text:
year = {2007}
}
@article{Kacsuk2008,
author = {Kacsuk, P. and Farkas, Z. and Fedak, G.},
doi = {10.1109/eScience.2008.111},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Kacsuk, Farkas, Fedak - 2008 - Towards Making BOINC and EGEE Interoperable.pdf:pdf},
isbn = {978-1-4244-3380-3},
journal = {2008 IEEE Fourth International Conference on eScience},
keywords = {BOINC,Desktop Grid,EGEE,Grid,Service Grid,XtremWeb},
month = dec,
pages = {478--484},
publisher = {Ieee},
title = {{Towards Making BOINC and EGEE Interoperable}},
year = {2008}
}
@article{Milojicic2011,
address = {Los Alamitos, CA, USA},
author = {Milojicic, Dejan and Llorente, Ignacio M and Montero, Ruben S},
doi = {10.1109/MIC.2011.44},
issn = {1089-7801},
journal = {IEEE Internet Computing},
number = {2},
pages = {11--14},
publisher = {IEEE Computer Society},
title = {{OpenNebula: A Cloud Management Tool}},
volume = {15},
year = {2011}
}
@inproceedings{kofranek2013hummod,
author = {Kofr\'{a}nek, J and Matej\'{a}k, M and Privitzer, P and Tribula, M and Kulh\'{a}nek, T and \v{S}ilar, J and Pecinovsk\'{y}, R},
booktitle = {Proceedings of World Congress in Computer Science 2013 (WORLDCOMP'13), International Conference on Modeling, Simulation and Visualisation Methods (MSV'13)},
pages = {182--188},
title = {{HumMod-Golem Edition: large scale model of integrative physiology for virtual patient simulators}},
year = {2013}
}
@inproceedings{Kulhanek2014a,
author = {Kulhanek, T and Matejak, M and Silar, J and Kofranek, J},
booktitle = {Biomedical and Health Informatics (BHI), 2014 IEEE-EMBS International Conference on},
doi = {10.1109/BHI.2014.6864463},
keywords = {cloud computing;information services;parallel proc},
pages = {712--715},
title = {{Parameter estimation of complex mathematical models of human physiology using remote simulation distributed in scientific cloud}},
year = {2014}
}
@inproceedings{ruda2009virtual,
author = {Ruda, Miroslav and \v{S}ustr, Zden\v{e}k and Sitera, Ji$\backslash$vr\'{\i} and Anto\v{s}, David and Hejtm\'{a}nek, Luk\'{a}\v{s} and Holub, Petr and Mula\v{c}, Milo\v{s}},
booktitle = {Cracow Grid Workshop’09},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Ruda et al. - 2009 - Virtual Clusters as a New Service of MetaCentrum, the Czech NGI.pdf:pdf},
pages = {66--71},
title = {{Virtual Clusters as a New Service of MetaCentrum, the Czech NGI}},
year = {2009}
}
@article{Dostal2006,
author = {Dostal, O and Javornik, M and Ventruba, P},
journal = {INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY},
pages = {98},
publisher = {SPRINGER SCIENCE+ BUSINESS MEDIA},
title = {{Collaborative environment supporting research and education in the area of medical image information}},
volume = {1},
year = {2006}
}
@techreport{egi2014,
file = {:home/tomaton/Downloads/EGI-InSPIRE-D4.10-final.pdf:pdf},
institution = {EGI.eu},
title = {{Annual report of the EGI Production Infrastructure}},
year = {2014}
}
@article{Suga1974,
abstract = {We have previously shown in the normally ejecting canine left ventricle that E(t), the time-varying ratio of instantaneous pressure, P(t), to instantaneous volume, V(t), is little affected by end-diastolic volume or aortic pressure. The present study on an excised, supported canine heart preparation indicates that the thesis on E(t) is also valid for either totally isovolumic or auxobaric beats. Intraventricular volume was measured more accurately than it was in the previous study by a new volumetric system. Regression analysis of the data showed that the instantaneous pressure-volume relationship could be approximated by the equation P(t) = E(t).[V(t) - Vd], where Vd is an empirical constant, over a wide range of intraventricular volume. Similar E(t) curves were obtained from both isovolumic and auxobaric beats for a given contractile state. When the contractile state of the preparation was enhanced by a constant-rate infusion (0.2 \{micro\}g/min) of norepinephrine or isoproterenol into the coronary artery, the peak magnitude of E(t) increased 63\% from 3.6 mm Hg/ml and the time to peak E(t) shortened 10\% from 175 msec. We conclude that the present investigation substantiates our earlier study which established a link between E(t) and the contractile state of the heart.},
author = {Suga, H and Sagawa, K},
doi = {10.1161/01.RES.35.1.117},
file = {:home/tomaton/Downloads/Circulation Research-1974-SUGA-117-26.pdf:pdf},
isbn = {0009-7330 (Print) 0009-7330 (Linking)},
issn = {0009-7330},
journal = {Circulation research},
keywords = {instantaneous elasticity,pressure-volume diagram},
pages = {117--126},
pmid = {4841253},
title = {{Instantaneous pressure-volume relationships and their ratio in the excised, supported canine left ventricle.}},
volume = {35},
year = {1974}
}
@book{Culer1998,
author = {Culer, David and Singh, Jaswinder Pal and Gupta, Anoop},
file = {:home/tomaton/Downloads/culler.pdf:pdf},
publisher = {Morgan Kaufmann},
title = {{Parallel Computer Architecture}},
year = {1998}
}
@article{Erberich2006,
author = {Erberich, S. G. and Bhandekar, M. and Nelson, M. D. and Chervenak, a. and Kesselman, C.},
doi = {10.1007/s11548-006-0013-0},
file = {:home/tomaton/Downloads/CARS2006-LE445-DICOM\_Grid\_Interface-manuscript.pdf:pdf},
issn = {18616410},
journal = {International Journal of Computer Assisted Radiology and Surgery},
keywords = {DICOM,Data Grid,Globus Toolkit 4,Grid PACS,OGSA,PACS},
number = {ii},
pages = {100--102},
title = {{DICOM grid interface service for clinical and research PACS: A globus toolkit web service for medical data grids}},
volume = {1},
year = {2006}
}
@article{Gleich2005,
abstract = {The use of contrast agents and tracers in medical imaging has a long history. They provide important information for diagnosis and therapy, but for some desired applications, a higher resolution is required than can be obtained using the currently available medical imaging techniques. Consider, for example, the use of magnetic tracers in magnetic resonance imaging: detection thresholds for in vitro and in vivo imaging are such that the background signal from the host tissue is a crucial limiting factor. A sensitive method for detecting the magnetic particles directly is to measure their magnetic fields using relaxometry; but this approach has the drawback that the inverse problem (associated with transforming the data into a spatial image) is ill posed and therefore yields low spatial resolution. Here we present a method for obtaining a high-resolution image of such tracers that takes advantage of the nonlinear magnetization curve of small magnetic particles. Initial 'phantom' experiments are reported that demonstrate the feasibility of the imaging method. The resolution that we achieve is already well below 1 mm. We evaluate the prospects for further improvement, and show that the method has the potential to be developed into an imaging method characterized by both high spatial resolution as well as high sensitivity.},
author = {Gleich, Bernhard and Weizenecker, J\"{u}rgen},
doi = {10.1038/nature03808},
issn = {1476-4687},
journal = {Nature},
keywords = {Contrast Media,Contrast Media: chemistry,Magnetic Resonance Imaging,Magnetic Resonance Imaging: instrumentation,Magnetic Resonance Imaging: methods,Magnetics,Magnetics: diagnostic use,Phantoms, Imaging,Sensitivity and Specificity,Tomography,Tomography: instrumentation,Tomography: methods},
language = {en},
month = jun,
number = {7046},
pages = {1214--7},
pmid = {15988521},
publisher = {Nature Publishing Group},
title = {{Tomographic imaging using the nonlinear response of magnetic particles.}},
url = {http://www.nature.com.ezproxy.techlib.cz/nature/journal/v435/n7046/full/nature03808.html},
volume = {435},
year = {2005}
}
@techreport{Herr2006,
author = {Herr, Werner and Kaltchev, D I and Schmidt, F and Mcintosh, E},
file = {:home/tomaton/Downloads/lhc-project-report-927.pdf:pdf},
keywords = {01 Circular Colliders},
number = {June 2006},
pages = {30--33},
title = {{Large Scale Beam-beam Simulations for the CERN LHC using Distributed Computing}},
url = {http://cds.cern.ch/record/972345},
year = {2006}
}
@article{Anderson2006,
abstract = {With his brilliant theory of the Long Tail - a powerful new economic force in a world where the internet allows almost unlimited choice - Chris Anderson has identified an important truth about our economy and culture: the future does not lie in hits - the high-volume end of a traditional demand curve - but in what used to be regarded as misses - the curve's endlessly long tail.},
author = {Anderson, Chris},
doi = {30},
file = {:home/tomaton/Downloads/chris-anderson-the-long-tail-why-the-future-of-business-is-selling-less-of-more.pdf:pdf},
isbn = {184413850X},
issn = {02650487},
journal = {Word Journal Of The International Linguistic Association},
pages = {256},
title = {{The Long Tail: How Endless Choice Is Creating Unlimited Demand}},
url = {http://www.amazon.co.uk/dp/184413850X},
year = {2006}
}
@article{Leaver-fay2014,
author = {Leaver-fay, Andrew and Tyka, Michael and Lewis, Steven M and Lange, Oliver F and Jacak, Ron and Kaufman, Kristian and Renfrew, P Douglas and Smith, Colin a and Davis, Ian W and Cooper, Seth and Treuille, Adrien and Mandell, Daniel J and Ban, Yih-en Andrew and Fleishman, Sarel J and Corn, Jacob E and Kim, David E},
doi = {10.1016/B978-0-12-381270-4.00019-6.R},
file = {:home/tomaton/Downloads/nihms-350681.pdf:pdf},
isbn = {9780123812704},
title = {{R 3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules}},
year = {2014}
}
@article{Thomas2008,
abstract = {We present the current state of the development of the SAPHIR project (a Systems Approach for PHysiological Integration of Renal, cardiac and respiratory function). The aim is to provide an open-source multi-resolution modelling environment that will permit, at a practical level, a plug-and-play construction of integrated systems models using lumped-parameter components at the organ/tissue level while also allowing focus on cellular- or molecular-level detailed sub-models embedded in the larger core model. Thus, an in silico exploration of gene-to-organ-to-organism scenarios will be possible, while keeping computation time manageable. As a first prototype implementation in this environment, we describe a core model of human physiology targeting the short- and long-term regulation of blood pressure, body fluids and homeostasis of the major solutes. In tandem with the development of the core models, the project involves database implementation and ontology development.},
author = {Thomas, S Randall and Baconnier, Pierre and Fontecave, Julie and Fran\c{c}oise, Jean-Pierre and Guillaud, Fran\c{c}ois and Hannaert, Patrick and Hern\'{a}ndez, Alfredo and {Le Rolle}, Virginie and Mazi\`{e}re, Pierre and Tahi, Fariza and White, Ronald J},
doi = {10.1098/rsta.2008.0079},
file = {:home/tomaton/Downloads/3175.full(1).pdf:pdf},
isbn = {1364-503X (Print)$\backslash$n1364-503X (Linking)},
issn = {1364-503X},
journal = {Philosophical transactions. Series A, Mathematical, physical, and engineering sciences},
number = {June},
pages = {3175--3197},
pmid = {18565814},
title = {{SAPHIR: a physiome core model of body fluid homeostasis and blood pressure regulation.}},
volume = {366},
year = {2008}
}
@article{Hunter2004,
abstract = {The IUPS Physiome Project is an internationally collaborative open-source project to provide a public domain framework for computational physiology, including the development of modelling standards, computational tools and web-accessible databases of models of structure and function at all spatial scales. A number of papers in this volume deal with the development of specific mathematical models of physiological processes. This paper stands back from the detail of individual models and reviews the current state of the IUPS Physiome Project including organ and organ system continuum models, the interpretation of constitutive law parameters in terms of micro-structural models, and markup languages for standardizing cellular processes. Some current practical applications of the physiome models are given and some of the challenges for the next 5 years of the Physiome Project at the level of organs, cells and proteins are proposed.},
author = {Hunter, P J},
doi = {10.1016/j.pbiomolbio.2004.02.006},
