = {Convolutional Rectifier Networks as Generalized Tensor Decompositions},
  author = {Nadav Cohen and Amnon Shashua},
  pages = {955-963},
  abstract = {Convolutional rectifier networks, i.e. convolutional neural networks with rectified linear activation and max or average pooling, are the cornerstone of modern deep learning. However, despite their wide use and success, our theoretical understanding of the expressive properties that drive these networks is partial at best. On the other hand, we have a much firmer grasp of these issues in the world of arithmetic circuits. Specifically, it is known that convolutional arithmetic circuits possess the property of "complete depth efficiency", meaning that besides a negligible set, all functions realizable by a deep network of polynomial size, require exponential size in order to be realized (or approximated) by a shallow network. In this paper we describe a construction based on generalized tensor decompositions, that transforms convolutional arithmetic circuits into convolutional rectifier networks. We then use mathematical tools available from the world of arithmetic circuits to prove new results. First, we show that convolutional rectifier networks are universal with max pooling but not with average pooling. Second, and more importantly, we show that depth efficiency is weaker with convolutional rectifier networks than it is with convolutional arithmetic circuits. This leads us to believe that developing effective methods for training convolutional arithmetic circuits, thereby fulfilling their expressive potential, may give rise to a deep learning architecture that is provably superior to convolutional rectifier networks but has so far been overlooked by practitioners.},
}

repository: mreid/papersite

repo_name: mreid/papersite


text:
DESCRIPTION = "The OpenMoko Command Line Console"
SECTION = "openmoko/applications"
RDEPENDS += "gtkterm2"
PV = "1.0.0"
PR = "r1"

inherit openmoko

SRC_URI = "file://openmoko-terminal.png \
           file://openmoko-terminal.desktop \
           file://gtkterm2rc"

do_install() {
        install -d ${D}${sysconfdir}/skel
        install -d ${D}${datadir}/pixmaps
        install -d ${D}${datadir}/applications
        install -m 0644 ${WORKDIR}/openmoko-terminal.png ${D}${datadir}/pixmaps/
        install -m 0644 ${WORKDIR}/openmoko-terminal.desktop ${D}${datadir}/applications/
        install -m 0644 ${WORKDIR}/gtkterm2rc ${D}${sysconfdir}/skel/.gtkterm2rc
}

pkg_postinst_openmoko-terminal() {
#!/bin/sh -e
if [ "x$D" != "x" ]; then
    exit 1 # don't run at image generation time
else
    if [ -e "$HOME/.gtkterm2rc" ]; then
        echo "not overriding $HOME/.gtkterm2rc"
    else
        echo "installing $HOME/.gtkterm2rc from /etc/skel"
        cp -f ${sysconfdir}/skel/.gtkterm2rc $HOME/
    fi
fi
}

repository: jdegges/gumstix-pip-oe

repo_name: jdegges/gumstix-pip-oe


text:
DESCRIPTION = "FarSight is an audio/video conferencing framework specifically designed for Instant Messengers."
HOMEPAGE = "http://farsight.sf.net"
SRC_URI = "http://ewi546.ewi.utwente.nl/OE/source/${PN}_${PV}.tar.bz2"
PR="r1"

MAINTAINER = "Koen Kooi <koen@dominion.kabel.utwente.nl>"

DEPENDS = "glib-2.0 libxml2 zlib dbus libjingle gstreamer gst-plugins-base"

inherit autotools pkgconfig

S=  "${WORKDIR}/${PN}"
EXTRA_OECONF = " \
--disable-debug \
  --disable-gtk-doc \
  --disable-sequence-diagrams \
  --disable-sofia-sip \
  --enable-jingle-p2p \
  --disable-gnet \
  --disable-msnwebcam \
  --disable-msnavconf \
  --disable-yahoowebcam \
  --enable-rtp"

FILES_${PN} += "${libdir}/farsight-0.1/*so"
FILES_${PN}-dev += "${libdir}/farsight-0.1/*.a ${libdir}/farsight-0.1/*.so.*"

do_stage() {
autotools_stage_all
}

repository: BackupTheBerlios/openslug-svn

repo_name: BackupTheBerlios/openslug-svn


text:
@InProceedings{desjardins10a,
  title = {Tempered Markov Chain Monte Carlo for training of Restricted Boltzmann Machines},
  author = {Guillaume Desjardins and Aaron  Courville and Yoshua  Bengio and Pascal Vincent and Olivier Delalleau},
  pages = {145--152},
  abstract = {Alternating Gibbs sampling is the most common scheme used for sampling from Restricted Boltzmann Machines (RBM), a crucial component in deep architectures such as Deep Belief Networks. However, we find that it often does a very poor job of rendering the diversity of modes captured by the trained model. We suspect that this hinders the advantage that could in principle be brought by training algorithms relying on Gibbs sampling for uncovering spurious modes, such as the Persistent Contrastive Divergence algorithm. To alleviate this problem, we explore the use of tempered Markov Chain Monte-Carlo for sampling in RBMs.  We find both through visualization of samples and measures of likelihood on a toy dataset that it helps both sampling and learning.},
  pdf = {http://jmlr.org/proceedings/papers/v9/desjardins10a/desjardins10a.pdf},
}


text:
# Recipe created by recipetool
# This is the basis of a recipe and may need further editing in order to be fully functional.
# (Feel free to remove these comments when editing.)
#
# WARNING: the following LICENSE and LIC_FILES_CHKSUM values are best guesses - it is
# your responsibility to verify that the values are complete and correct.
LICENSE = "LGPLv2.1"
LIC_FILES_CHKSUM = "file://COPYING;md5=4fbd65380cdd255951079008b364516c"

