text:
optics δ−kicked rotor (AOKR) system, a paradigm of classical and quantum chaos. The AOKR rotor is realized by subjecting a Bose-Einstein condensate (BEC) of 87Rb atoms to a periodic potential. The potential in the form of a standing wave, obtained from a far detuned laser beam is turned on and off periodically in time, producing short pulses (kicks) of laser light. For certain values of the period between the kicks, resonant effects known as quantum resonances are observed that are purely quantum effects. Quantum resonances have been examined in the AOKR for a series of kicks. For large number of kicks, the width of these resonances have been shown to become narrow. Higher order resonances corresponding to fractional Talbot times have been observed in the system. These quantum resonant effects have been found to depend sensitively on the initial velocity of the atoms. The first three primary resonances have been studied in detail, by measuring the momentum distribution and the kinetic energy of the atoms, for two and four kicks. A sinusoidal dependence of the energy on the initial momentum has been observed for two kicks. By increasing the number of kicks, the system becomes extremely sensitive to the initial momentum of the atoms. For four kicks, a more complex behavior is observed in the system energy. A scheme for investigating Loschmidt time reversal of chaotic dynamics of the atomic deBroglie waves have been described in the AOKR system. It has been demonstrated that the initial wave function of an ensemble of ultra- cold atoms is restored, after a series of delta-kicks in what is essentially a multiple beam interferometry experiment. During the process, the evolution of the system for a fraction of the atoms with a very small initial momentum is reversed, which results in a narrowing of the momentum distribution. It is hoped that the research presented in this thesis will significantly con- tribute to the understanding of the connection between the classical and quan- tum worlds.},
	Author = {Ulah, Arif},
	Date-Modified = {2016-10-25 08:10:37 +0000},
	School = {The University of Auckland},
	Title = {Delta-kicked rotor experiments with an all-optical BEC},
	Year = {2012},
	Bdsk-Url-1 = {https://researchspace.auckland.ac.nz/bitstream/handle/2292/12048/whole.pdf?sequence=2}}

@article{CT:Ullah_epjd_2012,
	Abstract = {We review the theoretical model and experimental realization of the atom optics delta-kicked rotor (AOKR), a paradigm of classical and quantum chaos. We have performed a number of experiments with an all-optical Bose-Einstein condensate (BEC) in a periodic standing wave potential in an AOKR system. We discuss results of the investigation of the phenomena of quantum resonances in the AOKR. An interesting feature of the momentum distribution of the atoms obtained as a result of short pulses of light, is the variance of the momentum distribution or the kinetic energy < p(2)>/2m in units of the recoil energy E-rec = (h) over barw(rec). The energy of the system is examined as a function of pulse period for a range of kicks that allow the observation of quantum resonances. In particular we study the behavior of these resonances for a large number of kicks. Higher order quantum resonant effects corresponding to the fractional Talbot time of (1/4)T-T and (1/5)T-T for five and ten kicks have been observed. Moreover, we describe the effect of the initial momentum of the atoms on quantum resonances in the AOKR.},
	Author = {Ullah, A. and Ruddell, S. K. and Currivan, J. A. and Hoogerland, M. D.},
	Date-Modified = {2016-10-25 08:02:55 +0000},
	Journal = {European Physical Journal D},
	Keywords = {atom-optics decoherence systems chaos light wave},
	Number = {12},
	Title = {Quantum resonant effects in the delta-kicked rotor revisited},
	Volume = {66},
	Year = {2012},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000314303900005}}

@article{CT:White_pra_2013,
	Abstract = {We show that a moving obstacle, in the form of an elongated paddle, can create vortices that are dispersed or induce clusters of like-signed vortices in two-dimensional (2D) Bose-Einstein condensates. We propose statistical measures of clustering based on Ripley's K function which are suitable to the small size and small number of vortices in atomic condensates, which lack the huge number of length scales excited in larger classical and quantum turbulent fluid systems. The evolution and decay of clustering is analyzed using these measures. Experimentally it should prove possible to create such an obstacle by a laser beam and a moving optical mask. The theoretical techniques we present are accessible to experimentalists and extend the current methods available to induce 2D quantum turbulence in Bose-Einstein condensates.},
	Author = {White, Angela C. and Barenghi, Carlo F. and Proukakis, Nick P.},
	Date-Modified = {2016-10-25 08:27:06 +0000},
	Journal = {Physical Review A},
	Number = {1},
	Title = {Creation and characterization of vortex clusters in atomic Bose-Einstein condensates},
	Volume = {86},
	Year = {2012},
	Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevA.86.013635%20files/170/e013635.html%20http://pra.aps.org/abstract/PRA/v86/i1/e013635}}

@article{SS:Yankowitz_natphys_2012,
	Abstract = {The Schrodinger equation dictates that the propagation of nearly free electrons through a weak periodic potential results in the opening of bandgaps near points of the reciprocal lattice known as Brillouin zone boundaries(1). However, in the case of massless Dirac fermions, it has been predicted that the chirality of the charge carriers prevents the opening of a bandgap and instead new Dirac points appear in the electronic structure of the material(2,3). Graphene on hexagonal boron nitride exhibits a rotation-dependent moire pattern(4,5). Here, we show experimentally and theoretically that this moire pattern acts as a weak periodic potential and thereby leads to the emergence of a new set of Dirac points at an energy determined by its wavelength. The new massless Dirac fermions generated at these superlattice Dirac points are characterized by a significantly reduced Fermi velocity. Furthermore, the local density of states near these Dirac cones exhibits hexagonal modulation due to the influence of the periodic potential.},
	Author = {Yankowitz, M. and Xue, J. M. and Cormode, D. and Sanchez-Yamagishi, J. D. and Watanabe, K. and Taniguchi, T. and Jarillo-Herrero, P. and Jacquod, P. and LeRoy, B. J.},
	Date-Modified = {2016-10-25 08:02:58 +0000},
	Journal = {Nature Physics},
	Keywords = {scanning-tunneling-microscopy electrons},
	Number = {5},
	Pages = {382-386},
	Title = {Emergence of superlattice Dirac points in graphene on hexagonal boron nitride},
	Volume = {8},
	Year = {2012},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000303599200014}}

@article{PHD:leshouches_2013,
	Title = {Les Houches Pre-Doc School Archive 2012-2013},
	Year = {2013}}

@article{CT:Allen_arxiv_2013,
	Abstract = {Weakly interacting, dilute atomic Bose-Einstein condensates (BECs) have proved to be an attractive context for the study of nonlinear dynamics and quantum effects at the macroscopic scale. Recently, atomic BECs have been used to investigate quantum turbulence both experimentally and theoretically, stimulated largely by the high degree of control which is available within these quantum gases. In this article we motivate the use of atomic BECs for the study of turbulence, discuss the characteristic regimes of turbulence which are accessible, and briefly review some selected investigations of quantum turbulence and recent results. We focus on three stages of turbulence - the generation of turbulence, its steady state and its decay - and highlight some fundamental questions regarding our understanding in each of these regimes.},
	Author = {Allen, A. J. and Parker, N. G. and Proukakis, N. P. and Barenghi, C. F.},
	Date-Modified = {2016-10-25 08:08:59 +0000},
	Journal = {arXiv:1302.7176},
	Keywords = {Condensed Matter - Quantum Gases},
	Title = {Quantum turbulence in atomic Bose-Einstein condensates},
	Year = {2013},
	Bdsk-Url-1 = {http://arxiv.org/abs/1302.7176%20files/323/1302.html}}

@article{BEC:Antoine_CPC_2013,
	Abstract = {In this paper, we begin with the nonlinear Schrodinger/Gross-Pitaevskii equation (NLSE/GPE) for modeling Bose-Einstein condensation (BEC) and nonlinear optics as well as other applications, and discuss their dynamical properties ranging from time reversible, time transverse invariant, mass and energy conservation, and dispersion relation to soliton solutions. Then, we review and compare different numerical methods for solving the NLSE/GPE including finite difference time domain methods and time-splitting spectral method, and discuss different absorbing boundary conditions. In addition, these numerical methods are extended to the NLSE/GPE with damping terms and/or an angular momentum rotation term as well as coupled NLSEs/GPEs. Finally, applications to simulate a quantized vortex lattice dynamics in a rotating BEC are reported. (C) 2013 Elsevier B.V. All rights reserved.},
	Author = {Antoine, X. and Bao, W. Z. and Besse, C.},
	Date-Modified = {2016-10-25 08:02:11 +0000},
	Journal = {Computer Physics Communications},
	Keywords = {nonlinear schrodinger equation gross-pitaevskii equation time-splitting spectral method crank-nicolson finite difference method absorbing boundary condition bose-einstein condensation absorbing boundary-conditions bose-einstein condensation splitting spectral approximations generalized zakharov system finite-difference methods perfectly matched layer central vortex states semiclassical limit numerical-simulation efficient computation},
	Number = {12},
	Pages = {2621-2633},
	Title = {Computational methods for the dynamics of the nonlinear Schrodinger/Gross-Pitaevskii equations},
	Volume = {184},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000328725200001}}

@article{NUM:Bader_jcp_2013,
	Abstract = {The Schrodinger eigenvalue problem is solved with the imaginary time propagation technique. The separability of the Hamiltonian makes the problem suitable for the application of splitting methods. High order fractional time steps of order greater than two necessarily have negative steps and cannot be used for this class of diffusive problems. However, there exist methods which use fractional complex time steps with positive real parts which can be used with only a moderate increase in the computational cost. We analyze the performance of this class of schemes and propose new methods which outperform the existing ones in most cases. On the other hand, if the gradient of the potential is available, methods up to fourth order with real and positive coefficients exist. We also explore this case and propose new methods as well as sixth-order methods with complex coefficients. In particular, highly optimized sixth-order schemes for near integrable systems using positive real part complex coefficients with and without modified potentials are presented. A time-stepping variable order algorithm is proposed and numerical results show the enhanced efficiency of the new methods. (C) 2013 AIP Publishing LLC.},
	Author = {Bader, P. and Blanes, S. and Casas, F.},
	Date-Modified = {2016-10-25 08:02:12 +0000},
	Journal = {Journal of Chemical Physics},
	Keywords = {symplectic integrators equations schemes systems steps},
	Number = {12},
	Title = {Solving the Schrodinger eigenvalue problem by the imaginary time propagation technique using splitting methods with complex coefficients},
	Volume = {139},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000325392000051}}