issn = {0079-6107},
journal = {Progress in biophysics and molecular biology},
keywords = {Biological,Cell Physiological Phenomena,Computational Biology,Computational Biology: methods,Computational Biology: organization \& administrati,Computer Simulation,Database Management Systems,Information Storage and Retrieval,International Cooperation,Models,Research,Research Design,Research: organization \& administration,Systems Integration,Viscera,Viscera: physiology},
month = jan,
number = {2-3},
pages = {551--69},
pmid = {15142761},
title = {{The IUPS Physiome Project: a framework for computational physiology.}},
volume = {85},
year = {2004}
}
@article{Oppenheim1970,
author = {Oppenheim, AV},
file = {:home/tomaton/Downloads/AVOSpeechSpectro0870.pdf:pdf},
journal = {Spectrum, IEEE},
title = {{Speech spectrograms using the fast Fourier transform}},
url = {http://ieeexplore.ieee.org/xpls/abs\_all.jsp?arnumber=5213512},
year = {1970}
}
@article{DeLeoLeBorgne2002,
abstract = {Professional vocalists encounter demands requiring voluntary control of phonation, while utilizing a considerable range of frequency and intensity. These quantifiable acoustic events can be measured and represented in a phonetogram. Previous research has compared the phonetograms of trained and untrained voices and found significant differences between these groups. This study was designed to assess the effects of vocal training for singers over a period of nine months. Phonetogram contour changes were examined, with the primary focus on expansion of frequency range and/or intensity control. Twenty-one first-year, master's level, vocal music students, who were engaged in an intensive vocal performance curriculum, participated in this study. Following nine months of vocal training, significant differences were revealed in the subjects' mean frequency range and minimum vocal intensity across frequency levels. There was no significant difference for the mean maximum vocal intensity across frequency levels following vocal training.},
author = {{DeLeo LeBorgne}, Wendy and Weinrich, Barbara D.},
doi = {10.1016/S0892-1997(02)00070-X},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/DeLeo LeBorgne, Weinrich - 2002 - Phonetogram changes for trained singers over a nine-month period of vocal training.pdf:pdf},
isbn = {0892-1997 (Print)},
issn = {08921997},
journal = {Journal of Voice},
keywords = {Fundamental frequency/sound pressure level profile,Phonetogram,Vocal intensity,Vocal range profile (VRP),Vocal training},
number = {1},
pages = {37--43},
pmid = {12002885},
title = {{Phonetogram changes for trained singers over a nine-month period of vocal training}},
volume = {16},
year = {2002}
}
@incollection{Guyton2006,
abstract = {For this 11th edition of a classic text, Guyton and Hall, both affiliated with the Department of Physiology and Biophysics at the University of Mississippi Medical Center, have added a full-color design incorporating 800 figures, including ECGs, charts, graphs, and new line drawings. Features retained from the previous editions include short chapters, reference tables, discussion of the relationship between pathophysiology and clinical medicine, and the application of core concepts to clinical examples and real-life situations. Brandon/Hill suggested the 10th edition of the text for both initial purchase and as a part of the small medical library's core collection. Annotation : 2005 Book News, Inc., Portland, OR (booknews.com)},
author = {Guyton, Arthur Clifton and Hall, John E.},
booktitle = {Textbook of medical physiology},
chapter = {9},
isbn = {072168677X},
pages = {107},
publisher = {Elsevier Saunders},
title = {{Heart Muscle; The Heart as a Pump and Function of the Heart Valves}},
year = {2006}
}
@article{Lewis1996a,
abstract = {Before examining the intrinsic nature of computation we must have a precise idea of what computation means. In other works, we need to know what we're talking about! To do this, we shall begin with intuitive notions of terms such as calculation, computing procedure, and algorithm. Then we shall be able to develop a precise, formal characterization of computation which captures all of the modern aspects and concepts of this important activity.},
author = {Lewis, FD},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Lewis - 1996 - Essentials of Theoretical Computer Science.pdf:pdf},
journal = {University of Kentucky, Lexington, KY},
title = {{Essentials of Theoretical Computer Science}},
year = {1996}
}
@misc{Reese,
author = {Reese, George},
file = {:home/tomaton/Downloads/Cloud Application Architectures.pdf:pdf},
isbn = {9780596156367},
title = {{Cloud Computing Architectures: Building Applications and Infrastructures in the Cloud}}
}
@book{Saltelli2008,
abstract = {Complex mathematical and computational models are used in all areas of society and technology and yet model based science is increasingly contested or refuted, especially when models are applied to controversial themes in domains such as health, the environment or the economy. More stringent standards of proofs are demanded from model-based numbers, especially when these numbers represent potential financial losses, threats to human health or the state of the environment. Quantitative sensitivity analysis is generally agreed to be one such standard. Mathematical models are good at mapping assumptions into inferences. A modeller makes assumptions about laws pertaining to the system, about its status and a plethora of other, often arcane, system variables and internal model settings. To what extent can we rely on the model-based inference when most of these assumptions are fraught with uncertainties? Global Sensitivity Analysis offers an accessible treatment of such problems via quantitative sensitivity analysis, beginning with the first principles and guiding the reader through the full range of recommended practices with a rich set of solved exercises. The text explains the motivation for sensitivity analysis, reviews the required statistical concepts, and provides a guide to potential applications. The book: Provides a self-contained treatment of the subject, allowing readers to learn and practice global sensitivity analysis without further materials. Presents ways to frame the analysis, interpret its results, and avoid potential pitfalls. Features numerous exercises and solved problems to help illustrate the applications. Is authored by leading sensitivity analysis practitioners, combining a range of disciplinary backgrounds. Postgraduate students and practitioners in a wide range of subjects, including statistics, mathematics, engineering, physics, chemistry, environmental sciences, biology, toxicology, actuarial sciences, and econometrics will find much of use here. This book will prove equally valuable to engineers working on risk analysis and to financial analysts concerned with pricing and hedging. 2008 John Wiley \{\&\} Sons, Ltd.},
author = {Saltelli, Andrea and Ratto, Marco and Andres, Terry and Campolongo, Francesca and Cariboni, Jessica and Gatelli, Debora and Saisana, Michaela and Tarantola, Stefano},
booktitle = {Global Sensitivity Analysis. the Primer},
doi = {10.1002/9780470725184},
file = {:home/tomaton/Downloads/Global Sensitivity AnalysisThe Primer.pdf:pdf},
isbn = {9780470059975},
pages = {1--292},
title = {{Global Sensitivity Analysis. The Primer}},
url = {http://eu.wiley.com/WileyCDA/WileyTitle/productCd-0470059974.html},
year = {2008}
}
@article{Glatard2013,
abstract = {This paper presents the Virtual Imaging Platform (VIP), a platform accessible at http://vip.creatis.insa-lyon.fr to facilitate the sharing of object models and medical image simulators, and to provide access to distributed computing and storage resources. A complete overview is presented, describing the ontologies designed to share models in a common repository, the workflow template used to integrate simulators, and the tools and strategies used to exploit computing and storage resources. Simulation results obtained in four image modalities and with different models show that VIP is versatile and robust enough to support large simulations. The platform currently has 200 registered users who consumed 33 years of CPU time in 2011.},
author = {Glatard, Tristan and Lartizien, Carole and Gibaud, Bernard and {Da Silva}, Rafael Ferreira and Forestier, Germain and Cervenansky, Fr\'{e}d\'{e}ric and Alessandrini, Martino and Benoit-Cattin, Hugues and Bernard, Olivier and Camarasu-Pop, Sorina and Cerezo, Nadia and Clarysse, Patrick and Gaignard, Alban and Hugonnard, Patrick and Liebgott, Herv\'{e} and Marache, Simon and Marion, Adrien and Montagnat, Johan and Tabary, Joachim and Friboulet, Denis},
doi = {10.1109/TMI.2012.2220154},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Glatard et al. - 2013 - A virtual imaging platform for multi-modality medical image simulation.pdf:pdf},
isbn = {1558-254X (Electronic) 0278-0062 (Linking)},
issn = {02780062},
journal = {IEEE Transactions on Medical Imaging},
keywords = {Distributed computing infrastructures,medical image simulation,ontology,workflows},
number = {1},
pages = {110--118},
pmid = {23014715},
title = {{A virtual imaging platform for multi-modality medical image simulation}},
volume = {32},
year = {2013}
}
@article{Yu2005,
abstract = {With the advent of Grid and application technologies, scientists and engineers are building more and more complex applications to manage and process large data sets, and execute scientific experiments on distributed resources. Such application scenarios require means for composing and executing complex workflows. Therefore, many efforts have been made towards the development of workflow management systems for Grid computing. In this paper, we propose a taxonomy that characterizes and classifies various approaches for building and executing workflows on Grids. We also survey several representative Grid workflow systems developed by various projects world-wide to demonstrate the comprehensiveness of the taxonomy. The taxonomy not only highlights the design and engineering similarities and differences of state-of-the-art in Grid workflow systems, but also identifies the areas that need further research.},
archivePrefix = {arXiv},
arxivId = {cs/0503025},
author = {Yu, Jia and Buyya, Rajkumar},
doi = {10.1007/s10723-005-9010-8},
eprint = {0503025},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Yu, Buyya - 2005 - A Taxonomy of Workflow Management Systems for Grid Computing.pdf:pdf},
issn = {15707873},
keywords = {grid computing,scheduling,taxonomy,workflow management},
pages = {29},
primaryClass = {cs},
title = {{A Taxonomy of Workflow Management Systems for Grid Computing}},
url = {http://arxiv.org/abs/cs/0503025},
year = {2005}
}
@article{Chang2010,
abstract = {The Modeling Markup Language (MML) framework is a conceptual paradigm to quickly develop and solve biological models utilizing the CellML specification. In this study, we present the open source toolkit developed for this project and a possible workflow to create different scales of cardiac tissue models from a range of CellML models. Models from the CellML repository and other sources were tested for interoperability against the MML framework. Furthermore, to demonstrate the ability of the MML framework to deploy different scales of geometry, a model of atrial electrical activation is also presented.},
author = {Chang, David C. and Dokos, Socrates and Lovell, Nigel H.},
doi = {10.1109/IEMBS.2010.5626847},
file = {:home/tomaton/Downloads/05626847.pdf:pdf},
isbn = {9781424441235},
issn = {1557-170X},
journal = {2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10},
keywords = {Algorithms and Tools for Physiome,Multiscale Modeling,Physiological Modeling},
pages = {1481--1484},
pmid = {21096362},
title = {{MML toolkit and work flow overview: Creating temporo-spatial heart models from CellML}},
year = {2010}
}
@article{Bahn2008,
