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@STRING{springer = {Springer-Verlag}}

@STRING{sfp = {Scottish Functional Programming Workshop}}

@STRING{tfp = {Trends in Functional Programming}}

@inproceedings{Asada:2010:ASM:1863597.1863607,
 author = {Asada, Kazuyuki},
 title = {Arrows Are Strong Monads},
 booktitle = {Proceedings of the Third {ACM SIGPLAN} Workshop on Mathematically Structured Functional Programming},
 series = {MSFP'10},
 year = {2010},
 isbn = {978-1-4503-0255-5},
 location = {Baltimore, Maryland, USA},
 pages = {33--42},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/1863597.1863607},
 doi = {10.1145/1863597.1863607},
 acmid = {1863607},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {arrow, computational effect, freyd category, profunctor, strong monad},
}

@STRING{theacm = {ACM Press}}
@INPROCEEDINGS{5981811,
author={Lu Xia and Chia-Chih Chen and Aggarwal, J. K.},
booktitle={Computer Vision and Pattern Recognition Workshops},
title={Human detection using depth information by {Kinect}},
series = {CVPRW'11},
year={2011},
pages={15--22},
keywords={image segmentation;object detection;2D head contour model;3D head surface model;Kinect;Xbox 360;depth information;human detection method;human segmantation;Arrays;Feature extraction;Head;Humans;Image edge detection;Solid modeling;Three dimensional displays},
doi={10.1109/CVPRW.2011.5981811},
ISSN={2160-7508},
}

@ARTICLE{6190806,
author={Zhengyou Zhang},
journal={IEEE MultiMedia},
title={Microsoft {Kinect} Sensor and Its Effect},
year={2012},
volume={19},
number={2},
pages={4--10},
keywords={CMOS image sensors;computer vision;human computer interaction;infrared detectors;multimedia computing;optical projectors;3D depth cameras;CMOS image sensor;IR projector;Kinect sensor vision aspect;Microsoft Kinect sensor;advanced sensing hardware;computer vision;gaming industry;infrared projector;multimedia computing;Cameras;Games;Sensors;Three dimensional displays;Video recording;Microsoft Kinect;computer vision;human-computer interaction;motion capture;multimedia},
doi={10.1109/MMUL.2012.24},
ISSN={1070-986X},
}

@inproceedings{vonHardenberg:2001:BHI:971478.971513,
 author = {von Hardenberg, Christian and B{\'e}rard, Fran\c{c}ois},
 title = {Bare-hand human-computer interaction},
 booktitle = {Workshop on Perceptive User Interfaces},
 series = {PUI'01},
 year = {2001},
 location = {Orlando, Florida},
 pages = {1--8},
 numpages = {8},
 OPTurl = {http://doi.acm.org/10.1145/971478.971513},
 doi = {10.1145/971478.971513},
 acmid = {971513},
 publisher = {ACM},
 OPTaddress = {New York, NY, USA},
 keywords = {bare-hand control, computer vision, finger tracking, hand-posture recognition, human-computer interaction, real-time},
}

@article{Wang2003585,
title = "Recent developments in human motion analysis",
Xjournal = "Pattern Recognition",
journal = "Pattern Recogn.",
volume = "36",
number = "3",
pages = "585--601",
year = "2003",
note = "",
issn = "0031-3203",
doi = "10.1016/S0031-3203(02)00100-0",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S0031320302001000",
author = "Liang Wang and Weiming Hu and Tieniu Tan",
keywords = "Human motion analysis",
keywords = "Detection",
keywords = "Tracking",
keywords = "Behavior understanding",
keywords = "Semantic description "
}

@article{wang2012application,
  title={An application of classifier combination methods in hand gesture recognition},
  author={Wang, Guan-Wei and Zhang, Chunxia and Zhuang, Jian},
  Xjournal={Mathematical Problems in Engineering},
  journal={Math.\ Probl.\ Eng.},
  Xvolume={2012},
  OPTnote = {Article ID 346951},
  year={2012},
  doi = {doi:10.1155/2012/346951},
  publisher={Hindawi Publishing},
}

@article{Stergiopoulou20091141,
title = "Hand gesture recognition using a neural network shape fitting technique",
Xjournal = "Engineering Applications of Artificial Intelligence",
journal = "Eng.\ Appl.\ Artif.\ Intel.",
volume = "22",
number = "8",
pages = "1141--1158",
year = "2009",
note = "",
issn = "0952-1976",
doi = "10.1016/j.engappai.2009.03.008",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S0952197609000694",
author = "E. Stergiopoulou and N. Papamarkos",
keywords = "Human–machine interaction",
keywords = "Hand gesture",
keywords = "Skin color detection",
keywords = "YCbCr color space",
keywords = "Neural network "
}

@article{camshift,
  title={Computer vision face tracking for use in a perceptual user interface},
  author={Bradski, Gary R.},
  year={1998},
  journal={Intel Technology Journal},
  number={Q2},
  OPTpublisher={Intel}
}