@article{Num:Bao_siam_2013,
	Author = {Bao, W. and Marahrens, D. and Tang, Q. and Zhang, Y.},
	Date-Modified = {2016-10-25 08:27:30 +0000},
	Journal = {SIAM Journal on Scientific Computing},
	Pages = {A2671-A2695},
	Title = {A Simple and Efficient Numerical Method for Computing the Dynamics of Rotating Bose--Einstein Condensates via Rotating Lagrangian Coordinates},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1137/130911111%20http://epubs.siam.org/doi/pdf/10.1137/130911111}}

@article{BEC:Berrada_natcom_2013,
	Abstract = {Particle-wave duality enables the construction of interferometers for matter waves, which complement optical interferometers in precision measurement devices. This requires the development of atom-optics analogues to beam splitters, phase shifters and recombiners. Integrating these elements into a single device has been a long-standing goal. Here we demonstrate a full Mach--Zehnder sequence with trapped Bose--Einstein condensates confined on an atom chip. Particle interactions in our Bose--Einstein condensate matter waves lead to a nonlinearity, absent in photon optics. We exploit it to generate a non-classical state having reduced number fluctuations inside the interferometer. Making use of spatially separated wave packets, a controlled phase shift is applied and read out by a non-adiabatic matter-wave recombiner. We demonstrate coherence times a factor of three beyond what is expected for coherent states, highlighting the potential of entanglement as a resource for metrology. Our results pave the way for integrated quantum-enhanced matter-wave sensors.},
	Author = {Berrada, T. and van Frank, S. and B{\"u}cker, R. and Schumm, T. and Schaff, J. F. and Schmiedmayer, J.},
	Date-Modified = {2016-10-25 08:09:02 +0000},
	Journal = {Nature Communications},
	Keywords = {Atomic and molecular physics Physical sciences},
	Title = {Integrated Mach--Zehnder interferometer for Bose--Einstein condensates},
	Volume = {4},
	Year = {2013},
	Bdsk-Url-1 = {http://www.nature.com/ncomms/2013/130627/ncomms3077/full/ncomms3077.html%20files/362/ncomms3077.html}}

@techreport{Vtx:Cipriani_arxiv_2013,
	Abstract = {We study vortex lattices in three-component BECs under rotation, where three kinds of fractional vortices winding one of three components are present. Unlike the cases of two-component BECs where the phases of square and triangular lattices are present depending on the intercomponent coupling constant and the rotation speed, we find triangular ordered "colorful" vortex lattices where three kind of fractional vortices are placed in order without defects, in all parameter region where the inter-component coupling g' is less than the intra-component coupling g. When g > g' on the other hand, we find the phase separation; In a region where one component is present, the other two components must vanish, where we find ghost vortices in these two components whose positions are separated. In the boundary g = g', the accidental U(3) symmetry is present, in which case two vortices in different components are close to each other in some regions.},
	Author = {Cipriani, Mattia and Nitta, Muneto},
	Date-Modified = {2016-10-25 08:09:08 +0000},
	Keywords = {Condensed Matter - Quantum Gases High Energy Physics - Phenomenology High Energy Physics - Theory},
	Month = {2013/04/16/},
	Note = {Comment: 8 pages, 4 figures},
	Number = {1304.4375},
	Title = {Vortex lattices in three-component Bose-Einstein condensates under rotation: simulating colorful vortex lattices in a color superconductor},
	Type = {arXiv e-print},
	Year = {2013},
	Bdsk-Url-1 = {http://arxiv.org/abs/1304.4375%20files/374/1304.html}}

@article{AO:Endres_apb_2013,
	Abstract = {Correlation functions play an important role for the theoretical and experimental characterization of many-body systems. In solid-state systems, they are usually determined through scattering experiments, whereas in cold gases systems, time-of-flight, and in situ absorption imaging are the standard observation techniques. However, none of these methods allow the in situ detection of spatially resolved correlation functions at the single-particle level. Here, we give a more detailed account of recent advances in the detection of correlation functions using in situ fluorescence imaging of ultracold bosonic atoms in an optical lattice. This method yields single-site- and single-atom-resolved images of the lattice gas in a single experimental run, thus gaining direct access to fluctuations in the many-body system. As a consequence, the detection of correlation functions between an arbitrary set of lattice sites is possible. This enables not only the detection of two-site correlation functions but also the evaluation of non-local correlations, which originate from an extended region of the system and are used for the characterization of quantum phases that do not possess (quasi-)long-range order in the traditional sense.},
	Author = {Endres, M. and Cheneau, M. and Fukuhara, T. and Weitenberg, C. and Schauss, P. and Gross, C. and Mazza, L. and Banuls, M. C. and Pollet, L. and Bloch, I. and Kuhr, S.},
	Date-Modified = {2016-10-25 08:02:21 +0000},
	Journal = {Applied Physics B-Lasers and Optics},
	Keywords = {superfluid-insulator-transition bose-hubbard model optical lattice mott insulator fermi gas ultracold atoms quantum gases spin chains phases systems},
	Number = {1},
	Pages = {27-39},
	Title = {Single-site- and single-atom-resolved measurement of correlation functions},
	Volume = {113},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000326598200004}}

@article{c42f,
	Author = {Foster, Chris},
	Journal = {GitHub},
	Title = {vortutils: Utilities for finding vortices in complex fields},
	Url = {https://github.com/c42f/vortutils},
	Year = {2013},
	Bdsk-Url-1 = {https://github.com/c42f/vortutils}}

@article{VSL:Hamner_prl_2013,
	Abstract = {We investigate the phase winding dynamics of a harmonically trapped two-component BEC subject to inhomogeneous Rabi oscillations between two pseudospin components. While the single-particle dynamics can be explained by mapping the system to a two-component Bose-Hubbard model, nonlinearities due to the interatomic repulsion lead to new effects observed in the experiments: In the presence of a linear magnetic field gradient, a qualitatively stable moving magnetic order that is similar to antiferromagnetic order is observed after critical winding is achieved. We also demonstrate how the phase winding can be used to generate copious dark-bright solitons in a two-component BEC, opening the door for new experimental studies of these nonlinear features.},
	Author = {Hamner, C. and Zhang, Y. P. and Chang, J. J. and Zhang, C. W. and Engels, P.},
	Date-Modified = {2016-10-25 08:02:26 +0000},
	Journal = {Physical Review Letters},
	Keywords = {oscillations separation},
	Number = {26},
	Title = {Phase Winding a Two-Component Bose-Einstein Condensate in an Elongated Trap: Experimental Observation of Moving Magnetic Orders and Dark-Bright Solitons},
	Volume = {111},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000331934500008}}

@article{Kohler:13,
	Abstract = {We propose steady-state electron transport based on coherent transfer by adiabatic passage (CTAP) in a linearly arranged triple quantum dot with leads attached to the outer dots. Its main feature is repeated steering of single electrons from the first dot to the last dot without relevant occupation of the middle dot. The coupling to leads enables a steady-state current, whose shot noise is significantly suppressed provided that the CTAP protocol performs properly. This represents an indication for the direct transfer between spatially separated dots and, thus, may resolve the problem of finding experimental evidence for the nonoccupation of the middle dot.},
	Author = {Huneke, J. and Platero, G. and Kohler, S.},
	Date-Modified = {2016-10-25 08:02:37 +0000},
	Journal = {Physical Review Letters},
	Keywords = {population transfer quantum transport shot-noise driven conductors nanoscale},
	Number = {3},
	Title = {Steady-State Coherent Transfer by Adiabatic Passage},
	Volume = {110},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000313552000016}}

@article{BEC:Morgan_soliton_2013,
	Abstract = {We examine the stability and dynamics of a family of crossed dark solitons in a harmonically confined Bose-Einstein condensate in two dimensions. Working in a regime where the fundamental snake instability is suppressed, we show the existence of an instability which leads to an interesting collapse and revival of the initial state for the fundamental case of two crossed solitons. The instability originates from the singular point where the solitons cross, and we characterize it by examining the Bogoliubov spectrum. Finally, we extend the treatment to systems of higher symmetry.},
	Author = {Morgan, T. and Busch, T.},
	Date-Modified = {2016-10-25 08:02:45 +0000},
	Journal = {Physical Review A},
	Keywords = {dark solitons propagation},
	Number = {6},
	Title = {Stability and dynamics of cross solitons in harmonically confined Bose-Einstein condensates},
	Volume = {88},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000328569300005}}

@article{AO:Morgan_pra_2013,
	Abstract = {Adiabatic techniques offer some of the most promising tools for achieving high-fidelity control of the center-of-mass degree of freedom of single atoms. Because the main requirement of these techniques is to follow an eigenstate of the system, constraints on timing and field strength stability are usually low, especially for trapped systems. In this paper we present a detailed example of a technique to adiabatically transport a single atom between different waveguides on an atom chip. To ensure that all conditions are fulfilled, we carry out fully three-dimensional simulations of the system, using experimentally realistic parameters. We also detail our method for simulating the system in very reasonable time scales on a consumer desktop machine by leveraging the power of graphics-processing-unit computing.},
	Author = {Morgan, T. and O'Riordan, L. J. and Crowley, N. and O'Sullivan, B. and Busch, T.},
	Date-Modified = {2016-10-25 08:02:46 +0000},
	Journal = {Physical Review A},
	Number = {5},
	Title = {Coherent transport by adiabatic passage on atom chips},
	Volume = {88},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000327147600013}}

@article{AO:Morgan_ORiordan_pra_2013,
	Author = {Morgan, T. and O'Riordan, L. J. and Crowley, N. and O'Sullivan, B. and Busch, Th},
	Date-Modified = {2016-10-25 08:08:39 +0000},
	Journal = {Physical Review A},
	Number = {5},
	Pages = {053618},
	Title = {Coherent transport by adiabatic passage on atom chips},
	Volume = {88},
	Year = {2013},
	Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevA.88.053618}}