abstract = {This paper presents several parallel FFT algorithms with different degree of communication overhead for multiprocessors in network-on-chip (NoC) environment. Three different methods of parallel FFT are presented. One is the reference parallel FFT for comparison, and the other two with well-distributed computation as well as reduced communication overhead. By evenly distributing parallel computation tasks which uses data locality, the execution time for completing each stage of FFT can be reduced. Moreover, by optimizing data exchanges we minimize the communication overhead. Depending on the communication regularity, one can select appropriate parallel FFT algorithm. By using the simulation results of our cycle-accurate SystemC NoC model with a parameterizable 2-D mesh architecture, and the performance analysis in time as well as complexity, our proposed algorithms are shown to outperform other parallel FFT algorithm or high-speed DSP implementations.},
author = {Bahn, Jun Ho and Yang, Jungsook and Bagherzadeh, Nader},
doi = {10.1109/ITNG.2008.55},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Bahn, Yang, Bagherzadeh - 2008 - Parallel FFT algorithms on network-on-chips.pdf:pdf},
isbn = {0769530990},
issn = {0218-1266},
journal = {Proceedings - International Conference on Information Technology: New Generations, ITNG 2008},
pages = {1087--1093},
title = {{Parallel FFT algorithms on network-on-chips}},
year = {2008}
}
@article{Bayer1972Org,
author = {Bayer, Rudolf and McCreight, E. M.},
doi = {10.1007/BF00288683},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Bayer, McCreight - 2002 - Organization and maintenance of large ordered indexes.pdf:pdf},
issn = {0001-5903},
journal = {Acta Informatica},
number = {3},
pages = {173--189},
title = {{Organization and maintenance of large ordered indexes}},
volume = {1},
year = {1972}
}
@article{Vandenberghe2006,
abstract = {The time-varying elastance theory of Suga et al. is widely used to simulate left ventricular function in mathematical models and in contemporary in vitro models. We investigated the validity of this theory in the presence of a left ventricular assist device. Left ventricular pressure and volume data are presented that demonstrate the heart-device interaction for a positive-displacement pump (Novacor) and a rotary blood pump (Medos). The Novacor was implanted in a calf and used in fixed-rate mode (85 BPM), whereas the Medos was used at several flow levels (0-3 l/min) in seven healthy sheep. The Novacor data display high beat-to-beat variations in the amplitude of the elastance curve, and the normalized curves deviate strongly from the typical bovine curve. The Medos data show how the maximum elastance depends on the pump flow level. We conclude that the original time-varying elastance theory insufficiently models the complex hemodynamic behavior of a left ventricle that is mechanically assisted, and that there is need for an updated ventricular model to simulate the heart-device interaction.},
author = {Vandenberghe, Stijn and Segers, Patrick and Steendijk, Paul and Meyns, Bart and Dion, Robert a E and Antaki, James F and Verdonck, Pascal},
doi = {10.1097/01.mat.0000196525.56523.b8},
file = {:home/tomaton/Downloads/Modeling\_Ventricular\_Function\_during\_Cardiac.2.pdf:pdf},
isbn = {0000196525},
issn = {1058-2916},
journal = {ASAIO journal (American Society for Artificial Internal Organs : 1992)},
number = {July 2005},
pages = {4--8},
pmid = {16436883},
title = {{Modeling ventricular function during cardiac assist: does time-varying elastance work?}},
volume = {52},
year = {2006}
}
@inproceedings{Anderson2004,
author = {Anderson, DP},
booktitle = {Grid Computing, 2004. Proceedings. Fifth IEEE/ACM International Workshop on},
doi = {10.1109/GRID.2004.14},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Anderson - 2004 - Boinc A system for public-resource computing and storage.pdf:pdf},
publisher = {IEEE},
title = {{Boinc: A system for public-resource computing and storage}},
year = {2004}
}
@article{FernandezdeCanete2014,
abstract = {A mathematical model that provides an overall description of both the short- and long-term mechanisms of arterial pressure regulation is presented. Short-term control is exerted through the baroreceptor reflex while renal elimination plays a role in long-term control. Both mechanisms operate in an integrated way over the compartmental model of the cardiovascular system. The whole system was modelled in MODELICA, which uses a hierarchical object-oriented modelling strategy, under the DYMOLA simulation environment. The performance of the controlled system was analysed by simulation in light of the existing hypothesis and validation tests previously performed with physiological data, demonstrating the effectiveness of both regulation mechanisms under physiological and pathological conditions.},
author = {{Fernandez de Canete}, J and Luque, J and Barbancho, J and Munoz, V},
doi = {10.1016/j.compbiomed.2014.01.006},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Fernandez de Canete et al. - 2014 - Modelling of long-term and short-term mechanisms of arterial pressure control in the cardiovascul(2).pdf:pdf},
issn = {1879-0534},
journal = {Computers in biology and medicine},
month = apr,
pages = {104--112},
pmid = {24561348},
title = {{Modelling of long-term and short-term mechanisms of arterial pressure control in the cardiovascular system: An object-oriented approach.}},
volume = {47},
year = {2014}
}
@article{Raicu2010,
abstract = {Many-task computing aims to bridge the gap between two computing paradigms, high throughput computing and high performance computing. Many-task computing denotes high-performance computations comprising multiple distinct activities, coupled via file system operations. The aggregate number of tasks, quantity of computing, and volumes of data may be extremely large. Traditional techniques found in production systems in the scientific community to support many-task computing do not scale to today's largest systems, due to issues in local resource manager scalability and granularity, efficient utilization of the raw hardware, long wait queue times, and shared/parallel file system contention and scalability. To address these limitations, we adopted a "top-down" approach to building a middleware called Falkon, to support the most demanding many-task computing applications at the largest scales. Falkon (Fast and Light-weight tasK executiON framework) integrates (1) multi-level scheduling to enable dynamic resource provisioning and minimize wait queue times, (2) a streamlined task dispatcher able to achieve orders-of-magnitude higher task dispatch rates than conventional schedulers, and (3) data diffusion which performs data caching and uses a data-aware scheduler to co-locate computational and storage resources. Micro-benchmarks have shown Falkon to achieve over 15K+ tasks/s throughputs, scale to hundreds of thousands of processors and to millions of queued tasks, and execute billions of tasks per day. Data diffusion has also shown to improve applications scalability and performance, with its ability to achieve hundreds of Gb/s I/O rates on modest sized clusters, with Tb/s I/O rates on the horizon. Falkon has shown orders of magnitude improvements in performance and scalability than traditional approaches to resource management across many diverse workloads and applications at scales of billions of tasks on hundreds of thousands of processors across clusters, specialized systems, Grids, and supercomputers. Falkon's performance and scalability have enabled a new class of applications called Many-Task Computing to operate at previously so-believed impossible scales with high efficiency. © 2010 Springer Science+Business Media, LLC.},
author = {Raicu, Ioan and Foster, Ian and Wilde, Mike and Zhang, Zhao and Iskra, Kamil and Beckman, Peter and Zhao, Yong and Szalay, Alex and Choudhary, Alok and Little, Philip and Moretti, Christopher and Chaudhary, Amitabh and Thain, Douglas},
doi = {10.1007/s10586-010-0132-9},
isbn = {1386785715737543},
issn = {13867857},
journal = {Cluster Computing},
keywords = {Computing,Data-intensive distributed computing,Falkon,High-performance computing,High-throughput,Loosely-coupled applications,Many-task computing,Petascale,Swift},
pages = {291--314},
title = {{Middleware support for many-task computing}},
volume = {13},
year = {2010}
}
@article{DeBono2011,
author = {de Bono, B. and Sammut, S.J. and Grenon, P.},
doi = {10.1109/eScienceW.2011.29},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/de Bono, Sammut, Grenon - 2011 - Achieving Semantic Interoperability between Physiology Models and Clinical Data.pdf:pdf},
isbn = {978-1-4673-0026-1},
journal = {2011 IEEE Seventh International Conference on e-Science Workshops},
month = dec,
pages = {135--142},
publisher = {Ieee},
title = {{Achieving Semantic Interoperability between Physiology Models and Clinical Data}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=6130742},
year = {2011}
}
@article{Richardson1998,
abstract = {VNC is an ultra thin client system based on a simple display protocol that is platform independent. It achieves mobile computing without requiring the user to carry any hardware. VNC provides access to home computing environments from anywhere in the world, on whatever computing infrastructure happens to be available-including, for example, public Web browsing terminals in airports. In addition, VNC allows a single desktop to be accessed from several places simultaneously, thus supporting application sharing in the style of computer supported cooperative work (CSCW). The technology underlying VNC is a simple remote display protocol. It is the simplicity of this protocol that makes VNC so powerful. Unlike other remote display protocols such as the X Window System and Citrix's ICA, the VNC protocol is totally independent of operating system, windowing system, and applications. The VNC system is freely available for download from the ORL Web site at http://www.orl.co.uk/vnc/. We begin the article by summarizing the evolution of VNC from our work on thin client architectures. We then describe the structure of the VNC protocol, and conclude by discussing the ways we use VNC technology now and how it may evolve further as new clients and servers are developed},
author = {Richardson, Tristan and Stafford-Fraser, Quentin and Wood, Kenneth R. and Hopper, Andy},
doi = {10.1109/4236.656066},
file = {:home/tomaton/Downloads/tr.98.1.pdf:pdf},
issn = {10897801},
journal = {IEEE Internet Computing},
pages = {33--38},
pmid = {10680121},
title = {{Virtual network computing}},
volume = {2},
year = {1998}
}
@article{Bosin2011,
author = {Bosin, Andrea and Dess\`{\i}, Nicoletta and Pes, Barbara},
doi = {10.1016/j.future.2010.07.003},
file = {:home/tomaton/Downloads/1-s2.0-S0167739X10001251-main.pdf:pdf},
isbn = {0706758501},
issn = {0167739X},
journal = {Future Generation Computer Systems},
month = jan,
number = {1},
pages = {20--31},
publisher = {Elsevier B.V.},
title = {{Extending the SOA paradigm to e-Science environments}},
volume = {27},
year = {2011}
}
@article{wuyts2003effects,
author = {Wuyts, FLORIS L and Heylen, LOUIS and Mertens, FONS and Caju, M D and Rooman, RAOUL and de Heyning, P H and {De Bodt}, Marc},
journal = {ANNALS OF OTOLOGY RHINOLOGY AND LARYNGOLOGY},
number = {6},
pages = {540--548},
publisher = {ANNALS PUBLISHING CO},
title = {{Effects of age, sex, and disorder on voice range profile characteristics of 230 children}},
volume = {112},
year = {2003}
}
@article{Weinhardt2009,
abstract = {The article describes a technical classification of Grid and Cloud Computing for a profound discussion on the business opportunities of the Cloud Computing paradigm. For this purpose, we present a framework for business models in Clouds. With the help of this framework business models can be placed at infrastructure, platform or application level. Subsequently, we discuss currently existing Cloud services which are integrated into the framework as well as categorized according to their pricing model and service type. Finally, the paper discusses challenges that have to be mastered in order to make the Cloud vision come true, such as the development of a Cloud API, the pricing of complex services, as well as security and reliability.},
author = {Weinhardt, Christof and Anandasivam, Arun and Blau, Benjamin and Borissov, Nikolay and Meinl, Thomas and Michalk, Wibke and St\"{o}\ss er, Jochen},
doi = {10.1007/s12599-009-0071-2},
file = {:home/tomaton/Downloads/art\%3A10.1007\%2Fs12599-009-0071-2.pdf:pdf},
isbn = {1867-0202},