@INPROCEEDINGS{nouar2006,
author={Nouar, O.-D. and Ali, G. and Raphael, C.},
booktitle={IEEE International Conference on Acoustics, Speech and Signal Processing},
title={Improved Object Tracking With Camshift Algorithm},
series = {ICASSP'06},
year={2006},
volume={2},
pages={II:657--660},
keywords={image processing;CamShift algorithm;colorimetric channels;continuously adaptive meanshift;object tracking;two-dimensional image distribution histogram;Histograms;Image analysis;Image color analysis;Image sequences;Irrigation;Iterative algorithms;Laboratories;Probability distribution;Signal analysis;Target tracking},
doi={10.1109/ICASSP.2006.1660428},
ISSN={1520-6149},
}

@incollection{978-0-387-34747-9_30,
year={2006},
isbn={978-0-387-34654-0},
booktitle={Artificial Intelligence in Theory and Practice},
Xvolume={217},
longseries={IFIP International Federation for Information Processing},
series = {IFIP 217},
Xeditor={Bramer, Max},
doi={10.1007/978-0-387-34747-9_30},
title={Fuzzy Rule-Based Hand Gesture Recognition},
publisher={Springer US},
author={Bedregal, Benjamín C. and Costa, Antônio C. R. and Dimuro, Graçaliz P.},
pages={285-294}
}

@INPROCEEDINGS{haar,
author={Viola, P. and Jones, M.},
Xbooktitle={Proc.\ IEEE Computer Society Conference on Computer Vision and Pattern Recognition},
title={Rapid object detection using a boosted cascade of simple features},
year={2001},
OPTvolume={1},
series = {CVPR'01},
pages={I:511--518},
keywords={feature extraction;image classification;image representation;learning (artificial intelligence);object detection;AdaBoost;background regions;boosted simple feature cascade;classifiers;face detection;image processing;image representation;integral image;machine learning;object specific focus-of-attention mechanism;rapid object detection;real-time applications;statistical guarantees;visual object detection;Detectors;Face detection;Filters;Focusing;Image representation;Machine learning;Object detection;Pixel;Robustness;Skin},
doi={10.1109/CVPR.2001.990517},
ISSN={1063-6919},
organization = {IEEE},
}

@incollection{haar2,
year={2003},
isbn={978-3-540-40861-1},
Xbooktitle={Pattern Recognition},
longvolume={2781},
longseries={Lecture Notes in Computer Science},
series = {LNCS 2781},
Xeditor={Michaelis, Bernd and Krell, Gerald},
doi={10.1007/978-3-540-45243-0_39},
title={Empirical Analysis of Detection Cascades of Boosted Classifiers for Rapid Object Detection},
doi={10.1007/978-3-540-45243-0_39},
longpublisher={Springer Berlin Heidelberg},
publisher={Springer},
author={Lienhart, Rainer and Kuranov, Alexander and Pisarevsky, Vadim},
pages={297-304}
}

@article{Hjelmas2001236,
title = "Face Detection: A Survey",
journal = "Computer Vision and Image Understanding",
Xjournal = "Comput.\ Vis.\ Image.\ Und.",
volume = "83",
number = "3",
pages = "236--274",
year = "2001",
OPTnote = "",
issn = "1077-3142",
doi = "10.1006/cviu.2001.0921",
url = "http://www.sciencedirect.com/science/article/pii/S107731420190921X",
unicodeauthor = "Erik Hjelmås and Boon Kee Low",
author = "Erik Hjelm\r{a}s and Boon Kee Low",
publisher = "Elsevier",
}

@article{hand-survey,
year={2012},
issn={0269-2821},
Xjournal={Artificial Intelligence Review},
journal={Artif.\ Intell.\ Rev.},
doi={10.1007/s10462-012-9356-9},
title={Vision based hand gesture recognition for human computer interaction: a survey},
doi={10.1007/s10462-012-9356-9},
publisher={Springer Netherlands},
keywords={Hand; Gesture recognition; Human computer interaction; Representations; Recognition; Natural interfaces},
author={Rautaray, Siddharth S. and Agrawal, Anupam},
pages={1--54},
language={English}
}

@article{cross-corelation,
year={2012},
issn={1420-0597},
journal={Computational Geosciences},
volume={16},
number={3},
doi={10.1007/s10596-012-9287-1},
title={Multiple-point geostatistical modeling based on the cross-correlation functions},
doi={10.1007/s10596-012-9287-1},
publisher={Springer Netherlands},
keywords={Multiple-point geostatistics; Cross-correlation; Training image; Conditional simulation; Adaptive recursive template splitting},
author={Tahmasebi, Pejman and Hezarkhani, Ardeshir and Sahimi, Muhammad},
pages={779--797},
language={English}
}