@article{VTX:Neely_prl_2013,
	Abstract = {Fluids subjected to suitable forcing will exhibit turbulence, with characteristics strongly affected by the fluid's physical properties and dimensionality. In this work, we explore two-dimensional (2D) quantum turbulence in an oblate Bose-Einstein condensate confined to an annular trapping potential. Experimentally, we find conditions for which small-scale stirring of the condensate generates disordered 2D vortex distributions that dissipatively evolve toward persistent currents, indicating energy transport from small to large length scales. Simulations of the experiment reveal spontaneous clustering of samecirculation vortices and an incompressible energy spectrum with k(-5/3) dependence for low wave numbers k. This work links experimentally observed vortex dynamics with signatures of 2D turbulence in a compressible superfluid.},
	Author = {Neely, T. W. and Bradley, A. S. and Samson, E. C. and Rooney, S. J. and Wright, E. M. and Law, K. J. H. and Carretero-Gonzalez, R. and Kevrekidis, P. G. and Davis, M. J. and Anderson, B. P.},
	Date-Modified = {2016-10-25 08:02:47 +0000},
	Journal = {Physical Review Letters},
	Keywords = {statistical-mechanics red spot model},
	Number = {23},
	Title = {Characteristics of Two-Dimensional Quantum Turbulence in a Compressible Superfluid},
	Volume = {111},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000328615000005}}

@article{NUM:gpue,
	Author = {O'Riordan, L. J. and Morgan, T.},
	Date-Modified = {2016-10-25 08:26:51 +0000},
	Title = {GPUE: Graphics processing unit Gross-Pitaevskii equation solver},
	Year = {2013},
	Bdsk-Url-1 = {http://bitbucket.org/loriordan/gpue}}

@book{BK:Proukakis_finitetemp_2013,
	Abstract = {A broad overview of the principal theoretical techniques applied to non-equilibrium and finite temperature quantum gases. Covering Bose-Einstein condensates, degenerate Fermi gases, and the more recently realised exciton-polariton condensates, it fills a gap by linking between different methods with origins in condensed matter physics, quantum field theory, quantum optics, atomic physics and statistical mechanics --},
	Address = {London Singapore ; Hackensack, NJ},
	Author = {Proukakis, Nick and Gardiner, S. A. and Davis, Matthew J. and Szymanska, Marzena},
	Date-Modified = {2016-10-25 08:37:08 +0000},
	Keywords = {Cold gases. Quantum theory.},
	Publisher = {Imperial College Press ; Distributed by World Scientific},
	Series = {Cold atoms},
	Title = {Quantum gases : finite temperatures and non-equilibrium dynamics},
	Year = {2013}}

@article{CT:Reeves_prl_2013,
	Author = {Reeves, Matthew T. and Billam, Thomas P. and Anderson, Brian P. and Bradley, Ashton S.},
	Journal = {Physical Review Letters},
	Number = {10},
	Title = {Inverse Energy Cascade in Forced Two-Dimensional Quantum Turbulence},
	Volume = {110},
	Year = {2013}}

@article{LEC:Walraven_lh_2013,
	Author = {Walraven, J.},
	Date-Modified = {2016-10-25 08:10:03 +0000},
	Journal = {Les Houches Cold-Atoms PreDoc School 2013: Manipulation of quantum degenerate gases},
	Title = {Elements of Quantum Gases Collisions and Statistics - Master course},
	Year = {2013},
	Bdsk-Url-1 = {http://www.phlam.univ-lille1.fr/leshouches/cours13/Walraven.pdf}}

@article{Misc:Weon_pre_2013,
	Abstract = {Colloidal droplets including micro- and nanoparticles generally leave a ringlike stain, called the ``coffee ring,'' after evaporation. We show that fingering emerges during evaporation inside the coffee ring, resulting from a bidispersed colloidal mixture of micro- and nanoparticles. Microscopic observations suggest that finger formation is driven by competition between the coffee-ring and Marangoni effects, especially when the inward Marangoni flow is overwhelmed by the outward coffee-ring flow. This finding could help to understand the variety of the final deposition patterns of colloidal droplets.},
	Author = {Weon, Byung Mook and Je, Jung Ho},
	Date-Modified = {2016-10-25 08:27:05 +0000},
	Journal = {Physical Review E},
	Number = {1},
	Title = {Fingering inside the coffee ring},
	Volume = {87},
	Year = {2013},
	Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevE.87.013003%20files/270/e013003.html%20http://pre.aps.org/abstract/PRE/v87/i1/e013003}}

@article{CT:White_arxiv_2013,
	Abstract = {After over a decade of experiments generating and studying the physics of quantized vortices in atomic gas Bose-Einstein condensates, research is beginning to focus on the roles of vortices in quantum turbulence, as well as other measures of quantum turbulence in atomic condensates. Such research directions have the potential to uncover new insights into quantum turbulence, vortices and superfluidity, and also explore the similarities and differences between quantum and classical turbulence in entirely new settings. Here we present a critical assessment of theoretical and experimental studies in this emerging field of quantum turbulence in atomic condensates.},
	Author = {White, Angela C. and Anderson, Brian P. and Bagnato, Vanderlei S.},
	Date-Modified = {2016-10-25 08:09:40 +0000},
	Journal = {arXiv:1304.5332},
	Keywords = {Condensed Matter - Quantum Gases Physics - Fluid Dynamics},
	Title = {Vortices and turbulence in trapped atomic condensates},
	Year = {2013},
	Bdsk-Url-1 = {http://arxiv.org/abs/1304.5332%20files/326/1304.html}}

@article{NUM:Wittek_cpc_2013,
	Abstract = {kThe Trotter-Suzuki approximation leads to an efficient algorithm for solving the time-dependent Schrodinger equation. Using existing highly optimized CPU and GPU kernels, we developed a distributed version of the algorithm that runs efficiently on a cluster. Our implementation also improves the singlenode performance, and is able to use multiple GPUs within a node. The scaling is close to linear using the CPU kernels, whereas the efficiency of the GPU kernels improves with larger matrices. We also introduce a hybrid kernel that simultaneously uses multicore CPUs and GPUs in a distributed system. This kernel is shown to be efficient when the matrix size would not fit in the GPU memory. Larger quantum systems scale especially well with a high number nodes. The code is available under an open-source license. (C) 2012 Elsevier B.V. All rights reserved.},
	Author = {Wittek, P. and Cucchietti, F. M.},
	Date-Modified = {2016-10-25 08:02:57 +0000},
	Journal = {Computer Physics Communications},
	Keywords = {gpu computing mpi hamiltonian quantum evolution trotter-suzuki algorithm hybrid kernel exponential operators decomposition physics},
	Number = {4},
	Pages = {1165-1171},
	Title = {A second-order distributed Trotter-Suzuki solver with a hybrid CPU-GPU kernel},
	Volume = {184},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000315974100010}}

@article{Vtx:Wright_pra_2013,
	Abstract = {We have measured the threshold for creating long-lived excitations when a toroidal Bose-Einstein condensate is stirred by a rotating (optical) barrier of variable height. When the barrier height is on the order of or greater than half of the chemical potential, the critical barrier velocity at which we observe a change in the circulation state is much less than the speed for sound to propagate around the ring. In this regime we primarily observe discrete jumps (phase slips) from the noncirculating initial state to a simple, well-defined, persistent current state. For lower barrier heights, the critical barrier velocity at which we observe a change in the circulation state is higher, and approaches the effective sound speed for vanishing barrier height. The response of the condensate in this small-barrier regime is more complex, with vortex cores appearing in the bulk of the condensate. We find that the variation of the excitation threshold with barrier height is in qualitative agreement with the predictions of an effective one-dimensional hydrodynamic model.},
	Author = {Wright, K. C. and Blakestad, R. B. and Lobb, C. J. and Phillips, W. D. and Campbell, G. K.},
	Date-Modified = {2016-10-25 08:02:58 +0000},
	Journal = {Physical Review A},
	Keywords = {bose-einstein condensate critical velocities liquid-helium sound-propagation rotating annulus flow gas transition gyroscope he-4},
	Number = {6},
	Title = {Threshold for creating excitations in a stirred superfluid ring},
	Volume = {88},
	Year = {2013},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000328676300009}}

@article{NUM:GPElab_1,
	Abstract = {This paper presents GPELab (Gross-Pitaevskii Equation Laboratory), an advanced easy-to-use and flexible Matlab toolbox for numerically simulating many complex physics situations related to Bose-Einstein condensation. The model equation that GPELab solves is the Gross-Pitaevskii equation. The aim of this first part is to present the physical problems and the robust and accurate numerical schemes that are implemented for computing stationary solutions, to show a few computational examples and to explain how the basic GPELab functions work. Problems that can be solved include: Id, 2d and 3d situations, general potentials, large classes of local and nonlocal nonlinearities, multi-components problems, and fast rotating gases. The toolbox is developed in such a way that other physics applications that require the numerical solution of general Schrodinger-type equations can be considered.
Program summary
Program title: GPELab
Catalogue identifier: AETU_v1_0
Program summary URL: http://cpc.cs.qub.ac.uk/summaries/AETU_v1_0.html
Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland
Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html
No. of lines in distributed program, including test data, etc.: 26 552
No. of bytes in distributed program, including test data, etc.: 611 289
Distribution format: tar.gz
Programming language: Matlab.
Computer: PC, Mac.
Operating system: Windows, Mac OS, Linux.
Has the code been vectorized or parallelized?: Yes
RAM: 4000 Megabytes
Classification: 2.7, 4.6, 7.7.
Nature of problem:
Computing stationary solutions for a class of systems (multi-components) of Gross-Pitaevskii equations in Id, 2d and 3d. This program is particularly well designed for the computation of ground states of Bose-Einstein condensates as well as dynamics.
Solution method:
We use the imaginary-time method with a Semi-Implicit Backward Euler scheme, a pseudo-spectral approximation and a Krylov subspace method.
Running time:
From a few minutes for simple problems to a week for more complex situations on a medium computer. (C) 2014 Elsevier B.V. All rights reserved.},
	Author = {Antoine, X. and Duboscq, R.},
	Date-Modified = {2016-10-25 08:02:11 +0000},
	Journal = {Computer Physics Communications},
	Keywords = {bose-einstein condensates nonlinear schrodinger equation gross-pitaevskii equation stationary states imaginary time conjugate normalized gradient flow numerical simulation computational methods bose-einstein condensate computing ground-states nonlinear schrodinger-equation nonsymmetric linear-systems efficient numerical-methods normalized gradient flow vortex formation dynamics traps atoms},
	Number = {11},
	Pages = {2969-2991},
	Title = {GPELab, a Matlab toolbox to solve Gross-Pitaevskii equations I: Computation of stationary solutions},
	Volume = {185},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000342244900020}}