issn = {1867-0202},
journal = {Business \& Information Systems Engineering},
pages = {391--399},
title = {{Cloud Computing – A Classification, Business Models, and Research Directions}},
volume = {1},
year = {2009}
}
@article{Kofranek2010,
abstract = {We present the current state of complex circulatory dynamics model development based on Guyton's famous diagram. The aim is to provide an open-source model that will allow the simulation of a number of pathological conditions on a virtual patient including cardiac, respiratory, and kidney failure. The model will also simulate the therapeutic influence of various drugs, infusions of electrolytes, blood transfusion, etc. As a current result of implementation, we describe a core model of human physiology targeting the systemic circulation, arterial pressure and body fluid regulation, including short- and long-term regulations. The model can be used for educational purposes and general reflection on physiological regulation in pathogenesis of various diseases.},
author = {Kofr\'{a}nek, J and Rusz, J},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Kofr\'{a}nek, Rusz - 2010 - Restoration of Guyton´s diagram for regulation of the circulation as a basis for quantitative physiological mo.pdf:pdf},
issn = {1802-9973},
journal = {Physiological research / Academia Scientiarum Bohemoslovaca},
keywords = {Blood Circulation,Blood Circulation: physiology,Blood Pressure,Blood Pressure: physiology,Body Fluids,Body Fluids: physiology,Cardiovascular,Computer Simulation,Humans,Models,Systems Biology},
month = jan,
number = {6},
pages = {897--908},
pmid = {20533860},
title = {{Restoration of Guyton´s diagram for regulation of the circulation as a basis for quantitative physiological model development.}},
volume = {59},
year = {2010}
}
@article{Foster2001,
author = {Foster, Ian and Kesselman, Carl and Tuecke, Steven},
file = {:home/tomaton/Downloads/anatomy.pdf:pdf},
journal = {International journal of high performance computing applications},
number = {3},
pages = {200--222},
title = {{The Anatomy of the Grid: Enabling Scalable Virtual Organizations}},
volume = {15},
year = {2001}
}
@incollection{Kuba2007a,
author = {Kuba, Martin and Kouřil, Daniel and Proch\'{a}zka, Michal},
booktitle = {Towards Next Generation Grids},
doi = {10.1007/978-0-387-72498-0\_8},
editor = {Priol, Thierry and Vanneschi, Marco},
file = {:home/tomaton/Downloads/chp\%3A10.1007\%2F978-0-387-72498-0\_8.pdf:pdf},
pages = {83--91},
publisher = {Springer US},
title = {{Sealed grid with downloadable services}},
year = {2007}
}
@article{Martin-Sanchez2004,
abstract = {In this paper, we review the results of BIOINFOMED, a study funded by the European Commission (EC) with the purpose to analyse the different issues and challenges in the area where Medical Informatics and Bioinformatics meet. Traditionally, Medical Informatics has been focused on the intersection between computer science and clinical medicine, whereas Bioinformatics have been predominantly centered on the intersection between computer science and biological research. Although researchers from both areas have occasionally collaborated, their training, objectives and interests have been quite different. The results of the Human Genome and related projects have attracted the interest of many professionals, and introduced new challenges that will transform biomedical research and health care. A characteristic of the 'post genomic' era will be to correlate essential genotypic information with expressed phenotypic information. In this context, Biomedical Informatics (BMI) has emerged to describe the technology that brings both disciplines (BI and MI) together to support genomic medicine. In recognition of the dynamic nature of BMI, institutions such as the EC have launched several initiatives in support of a research agenda, including the BIOINFOMED study. © 2003 Elsevier Inc. All rights reserved.},
author = {Martin-Sanchez, F. and Iakovidis, I. and N\o rager, S. and Maojo, V. and {De Groen}, P. and {Van Der Lei}, J. and Jones, T. and Abraham-Fuchs, K. and Apweiler, R. and Babic, a. and Baud, R. and Breton, V. and Cinquin, P. and Doupi, P. and Dugas, M. and Eils, R. and Engelbrecht, R. and Ghazal, P. and Jehenson, P. and Kulikowski, C. and Lampe, K. and {De Moor}, G. and Orphanoudakis, S. and Rossing, N. and Sarachan, B. and Sousa, a. and Spekowius, G. and Thireos, G. and Zahlmann, G. and Zv\'{a}rov\'{a}, J. and Hermosilla, I. and Vicente, F. J.},
doi = {10.1016/j.jbi.2003.09.003},
file = {:home/tomaton/Downloads/1-s2.0-S1532046403000856-main.pdf:pdf},
isbn = {1532-0464},
issn = {15320464},
journal = {Journal of Biomedical Informatics},
keywords = {Bioinformatics,Biomedical Informatics,Genomic medicine,Genomics,Medical informatics},
pages = {30--42},
pmid = {15016384},
title = {{Synergy between medical informatics and bioinformatics: Facilitating genomic medicine for future health care}},
volume = {37},
year = {2004}
}
@article{Frigo2005,
author = {Frigo, M. and Johnson, S.G.},
doi = {10.1109/JPROC.2004.840301},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Frigo, Johnson - 2005 - The Design and Implementation of FFTW3.pdf:pdf},
issn = {0018-9219},
journal = {Proceedings of the IEEE},
number = {2},
pages = {216--231},
title = {{The Design and Implementation of FFTW3}},
url = {http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=1386650},
volume = {93},
year = {2005}
}
@article{Krefting2010,
abstract = {In this paper, we describe the grid integration of medical image processing applications as grid workflows. The workflow management system is able to execute all tasks related to grid communication, such as authorization, scheduling and monitoring. It remains to the developer to make the code accessible for the workflow manager, and to define, what to do with it. Coarse-grained parallelization of processing steps for runtime reduction can easily be realized. We describe the procedure how to port the code to the grid and show exemplarily the integration of segmentation and registration algorithms for transrectal ultrasound guided prostate biopsies. ?? 2009 Elsevier B.V. All rights reserved.},
author = {Krefting, Dagmar and Vossberg, Michal and Hoheisel, Andreas and Tolxdorff, Thomas},
doi = {10.1016/j.future.2009.07.004},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Krefting et al. - 2010 - Simplified implementation of medical image processing algorithms into a grid using a workflow management system.pdf:pdf},
issn = {0167739X},
journal = {Future Generation Computer Systems},
keywords = {Healthgrids,Image processing software,Workflow management},
number = {4},
pages = {681--684},
publisher = {Elsevier B.V.},
title = {{Simplified implementation of medical image processing algorithms into a grid using a workflow management system}},
volume = {26},
year = {2010}
}
@article{AlvesDaSilva2007,
author = {{Alves Da Silva}, Alexandre P. and Falc\~{a}o, Djalma M.},
doi = {10.1002/9780470225868.ch2},
file = {:home/tomaton/Downloads/5396781.pdf:pdf},
isbn = {9780471457114},
journal = {Modern Heuristic Optimization Techniques: Theory and Applications to Power Systems},
keywords = {Character-based and real-valued encodings,Problem-specific operators definition,Thermal unit commitment},
pages = {25--42},
title = {{Fundamentals of Genetic Algorithms}},
year = {2007}
}
@article{Lu2014b,
author = {Lu, Shilin and Ranjan, Rajiv and Strazdins, Peter},
doi = {10.1002/cpe.3325},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Unknown - Unknown - HPCTOOLKIT Tools for performance analysis of optimized parallel programs.pdf:pdf},
issn = {15320626},
journal = {Concurrency and Computation: Practice and Experience},
month = jun,
pages = {n/a--n/a},
title = {{Reporting an experience on design and implementation of e-Health systems on Azure cloud}},
year = {2014}
}
@article{Kulhanek2011,
author = {Kulh\'{a}nek, Tom\'{a}\v{s}},
file = {:home/tomaton/Downloads/mefanet-report-2011.pdf:pdf},
isbn = {978-80-210-5539-1},
journal = {Mefanet Report},
pages = {69--72},
title = {{From Educational Models Towards Identification of Physiological Systems}},
url = {http://www.mefanet.cz/res/file/reporty/mefanet-report-2011.pdf},
volume = {04},
year = {2011}
}
@book{Li,
author = {Li, Xiaolin and Qiu, Judy},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/Li, Qiu - Unknown - Cloud Computing for Data Intensive Application.pdf:pdf},
isbn = {9781493919048},
publisher = {Springer},
title = {{Cloud Computing for Data Intensive Application}}
}
@article{Svec1996,
abstract = {A digital technique for high-speed visualization of vibration, called videokymography, was developed and applied to the vocal folds. The system uses a modified video camera able to work in two modes: high-speed (nearly 8,000 images/s) and standard (50 images/s in CCIR norm). In the high-speed mode, the camera selects one active horizontal line (transverse to the glottis) from the whole laryngeal image. The successive line images are presented in real time on a commercial TV monitor, filling each video frame from top to bottom. The system makes it possible to observe left-right asymmetries, open quotient, propagation of mucosal waves, movement of the upper and, in the closing phase, the lower margins of the vocal folds, etc. The technique is suitable for further processing and quantification of recorded vibration.},
author = {\v{S}vec, Jan G. and Schutte, Harm K.},
doi = {10.1016/S0892-1997(96)80047-6},
file = {:home/tomaton/.local/share/data/Mendeley Ltd./Mendeley Desktop/Downloaded/\v{S}vec, Schutte - 1996 - Videokymography High-speed line scanning of vocal fold vibration.pdf:pdf},
issn = {08921997},
journal = {Journal of Voice},
keywords = {High-speed imaging,Laryngoscopy,Stroboscopy,Vibration,Vibration study,Videokymography,Vocal fold vibration,Vocal folds},
number = {2},
pages = {201--205},
pmid = {8734395},
title = {{Videokymography: High-speed line scanning of vocal fold vibration}},
volume = {10},
year = {1996}
}
@book{Hurwitz2007,
author = {Hurwitz, Judith and Bloor, Robin and Baroudi, Carol and Kaufman, Marcia},
file = {:home/tomaton/Downloads/Service\_Oriented\_Architecture\_for\_DUMmIES.pdf:pdf},
isbn = {9780470054352},
pages = {376},
title = {{Service Oriented Architecture For Dummies}},
year = {2007}
}
@article{PlanckCollaboration2013,
abstract = {The ESA's Planck satellite, dedicated to studying the early Universe and its subsequent evolution, was launched 14 May 2009 and has been scanning the microwave and submillimetre sky continuously since 12 August 2009. This paper gives an overview of the mission and its performance, the processing, analysis, and characteristics of the data, the scientific results, and the science data products and papers in the release. The science products include maps of the CMB and diffuse extragalactic foregrounds, a catalogue of compact Galactic and extragalactic sources, and a list of sources detected through the SZ effect. The likelihood code used to assess cosmological models against the Planck data and a lensing likelihood are described. Scientific results include robust support for the standard six-parameter LCDM model of cosmology and improved measurements of its parameters, including a highly significant deviation from scale invariance of the primordial power spectrum. The Planck values for these parameters and others derived from them are significantly different from those previously determined. Several large-scale anomalies in the temperature distribution of the CMB, first detected by WMAP, are confirmed with higher confidence. Planck sets new limits on the number and mass of neutrinos, and has measured gravitational lensing of CMB anisotropies at greater than 25 sigma. Planck finds no evidence for non-Gaussianity in the CMB. Planck's results agree well with results from the measurements of baryon acoustic oscillations. Planck finds a lower Hubble constant than found in some more local measures. Some tension is also present between the amplitude of matter fluctuations derived from CMB data and that derived from SZ data. The Planck and WMAP power spectra are offset from each other by an average level of about 2\% around the first acoustic peak.},