@inproceedings{vezhnevets2003survey,
  title={A survey on pixel-based skin color detection techniques},
  author={Vezhnevets, Vladimir and Sazonov, Vassili and Andreeva, Alla},
  series={ICCGV' 03},
  booktitle={GraphiCon},
  year={2003}
}

@article{tripathi2011face,
  title={Face Detection using Combined Skin Color Detector and Template Matching Method},
  author={Tripathi, Smita and Sharma, Varsha and Sharma, Sanjeev},
  Xjournal={International Journal of Computer Applications},
  journal={Int.\ J.\ Comput.\ Appl.},
  volume={26},
  number={7},
  pages={5--8},
  year={2011}
}

@ARTICLE{shape,
author={Belongie, S. and Malik, J. and Puzicha, J.},
Xjournal={IEEE Transactions on Pattern Analysis and Machine Intelligence},
journal={IEEE T.\ Pattern.\ Anal.},
title={Shape matching and object recognition using shape contexts},
year={2002},
volume={24},
number={4},
pages={509--522},
keywords={handwritten character recognition;image matching;image registration;object recognition;splines (mathematics);COIL data set;MPEG;aligning transform;deformable templates;handwritten digits;image matching;image registration;nearest-neighbor classification;object recognition;object similarity;regularized thin-plate splines;shape alignment;shape context;shape matching;shape point correspondence;silhouettes;trademarks;Object recognition;Shape},
doi={10.1109/34.993558},
ISSN={0162-8828},
}

@techreport{weko_81253_1,
   author	 = "Pulkit, Kathuria and Atsuo, Yoshitaka",
   title	 = "Hand Gesture Recognition by using Logical Heuristics",
   year 	 = "2012",
   institution	 = "Japan Advanced Institute of Science and Technology, School of Information Science",
   number	 = "25",
   OPTmonth	 = "mar"
}

@INPROCEEDINGS{799224,
author={Zarit, B. D. and Super, B. J. and Quek, F. K. H.},
booktitle={Recognition, Analysis, and Tracking of Faces and Gestures in Real-Time Systems},
title={Comparison of five color models in skin pixel classification},
year={1999},
pages={58--63},
keywords={Bayes methods;decision theory;face recognition;image classification;image colour analysis;image texture;skin;table lookup;video signal processing;Bayesian decision theory;color models;color-histogram;face tracking;lighting;lookup table;skin detection;skin pixel classification;spatial analysis;texture analysis;video;Bayesian methods;Cameras;Decision theory;Detectors;Face detection;Face recognition;Histograms;Image texture analysis;Skin;Table lookup},
doi={10.1109/RATFG.1999.799224},
}

@phdthesis{faizi2008robust,
  title={Robust face detection using template matching algorithm},
  author={Faizi, Amir},
  year={2008},
  school={University of Toronto},
  type = {MASc},
}

@inproceedings{adaboost2,
  abstract =	 {In an earlier paper, we introduced a new "boosting"
                  algorithm called AdaBoost which, theoretically, can
                  be used to significantly reduce the error of any
                  learning algorithm that consistently generates
                  classifiers whose performance is a little better
                  than random guessing. We also introduced the related
                  notion of a "pseudo-loss" which is a method for
                  forcing a learning algorithm of multi-label
                  conceptsto concentrate on the labels that are
                  hardest to discriminate. In this paper, we
                  describe...},
  author =	 {Freund, Yoav and Schapire, Robert E.},
  Xbooktitle =	 {International Conference on Machine Learning},
  booktitle =	 {Int.\ Conf.\ Machine Learning},
  citeulike-article-id ={842211},
  citeulike-linkout-0
                  ={http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.29.3868},
  keywords =	 {boosting},
  pages =	 {148--156},
  posted-at =	 {2007-02-05 06:55:57},
  priority =	 {2},
  title =	 {Experiments with a New Boosting Algorithm},
  OPTurl =
                  {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.29.3868},
  year =	 {1996}
}

@incollection{adaboost,
year={1995},
isbn={978-3-540-59119-1},
booktitle={Computational Learning Theory},
longvolume={904},
longseries={Lecture Notes in Computer Science},
series={LNCS 904},
unicodeeditor={Vitányi, Paul},
Xeditor={Vit\'{a}nyi, Paul},
doi={10.1007/3-540-59119-2_166},
title={A desicion-theoretic generalization of on-line learning and an application to boosting},
doi={10.1007/3-540-59119-2_166},
longpublisher={Springer Berlin Heidelberg},
publisher={Springer},
author={Freund, Yoav and Schapire, Robert E.},
pages={23-37}
}

@INPROCEEDINGS{freak,
author={Alahi, A. and Ortiz, R. and Vandergheynst, P.},
Xbooktitle={IEEE Conference on Computer Vision and Pattern Recognition},
title={{FREAK}: Fast Retina Keypoint},
year={2012},
pages={510--517},
series = {CVPR'12},
keywords={computational complexity;eye;image matching;smart phones;transforms;SIFT;SURF;association algorithm;binary robust invariant scalable keypoint;binary string;computation complexity;embedded application;embedded device;fast retina keypoint;human visual system;keypoint descriptor;keypoint matching;scale invariant feature transform;smart phone;speed-up robust feature;vision application;Detectors;Humans;Kernel;Noise;Retina;Robustness;Vectors},
doi={10.1109/CVPR.2012.6247715},
ISSN={1063-6919},
organization = {IEEE},
}