@article{CM:Bruun_prb_2014,
	Abstract = {Recent advances in cold atom experimentation suggest that studies of quantum two-dimensional melting of dipolar molecules, with dipoles aligned perpendicular to ordering plane, may be on the horizon. An intriguing aspect of this problem is that two-dimensional classical aligned dipoles ( already studied in great detail in soft matter experiments on magnetic colloids) are known to melt via a two-stage process, with an intermediate hexatic phase separating the usual crystal and isotropic fluid phases. We estimate here the effect of quantum fluctuations on this hexatic phase, for both dipolar systems and charged Wigner crystals. Our approximate phase diagrams rely on a pair of Lindemann criteria, suitably adapted to deal with the effects of thermal fluctuations in two dimensions. As part of our analysis, we determine the phonon spectra of quantum particles on a triangular lattice interacting with repulsive 1/r(3) and 1/r potentials. A large softening of the transverse and longitudinal phonon frequencies, due to both lattice effects and quantum fluctuations, plays a significant role in our analysis. The hexatic phase is predicted to survive down to very low temperatures.},
	Author = {Bruun, G. M. and Nelson, D. R.},
	Date-Modified = {2016-10-25 08:02:15 +0000},
	Journal = {Physical Review B},
	Keywords = {2 dimensions phase-transition crystals superconductors lattice gas},
	Number = {9},
	Title = {Quantum hexatic order in two-dimensional dipolar and charged fluids},
	Volume = {89},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000333553600002}}

@article{VSL:Donadello_prl_2014,
	Abstract = {We observe solitonic vortices in an atomic Bose-Einstein condensate (BEC) after free expansion. Clear signatures of the nature of such defects are the twisted planar density depletion around the vortex line, observed in absorption images, and the double dislocation in the interference pattern obtained through homodyne techniques. Both methods allow us to determine the sign of the quantized circulation. Experimental observations agree with numerical simulations. These solitonic vortices are the decay product of phase defects of the BEC order parameter spontaneously created after a rapid quench across the BEC transition in a cigar-shaped harmonic trap and are shown to have a very long lifetime.},
	Author = {Donadello, S. and Serafini, S. and Tylutki, M. and Pitaevskii, L. P. and Dalfovo, F. and Lamporesi, G. and Ferrari, G.},
	Date-Modified = {2016-10-25 08:02:20 +0000},
	Journal = {Physical Review Letters},
	Keywords = {vortex superfluid dynamics traps gases},
	Number = {6},
	Title = {Observation of Solitonic Vortices in Bose-Einstein Condensates},
	Volume = {113},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000340034500006}}

@article{Guillamon_nat_2014,
	Abstract = {Long-range correlations in two-dimensional (2D) systems are significantly altered by disorder potentials. Theory has predicted the existence of disorder-induced phenomena, such as Anderson localization(1) or the emergence of a Bose glass(2). More recently, it has been shown that when disorder breaks 2D continuous symmetry, long-range correlations can be enhanced(3). Experimentally, developments in quantum gases have allowed the observation of the effects of competition between interaction and disorder(4,5). However, experiments exploring the effect of symmetry-breaking disorder are lacking. Here, we create a 2D vortex lattice at 0.1 K in a superconducting thin film with a well-defined 1D thickness modulation-the symmetry-breaking disorder-and track the field-induced modification using scanning tunnelling microscopy. We find that the 1D modulation becomes incommensurate with the vortex lattice and drives an order-disorder transition, behaving as a scale-invariant disorder potential. We show that the transition occurs in two steps and is mediated by the proliferation of topological defects. The resulting critical exponents determining the loss of positional and orientational order are far above theoretical expectations for scale-invariant disorder(6-8) and follow instead the critical behaviour describing dislocation unbinding melting(9,10). Our data show that randomness disorders a 2D crystal, with enhanced long-range correlations due to the presence of a 1D modulation.},
	Author = {Guillamon, I. and Cordoba, R. and Sese, J. and De Teresa, J. M. and Ibarra, M. R. and Vieira, S. and Suderow, H.},
	Date-Modified = {2016-10-25 08:02:24 +0000},
	Journal = {Nature Physics},
	Keywords = {2-dimensional systems colloidal crystals phase-transitions coulomb gas dimensions waves order localization absence solids},
	Number = {11},
	Pages = {851-856},
	Title = {Enhancement of long-range correlations in a 2D vortex lattice by an incommensurate 1D disorder potential},
	Volume = {10},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000344846700019}}

@article{Vtx:Guo_pnas_2014,
	Abstract = {Cryogenic flow visualization techniques have been proved in recent years to be a very powerful experimental method to study superfluid turbulence. Micron-sized solid particles and metastable helium molecules are specifically being used to investigate in detail the dynamics of quantum flows. These studies belong to a well-established, interdisciplinary line of inquiry that focuses on the deeper understanding of turbulence, one of the open problem of modern physics, relevant to many research fields, ranging from fluid mechanics to cosmology. Progress made to date is discussed, to highlight its relevance to a wider scientific community, and future directions are outlined. The latter include, e.g., detailed studies of normal-fluid turbulence, dissipative mechanisms, and unsteady/oscillatory flows.},
	Author = {Guo, Wei and La Mantia, Marco and Lathrop, Daniel P. and Van Sciver, Steven W.},
	Date-Modified = {2016-10-25 08:09:51 +0000},
	Journal = {Proceedings of the National Academy of Sciences},
	Title = {Visualization of two-fluid flows of superfluid helium-4},
	Year = {2014},
	Bdsk-Url-1 = {http://www.pnas.org/content/early/2014/03/19/1312546111.abstract%20http://www.pnas.org/content/111/Supplement_1/4653.full.pdf}}

@article{VSL:Jendrzejewski_prl_2014,
	Abstract = {We report the direct observation of resistive flow through a weak link in a weakly interacting atomic Bose-Einstein condensate. Two weak links separate our ring-shaped superfluid atomtronic circuit into two distinct regions, a source and a drain. Motion of these weak links allows for creation of controlled flow between the source and the drain. At a critical value of the weak link velocity, we observe a transition from superfluid flow to superfluid plus resistive flow. Working in the hydrodynamic limit, we observe a conductivity that is 4 orders of magnitude larger than previously reported conductivities for a Bose-Einstein condensate with a tunnel junction. Good agreement with zero-temperature Gross-Pitaevskii simulations and a phenomenological model based on phase slips indicate that the creation of excitations plays an important role in the resulting conductivity. Our measurements of resistive flow elucidate the microscopic origin of the dissipation and pave the way for more complex atomtronic devices.},
	Author = {Jendrzejewski, F. and Eckel, S. and Murray, N. and Lanier, C. and Edwards, M. and Lobb, C. J. and Campbell, G. K.},
	Date-Modified = {2016-10-25 08:02:39 +0000},
	Journal = {Physical Review Letters},
	Keywords = {tonks-girardeau gas superfluid circuit},
	Number = {4},
	Title = {Resistive Flow in a Weakly Interacting Bose-Einstein Condensate},
	Volume = {113},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000341261100011}}

@article{VTX:Kwon_pra_2014,
	Abstract = {We investigate thermal relaxation of superfluid turbulence in a highly oblate Bose-Einstein condensate. We generate turbulent flow in the condensate by sweeping the center region of the condensate with a repulsive optical potential. The turbulent condensate shows a spatially disordered distribution of quantized vortices, and the vortex number of the condensate exhibits nonexponential decay behavior which we attribute to the vortex pair annihilation. The vortex-antivortex collisions in the condensate are identified with crescent-shaped, coalesced vortex cores. We observe that the nonexponential decay of the vortex number is quantitatively well described by a rate equation consisting of one-body and two-body decay terms. In our measurement, we find that the local two-body decay rate is closely proportional to T-2/mu, where T is the temperature and mu is the chemical potential.},
	Author = {Kwon, W. J. and Moon, G. and Choi, J. Y. and Seo, S. W. and Shin, Y. I.},
	Date-Modified = {2016-10-25 08:02:41 +0000},
	Journal = {Physical Review A},
	Keywords = {2-dimensional systems helium model},
	Number = {6},
	Title = {Relaxation of superfluid turbulence in highly oblate Bose-Einstein condensates},
	Volume = {90},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000346859700005}}

@article{CM:Lechner_prl_2014,
	Abstract = {Two-dimensional crystals melt via an intermediate hexatic phase, which is characterized by an anomalous scaling of spatial and orientational correlation functions and the absence of an attraction between dislocations. We propose a protocol to study the effect of quantum fluctuations on the nature of this phase with a model system of strongly correlated ultracold polar molecules. Dislocations can be located in experiment from local energy differences which induce internal stark shifts in the molecules. We present a criterion to identify the hexatic phase from the statistics of the end points of topological defect strings and find a hexatic phase, which is dominated by quantum fluctuations, between the crystal and superfluid phases.},
	Author = {Lechner, W. and Buchler, H. P. and Zoller, P.},
	Date-Modified = {2016-10-25 08:02:42 +0000},
	Journal = {Physical Review Letters},
	Keywords = {2 dimensions colloidal crystals gas lattice simulation},
	Number = {25},
	Title = {Role of Quantum Fluctuations in the Hexatic Phase of Cold Polar Molecules},
	Volume = {112},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000338644200013}}

@article{Num:Ming_jcp_2014,
	Abstract = {In this paper, we propose an efficient and accurate numerical method for computing the dynamics of rotating two-component Bose--Einstein condensates (BECs) which is described by the coupled Gross--Pitaevskii equations (CGPEs) with an angular momentum rotation term and an external driving field. By introducing rotating Lagrangian coordinates, we eliminate the angular momentum rotation term from the CGPEs, which allows us to develop an efficient numerical method. Our method has spectral accuracy in all spatial dimensions and moreover it can be easily implemented in practice. To examine its performance, we compare our method with those reported in the literature. Numerical results show that to achieve the same accuracy, our method takes much shorter computing time. We also apply our method to study issues such as dynamics of vortex lattices and giant vortices in rotating two-component BECs. Furthermore, we generalize our method to solve the vector Gross--Pitaevskii equations (VGPEs) which is used to study rotating multi-component BECs.},
	Author = {Ming, Ju and Tang, Qinglin and Zhang, Yanzhi},
	Date-Modified = {2016-10-25 08:10:19 +0000},
	Journal = {Journal of Computational Physics},
	Keywords = {Rotating two-component BECs Coupled/vector Gross--Pitaevskii equations Angular momentum rotation Rotating Lagrangian coordinates Time-splitting},
	Number = {0},
	Pages = {538-554},
	Title = {An efficient spectral method for computing dynamics of rotating two-component Bose--Einstein condensates via coordinate transformation},
	Volume = {258},
	Year = {2014},
	Bdsk-Url-1 = {http://www.sciencedirect.com/science/article/pii/S0021999113007201%20http://ac.els-cdn.com/S0021999113007201/1-s2.0-S0021999113007201-main.pdf?_tid=9052bab8-58cb-11e3-9e4f-00000aacb35d&acdnat=1385711887_d39975debd8456bd5064f95878eb9a34}}