author = {{Planck Collaboration} and Ade, P. a. R. and Aghanim, N. and Alves, M. I. R. and Armitage-Caplan, C. and Arnaud, M. and Ashdown, M. and Atrio-Barandela, F. and Aumont, J. and Aussel, H. and Baccigalupi, C. and Banday, a. J. and Barreiro, R. B. and Barrena, R. and Bartelmann, M. and Bartlett, J. G. and Bartolo, N. and Basak, S. and Battaner, E. and Battye, R. and Benabed, K. and Beno\^{\i}t, A. and Benoit-L\'{e}vy, A. and Bernard, J. -P. and Bersanelli, M. and Bertincourt, B. and Bethermin, M. and Bielewicz, P. and Bikmaev, I. and Blanchard, A. and Bobin, J. and Bock, J. J. and B\"{o}hringer, H. and Bonaldi, A. and Bonavera, L. and Bond, J. R. and Borrill, J. and Bouchet, F. R. and Boulanger, F. and Bourdin, H. and Bowyer, J. W. and Bridges, M. and Brown, M. L. and Bucher, M. and Burenin, R. and Burigana, C. and Butler, R. C. and Calabrese, E. and Cappellini, B. and Cardoso, J. -F. and Carr, R. and Carvalho, P. and Casale, M. and Castex, G. and Catalano, A. and Challinor, A. and Chamballu, A. and Chary, R. -R. and Chen, X. and Chiang, H. C. and Chiang, L. -Y and Chon, G. and Christensen, P. R. and Churazov, E. and Church, S. and Clemens, M. and Clements, D. L. and Colombi, S. and Colombo, L. P. L. and Combet, C. and Comis, B. and Couchot, F. and Coulais, A. and Crill, B. P. and Cruz, M. and Curto, A. and Cuttaia, F. and {Da Silva}, A. and Dahle, H. and Danese, L. and Davies, R. D. and Davis, R. J. and de Bernardis, P. and de Rosa, A. and de Zotti, G. and D\'{e}chelette, T. and Delabrouille, J. and Delouis, J. -M. and D\'{e}mocl\`{e}s, J. and D\'{e}sert, F. -X. and Dick, J. and Dickinson, C. and Diego, J. M. and Dolag, K. and Dole, H. and Donzelli, S. and Dor\'{e}, O. and Douspis, M. and Ducout, A. and Dunkley, J. and Dupac, X. and Efstathiou, G. and Elsner, F. and En\ss lin, T. a. and Eriksen, H. K. and Fabre, O. and Falgarone, E. and Falvella, M. C. and Fantaye, Y. and Fergusson, J. and Filliard, C. and Finelli, F. and Flores-Cacho, I. and Foley, S. and Forni, O. and Fosalba, P. and Frailis, M. and Fraisse, a. a. and Franceschi, E. and Freschi, M. and Fromenteau, S. and Frommert, M. and Gaier, T. C. and Galeotta, S. and Gallegos, J. and Galli, S. and Gandolfo, B. and Ganga, K. and Gauthier, C. and G\'{e}nova-Santos, R. T. and Ghosh, T. and Giard, M. and Giardino, G. and Gilfanov, M. and Girard, D. and Giraud-H\'{e}raud, Y. and Gjerl\o w, E. and Gonz\'{a}lez-Nuevo, J. and G\'{o}rski, K. M. and Gratton, S. and Gregorio, A. and Gruppuso, A. and Gudmundsson, J. E. and Haissinski, J. and Hamann, J. and Hansen, F. K. and Hansen, M. and Hanson, D. and Harrison, D. L. and Heavens, A. and Helou, G. and Hempel, A. and Henrot-Versill\'{e}, S. and Hern\'{a}ndez-Monteagudo, C. and Herranz, D. and Hildebrandt, S. R. and Hivon, E. and Ho, S. and Hobson, M. and Holmes, W. a. and Hornstrup, A. and Hou, Z. and Hovest, W. and Huey, G. and Huffenberger, K. M. and Hurier, G. and Ili\'{c}, S. and Jaffe, a. H. and Jaffe, T. R. and Jasche, J. and Jewell, J. and Jones, W. C. and Juvela, M. and Kalberla, P. and Kangaslahti, P. and Keih\"{a}nen, E. and Kerp, J. and Keskitalo, R. and Khamitov, I. and Kiiveri, K. and Kim, J. and Kisner, T. S. and Kneissl, R. and Knoche, J. and Knox, L. and Kunz, M. and Kurki-Suonio, H. and Lacasa, F. and Lagache, G. and L\"{a}hteenm\"{a}ki, A. and Lamarre, J. -M. and Langer, M. and Lasenby, A. and Lattanzi, M. and Laureijs, R. J. and Lavabre, A. and Lawrence, C. R. and Jeune, M. Le and Leach, S. and Leahy, J. P. and Leonardi, R. and Le\'{o}n-Tavares, J. and Leroy, C. and Lesgourgues, J. and Lewis, A. and Li, C. and Liddle, A. and Liguori, M. and Lilje, P. B. and Linden-V\o rnle, M. and Lindholm, V. and L\'{o}pez-Caniego, M. and Lowe, S. and Lubin, P. M. and Mac\'{\i}as-P\'{e}rez, J. F. and MacTavish, C. J. and Maffei, B. and Maggio, G. and Maino, D. and Mandolesi, N. and Mangilli, A. and Marcos-Caballero, A. and Marinucci, D. and Maris, M. and Marleau, F. and Marshall, D. J. and Martin, P. G. and Mart\'{\i}nez-Gonz\'{a}lez, E. and Masi, S. and Massardi, M. and Matarrese, S. and Matsumura, T. and Matthai, F. and Maurin, L. and Mazzotta, P. and McDonald, A. and McEwen, J. D. and McGehee, P. and Mei, S. and Meinhold, P. R. and Melchiorri, A. and Melin, J. -B. and Mendes, L. and Menegoni, E. and Mennella, A. and Migliaccio, M. and Mikkelsen, K. and Millea, M. and Miniscalco, R. and Mitra, S. and Miville-Desch\^{e}nes, M. -a. and Molinari, D. and Moneti, A. and Montier, L. and Morgante, G. and Morisset, N. and Mortlock, D. and Moss, A. and Munshi, D. and Murphy, J. a. and Naselsky, P. and Nati, F. and Natoli, P. and Negrello, M. and Nesvadba, N. P. H. and Netterfield, C. B. and N\o rgaard-Nielsen, H. U. and North, C. and Noviello, F. and Novikov, D. and Novikov, I. and O'Dwyer, I. J. and Orieux, F. and Osborne, S. and O'Sullivan, C. and Oxborrow, C. a. and Paci, F. and Pagano, L. and Pajot, F. and Paladini, R. and Pandolfi, S. and Paoletti, D. and Partridge, B. and Pasian, F. and Patanchon, G. and Paykari, P. and Pearson, D. and Pearson, T. J. and Peel, M. and Peiris, H. V. and Perdereau, O. and Perotto, L. and Perrotta, F. and Pettorino, V. and Piacentini, F. and Piat, M. and Pierpaoli, E. and Pietrobon, D. and Plaszczynski, S. and Platania, P. and Pogosyan, D. and Pointecouteau, E. and Polenta, G. and Ponthieu, N. and Popa, L. and Poutanen, T. and Pratt, G. W. and Pr\'{e}zeau, G. and Prunet, S. and Puget, J. -L. and Pullen, a. R. and Rachen, J. P. and Racine, B. and Rahlin, A. and R\"{a}th, C. and Reach, W. T. and Rebolo, R. and Reinecke, M. and Remazeilles, M. and Renault, C. and Renzi, A. and Riazuelo, A. and Ricciardi, S. and Riller, T. and Ringeval, C. and Ristorcelli, I. and Robbers, G. and Rocha, G. and Roman, M. and Rosset, C. and Rossetti, M. and Roudier, G. and Rowan-Robinson, M. and Rubi\~{n}o-Mart\'{\i}n, J. a. and Ruiz-Granados, B. and Rusholme, B. and Salerno, E. and Sandri, M. and Sanselme, L. and Santos, D. and Savelainen, M. and Savini, G. and Schaefer, B. M. and Schiavon, F. and Scott, D. and Seiffert, M. D. and Serra, P. and Shellard, E. P. S. and Smith, K. and Smoot, G. F. and Souradeep, T. and Spencer, L. D. and Starck, J. -L. and Stolyarov, V. and Stompor, R. and Sudiwala, R. and Sunyaev, R. and Sureau, F. and Sutter, P. and Sutton, D. and Suur-Uski, a. -S. and Sygnet, J. -F. and Tauber, J. a. and Tavagnacco, D. and Taylor, D. and Terenzi, L. and Texier, D. and Toffolatti, L. and Tomasi, M. and Torre, J. -P. and Tristram, M. and Tucci, M. and Tuovinen, J. and T\"{u}rler, M. and Tuttlebee, M. and Umana, G. and Valenziano, L. and Valiviita, J. and {Van Tent}, B. and Varis, J. and Vibert, L. and Viel, M. and Vielva, P. and Villa, F. and Vittorio, N. and Wade, L. a. and Wandelt, B. D. and Watson, C. and Watson, R. and Wehus, I. K. and Welikala, N. and Weller, J. and White, M. and White, S. D. M. and Wilkinson, A. and Winkel, B. and Xia, J. -Q. and Yvon, D. and Zacchei, A. and Zibin, J. P. and Zonca, A.},
doi = {10.1051/0004-6361/201321529},
file = {:home/tomaton/Downloads/1303.5062v2.pdf:pdf},
month = mar,
title = {{Planck 2013 results. I. Overview of products and scientific results}},
year = {2013}
}
@article{Kuba2006,
abstract = {Today, applications for Grids emerge in various scientific fields, each with specific requirements. We present concept and architecture which enables biomedical experts to collaborate and share resources by encapsulating their knowledge and expertise as grid services, with (semi-)formally described semantics. Grid Services allow machine processing of the encapsulated knowledge, while their semantic description provides means for their automated discovery and interaction. This brings new possibilities of building biomedical systems offering machine-driven assistance to the biomedical experts.},
author = {Kuba, Martin and Kraj\'{\i}cek, Ondrej and Lesn\'{y}, Petr and Vejvalka, Jan and Holecek, Tom\'{a}s},
file = {:home/tomaton/Downloads/fulltext.pdf:pdf},
issn = {0926-9630},
journal = {Studies in health technology and informatics},
pages = {273--282},
pmid = {16823145},
title = {{Grid empowered sharing of medical expertise.}},
volume = {120},
year = {2006}
}
@book{Levesque2010,
abstract = {High Performance Computing: Programming and Applications presents techniques that address new performance issues in the programming of high performance computing (HPC) applications. Omitting tedious details, the book discusses hardware architecture concepts and programming techniques that are the most pertinent to application developers for achieving high performance. Even though the text concentrates on C and Fortran, the techniques described can be applied to other languages, such as C++ and Java. Drawing on their experience with chips from AMD and systems, interconnects, and software from Cray Inc., the authors explore the problems that create bottlenecks in attaining good performance. They cover techniques that pertain to each of the three levels of parallelism: Message passing between the nodes Shared memory parallelism on the nodes or the multiple instruction, multiple data (MIMD) units on the accelerator Vectorization on the inner level After discussing architectural and software challenges, the book outlines a strategy for porting and optimizing an existing application to a large massively parallel processor (MPP) system. With a look toward the future, it also introduces the use of general purpose graphics processing units (GPGPUs) for carrying out HPC computations. A companion website at www.hybridmulticoreoptimization.com contains all the examples from the book, along with updated timing results on the latest released processors.},
author = {Levesque, John and Wagenbreth, Gene},
isbn = {1420077066},
pages = {244},
publisher = {CRC Press},
title = {{High Performance Computing: Programming and Applications}},
year = {2010}
}
@article{Marozzo2011,
abstract = {Data mining techniques are used in many application areas to extract useful knowledge from large datasets. Very often, parameter sweeping is used in data mining applications to explore the effects produced on the data analysis result by different values of the algorithm parameters. Parameter sweeping applications can be highly computing demanding, since the number of single tasks to be executed increases with the number of swept parameters and the range of their values. Cloud technologies can be effectively exploited to provide end-users with the computing and storage resources, and the execution mechanisms needed to efficiently run this class of applications. In this paper, we present a Data Mining Cloud App framework that supports the execution of parameter sweeping data mining applications on a Cloud. The framework has been implemented using the Windows Azure platform, and evaluated through a set of parameter sweeping clustering and classification applications. The experimental results demonstrate the effectiveness of the proposed framework, as well as the scalability that can be achieved through the parallel execution of parameter sweeping applications on a pool of virtual servers.},
author = {Marozzo, Fabrizio and Talia, Domenico and Trunfio, Paolo},
doi = {10.1109/CloudCom.2011.56},
file = {:home/tomaton/Downloads/06133165.pdf:pdf},
isbn = {9780769546223},
journal = {Proceedings - 2011 3rd IEEE International Conference on Cloud Computing Technology and Science, CloudCom 2011},
keywords = {Cloud computing,Data mining,Parameter sweeping},
pages = {367--374},
title = {{A cloud framework for parameter sweeping data mining applications}},
year = {2011}
}
@inproceedings{Foster1998,
address = {New York, New York, USA},
author = {Foster, Ian and Kesselman, Carl and Tsudik, Gene and Tuecke, Steven},
booktitle = {Proceedings of the 5th ACM conference on Computer and communications security - CCS '98},
doi = {10.1145/288090.288111},
file = {:home/tomaton/Downloads/p83-foster.pdf:pdf},
isbn = {1581130074},
month = nov,
pages = {83--92},
publisher = {ACM Press},
title = {{A security architecture for computational grids}},
year = {1998}
}
@article{Javornik2011,
author = {Javornik, Michal and Dostal, Otto and Slavicek, Karel},
file = {:home/tomaton/Downloads/Regional-Medical-Imaging-System.pdf:pdf},
keywords = {dicom,integration,medical,medical education},
number = {7},
pages = {374--378},
title = {{Regional Medical Imaging System}},
volume = {5},
year = {2011}
}