@INPROCEEDINGS{brisk,
author={Leutenegger, S. and Chli, M. and Siegwart, R.Y.},
booktitle={IEEE International Conference on Computer Vision},
XXbooktitle={IEEE Int.\ Conf.\ Computer Vision},
title={{BRISK}: Binary Robust invariant scalable keypoints},
year={2011},
pages={2548--2555},
series = {ICCV'11},
keywords={computer vision;feature extraction;image matching;transforms;BRISK method;SIFT algorithm;SURF algorithm;binary robust invariant scalable keypoints;bit-string descriptor;computer vision application;image transformation;keypoint description;keypoint detection;keypoint generation;keypoint matching;scale-space FAST-based detector;Boats;Brightness;Complexity theory;Detectors;Feature extraction;Kernel;Robustness},
doi={10.1109/ICCV.2011.6126542},
ISSN={1550-5499},
organization = {IEEE},
}

@incollection{surf,
year={2006},
isbn={978-3-540-33832-1},
Xbooktitle={Computer Vision -- ECCV 2006},
booktitle={ECCV'06},
longvolume={3951},
longseries={Lecture Notes in Computer Science},
series = {LNCS 3951},
Xeditor={Leonardis, Aleš and Bischof, Horst and Pinz, Axel},
doi={10.1007/11744023_32},
title={{SURF}: Speeded Up Robust Features},
doi={10.1007/11744023_32},
longpublisher={Springer Berlin Heidelberg},
publisher={Springer},
author={Bay, Herbert and Tuytelaars, Tinne and Gool, Luc},
pages={404--417}
}

@INPROCEEDINGS{sift,
author={Lowe, D.G.},
booktitle={Processings of IEEE International Conference on Computer Vision},
XXbooktitle={Proc.\ IEEE Int.\ Conf.\ Computer Vision},
title={Object recognition from local scale-invariant features},
year={1999},
volume={2},
series = {ICCV'99},
pages={1150--1157},
keywords={computational geometry;feature extraction;image matching;least squares approximations;object recognition;3D projection;blurred image gradients;candidate object matches;cluttered partially occluded images;computation time;inferior temporal cortex;local geometric deformations;local image features;local scale-invariant features;low residual least squares solution;multiple orientation planes;nearest neighbor indexing method;primate vision;robust object recognition;staged filtering approach;unknown model parameters;Computer science;Electrical capacitance tomography;Filters;Image recognition;Layout;Lighting;Neurons;Object recognition;Programmable logic arrays;Reactive power},
doi={10.1109/ICCV.1999.790410},
organization = {IEEE},
}

@article{tukey1977exploratory,
  title={Exploratory data analysis},
  author={Tukey, John W.},
  journal={Addison-Wesley},
  year={1977}
}

@MastersThesis{endler-thesis-,
  author = 	 {Matthias Endler},
  title = 	 {Human-Computer Interaction Using Robust Realtime Gesture Recognition},
  school = 	 {University Bayreuth},
  year = 	 {2013},
  OPTkey = 	 {},
  OPTtype = 	 {},
  OPTaddress = 	 {},
  OPTmonth = 	 {},
  OPTnote = 	 {},
  OPTannote = 	 {}
}

@Thesis{endler-thesis,
  author = 	 {\emph{Redacted for review}},
  title = 	 {Human-Computer Interaction Using Robust Realtime Gesture Recognition},
  school = 	 {\emph{Redacted for review}},
  year = 	 {2013},
  OPTkey = 	 {},
  OPTtype = 	 {},
  OPTaddress = 	 {},
  OPTmonth = 	 {},
  OPTnote = 	 {},
  OPTannote = 	 {}
}

@article{sign1,
year={2012},
issn={1054-6618},
longjournal={Pattern Recognition and Image Analysis},
journal={Pattern Recognit.\ Image Anal.},
volume={22},
number={4},
doi={10.1134/S1054661812040086},
title={Automatic recognition fingerspelling gestures in multiple languages for a communication interface for the disabled},
Xdoi={10.1134/S1054661812040086},
publisher={SP MAIK Nauka/Interperiodica},
keywords={sign language; fingerspelling recognition; assistive technologies},
author={Kindiroglu, A. Alp and Yalcin, H. and Aran, O. and Hr\'{u}z, M. and Campr, P. and Akarun, L. and Karpov, A.},
pages={527--536},
language={English}
}
@incollection{sign2,
year={2008},
isbn={978-3-540-78344-2},
booktitle={Multimodal User Interfaces},
Xseries={Signals and Commmunication Technologies},
editor={Tzovaras, Dimitrios},
doi={10.1007/978-3-540-78345-9_10},
title={Gestural Interfaces for Hearing-Impaired Communication},
Xurl={http://dx.doi.org/10.1007/978-3-540-78345-9_10},
longpublisher={Springer Berlin Heidelberg},
publisher=Springer,
author={Aran, Oya and Burger, Thomas and Akarun, Lale and Caplier, Alice},
pages={219--250},
language={English}
}