@misc{YT:BEC_gen,
	Author = {O'Riordan, Lee James},
	Date-Modified = {2016-10-26 02:30:55 +0000},
	Publisher = {Youtube},
	Title = {BEC vortex lattice generation},
	Url = {http://goo.gl/30Mj1q},
	Year = {2014},
	Bdsk-Url-1 = {goo.gl/30Mj1q}}

@article{BEC:Ray_nat_2014,
	Author = {Ray, M. W. and Ruokokoski, E. and Kandel, S. and Mottonen, M. and Hall, D. S.},
	Date-Modified = {2016-10-25 08:09:57 +0000},
	Journal = {Nature},
	Number = {7485},
	Pages = {657-660},
	Title = {Observation of Dirac monopoles in a synthetic magnetic field},
	Volume = {505},
	Year = {2014},
	Bdsk-Url-1 = {http://dx.doi.org/10.1038/nature12954%20http://www.nature.com/nature/journal/v505/n7485/pdf/nature12954.pdf}}

@article{VTX:Reeves_pra_2014,
	Abstract = {The emergence of coherent rotating structures is a phenomenon characteristic of both classical and quantum two-dimensional (2D) turbulence. In this work we show theoretically that the coherent vortex structures that emerge in decaying 2D quantum turbulence can approach quasiclassical rigid-body rotation, obeying the Feynman rule of constant average areal vortex density while remaining spatially disordered. By developing a rigorous link between the velocity probability distribution and the quantum kinetic energy spectrum over wave number k, we show that the coherent vortex structures are associated with a k(3) power law in the infrared region of the spectrum, and a well-defined spectral peak that is a physical manifestation of the largest structures. We discuss the possibility of realizing coherent structures in Bose-Einstein condensate experiments and present Gross-Pitaevskii simulations showing that this phenomenon, and its associated spectral signatures, can emerge dynamically from feasible initial vortex configurations.},
	Author = {Reeves, M. T. and Billam, T. P. and Anderson, B. P. and Bradley, A. S.},
	Date-Modified = {2016-10-25 08:02:49 +0000},
	Journal = {Physical Review A},
	Keywords = {negative temperature states bose-einstein condensate point vortices statistical-mechanics turbulence dynamics systems equation velocity gases},
	Number = {5},
	Title = {Signatures of coherent vortex structures in a disordered two-dimensional quantum fluid},
	Volume = {89},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000338036000016}}

@article{BEC:Seo_jkps_2014,
	Abstract = {We observe that a density-depleted vortex core evolves into concentric density ripples in a freely-expanding quasi-two-dimensional Bose-Einstein condensate. The atomic density of the expanding condensate rapidly reduces due to the fast expansion along the tightly confined axial direction; thus, the transverse expansion of the condensate is not significantly affected by atom-atom interactions. We find that the observed density profiles of the vortex cores are in good quantitative agreement with numerical simulations assuming no interactions. We analyze the defocused images of the vortex cores, where defocussing is caused by the free fall of the condensate during the expansion time. In the defocused images, the vortex core becomes magnified and appears to be filled after a certain expansion time that depends on the vortex charge number.},
	Author = {Seo, S. W. and Choi, J. Y. and Shin, Y. I.},
	Date-Modified = {2016-10-25 08:02:51 +0000},
	Journal = {Journal of the Korean Physical Society},
	Keywords = {quasi-2d bose-einstein condensate quantized vortex 2-dimensional systems vortex},
	Number = {1},
	Pages = {53-57},
	Title = {Free expansion of quasi-2D Bose-Einstein condensates with quantized vortices},
	Volume = {64},
	Year = {2014},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000329972400010}}

@article{VTX:White_jphys_2014,
	Abstract = {We stir vortices into a trapped quasi two-dimensional atomic Bose-Einstein condensate by moving three laser stirrers. We apply stirring protocols introduced by Boyland et al. (2000), that efficiently build in topological chaos in classical fluids and are classified as Pseudo-Anosov stirring protocols. These are compared to their inefficient mixing counterparts, finite-order stirring protocols. We investigate if inefficient stirring protocols result in a more clustered distribution of vortices. The efficiency with which vortices are 'mixed' or distributed in a condensate is important for investigating dynamics of continuously forced quantum turbulence and the existence of the inverse cascade in turbulent two-dimensional superfluids.},
	Author = {White, A. C. and Proukakis, N. P. and Barenghi, C. F.},
	Date-Modified = {2016-10-25 08:27:05 +0000},
	Journal = {Journal of Physics: Conference Series},
	Number = {1},
	Pages = {012021},
	Title = {Topological stirring of two-dimensional atomic Bose-Einstein condensates},
	Volume = {544},
	Year = {2014},
	Bdsk-Url-1 = {http://stacks.iop.org/1742-6596/544/i=1/a=012021}}

@article{NUM:GPElab_2,
	Abstract = {GPELab is a free Matlab toolbox for modeling and numerically solving large classes of systems of Gross-Pitaevskii equations that arise in the physics of Bose-Einstein condensates. The aim of this second paper, which follows (Antoine and Duboscq, 2014), is to first present the various pseudospectral schemes available in GPELab for computing the deterministic and stochastic nonlinear dynamics of Gross-Pitaevskii equations (Antoine, et al., 2013). Next, the corresponding GPELab functions are explained in detail. Finally, some numerical examples are provided to show how the code works for the complex dynamics of BEC problems.
Program summary
Program title: GPELab
Catalogue identifier: AETU_v2_0
Program summary URL: http://cpc.cs.qub.ac.uk/summaries/AETU_v2_0.html
Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland
Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html
No. of lines in distributed program, including test data, etc.: 27209
No. of bytes in distributed program, including test data, etc.: 283623
Distribution format: tar.gz
Programming language: Matlab.
Computer: PC, Mac.
Operating system: Windows, Mac OS, Linux.
Has the code been vectorized or parallelized?: Yes
RAM: 4000 Megabytes
Classification: 2.7, 4.6, 7.7.
Catalogue identifier of previous version: AETU_v1_0
Journal reference of previous version: Comput. Phys. Comm. 185(2014)2969
Does the new version supersede the previous version?: Yes
Nature of problem: Simulation of dynamical solutions for a class of systems (multi-components) of time-dependent Gross-Pitaevskii equations in Id, 2d and 3d. This program is particularly well designed for the simulation of the dynamics of Bose-Einstein condensates as well as the computation of ground states.
Solution method: We use spectral schemes in space and splitting/relaxation scheme in time.
Reasons for new version: To include dynamic simulations.
Summary of revisions: It is now possible to do dynamical simulations with the code.
Running time: From a few seconds for simple problems to a few minutes for more complex situations on a medium computer. (C) 2015 Elsevier B.V. All rights reserved.},
	Author = {Antoine, X. and Duboscq, R.},
	Date-Modified = {2016-10-25 08:02:11 +0000},
	Journal = {Computer Physics Communications},
	Keywords = {bose-einstein condensates nonlinear schrodinger equation gross-pitaevskii equation nonlinear dynamics stochastic dynamics computational schemes numerical simulation bose-einstein condensate ground-states numerical-methods vortex formation efficient computation lattices traps atoms},
	Pages = {95-117},
	Title = {GPELab, a Matlab toolbox to solve Gross-Pitaevskii equations II: Dynamics and stochastic simulations},
	Volume = {193},
	Year = {2015},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000356189700012}}

@article{AO:Bergmann_jcp_2015,
	Abstract = {The first presentation of the STIRAP (stimulated Raman adiabatic passage) technique with proper theoretical foundation and convincing experimental data appeared 25 years ago, in the May 1st, 1990 issue of The Journal of Chemical Physics. By now, the STIRAP concept has been successfully applied in many different fields of physics, chemistry, and beyond. In this article, we comment briefly on the initial motivation of the work, namely, the study of reaction dynamics of vibrationally excited small molecules, and how this initial idea led to the documented success. We proceed by providing a brief discussion of the physics of STIRAP and how the method was developed over the years, before discussing a few examples from the amazingly wide range of applications which STIRAP now enjoys, with the aim to stimulate further use of the concept. Finally, we mention some promising future directions. (C) 2015 Author(s).},
	Author = {Bergmann, K. and Vitanov, N. V. and Shore, B. W.},
	Date-Modified = {2016-10-25 08:02:12 +0000},
	Journal = {Journal of Chemical Physics},
	Keywords = {coherent population transfer differential cross-sections semiconductor quantum dots franck-condon factors delayed laser-pulses multilevel systems diatomic-molecules magnetic sublevels vibrational levels transition-probabilities},
	Number = {17},
	Title = {Perspective: Stimulated Raman adiabatic passage: The status after 25 years},
	Volume = {142},
	Year = {2015},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000354258200001}}

@article{BEC:Chomaz_natcom_2015,
	Abstract = {Phase transitions are ubiquitous in our three-dimensional world. By contrast, most conventional transitions do not occur in infinite uniform low-dimensional systems because of the increased role of thermal fluctuations. The crossover between these situations constitutes an important issue, dramatically illustrated by Bose-Einstein condensation: a gas strongly confined along one direction of space may condense along this direction without exhibiting true long-range order in the perpendicular plane. Here we explore transverse condensation for an atomic gas confined in a novel trapping geometry, with a flat in-plane bottom, and we relate it to the onset of an extended (yet of finite-range) in-plane coherence. By quench crossing the transition, we observe topological defects with a mean number satisfying the universal scaling law predicted by Kibble-Zurek mechanism. The approach described can be extended to investigate the topological phase transitions that take place in planar quantum fluids.},
	Author = {Chomaz, L. and Corman, L. and Bienaime, T. and Desbuquois, R. and Weitenberg, C. and Nascimbene, S. and Beugnon, J. and Dalibard, J.},
	Date-Modified = {2016-10-25 08:02:16 +0000},
	Journal = {Nature Communications},
	Keywords = {spontaneous symmetry-breaking long-range order einstein condensation defect formation 2-dimensional systems superfluid he-3 dynamics crystals interference vortices},
	Title = {Emergence of coherence via transverse condensation in a uniform quasi-two-dimensional Bose gas},
	Volume = {6},
	Year = {2015},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000348832700006}}