text:
@misc{lane2019online,
  title={Online Statistics Education: An Interactive Multimedia Course
                  of Study},
 author={David M. Lane and Georgette Baghdady and Evan Brott and Katie Bruton and Madeline Campbell and Patrick Connell and Tina Galante and Paul Giguere and Rudy Guerra and Daniel Hatfield and Mikki Hebl and Robert F. Houser and W. Sloane Hoyle and Jo Jardina and Andrew Kennedy and Jennifer E. Konick and Alyssa Koomas and David Lane and Joan Lu and Hanqi Luo and aniel Osherson and Lauren Pemberton and Camille Peres and Anikó Sándor and David Scott and Alex Shabad and Zhihua Tang and Sebastian Thomas and Katherine Vasser and Heidi Ziemer and Emily Zitek},
 year={2019},
 howpublished={http://onlinestatbook.com/2/index.html},
 note = {[Accessed May 5, 2019]}
}

license_type: permissive

branch_name: refs/heads/master

extension: bib


text:
set(VCPKG_TARGET_ARCHITECTURE arm64)
set(VCPKG_CRT_LINKAGE static)
set(VCPKG_LIBRARY_LINKAGE static)

license: MIT

repository: VITObelgium/vcpkg-ports

repo_name: VITObelgium/vcpkg-ports

extension: cmake


text:
#form {
  width: 150px;
  margin: 0 auto;
  height: 50px;
}

#form p {
  text-align: center;
}

#form label {
  font-size: 20px;
}

input[type="radio"] {
  display: none;
}

label {
  color: grey;
}

.clasificacion {
  direction: rtl;
  unicode-bidi: bidi-override;
}

.estrella{
  color: orange;
}

.box {
  width: 100%;

  height: 100%;

  display: flex;

  flex-direction: row;

}

@media all and (max-width: 1000px) {
  .box {
    width: 100%;

    height: 100%;

    display: flex;

    flex-direction: column;

    justify-content: space-between;
  }

}

repository: jemprojects/animeList

repo_name: jemprojects/animeList

gha_license_id: MIT

gha_language: TypeScript

extension: css


text:
@article{DBLP:journals/corr/abs-1802-04208,
  author    = {Chris Donahue and
               Julian McAuley and
               Miller Puckette},
  title     = {Synthesizing Audio with Generative Adversarial Networks},
  journal   = {CoRR},
  volume    = {abs/1802.04208},
  year      = {2018},
  url       = {http://arxiv.org/abs/1802.04208},
  archivePrefix = {arXiv},
  eprint    = {1802.04208},
  timestamp = {Mon, 13 Aug 2018 16:48:55 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1802-04208},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}


text:
SUMMARY = "Interaction with XMLRPC services"
LICENSE = "BSD"
LIC_FILES_CHKSUM = " \
	file://COPYING.BSD;md5=5c262c13b60ebefe3060aed37d334ab6 \
"

inherit kde-kf5 gettext

DEPENDS += "ki18n kio kcoreaddons-native kconfig-native kauth-native"

PV = "${KF5_VERSION}"
SRC_URI[md5sum] = "36d5ea545b972d275b4fde563202fed3"
SRC_URI[sha256sum] = "06c0dc10623ecb1b844c47577a53229c7d5789f895902fda9ef21c7decb69250"

extension: bb


text:
@article{magin_gp_2015,
 abstract = {BACKGROUND: Answering clinical questions arising from patient care can improve that care and offers an opportunity for adult learning. It is also a vital component in practising evidence-based medicine. GPs' sources of in-consultation information can be human or non-human (either hard copy or electronic). OBJECTIVES: To establish the prevalence and associations of GP trainees' in-consultation information-seeking, and to establish the prevalence of use of different sources of information (human, hard copy and electronic) and the associations of choosing particular sources. METHODS: A cross-sectional analysis of data (2010-13) from an ongoing cohort study of Australian GP trainees' consultations. Once each 6-month training term, trainees record detailed data of 60 consecutive consultations. The primary outcome was whether the trainee sought in-consultation information for a problem/diagnosis. Secondary outcomes were whether information-seeking was from a human (GP, other specialist or other health professional) or from a non-human source (electronic or hard copy), and whether a non-human source was electronic or hard copy. RESULTS: Six hundred forty-five trainees (response rate 94.3%) contributed data for 84 723 consultations including 131 583 problems/diagnoses. In-consultation information was sought for 15.4% (95% confidence interval = 15.3-15.6) of problems/diagnoses. Sources were: GP in 6.9% of problems/diagnoses, other specialists 0.9%, other health professionals 0.6%, electronic sources 6.5% and hard-copy sources 1.5%. Associations of information-seeking included younger patient age, trainee full-time status and earlier training stage, longer consultation duration, referring the patient, organizing follow-up and generating learning goals. Associations of choosing human information sources (over non-human sources) were similar, but also included the trainee's training organization. Associations of electronic rather than hard-copy information-seeking included the trainee being younger, the training organization and information-seeking for management rather than diagnosis. CONCLUSION: Trainee information-seeking is mainly from GP colleagues and electronic sources. Human information-sources are preferentially sought for more complex problems, even by these early-career GPs who have trained in the 'internet era'.},
 author = {Magin, P. and Morgan, S. and Wearne, S. and Tapley, A. and Henderson, K. and Oldmeadow, C. and Ball, J. and Scott, J. and Spike, N. and McArthur, L. and van Driel, M.},
 doi = {10.1093/fampra/cmv047},
 issn = {1460-2229},
 journal = {Family Practice},
 month = {June},
 note = {Publisher: Oxford},
 number = {5},
 pages = {525--532},
 title = {GP trainees' in-consultation information-seeking: associations with human, paper and electronic sources.},
 volume = {32},
 year = {2015}
}

repository: ChrisOldmeadow/academic-kickstart

repo_name: ChrisOldmeadow/academic-kickstart


text:
#scoreboard {
}

#statTicker {
}

#createGame {
    margin: 0px auto;
}

#opponent {
    height: 38px;
    font-size: 24px;
    margin-top: 18px;
    margin-bottom: 10px;
}

.col-md-2 {
    padding-left: 1px;
    padding-right: 1px;
    padding-top : 10px;
}

svg text {
    cursor: default;
    user-select: none;
    -webkit-user-select: none;
}

.big-button {
    text-align: center;
}


text:
@Manual{dlbcl_package,
title = {DLBCL: Diffuse large B-cell lymphoma expression data},
author = {Marcus Dittrich and Daniela Beisser},
year = {2010},
note = {R package version 1.16.0},
url = {http://bionet.bioapps.biozentrum.uni-wuerzburg.de/},
}

@article{hprd,
  title={Human protein reference database—2006 update},
  author={Mishra, Gopa R and Suresh, M and Kumaran, K and Kannabiran, N and Suresh, Shubha and Bala, P and Shivakumar, K and Anuradha, N and Reddy, Raghunath and Raghavan, T Madhan and others},
  journal={Nucleic acids research},
  volume={34},
  number={suppl\_1},
  pages={D411--D414},
  year={2006},
  publisher={Oxford University Press}
}

@article{bionet,
  title={Identifying functional modules in protein--protein interaction networks: an integrated exact approach},
  author={Dittrich, Marcus T and Klau, Gunnar W and Rosenwald, Andreas and Dandekar, Thomas and M{\"u}ller, Tobias},
  journal={Bioinformatics},
  volume={24},
  number={13},
  pages={i223--i231},
  year={2008},
  publisher={Oxford University Press}
}