@InProceedings{Xia2011,
  author    = {Lu Xia and Chia-Chih Chen and Aggarwal, J. K.},
  title     = {Human detection using depth information by {Kinect}},
  booktitle = {Computer Vision and Pattern Recognition Workshops},
  year      = {2011},
  series    = {CVPRW'11},
  pages     = {15--22},
  doi       = {10.1109/CVPRW.2011.5981811},
  issn      = {2160-7508},
  keywords  = {image segmentation;object detection;2D head contour model;3D head surface model;Kinect;Xbox 360;depth information;human detection method;human segmantation;Arrays;Feature extraction;Head;Humans;Image edge detection;Solid modeling;Three dimensional displays},
}

@Article{Zhang2012,
  author   = {Zhengyou Zhang},
  title    = {Microsoft {Kinect} Sensor and Its Effect},
  year     = {2012},
  volume   = {19},
  number   = {2},
  pages    = {4--10},
  issn     = {1070-986X},
  doi      = {10.1109/MMUL.2012.24},
  journal  = {IEEE MultiMedia},
  keywords = {CMOS image sensors;computer vision;human computer interaction;infrared detectors;multimedia computing;optical projectors;3D depth cameras;CMOS image sensor;IR projector;Kinect sensor vision aspect;Microsoft Kinect sensor;advanced sensing hardware;computer vision;gaming industry;infrared projector;multimedia computing;Cameras;Games;Sensors;Three dimensional displays;Video recording;Microsoft Kinect;computer vision;human-computer interaction;motion capture;multimedia},
}

@InProceedings{Hardenberg2001,
  author     = {von Hardenberg, Christian and B{\'e}rard, Fran\c{c}ois},
  title      = {Bare-hand human-computer interaction},
  booktitle  = {Proc.\ Workshop on Perceptive User Interfaces},
  year       = {2001},
  series     = {PUI'01},
  publisher  = {ACM},
  location   = {Orlando, Florida},
  pages      = {1--8},
  doi        = {10.1145/971478.971513},
  acmid      = {971513},
  keywords   = {bare-hand control, computer vision, finger tracking, hand-posture recognition, human-computer interaction, real-time},
  numpages   = {8},
  optaddress = {New York, NY, USA},
  opturl     = {http://doi.acm.org/10.1145/971478.971513},
}

@Article{Wang2003,
  author   = {Liang Wang and Weiming Hu and Tieniu Tan},
  title    = {Recent developments in human motion analysis},
  year     = {2003},
  volume   = {36},
  number   = {3},
  pages    = {585--601},
  issn     = {0031-3203},
  doi      = {10.1016/S0031-3203(02)00100-0},
  journal  = {Pattern Recognition},
  keywords = {Human motion analysis, Detection, Tracking, Behavior understanding, Semantic description },
  opturl   = {http://www.sciencedirect.com/science/article/pii/S0031320302001000},
}

@Article{Wang2012,
  author    = {Wang, Guan-Wei and Zhang, Chunxia and Zhuang, Jian},
  title     = {An application of classifier combination methods in hand gesture recognition},
  year      = {2012},
  volume    = {2012},
  doi       = {doi:10.1155/2012/346951},
  journal   = {Mathematical Problems in Engineering},
  optnote   = {Article ID 346951},
  publisher = {Hindawi Publishing},
}

@Article{Stergiopoulou2009,
  author   = {E. Stergiopoulou and N. Papamarkos},
  title    = {Hand gesture recognition using a neural network shape fitting technique},
  year     = {2009},
  volume   = {22},
  number   = {8},
  pages    = {1141--1158},
  issn     = {0952-1976},
  doi      = {10.1016/j.engappai.2009.03.008},
  journal  = {Engineering Applications of Artificial Intelligence},
  keywords = {Human–machine interaction, Hand gesture, Skin color detection, YCbCr color space, Neural network },
  opturl   = {http://www.sciencedirect.com/science/article/pii/S0952197609000694},
}

@Article{Bradski1998,
  author       = {Bradski, Gary R.},
  title        = {Computer vision face tracking for use in a perceptual user interface},
  year         = {1998},
  number       = {Q2},
  journal      = {Intel Technology Journal},
  optpublisher = {Intel},
}