@article{VTX:Wilson_pra_2015,
	Abstract = {We present an application of dark-field imaging that enables in situ detection of two-dimensional vortex distributions in single-component Bose-Einstein condensates (BECs). By rotating a Rb-87 BEC in a magnetic trap, we generate a triangular lattice of vortex cores in the BEC, with core diameters on the order of 400 nm and cores separated by approximately 9 mu m. We have experimentally confirmed that the positions of the vortex cores near the BEC center can be determined without the need for ballistic expansion of the BEC. Our imaging method should allow for the determination of arbitrary distributions of vortices and other superfluid density defects in cases where expansion of the BEC is either impractical or would significantly alter the physical characteristics and appearance of vortices or defects. Our method is also a step toward real-time measurements of complex two-dimensional vortex dynamics within a single BEC.},
	Author = {Wilson, K. E. and Newman, Z. L. and Lowney, J. D. and Anderson, B. P.},
	Date-Modified = {2016-10-25 08:02:57 +0000},
	Journal = {Physical Review A},
	Keywords = {atoms gas},
	Number = {2},
	Title = {In situ imaging of vortices in Bose-Einstein condensates},
	Volume = {91},
	Year = {2015},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000351768100004}}

@misc{BEC:Gauthier_arxiv_2016,
	Author = {Gauthier, G.; Lenton, I.; McKay Parry, N.; Baker, M.; Davis, M. J.; Rubinsztein-Dunlop, H.; Neely, T. W.},
	Title = {Direct imaging of a digital-micromirror device for configurable microscopic optical potentials},
	Year = {2016}}

@article{VTX:Groszek_pra_2016,
	Abstract = {We study computationally dynamics of quantized vortices in two-dimensional superfluid Bose-Einstein condensates confined in highly oblate power-law traps. We have found that the formation of large-scale Onsager vortex clusters prevalent in steep-walled traps is suppressed in condensates confined by harmonic potentials. However, the shape of the trapping potential does not appear to adversely affect the evaporative heating efficiency of the vortex gas. Instead, the suppression of Onsager vortex formation in harmonic traps can be understood in terms of the energy of the vortex configurations. Furthermore, we find that the vortex-antivortex pair annihilation that underpins the vortex evaporative heating mechanism requires the interaction of at least three vortices. We conclude that experimental observation of Onsager vortices should be the most apparent in flat or inverted-bottom traps.},
	Author = {Groszek, A. J. and Simula, T. P. and Paganin, D. M. and Helmerson, K.},
	Date-Modified = {2016-10-25 08:02:24 +0000},
	Journal = {Physical Review A},
	Keywords = {superfluid-helium sound emission turbulence visualization dynamics system he-4},
	Number = {4},
	Title = {Onsager vortex formation in Bose-Einstein condensates in two-dimensional power-law traps},
	Volume = {93},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000373872400006}}

@article{ME:arxiv_defect,
	Author = {Lee James O'Riordan and Thomas Busch},
	Journal = {arXiV},
	Note = {Accepted for publication in Physical Review A},
	Number = {1608.07756},
	Title = {Topological defect dynamics of vortex lattices in Bose--Einstein condensates},
	Year = {2016}}

@article{VTX:Masuda_pra_2016,
	Abstract = {Fast creation of a single vortex in BEC of alkali-metal atoms at a prescribed position and time is still challenging, even though various methods to create single and multiple vortices have been proposed and demonstrated. Topological vortex formation is advantageous in this respect over other methods in that the position and time of vortex formation is highly controllable. This method requires inversion of the bias magnetic field along the axis of the condensate, which leads to unwanted atom loss due to nonadiabatic transitions when the bias field crosses zero. It is the purpose of this paper to propose a scheme that enables a fast creation of a vortex in much shorter time than needed for adiabatic control time by introducing the counterdiabatic field to avert the atom loss. We further introduce a gauge transformation so that the required magnetic field is generated by manipulating the current of the Ioffe bars, which makes our proposal experimentally feasible.},
	Author = {Masuda, S. and Gungordu, U. and Chen, X. and Ohmi, T. and Nakahara, M.},
	Date-Modified = {2016-10-25 08:02:44 +0000},
	Journal = {Physical Review A},
	Keywords = {monopoles field},
	Number = {1},
	Title = {Fast control of topological vortex formation in Bose-Einstein condensates by counterdiabatic driving},
	Volume = {93},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000369135700005}}

@article{AO:SAP_REVIEW_2016,
	Abstract = {Adiabatic techniques are known to allow for engineering quantum states with high fidelity. This requirement is currently of large interest, as applications in quantum information require the preparation and manipulation of quantum states with minimal errors. Here we review recent progress on developing techniques for the preparation of spatial states through adiabatic passage, particularly focusing on three state systems. These techniques can be applied to matter waves in external potentials, such as cold atoms or electrons, and to classical waves in waveguides, such as light or sound.},
	Author = {Menchon-Enrich, R. and Benseny, A. and Ahufinger, V. and Greentree, A. D. and Th, Busch and Mompart, J.},
	Date-Modified = {2016-10-25 08:26:32 +0000},
	Journal = {Reports on Progress in Physics},
	Number = {7},
	Pages = {074401},
	Title = {Spatial adiabatic passage: a review of recent progress},
	Volume = {79},
	Year = {2016},
	Bdsk-Url-1 = {http://stacks.iop.org/0034-4885/79/i=7/a=074401}}

@article{VTX:Mithun_pra_2016,
	Abstract = {We study the vortex lattice dynamics in the presence of a single impurity as well as random impurities or disorder. We show that in the presence of a single impurity, the vortex lattice gets distorted and the distortion depends on the position of the single impurity with respect to the positions of the vortices in the impurity-free Abrikosov vortex lattice and also on the strength of the impurity potential. We then show that a type of giant hole with hidden vortices inside it can be created in the vortex lattice by a cluster of impurities. In the presence of random impurity potential or disorder, the vortex lattice melts. We show that the vortex lattice also melts in the presence of the pseudorandom potential generated by the superposition of two optical lattices. The absence of long-range order in the melted vortex lattice is demonstrated from the structure factor profile and the histogram of the distances between each pair of vortices.},
	Author = {Mithun, T. and Porsezian, K. and Dey, B.},
	Date-Modified = {2016-10-25 08:02:45 +0000},
	Journal = {Physical Review A},
	Keywords = {anderson localization ii superconductors transverse force quantized vortex transition superfluid insulator gases},
	Number = {1},
	Title = {Disorder-induced vortex lattice melting in a Bose-Einstein condensate},
	Volume = {93},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000368474800007}}

@article{VTX:oriordan_pra_2016,
	Abstract = {Vortex lattices in rapidly rotating Bose-Einstein condensates lead to a periodic modulation of the superfluid density with a triangular symmetry. Here we show that this symmetry can be combined with an external perturbation in order to create superlattice structures with two or more periodicities. Considering a condensate that is kicked by an optical lattice potential, we find the appearance of transient moire lattice structures, which can be identified using the kinetic energy spectrum.},
	Author = {O'Riordan, L. J. and White, A. C. and Busch, T.},
	Date-Modified = {2016-10-25 08:02:47 +0000},
	Journal = {Physical Review A},
	Keywords = {kolmogorov turbulence optical lattice graphene fields gases atoms model},
	Number = {2},
	Title = {Moire superlattice structures in kicked Bose-Einstein condensates},
	Volume = {93},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000369367600008}}

@article{VTX:Rankonjac_pra_2016,
	Abstract = {We report observations of the formation and subsequent decay of a vortex lattice in a Bose-Einstein condensate confined in a hybrid optical-magnetic trap. Vortices are induced by rotating the anharmonic magnetic potential that provides confinement in the horizontal plane. We present simple numerical techniques based on image analysis to detect vortices and analyze their distributions. We use these methods to quantify the amount of order present in the vortex distribution as it transitions from a disordered array to the energetically favorable ordered lattice.},
	Author = {Rakonjac, A. and Marchant, A. L. and Billam, T. P. and Helm, J. L. and Yu, M. M. H. and Gardiner, S. A. and Cornish, S. L.},
	Date-Modified = {2016-10-25 08:02:49 +0000},
	Journal = {Physical Review A},
	Keywords = {vortices superfluid atoms time gas},
	Number = {1},
	Title = {Measuring the disorder of vortex lattices in a Bose-Einstein condensate},
	Volume = {93},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000367890100014}}

@inproceedings{AO:Taie_oist_2016,
	Address = {Okinawa Institute of Science and Technology Graduate University, Japan},
	Author = {S. Taie, Y. Takahashi},
	Booktitle = {Mini Symposium: Spatial Adiabatic Passage},
	Title = {Conference talk},
	Year = {2016}}

@article{VTX:Skaugen_pre_2016,
	Abstract = {We investigate numerically the statistics of quantized vortices in two-dimensional quantum turbulence using the Gross-Pitaevskii equation. We find that a universal -5/3 scaling law in the turbulent energy spectrum is intimately connected with the vortex statistics, such as number fluctuations and vortex velocity, which is also characterized by a similar scaling behavior. The -5/3 scaling law appearing in the power spectrum of vortex number fluctuations is consistent with the scenario of passive advection of isolated vortices by a turbulent superfluid velocity generated by like-signed vortex clusters. The velocity probability distribution of clustered vortices is also sensitive to spatial configurations, and exhibits a power-law tail distribution with a -5/3 exponent.},
	Author = {Skaugen, A. and Angheluta, L.},
	Date-Modified = {2016-10-25 08:02:53 +0000},
	Journal = {Physical Review E},
	Keywords = {superfluid turbulence statistics spectrum},
	Number = {3},
	Title = {Vortex clustering and universal scaling laws in two-dimensional quantum turbulence},
	Volume = {93},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000371744600001}}