@article{kegg2017,
  title={KEGG: new perspectives on genomes, pathways, diseases and drugs},
  author={Kanehisa, Minoru and Furumichi, Miho and Tanabe, Mao and Sato, Yoko and Morishima, Kanae},
  journal={Nucleic acids research},
  volume={45},
  number={D1},
  pages={D353--D361},
  year={2017},
  publisher={Oxford University Press}
}

@article{fdr,
  title={Controlling the false discovery rate: a practical and powerful approach to multiple testing},
  author={Benjamini, Yoav and Hochberg, Yosef},
  journal={Journal of the royal statistical society. Series B (Methodological)},
  pages={289--300},
  year={1995},
  publisher={JSTOR}
}

@article{all_array,
  title={Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival},
  author={Chiaretti, Sabina and Li, Xiaochun and Gentleman, Robert and Vitale, Antonella and Vignetti, Marco and Mandelli, Franco and Ritz, Jerome and Foa, Robin},
  journal={Blood},
  volume={103},
  number={7},
  pages={2771--2778},
  year={2004},
  publisher={Am Soc Hematology}
}

@Manual{all_package,
  title = {ALL: A data package},
  author = {Xiaochun Li},
  year = {2009},
  note = {R package version 1.20.0},
}

@article{lym_array,
  title={The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma},
  author={Rosenwald, Andreas and Wright, George and Chan, Wing C and Connors, Joseph M and Campo, Elias and Fisher, Richard I and Gascoyne, Randy D and Muller-Hermelink, H Konrad and Smeland, Erlend B and Giltnane, Jena M and others},
  journal={New England Journal of Medicine},
  volume={346},
  number={25},
  pages={1937--1947},
  year={2002},
  publisher={Mass Medical Soc}
}

@Manual{dlbcl_package,
title = {DLBCL: Diffuse large B-cell lymphoma expression data},
author = {Marcus Dittrich and Daniela Beisser},
year = {2010},
note = {R package version 1.16.0},
url = {http://bionet.bioapps.biozentrum.uni-wuerzburg.de/},
}

gha_language: HTML


text:
SUMMARY = "Tzinfo object for the local timezone"
HOMEPAGE = "https://pypi.python.org/pypi/tzlocal"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=57e0bd61643d81d05683cdce65b11d10"

SRC_URI[md5sum] = "4553be891efa0812c4adfb0c6e818eec"
SRC_URI[sha256sum] = "4ebeb848845ac898da6519b9b31879cf13b6626f7184c496037b818e238f2c4e"

inherit pypi setuptools3

PYPI_PACKAGE = "tzlocal"

RDEPENDS_${PN} += "python3-pytz"


text:
@misc{Dua2019,
  author = "Dua, Dheeru and Graff, Casey",
  year = "2017",
  title = "{UCI} Machine Learning Repository",
  url = "http://archive.ics.uci.edu/ml",
  institution = "University of California, Irvine, School of Information and Computer Sciences"
}

@book{Python,
  author = {Van Rossum, Guido and Drake, Fred L.},
  title = {Python 3 Reference Manual},
  year = {2009},
  isbn = {1441412697},
  publisher = {CreateSpace},
  address = {Scotts Valley, CA}
}

@Manual{docoptpython,
    title = {docopt: Command-line interface description language},
    author = {Vladimir Keleshev},
    year = {2014},
    note = {Python package version 0.6.2},
    url = {https://github.com/docopt/docopt}
}

@inproceedings{pandas,
  title={Data structures for statistical computing in python},
  author={McKinney, Wes and others},
  booktitle={Proceedings of the 9th Python in Science Conference},
  volume={445},
  pages={51--56},
  year={2010},
  organization={Austin, TX}
}

@software{seaborn,
  author       = {Michael Waskom and
                  Olga Botvinnik and
                  Drew O'Kane and
                  Paul Hobson and
                  Saulius Lukauskas and
                  David C Gemperline and
                  Tom Augspurger and
                  Yaroslav Halchenko and
                  John B. Cole and
                  Jordi Warmenhoven and
                  Julian de Ruiter and
                  Cameron Pye and
                  Stephan Hoyer and
                  Jake Vanderplas and
                  Santi Villalba and
                  Gero Kunter and
                  Eric Quintero and
                  Pete Bachant and
                  Marcel Martin and
                  Kyle Meyer and
                  Alistair Miles and
                  Yoav Ram and
                  Tal Yarkoni and
                  Mike Lee Williams and
                  Constantine Evans and
                  Clark Fitzgerald and
                  Brian and
                  Chris Fonnesbeck and
                  Antony Lee and
                  Adel Qalieh},
  title        = {mwaskom/seaborn: v0.8.1 (September 2017)},
  month        = sep,
  year         = 2017,
  publisher    = {Zenodo},
  version      = {v0.8.1},
  doi          = {10.5281/zenodo.883859},
  url          = {https://doi.org/10.5281/zenodo.883859}
}

@article{sklearn,
  title={Scikit-learn: Machine learning in Python},
  author={Pedregosa, Fabian and Varoquaux, Ga{\"e}l and Gramfort, Alexandre and Michel, Vincent and Thirion, Bertrand and Grisel, Olivier and Blondel, Mathieu and Prettenhofer, Peter and Weiss, Ron and Dubourg, Vincent and others},
  journal={Journal of machine learning research},
  volume={12},
  number={Oct},
  pages={2825--2830},
  year={2011}
}

@book{numpy,
  title={A guide to NumPy},
  author={Oliphant, Travis E},
  volume={1},
  year={2006},
  publisher={Trelgol Publishing USA}
}

@book{pickle,
  title={The Python Library Reference, release 3.8.2},
  author={Van Rossum, Guido},
  year={2020},
  publisher={Python Software Foundation}
}

@article{hunter2007matplotlib,
  title={Matplotlib: A 2D graphics environment},
  author={Hunter, John D},
  journal={Computing in science \& engineering},
  volume={9},
  number={3},
  pages={90--95},
  year={2007},
  publisher={IEEE}
}

@Manual{R,
    title = {R: A Language and Environment for Statistical Computing},
    author = {{R Core Team}},
    organization = {R Foundation for Statistical Computing},
    address = {Vienna, Austria},
    year = {2019},
    url = {https://www.R-project.org/},
  }

@InCollection{knitr,
    booktitle = {Implementing Reproducible Computational Research},
    editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
    title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
    author = {Yihui Xie},
    publisher = {Chapman and Hall/CRC},
    year = {2014},
    note = {ISBN 978-1466561595},
    url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Manual{reticulate,
    author = {JJ Allaire and Kevin Ushey and Yuan Tang and Dirk
      Eddelbuettel},
    title = {reticulate: R Interface to Python},
    year = {2017},
    url = {https://github.com/rstudio/reticulate},
}

@article{abalone,
author = {Peter A. Cook and H. Roy Gordon},
title = {{World Abalone Supply, Markets, and Pricing}},
volume = {29},
journal = {Journal of Shellfish Research},
number = {3},
publisher = {National Shellfisheries Association},
pages = {569 -- 571},
keywords = {Abalone, pricing, supply, world markets},
year = {2010},
doi = {10.2983/035.029.0303},
URL = {https://doi.org/10.2983/035.029.0303}
}

@article{kiers2007comparison,
  title={A comparison of various methods for multivariate regression with highly collinear variables},
  author={Kiers, Henk AL and Smilde, Age K},
  journal={Statistical Methods and Applications},
  volume={16},
  number={2},
  pages={193--228},
  year={2007},
  publisher={Springer}
}

branch_name: refs/heads/main

gha_language: Jupyter Notebook


text:
@inbook{las-2013-fg-bookchapter,
 address = {Boca Raton, FL},
 author = {Fox, Geoffrey C and von Laszewski, Gregor and Diaz, Javier and Keahey, Kate and Fortes, Jose and Figueiredo, Renato and Smallen, Shava and Smith, Warren and Grimshaw, Andrew},
 chapter = {Futuregrid: a Reconfigurable Testbed for Cloud, HPC and Grid Computing},
 edition = {1},
 editor = {Vetter, Jeffrey S.},
 isbn = {9781351104005},
 note = {republished in 2018},
 pages = {603--636},
 publisher = {Chapman and Hall/CRC},
 title = {Contemporary High Performance Computing},
 url = {https://laszewski.github.io/papers/vonLaszewski-12-fg-bookchapter.pdf},
 urlother1 = {https://www.taylorfrancis.com/chapters/edit/10.1201/9781351104005-23/futuregrid-reconfigurable-testbed-cloud-hpc-grid-computing-geoffrey-fox-gregor-von-laszewski-javier-diaz-kate-keahey-jose-fortes-renato-figueiredo-shava-smallen-warren-smith-andrew-grimshaw},
 volume = {1},
 year = {2013}
}


text:
require qt-in-use-common.inc

QT_NAME = "qt4"

IMAGE_INSTALL = " \
    ${COMMON_INSTALL} \
    \
    ${XSERVER} \
    ${QT_DEMOS} \
    packagegroup-core-x11 \
    xorg-minimal-fonts \
    liberation-fonts \
    qt4-graphics-system \
    qt-in-industrial-embedded-smarthome \
"
ROOTFS_POSTPROCESS_COMMAND += "(cd ${IMAGE_ROOTFS}/usr/bin ; \
                                ln -s smarthome x-window-manager );"


text:
require u-boot-ti.inc

DESCRIPTION = "Mainline u-boot bootloader"

DEFAULT_PREFERENCE = "-1"

PR = "r1"

SRC_URI = "git://git.denx.de/u-boot.git;protocol=git;branch=${BRANCH}"

BRANCH ?= "u-boot-2013.01.y"

SRCREV = "e8ae0fa5edd152b2b29c470b88429be4cdcd2c46"