@InProceedings{Nouar2006,
  author    = {Nouar, O.-D. and Ali, G. and Raphael, C.},
  title     = {Improved Object Tracking With Camshift Algorithm},
  booktitle = {IEEE International Conference on Acoustics, Speech and Signal Processing},
  year      = {2006},
  volume    = {2},
  series    = {ICASSP'06},
  pages     = {II:657--660},
  doi       = {10.1109/ICASSP.2006.1660428},
  issn      = {1520-6149},
  keywords  = {image processing;CamShift algorithm;colorimetric channels;continuously adaptive meanshift;object tracking;two-dimensional image distribution histogram;Histograms;Image analysis;Image color analysis;Image sequences;Irrigation;Iterative algorithms;Laboratories;Probability distribution;Signal analysis;Target tracking},
}

@InCollection{Bedregal2006,
  author     = {Bedregal, Benjamín C. and Costa, Antônio C. R. and Dimuro, Graçaliz P.},
  title      = {Fuzzy Rule-Based Hand Gesture Recognition},
  booktitle  = {Artificial Intelligence in Theory and Practice},
  year       = {2006},
  editor     = {Bramer, Max},
  volume     = {217},
  series     = {IFIP},
  publisher  = {Springer US},
  isbn       = {978-0-387-34654-0},
  pages      = {285-294},
  doi        = {10.1007/978-0-387-34747-9_30},
  longseries = {IFIP International Federation for Information Processing},
}

@InProceedings{Viola2001,
  author       = {Viola, P. and Jones, M.},
  title        = {Rapid object detection using a boosted cascade of simple features},
  booktitle    = {Proc.\ IEEE Computer Society Conference on Computer Vision and Pattern Recognition},
  year         = {2001},
  series       = {CVPR'01},
  organization = {IEEE},
  pages        = {I:511--518},
  doi          = {10.1109/CVPR.2001.990517},
  issn         = {1063-6919},
  keywords     = {feature extraction;image classification;image representation;learning (artificial intelligence);object detection;AdaBoost;background regions;boosted simple feature cascade;classifiers;face detection;image processing;image representation;integral image;machine learning;object specific focus-of-attention mechanism;rapid object detection;real-time applications;statistical guarantees;visual object detection;Detectors;Face detection;Filters;Focusing;Image representation;Machine learning;Object detection;Pixel;Robustness;Skin},
  optvolume    = {1},
}

@InCollection{Lienhart2003,
  author        = {Lienhart, Rainer and Kuranov, Alexander and Pisarevsky, Vadim},
  title         = {Empirical Analysis of Detection Cascades of Boosted Classifiers for Rapid Object Detection},
  booktitle     = {Pattern Recognition},
  year          = {2003},
  editor        = {Michaelis, Bernd and Krell, Gerald},
  series        = {LNCS 2781},
  publisher     = {Springer},
  isbn          = {978-3-540-40861-1},
  pages         = {297-304},
  doi           = {10.1007/978-3-540-45243-0_39},
  longpublisher = {Springer Berlin Heidelberg},
  longseries    = {Lecture Notes in Computer Science},
  longvolume    = {2781},
  opturl        = {http://dx.doi.org/10.1007/978-3-540-45243-0_39},
}

@Article{Rautaray2012,
  author    = {Rautaray, Siddharth S. and Agrawal, Anupam},
  title     = {Vision based hand gesture recognition for human computer interaction: a survey},
  year      = {2012},
  language  = {English},
  pages     = {1--54},
  issn      = {0269-2821},
  doi       = {10.1007/s10462-012-9356-9},
  journal   = {Artificial Intelligence Review},
  keywords  = {Hand; Gesture recognition; Human computer interaction; Representations; Recognition; Natural interfaces},
  opturl    = {http://dx.doi.org/10.1007/s10462-012-9356-9},
  publisher = {Springer Netherlands},
}

@Article{Tahmasebi2012,
  author    = {Tahmasebi, Pejman and Hezarkhani, Ardeshir and Sahimi, Muhammad},
  title     = {Multiple-point geostatistical modeling based on the cross-correlation functions},
  year      = {2012},
  language  = {English},
  volume    = {16},
  number    = {3},
  pages     = {779--797},
  issn      = {1420-0597},
  doi       = {10.1007/s10596-012-9287-1},
  journal   = {Computational Geosciences},
  keywords  = {Multiple-point geostatistics; Cross-correlation; Training image; Conditional simulation; Adaptive recursive template splitting},
  opturl    = {http://dx.doi.org/10.1007/s10596-012-9287-1},
  publisher = {Springer Netherlands},
}

@InProceedings{Vezhnevets2003,
  author    = {Vezhnevets, Vladimir and Sazonov, Vassili and Andreeva, Alla},
  title     = {A survey on pixel-based skin color detection techniques},
  booktitle = {Proc.\ GraphiCon},
  year      = {2003},
  series    = {ICCGV' 03},
}

@Article{Tripathi2011,
  author  = {Tripathi, Smita and Sharma, Varsha and Sharma, Sanjeev},
  title   = {Face Detection using Combined Skin Color Detector and Template Matching Method},
  year    = {2011},
  volume  = {26},
  number  = {7},
  pages   = {5--8},
  journal = {International Journal of Computer Applications},
}