@article{CM:Sun_scirep_2016,
	Abstract = {Melting is considered to be one of the most fundamental problems in physical science. Generally, dimensionality plays an important role in melting. In three-dimension, it's well known that a crystal melts directly into a liquid via a first-order transition. In two-dimension (2D), however, the melting process has been widely debated whether it is a first-order transition or a two-step transition with an intermediate hexatic phase. Experimentally 2D melting has been intensively studied in equilibrium systems such as molecular and colloidal crystals, but rarely been explored in non-equilibrium system such as granular materials. In this paper, we experimentally studied the 2D melting in a driven granular model system at single particle level using video recording and particle tracking techniques. Measurements of orientational/translational correlation functions show evidences that the melting is a two-step transition. A novel concept of orientational/translational susceptibilities enable us to clearly resolve the intermediate hexatic phase. Our results are in excellent agreement with the two-step melting scenario predicted by KTHNY theory, and demonstrate that the KTHNY melting scenario can be extended to non-equilibrium systems.},
	Author = {Sun, X. Y. and Li, Y. and Ma, Y. Q. and Zhang, Z. X.},
	Date-Modified = {2016-10-25 08:02:54 +0000},
	Journal = {Scientific Reports},
	Keywords = {bond-orientational order 2 dimensions transition lattice disks gas},
	Title = {Direct observation of melting in a two-dimensional driven granular system},
	Volume = {6},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000373587000001}}

@article{BEC:Wigley_scirep_2016,
	Abstract = {We apply an online optimization process based on machine learning to the production of Bose-Einstein condensates (BEC). BEC is typically created with an exponential evaporation ramp that is optimal for ergodic dynamics with two-body s-wave interactions and no other loss rates, but likely sub-optimal for real experiments. Through repeated machine-controlled scientific experimentation and observations our 'learner' discovers an optimal evaporation ramp for BEC production. In contrast to previous work, our learner uses a Gaussian process to develop a statistical model of the relationship between the parameters it controls and the quality of the BEC produced. We demonstrate that the Gaussian process machine learner is able to discover a ramp that produces high quality BECs in 10 times fewer iterations than a previously used online optimization technique. Furthermore, we show the internal model developed can be used to determine which parameters are essential in BEC creation and which are unimportant, providing insight into the optimization process of the system.},
	Author = {Wigley, P. B. and Everitt, P. J. and van den Hengel, A. and Bastian, J. W. and Sooriyabandara, M. A. and McDonald, G. D. and Hardman, K. S. and Quinlivan, C. D. and Manju, P. and Kuhn, C. C. N. and Petersen, I. R. and Luiten, A. N. and Hope, J. J. and Robins, N. P. and Hush, M. R.},
	Date-Modified = {2016-10-25 08:02:56 +0000},
	Journal = {Scientific Reports},
	Keywords = {gaussian process regression genetic algorithm coherent control gases landscapes dynamics physics},
	Title = {Fast machine-learning online optimization of ultra-cold-atom experiments},
	Volume = {6},
	Year = {2016},
	Bdsk-Url-1 = {%3CGo%20to%20ISI%3E://WOS:000375919100002}}

@article{Wittek:2016,
	Author = {Wittek, Peter},
	Title = {Comparing three numerical solvers of the Gross-Pitaevskii equation},
	Url = {http://peterwittek.com/gpe-comparison.html},
	Year = {2016},
	Bdsk-Url-1 = {http://peterwittek.com/gpe-comparison.html}}

license: MIT

license_type: permissive

branch_name: refs/heads/master

extension: bib


text:
SECTION = "libs"
DESCRIPTION = "Client-side C library implementing the SSH2 protocol. See web site, we're moving off sourceforge."
DEPENDS = "openssl"
LICENSE = "LGPL"

DEFAULT_PREFERENCE="-1"

SRC_URI = "${SOURCEFORGE_MIRROR}/libssh2/libssh2-${PV}.tar.gz"

# just for sh4?
export ac_cv_func_malloc_0_nonnull=yes
export ac_cv_func_realloc_0_nonnull=yes

inherit autotools

EXTRA_OECONF = "--with-libssl-prefix=${STAGING_DIR}"

do_stage () {
	set -x
	install -d ${STAGING_INCDIR}/libssh
	for i in libssh2.h libssh2_publickey.h libssh2_sftp.h ; do
		install -m 0644 ${S}/include/$i ${STAGING_INCDIR}/
	done
	oe_libinstall -a -so -C src/.libs libssh2 ${STAGING_LIBDIR}
}

repository: metalsky/SamyGO

repo_name: metalsky/SamyGO

extension: bb


text:
@article{regner2009artist,
 abstract = {This paper surveys and categorizes emerging digital media business models. We apply the customer activity cycle of Vandermerwe (2000) to the consumption of digital media, taking three phases into account: pre-consumption, consumption and post-consumption. Our analysis of the business models focuses on their social costs and benefits. We derive the parameters as follows: convenience of use, exposure, ease of compliance and administration. We distinguish two polar environments for digital media: the Dark Web with content created by the masses, and the Light Web with content created by big media. We develop an artist life cycle model in which different business models appear to be optimal at different stages of an artist’s career. Voluntary payment-based models seem to be ideal for newcomers in the Dark Web, while digital rights management-based and complementary product and service-based models are the likely choice of established artists in the Light Web. Established artists might change their approach again, using voluntary payment-based or complementary product and service-based models when they retire.},
 author = {Regner, Tobias and Barria, Javier A and Pitt, Jeremy V and Neville, Brendan},
 doi = {10.1016/j.elerap.2009.05.002},
 journal = {Electronic Commerce Research and Applications},
 number = {6},
 pages = {334--342},
 publisher = {Elsevier},
 title = {An artist life cycle model for digital media content: Strategies for the Light Web and the Dark Web},
 volume = {8},
 year = {2009}
}

repository: TobReg/academic-kickstart

repo_name: TobReg/academic-kickstart


text:
# - Find Thrift (a cross platform RPC lib/tool)
# This module defines
#  THRIFT_VERSION_STRING, version string of ant if found
#  THRIFT_LIBRARIES, libraries to link
#  THRIFT_INCLUDE, where to find THRIFT headers
#  THRIFT_COMPILER, thrift compiler executable
#  THRIFT_FOUND, If false, do not try to use ant
# Function
#  thrift_gen_cpp(<path to thrift file> <source destination> <include destination> <source list>)

# prefer the thrift version supplied in THRIFT_HOME (cmake -DTHRIFT_HOME then environment)
find_path(THRIFT_INCLUDE
    NAMES
        thrift/Thrift.h
    HINTS
        ${THRIFT_HOME}
        ENV THRIFT_HOME
        /usr/local
        /opt/local
    PATH_SUFFIXES
        include
)

# prefer the thrift version supplied in THRIFT_HOME
find_library(THRIFT_LIBRARIES
    NAMES
        thrift libthrift
    HINTS
        ${THRIFT_HOME}
        ENV THRIFT_HOME
        /usr/local
        /opt/local
    PATH_SUFFIXES
        lib lib64
)

find_program(THRIFT_COMPILER
    NAMES
        thrift
    HINTS
        ${THRIFT_HOME}
        ENV THRIFT_HOME
        /usr/local
        /opt/local
    PATH_SUFFIXES
        bin bin64
)

if (THRIFT_COMPILER)
    exec_program(${THRIFT_COMPILER}
        ARGS -version OUTPUT_VARIABLE __thrift_OUT RETURN_VALUE THRIFT_RETURN)
    string(REGEX MATCH "[0-9]+.[0-9]+.[0-9]+-[a-z]+$" THRIFT_VERSION_STRING ${__thrift_OUT})

    # define utility function to generate cpp files
    function(thrift_gen_cpp thrift_file dst_src dst_inc SRC_LIST)
        set(_res)
        set(_res_inc_path)
        if(EXISTS ${thrift_file})
            get_filename_component(_target_dir ${thrift_file} NAME_WE)
            message(STATUS "Generating thrift C++ files for ${_target_dir}")
            if(NOT EXISTS ${CMAKE_BINARY_DIR}/${_target_dir})
                file(MAKE_DIRECTORY ${CMAKE_BINARY_DIR}/${_target_dir})
            endif()
            execute_process(COMMAND ${THRIFT_COMPILER} -o "${CMAKE_BINARY_DIR}/${_target_dir}" --gen cpp ${thrift_file})
            file(GLOB_RECURSE __result_src "${CMAKE_BINARY_DIR}/${_target_dir}/*.cpp")
            file(GLOB_RECURSE __result_hdr "${CMAKE_BINARY_DIR}/${_target_dir}/*.h")
        else()
            message(SEND_ERROR "thrift_gen_cpp: File ${thrift_file} does not exist")
        endif()
        set(${THRIFT_CPP_FILES} "${__result_src}" PARENT_SCOPE)
        set(${THRIFT_H_FILES} "${__result_hdr}" PARENT_SCOPE)
        foreach(src_file ${__result_src})
            get_filename_component(filename ${src_file} NAME)
            if(filename MATCHES "(.*)\\.skeleton\\.(.*)")
                message(STATUS "Ignoring ${filename}")
            else()
                file(COPY ${src_file} DESTINATION ${dst_src})
                list(APPEND _sources "${dst_src}/${filename}")
            endif()
        endforeach(src_file)
        foreach(hdr_file ${__result_hdr})
            file(COPY ${hdr_file} DESTINATION ${dst_inc})
        endforeach(hdr_file)
        set(${SRC_LIST} "${_sources}" PARENT_SCOPE)
    endfunction()
endif()

include(FindPackageHandleStandardArgs)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(Thrift DEFAULT_MSG THRIFT_LIBRARIES THRIFT_INCLUDE THRIFT_COMPILER)

mark_as_advanced(THRIFT_LIBRARIES THRIFT_INCLUDE THRIFT_COMPILER THRIFT_VERSION_STRING)

repository: xsls/confluo

repo_name: xsls/confluo

extension: cmake


text:
@book{Wertz2001,
author            = "James R. Wertz",
publisher         = "Published Jointly by Microcosm Press and Kluwer Academic Publishers",
year              = 2001,
title             = "Mission Geometry: Orbit and Constellation Design and Management",
}

repository: rodyo/FEX-sphericaltrig

repo_name: rodyo/FEX-sphericaltrig


text:
@Online{whittle15_dragons,
	Title                    = {Path Traced Glass Dragons},
	Author                   = {Joss Whittle},
	Year                     = {2015},
}

@Online{sizeofinternet,
	Author                   = {{Internet Live Stats}},
	Year                     = {2020},
	url                      = {https://www.internetlivestats.com},
}

@Online{gwern,
	Title                    = {Internet Search Tips},
	Author                   = {Gwern Branwen},
	Year                     = {2020},
	url                      = {https://www.gwern.net/Search},
}

@Online{texnique,
	Title                    = {TeXnique},
	Author                   = {Akshay Ravikumar},
	Year                     = {2019},
	url                      = {https://texnique.xyz},
}