SPL_BINARY = "MLO"

repository: Angstrom-distribution/meta-ti

repo_name: Angstrom-distribution/meta-ti

gha_language: BlitzBasic


text:
@article{campos2014grasp,
 author = {Campos, Vicente and Martı́, Rafael and Sánchez-Oro, Jesús and Duarte, Abraham},
 journal = {Journal of the Operational Research Society},
 number = {12},
 pages = {1800--1813},
 publisher = {Palgrave Macmillan UK},
 title = {GRASP with path relinking for the orienteering problem},
 volume = {65},
 year = {2014}
}

repository: jesussanchezoro/academic-kickstart

repo_name: jesussanchezoro/academic-kickstart


text:
#cms_body .file_uploads form {
  position: relative;
  height: 21px;
  overflow: hidden;
  margin-bottom: 5px;
}
#cms_body .file_uploads form input {
  position: absolute;
  margin-top: -1px;
  right: 0px;
  top: 0px;
  font-size: 220px;
  opacity: 0;
}
#cms_body .uploaded_files {
  max-height: 500px;
  overflow: auto;
}
#cms_body .uploaded_files .file {
  overflow: hidden;
}
#cms_body .uploaded_files .file .file_name {
  background-color: #252525;
  font: 11px/11px Arial, sans-serif;
  height: 11px;
  padding: 3px 5px;
  border-top: 1px solid #484848;
  border-radius: 2px;
}
#cms_body .uploaded_files .file:hover .file_name {
  background-color: #000;
}
#cms_body .uploaded_files .file .file_name a.filename {
  width: 180px;
  white-space: nowrap;
  overflow: hidden;
  float: left;
  color: #8a8a8a;
}
#cms_body .uploaded_files .file .file_name a.delete {
  float: right;
  height: 11px;
  width: 11px;
  background: url(/assets/comfortable_mexican_sofa/x.png);
}
#cms_body .file_uploads .file a.delete:hover {
  background-position: 0px 11px;
}
#cms_body .uploaded_files .file .file_name a.delete span {
  display: none;
}
#cms_body .uploaded_files .file .file_info {
  display: none;
  overflow: hidden;
  font: 11px/18px Arial, sans-serif;
  background-color: #484848;
  border: 1px solid #252525;
  border-top: 0px;
  padding: 2px;
}
#cms_body .uploaded_files .file:hover .file_info {
  display: block;
}
#cms_body .uploaded_files .file .file_info .thumb {
  float: left;
  height: 60px;
  width: 80px;
  background: url(/assets/comfortable_mexican_sofa/checkerboard.gif);
}
#cms_body .uploaded_files .file .file_info .thumb img {
  display: block;
}
#cms_body .uploaded_files .file .file_info .details {
  margin-left: 85px;
  color: #eee;
}
#cms_body .uploaded_files .file .file_info .details input {
  border: 0px;
  width: 100%;
  background-color: #e6e6e6;
  margin-bottom: 3px;
}

repository: toreyheinz/comfortable-mexican-sofa

repo_name: toreyheinz/comfortable-mexican-sofa

gha_language: Ruby


text:
DESCRIPTION = "A GTK+ interface to MPlayer"
HOMEPAGE = "http://code.google.com/p/gnome-mplayer"
SECTION = "multimedia"

LICENSE = "GPLv2+"
LIC_FILES_CHKSUM = "file://COPYING;md5=59530bdf33659b29e73d4adb9f9f6552"

DEPENDS = "gmtk gtk+ alsa-lib libnotify glib-2.0 dbus-glib virtual/libx11 libxscrnsaver"

SRC_URI = "http://${PN}.googlecode.com/files/${P}.tar.gz"
SRC_URI[md5sum] = "1d3ab24c5501b5528e357931ca4dc6da"
SRC_URI[sha256sum] = "ac3c179345baecb4ca5237782aa33e83253a87bf8b42ce6eb3a9207a340f61b2"

EXTRA_OECONF = "--with-gio --with-alsa --with-dbus --with-libnotify"

FILES_${PN} += "${datadir}/gnome-control-center/default-apps/${PN}.xml"

inherit gettext pkgconfig mime gtk-icon-cache autotools

RDEPENDS_${PN} = "mplayer"


text:
@article{rumelhart1988learning,
  title={Learning representations by back-propagating errors},
  author={Rumelhart, David E and Hinton, Geoffrey E and Williams, Ronald J and others},
  journal={Cognitive modeling},
  volume={5},
  number={3},
  pages={1},
  year={1988}
}
@misc{DeepLear69:online,
author = {},
title = {Deep Learning 101 - Part 1: History and Background},
howpublished = {\url{https://beamandrew.github.io/deeplearning/2017/02/23/deep_learning_101_part1.html}},
month = {},
year = {},
note = {(Accessed on 10/12/2017)}
}
@article{DBLP:journals/corr/McMahanMRA16,
  author    = {H. Brendan McMahan and
               Eider Moore and
               Daniel Ramage and
               Blaise Ag{\"{u}}era y Arcas},
  title     = {Federated Learning of Deep Networks using Model Averaging},
  journal   = {CoRR},
  volume    = {abs/1602.05629},
  year      = {2016},
  url       = {http://arxiv.org/abs/1602.05629},
  timestamp = {Wed, 07 Jun 2017 14:40:19 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/McMahanMRA16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/KonecnyMYRSB16,
  author    = {Jakub Konecn{\'{y}} and
               H. Brendan McMahan and
               Felix X. Yu and
               Peter Richt{\'{a}}rik and
               Ananda Theertha Suresh and
               Dave Bacon},
  title     = {Federated Learning: Strategies for Improving Communication Efficiency},
  journal   = {CoRR},
  volume    = {abs/1610.05492},
  year      = {2016},
  url       = {http://arxiv.org/abs/1610.05492},
  timestamp = {Wed, 07 Jun 2017 14:41:11 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/KonecnyMYRSB16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/KonecnyMRR16,
  author    = {Jakub Konecn{\'{y}} and
               H. Brendan McMahan and
               Daniel Ramage and
               Peter Richt{\'{a}}rik},
  title     = {Federated Optimization: Distributed Machine Learning for On-Device
               Intelligence},
  journal   = {CoRR},
  volume    = {abs/1610.02527},
  year      = {2016},
  url       = {http://arxiv.org/abs/1610.02527},
  timestamp = {Wed, 07 Jun 2017 14:42:24 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/KonecnyMRR16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@misc{cryptoeprint:2017:281,
    author = {Keith Bonawitz and Vladimir Ivanov and Ben Kreuter and Antonio Marcedone and H. Brendan McMahan and Sarvar Patel and Daniel Ramage and Aaron Segal and Karn Seth},
    title = {Practical Secure Aggregation for Privacy Preserving Machine Learning},
    howpublished = {Cryptology ePrint Archive, Report 2017/281},
    year = {2017},
    note = {\url{http://eprint.iacr.org/2017/281}},
}
@inproceedings{krizhevsky2012imagenet,
  title={Imagenet classification with deep convolutional neural networks},
  author={Krizhevsky, Alex and Sutskever, Ilya and Hinton, Geoffrey E},
  booktitle={Advances in neural information processing systems},
  pages={1097--1105},
  year={2012}
}

repository: prajnak/talks

repo_name: prajnak/talks


text:
@misc{Harper2009dq,
 abstract = {The Web is changing. The much vaunted Web 2.0 sees once static pages evolving into hybrid applications. Content which was once simple to surf is now becoming increasingly complicated due to the many updating components `dotted' throughout the page. The information overload and visual complexity is significant. However the sites most effected by these changes are often the most popular for social interaction. Sites such as Flicker, YouTube, MySpace, Facebook, and Google Maps, as well as portals such as Virgin, Yahoo, and Google Portal all rely on these new components and are all popular with older users. This increased complexity is a major problem for an ageing population of `knowledge workers' expected to work longer into old age. Indeed, we already know that seniors experience an increased cautiousness and a hesitancy about making responses that may be incorrect. In `noisy' information environments this increased complexity produces lower performance and higher levels of stress and frustration which negatively effect both work and social activity. Without a full understanding of the interaction of older people with Web 2.0 technologies the Web will rapidly become unable to support their interaction needs. Only by a deep understanding of this interaction can we propose assistive solutions. Therefore, our objective is to create a cognitive model of ageing users' Web 2.0 interactivity and suggest interventions, realised as an experimental assistive-advisor, to overcome their interactivity problems.},
 author = {Harper, Simon},
 institution = {The Leverhulme Trust},
 keywords = {Accessibility,Human Centred Web,SCWeb2,Seniors,Web 2.0,Web Accessibility},
 month = {jan},
 title = {SCWeb2: Senior Citizens and the Web 2.0},
 url = {http://www.leverhulme.ac.uk/news/recent/Grants_Awarded_July_2008},
 year = {2009}
}

repository: sharpic/academic-kickstart

repo_name: sharpic/academic-kickstart


text:
@incollection{hickey2013large,
 author = {Hickey, Jean-Pierre and Ma, Peter C and Ihme, Matthias and Thakur, Siddharth S},
 booktitle = {49th AIAA/ASME/SAE/ASEE Joint PropulsionConference},
 pages = {4071},
 title = {Large eddy simulation of shear coaxial rocket injector: Real fluid effects},
 year = {2013}
}

repository: mpilab-uw/mpilab

repo_name: mpilab-uw/mpilab


text:
DESCRIPTION = "Video Analytics demo descriptions for Matrix v2"

require recipes-core/matrix/matrix-gui-apps-git.inc

PR = "${INC_PR}.0"

inherit allarch

S = "${WORKDIR}/git/videoanalytics_apps"

# Make sure video analytics submenu and app images has been installed
VIDEO_ANALYTICS_DEMO_RDEPENDS += " \
    matrix-gui-apps-images \
    matrix-gui-submenus-videoanalytics \
"

PACKAGES = "matrix-video-analytics-opencv-opencl-opengl-demo \
"

#    ${@['','qt-opencv-opencl-opengl-multithreaded'][oe.utils.all_distro_features(d, 'opencv opencl opengl', True, False) and bb.utils.contains('MACHINE_FEATURES', 'dsp', True, False, d)]}
RDEPENDS:matrix-video-analytics-opencv-opencl-opengl-demo = " \
    ${VIDEO_ANALYTICS_DEMO_RDEPENDS} \
"

# Split the matrix files by demos
FILES:matrix-video-analytics-opencv-opencl-opengl-demo = " \
    ${MATRIX_APP_DIR}/videoanalytics_opencv_opencl_opengl_demo/* \
"

repository: rcn-ee/meta-arago

repo_name: rcn-ee/meta-arago


text:
@inproceedings{demo2018isope,
	Author = {Demo, Nicola and Tezzele, Marco and Mola, Andrea and Rozza, Gianluigi},
	Booktitle = {The 28th International Ocean and Polar Engineering Conference},
	Date-Added = {2018-08-27 11:54:02 +0200},
	Date-Modified = {2018-08-27 11:54:02 +0200},
	Title = {{An efficient shape parametrisation by free-form deformation enhanced by active subspace for hull hydrodynamic ship design problems in open source environment}},
	Year = {2018}}

repository: e-dub/PyGeM

repo_name: e-dub/PyGeM

gha_license_id: NOASSERTION


text:
@article{ReWa13WC,
 author = {K. Ren and Q. Wang},
 journal = {IEEE Wireless Communications},
 number = {3},
 pages = {128-135},
 title = {Opportunistic Spectrum Access: From Stochastic Channels to Non-stochastic Channels},
 volume = {20},
 year = {2013}
}


text:
@article{bridson2007curl,
    title={Curl-noise for procedural fluid flow},
    author={Bridson, Robert and Houriham, Jim and Nordenstam, Marcus},
    journal={ACM Transactions on Graphics (ToG)},
    volume={26},
    number={3},
    pages={46},
    year={2007},
    publisher={ACM}
}

@inproceedings{mcquinn2013glyphsea,
    title={GlyphSea: visualizing vector fields},
    author={McQuinn, Emmett and Chourasia, Amit and Schulze, J{\"u}rgen P and Minster, Jean-Bernard},
    booktitle={IS\&T/SPIE Dig. Imaging},
    year={2013},
    organization={Society for Optics and Photonics}
}

@article{gustavson2005simplex,
    title={Simplex noise demystified},
    author={Gustavson, Stefan},
    year={2005}
}

@article{ragnemalm2008polygons,
    title={Polygons feel no pain},
    author={Ragnemalm, Ingemar},
    year={2013}
}

repository: CaffeineViking/cnpf

repo_name: CaffeineViking/cnpf