@Article{Belongie2002,
  author   = {Belongie, S. and Malik, J. and Puzicha, J.},
  title    = {Shape matching and object recognition using shape contexts},
  year     = {2002},
  volume   = {24},
  number   = {4},
  pages    = {509--522},
  issn     = {0162-8828},
  doi      = {10.1109/34.993558},
  journal  = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  keywords = {handwritten character recognition;image matching;image registration;object recognition;splines (mathematics);COIL data set;MPEG;aligning transform;deformable templates;handwritten digits;image matching;image registration;nearest-neighbor classification;object recognition;object similarity;regularized thin-plate splines;shape alignment;shape context;shape matching;shape point correspondence;silhouettes;trademarks;Object recognition;Shape},
}

@TechReport{Pulkit2012,
  author      = {Pulkit, Kathuria and Atsuo, Yoshitaka},
  title       = {Hand Gesture Recognition by using Logical Heuristics},
  institution = {Japan Advanced Institute of Science and Technology, School of Information Science},
  year        = {2012},
  number      = {25},
  optmonth    = {mar},
}

@InProceedings{Zarit1999,
  author    = {Zarit, B. D. and Super, B. J. and Quek, F. K. H.},
  title     = {Comparison of five color models in skin pixel classification},
  booktitle = {Proc.\ International Workshop on Recognition, Analysis, and Tracking of Faces and Gestures in Real-Time Systems},
  year      = {1999},
  pages     = {58--63},
  doi       = {10.1109/RATFG.1999.799224},
  keywords  = {Bayes methods;decision theory;face recognition;image classification;image colour analysis;image texture;skin;table lookup;video signal processing;Bayesian decision theory;color models;color-histogram;face tracking;lighting;lookup table;skin detection;skin pixel classification;spatial analysis;texture analysis;video;Bayesian methods;Cameras;Decision theory;Detectors;Face detection;Face recognition;Histograms;Image texture analysis;Skin;Table lookup},
}

@PhdThesis{Faizi2008,
  author = {Faizi, Amir},
  title  = {Robust face detection using template matching algorithm},
  year   = {2008},
  type   = {MASc},
  school = {University of Toronto},
}

@InProceedings{Freund1996,
  author               = {Freund, Yoav and Schapire, Robert E.},
  title                = {Experiments with a New Boosting Algorithm},
  booktitle            = {International Conference on Machine Learning},
  year                 = {1996},
  pages                = {148--156},
  abstract             = {In an earlier paper, we introduced a new "boosting"
                  algorithm called AdaBoost which, theoretically, can
                  be used to significantly reduce the error of any
                  learning algorithm that consistently generates
                  classifiers whose performance is a little better
                  than random guessing. We also introduced the related
                  notion of a "pseudo-loss" which is a method for
                  forcing a learning algorithm of multi-label
                  conceptsto concentrate on the labels that are
                  hardest to discriminate. In this paper, we
                  describe...},
  citeulike-article-id = {842211},
  citeulike-linkout-0  = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.29.3868},
  keywords             = {boosting},
  opturl               = {http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.29.3868},
  posted-at            = {2007-02-05 06:55:57},
}

@InCollection{Freund1995,
  author        = {Freund, Yoav and Schapire, Robert E.},
  title         = {A desicion-theoretic generalization of on-line learning and an application to boosting},
  booktitle     = {Computational Learning Theory},
  year          = {1995},
  editor        = {Vit\'{a}nyi, Paul},
  series        = {LNCS 904},
  publisher     = {Springer},
  isbn          = {978-3-540-59119-1},
  pages         = {23-37},
  doi           = {10.1007/3-540-59119-2_166},
  longpublisher = {Springer Berlin Heidelberg},
  longseries    = {Lecture Notes in Computer Science},
  longvolume    = {904},
  opturl        = {http://dx.doi.org/10.1007/3-540-59119-2_166},
  unicodeeditor = {Vitányi, Paul},
}

@InProceedings{Alahi2012-,
  author       = {Alahi, A. and Ortiz, R. and Vandergheynst, P.},
  title        = {{FREAK}: Fast Retina Keypoint},
  booktitle    = {IEEE Conference on Computer Vision and Pattern Recognition},
  year         = {2012},
  series       = {CVPR'12},
  organization = {IEEE},
  pages        = {510--517},
  doi          = {10.1109/CVPR.2012.6247715},
  issn         = {1063-6919},
  keywords     = {computational complexity;eye;image matching;smart phones;transforms;SIFT;SURF;association algorithm;binary robust invariant scalable keypoint;binary string;computation complexity;embedded application;embedded device;fast retina keypoint;human visual system;keypoint descriptor;keypoint matching;scale invariant feature transform;smart phone;speed-up robust feature;vision application;Detectors;Humans;Kernel;Noise;Retina;Robustness;Vectors},
}