@Online{texstackexchange,
	Title                    = {TeX StackExchange},
	Author                   = {{Stack Overflow}},
	Year                     = {2008},
	url                      = {https://tex.stackexchange.com},
}

@Online{overleafdocs,
	Title                    = {Overleaf Documentation},
	Author                   = {{Overleaf}},
	Year                     = {2020},
	url                      = {https://www.overleaf.com/learn},
}

@Online{mendeley,
	Title                    = {Mendeley},
	Author                   = {{RELX Group}},
	Year                     = {2019},
	url                      = {https://www.mendeley.com},
}

@Online{arxiv,
	Title                    = {arXiv},
	Author                   = {{Cornell University}},
	Year                     = {1991},
	url                      = {https://arxiv.org},
}

@Online{paperswithcode,
	Title                    = {Papers With Code},
	Author                   = {{Atlas ML}},
	Year                     = {2020},
	url                      = {https://paperswithcode.com},
}

@Online{highlighter,
	Title                    = {Slides Code Highlighter},
	Author                   = {Roman Nurik},
	Year                     = {2017},
	url                      = {https://romannurik.github.io/SlidesCodeHighlighter},
}

@INPROCEEDINGS{kaj86,
    author    = {Kajiya, James T.},
    title     = {The Rendering Equation},
    booktitle = {Proceedings of the 13th Annual Conference on Computer Graphics and Interactive Techniques},
    year      = {1986},
    series    = {SIGGRAPH '86},
    pages     = {143--150},
    address   = {New York, NY, USA},
    publisher = {ACM},
    isbn      = {0-89791-196-2},
    numpages  = {8},
    acmid     = {15902}
}


text:
SUMMARY = "Widgets for configuration dialog"
LICENSE = "BSD-3-Clause & GPL-2.0-or-later & LGPL-2.0-only & LGPL-2.0-or-later & LGPL-2.1-only & LGPL-3.0-only & MIT"
LIC_FILES_CHKSUM = " \
    file://LICENSES/BSD-3-Clause.txt;md5=954f4d71a37096249f837652a7f586c0 \
    file://LICENSES/GPL-2.0-or-later.txt;md5=fed54355545ffd980b814dab4a3b312c \
    file://LICENSES/LGPL-2.0-only.txt;md5=6d2d9952d88b50a51a5c73dc431d06c7 \
    file://LICENSES/LGPL-2.0-or-later.txt;md5=6d2d9952d88b50a51a5c73dc431d06c7 \
    file://LICENSES/LGPL-2.1-only.txt;md5=fabba2a3bfeb22a6483d44e9ae824d3f \
    file://LICENSES/LGPL-3.0-only.txt;md5=c51d3eef3be114124d11349ca0d7e117 \
    file://LICENSES/MIT.txt;md5=38aa75cf4c4c87f018227d5ec9638d75 \
"

inherit kde-kf5

DEPENDS += " \
    gettext-native \
    kcoreaddons-native \
    kdesignerplugin-native \
    kauth-native kauth \
    kconfig-native kconfig \
    kdoctools-native kdoctools \
    kcodecs \
    kguiaddons \
    kwidgetsaddons \
"

PV = "${KF5_VERSION}"
SRC_URI[sha256sum] = "8579be2a4301071fb0485fccc733083b58330ac92d776be1b73e6f377a7dbf1f"

FILES:${PN} += "${OE_QMAKE_PATH_PLUGINS}/designer"

RDEPENDS:${PN} += "perl"


text:
@inproceedings{caprimap,
author      = "M. Berz",
title       = "Symplectic Tracking in Circular Accelerators with High Order
               Maps",
pages       = "288",
booktitle   = "Nonlinear Problems in Future Particle Accelerators",
publisher   = "World Scientific",
year        = "1991"}

@inbook{monthnf,
author      = "M. Berz",
title       = "High-Order Computation and Normal Form Analysis of
               Repetitive Systems, in: M. {M}onth ({E}d),
               Physics of Particle Accelerators",
volume      = "249",
pages       = "456",
doi			= "10.1063/1.41975",
publisher   = "American Institute of Physics",
address     = "New York",
year        = "1991"}

@article{rdaint,
author      = "M. Berz and K. Makino",
title       = "Verified Integration of {ODE}s and Flows using
               Differential Algebraic Methods on High-Order {T}aylor Models",
journal     = "Reliable Computing",
doi			= "10.1023/A:1024467732637",
volume      = "4",
number      = "4",
pages       = "361-369",
year        = "1998"}

@article{go00,
author      = "K. Makino and M. Berz",
title       = "Verified Global Optimization with {T}aylor Model Methods",
journal     = "International Journal of Computer Research",
volume      = "12,2",
pages       = "245--252",
year        = "2003"}

@article{FMMCPO2010,
title = "The Fast Multipole Method in the Differential Algebra Framework",
journal = " Nuclear Instruments and Methods A 645",
pages = {338-344},
year = "2011",
doi = "10.1016/j.nima.2011.01.053",
author = "H. Zhang and M. Berz"
}

@misc{pyTPSA,
  author = {H. Zhang},
  title = {{pyTPSA}: A {Python TPSA} lib},
  year = {2021},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/zhanghe9704/tpsa-python}
}

@misc{cppTPSA,
  author = {H. Zhang},
  title = {{cppTPSA}: A {C++ TPSA} lib},
  year = {2021},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/zhanghe9704/tpsa}
}

@book{AIEP108book,
author      = "M. Berz",
title       = "Modern Map Methods in Particle Beam Physics",
publisher   = "Academic Press",
address     = "San Diego",
year        = "1999",
ISBN        = "0-12-014750-5",
doi			= "10.1016/s1076-5670(08)x7018-1",
note        = "{A}lso available at http://bt.pa.msu.edu/pub"}

@techreport{chao2002lecture,
  title={Lecture notes on topics in accelerator physics},
  author={Chao, A. W.},
  year={2002},
  doi={10.2172/812598},
  institution={Stanford Linear Accelerator Center, Menlo Park, CA (US)}
}

@article{COSYCAP04,
author      = "K. Makino and M. Berz",
title       = "{COSY INFINITY} Version 9",
journal     = "Nuclear Instruments and Methods",
volume      = "558",
pages       = "346-350",
doi 		= "10.1016/j.nima.2005.11.109",
year        = "2006"}

@article{forest2002introduction,
  title={Introduction to the polymorphic tracking code},
  author={Forest, Etienne and Schmidt, Frank and McIntosh, Eric},
  journal={KEK report},
  volume={3},
  pages={2002},
  year={2002}
}

@techreport{deniau2017mad,
  title={The {MAD-X} Program, version 5.07.00, User’s Reference Manual},
  author={Deniau, Laurent and Grote, Hans and Roy, Ghislain and Schmidt, Frank},
  institution={{CERN}},
  year={2017}
}

@incollection{massari2018differential,
  title={Differential Algebra software library with automatic code generation for space embedded applications},
  author={Massari, M. and Di Lizia, Pierluigi and Cavenago, Francesco and Wittig, Alexander},
  booktitle={2018 AIAA Information Systems-AIAA Infotech@ Aerospace},
  pages={0398},
  doi={10.2514/6.2018-0398},
  year={2018}
}

@misc{DACE,
  author = {Massari, M. and Wittig, A.},
  title = {DACE: The Differential Algebra Computational Toolbox},
  year = {2021},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/dacelib/dace}
}


text:
SUMMARY = "Class based views for Flask"
DESCRIPTION = "Flask-Classy is an extension that adds class-based views to Flask."
HOMEPAGE = "https://github.com/apiguy/flask-classy"
LICENSE = "BSD"
LIC_FILES_CHKSUM = "file://flask_classy.py;beginline=7;endline=8;md5=9389255f78767cbab84dbe73c241db12"

SRC_URI[md5sum] = "12d01eca775061d214101e73cb2e1b2a"
SRC_URI[sha256sum] = "13c9b4312bff2bf5c6c45ba7d6da46d6bd81724dfc45b598f12438c230583aab"

PYPI_PACKAGE = "Flask-Classy"
inherit pypi setuptools3

repository: fullstackfpga/meta-petalinux

repo_name: fullstackfpga/meta-petalinux


text:
DESCRIPTION = "App application"
LICENSE = "MIT"
LIC_FILES_CHKSUM = "file://${COMMON_LICENSE_DIR}/MIT;md5=0835ade698e0bcf8506ecda2f7b4f302"
SRC_URI = "file://app.c"
S = "${WORKDIR}"
do_compile() {
set CFLAGS -g
${CC} ${CFLAGS} -lm app.c ${LDFLAGS} -o app
unset CFLAGS
}
do_install() {
install -d ${D}${bindir}
install -m 0755 app ${D}${bindir}
}

branch_name: refs/heads/main


text:
DESCRIPTION = "Virtual Machine for LucasArts Adventures for Qt/Embedded based palmtop environments w/ SDL."
SECTION = "opie/games"
PRIORITY = "optional"
DEPENDS = "libsdl-qpe libmad tremor libogg zlib mpeg2dec"
LICENSE = "GPL"

SRC_URI = "${SOURCEFORGE_MIRROR}/scummvm/scummvm-${PV}.tar.bz2 \
			file://sword1.patch;patch=1 \
			file://tremor.patch;patch=1 \
			file://mouse.patch;patch=1 "

inherit autotools

export SDL_CONFIG = "${STAGING_BINDIR_CROSS}/sdl-config"

EXTRA_OECONF = "--host=${HOST_SYS} \
		--backend=sdl \
		--disable-alsa \
		--with-ogg-prefix=${STAGING_LIBDIR}/.. \
		--with-vorbis-prefix=${STAGING_LIBDIR}/.. \
		--with-mpeg2-prefix=${STAGING_LIBDIR}/.. \
		--with-mad-prefix=${STAGING_BINDIR_CROSS}/.. "

do_configure() {
	./configure ${EXTRA_OECONF}
}

do_compile() {
	oe_runmake CC="${CC}" CXX="${CXX}" CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS} -lmpeg2" \
                   DEFINES="-DUNIX -DSCUMM_NEED_ALIGNMENT -DQTOPIA -DUSE_MAD -DUSE_VORBIS -DUSE_ZLIB -DUSE_MPEG2"
}

do_install() {
	install -d ${D}${bindir}
	install -m 0755 scummvm ${D}${bindir}/scummvm
}

repository: jdegges/gumstix-pip-oe

repo_name: jdegges/gumstix-pip-oe