HOMEPAGE = "https://github.com/lxc/lxc/"

DEFAULT_PREFERENCE = "-1"

# No information for SRC_URI yet (only an external source tree was specified)
SRCREV ?= "${AUTOREV}"
SRC_URI = "git://github.com/lxc/lxc.git;protocol=https;branch=master"

S = "${WORKDIR}/git"
# NOTE: the following library dependencies are unknown, ignoring: gnutls apparmor selinux seccomp
#       (this is based on recipes that have previously been built and packaged)
RDEPENDS_${PN} += "glibc-xilinx libcap bash"
DEPENDS_${PN} += "glibc-xilinx libcap"

FILES_${PN}-dbg += "{prefix}/src/"
FILES_${PN}-dbg += "{prefix}/src/*"
FILES_${PN}-dbg += "{sbindir}/.debug/"
FILES_${PN}-dbg += "{sbindir}/.debug/*"
FILES_${PN}-dbg += "{bindir}/.debug/"
FILES_${PN}-dbg += "{bindir}/.debug/*"
FILES_${PN}-dbg += "{libdir}/.debug/"
FILES_${PN}-dbg += "{libdir}/.debug/*"
FILES_${PN}-dbg += "${libdir}/lxc/hooks/.debug/unmount-namespace"
FILES_${PN}-dbg += "${libdir}/lxc/.debug/"
FILES_${PN}-dbg += "${libdir}/lxc/.debug/*"

# NOTE: if this software is not capable of being built in a separate build directory
# from the source, you should replace autotools with autotools-brokensep in the
# inherit line
#inherit pkgconfig autotools-brokensep
inherit pkgconfig autotools

# Specify any options you want to pass to the configure script using EXTRA_OECONF:
EXTRA_OECONF = "--with-init-script=sysvinit \
                --enable-capabilities \
                --prefix=/usr \
                --sysconfdir=/etc \
                --localstatedir=/var \
                --libexecdir=/usr/lib \
                "

do_configure() {
#    build_p=$(pwd)
#    cd ${S} ; ./autogen.sh; cd $build_p
    cd ${S} ; ./autogen.sh; cd ${B}
    oe_runconf
}


text:
@inproceedings{icassp99,
 address = {Phoenix},
 author = {A. Ferrari and J.Y. Tourneret and F.-X. Schmider},
 booktitle = {IEEE International Conference on Acoustics, Speech and
Signal Processing (ICASSP)},
 pages = {1369--1372},
 title = {Detection of extra solar planets using parametric
modeling},
 year = {1999}
}

repository: andferrari/academic-kickstart

repo_name: andferrari/academic-kickstart


text:
@Book{xie2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {http://yihui.org/knitr/},
}
@book{nield2016getting,
  title={Getting Started with SQL: A Hands-on Approach for Beginners},
  author={Nield, Thomas},
  year={2016},
  publisher={" O'Reilly Media, Inc."}
}
@book{mckinney2012python,
  title={Python for data analysis: Data wrangling with Pandas, NumPy, and IPython},
  author={McKinney, Wes},
  year={2012},
  publisher={" O'Reilly Media, Inc."}
}
@book{downey2012think,
  title={Think Python 2e},
  author={Downey, Allen B and Brooks Jr, Frederick P and Peek, Jerry and Todino, Grace and Strang, John and Robbins, Arnold and Lamb, Linda and Hannah, Elbert and Joy, William and Horton, Mark and others},
  year={2012},
  publisher={Green Tea Press Supplemental Material:}
}
@book{janssens2014data,
  title={Data Science at the Command Line: Facing the Future with Time-tested Tools},
  author={Janssens, Jeroen},
  year={2014},
  publisher={" O'Reilly Media, Inc."}
}
@book{vanderplas2016python,
  title={Python data science handbook: Essential tools for working with data},
  author={VanderPlas, Jake},
  year={2016},
  publisher={" O'Reilly Media, Inc."}
}


text:
cmake_minimum_required(VERSION 2.8.2)

project(ChibiOS-Contrib-download NONE)

include(ExternalProject)

# download ChibiOS Community contributions source from GitHub repo
# need to specify nanoframework as the active branch
ExternalProject_Add(
    ChibiOS-Contrib
    PREFIX ChibiOS-Contrib
    SOURCE_DIR ${CMAKE_BINARY_DIR}/ChibiOS-Contrib_Source
    GIT_REPOSITORY  https://github.com/nanoframework/ChibiOS-Contrib
    GIT_TAG nanoframework  # target specified branch
    GIT_SHALLOW 1   # download only the tip of the branch, not the complete history
    TIMEOUT 10
    LOG_DOWNLOAD 1
    # Disable all other steps
    INSTALL_COMMAND ""
    CONFIGURE_COMMAND ""
    BUILD_COMMAND ""
)

repository: nanoframework/metadata-processor

repo_name: nanoframework/metadata-processor

gha_language: C

extension: in


text:
@article{adl2019revisions,
 author = {Adl, Sina M. and Bass, David and Lane, Christopher E. and Lukeš, Julius and Schoch, Conrad L. and Smirnov, Alexey and Agatha, Sabine and Berney, Cedric and Brown, Matthew W. and Burki, Fabien and others},
 journal = {The Journal of Eukaryotic Microbiology},
 number = {1},
 pages = {4--119},
 title = {Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes},
 volume = {66},
 year = {2019}
}

repository: delCampoLab/academic-kickstart

repo_name: delCampoLab/academic-kickstart


text:
require bug-osgi.inc
PR = "${INC_PR}.2+svnr${SRCREV}"
DEPENDS += "com.buglabs.common com.buglabs.bug.module"