@InProceedings{Leutenegger2011-,
  author       = {Leutenegger, S. and Chli, M. and Siegwart, R.Y.},
  title        = {{BRISK}: Binary Robust invariant scalable keypoints},
  booktitle    = {IEEE International Conference on Computer Vision},
  year         = {2011},
  series       = {ICCV'11},
  organization = {IEEE},
  pages        = {2548--2555},
  doi          = {10.1109/ICCV.2011.6126542},
  issn         = {1550-5499},
  keywords     = {computer vision;feature extraction;image matching;transforms;BRISK method;SIFT algorithm;SURF algorithm;binary robust invariant scalable keypoints;bit-string descriptor;computer vision application;image transformation;keypoint description;keypoint detection;keypoint generation;keypoint matching;scale-space FAST-based detector;Boats;Brightness;Complexity theory;Detectors;Feature extraction;Kernel;Robustness},
}

@InCollection{Heinly2012,
  author        = {Heinly, Jared and Dunn, Enrique and Frahm, Jan-Michael},
  title         = {Comparative Evaluation of Binary Features},
  booktitle     = {Computer Vision -- ECCV 2012},
  year          = {2012},
  editor        = {Fitzgibbon, Andrew and Lazebnik, Svetlana and Perona, Pietro and Sato, Yoichi and Schmid, Cordelia},
  series        = {LNCS 7573},
  publisher     = {Springer},
  isbn          = {978-3-642-33708-6},
  pages         = {759--773},
  doi           = {10.1007/978-3-642-33709-3_54},
  keywords      = {binary features; comparison; evaluation},
  longpublisher = {Springer Berlin Heidelberg},
  longseries    = {Lecture Notes in Computer Science},
  opturl        = {http://dx.doi.org/10.1007/978-3-642-33709-3_54},
}

@InCollection{Bay2006,
  author        = {Bay, Herbert and Tuytelaars, Tinne and Gool, Luc},
  title         = {{SURF}: Speeded Up Robust Features},
  booktitle     = {Computer Vision -- ECCV 2006},
  year          = {2006},
  editor        = {Leonardis, Aleš and Bischof, Horst and Pinz, Axel},
  series        = {LNCS 3951},
  publisher     = {Springer},
  isbn          = {978-3-540-33832-1},
  pages         = {404--417},
  doi           = {10.1007/11744023_32},
  longpublisher = {Springer Berlin Heidelberg},
  longseries    = {Lecture Notes in Computer Science},
  longvolume    = {3951},
  opturl        = {http://dx.doi.org/10.1007/11744023_32},
}

@InProceedings{Lowe1999,
  author      = {Lowe, D.G.},
  title       = {Object recognition from local scale-invariant features},
  booktitle   = {Proc.\ IEEE International Conference on Computer Vision},
  year        = {1999},
  volume      = {2},
  pages       = {1150--1157},
  doi         = {10.1109/ICCV.1999.790410},
  keywords    = {computational geometry;feature extraction;image matching;least squares approximations;object recognition;3D projection;blurred image gradients;candidate object matches;cluttered partially occluded images;computation time;inferior temporal cortex;local geometric deformations;local image features;local scale-invariant features;low residual least squares solution;multiple orientation planes;nearest neighbor indexing method;primate vision;robust object recognition;staged filtering approach;unknown model parameters;Computer science;Electrical capacitance tomography;Filters;Image recognition;Layout;Lighting;Neurons;Object recognition;Programmable logic arrays;Reactive power},
  orientation = {IEEE},
}
@INPROCEEDINGS{Grund11,
  author =	 {Grund, N. and Derzapf, E. and Guthe, M.},
  title =	 {Instant Level-of-Detail},
  booktitle = {Vision, Modeling, and Visualization},
  series =	 {VMV'11},
  year =	 {2011},
  pages =	 {293-299}
}

@ARTICLE{luebke-2001-survey,
  author =	 {Luebke, David P.},
  title =	 {A Developer's Survey of Polygonal Simplification
                  Algorithms},
  longjournal =	 {IEEE Computer Graphics and Applications},
  journal =	 {IEEE Comput.\ Graph.},
  volume =	 {21},
  issue =	 {3},
  year =	 {2001},
  issn =	 {0272-1716},
}

@ARTICLE{rossignac-1993-rendering-,
  author =	 {J. Rossignac and P. Borel},
  title =	 {Multi-resolution {3D} approximations for rendering},
  journal =	 {Geometric Modeling in Computer Graphics},
  pages =	 {455--465},
  year =	 {1993},
}

@incollection{rossignac-1993-rendering,
year={1993},
isbn={978-3-642-78116-2},
booktitle={Modeling in Computer Graphics},
series={IFIP},
Xeditor={Falcidieno, Bianca and Kunii, Tosiyasu L.},
doi={10.1007/978-3-642-78114-8_29},
title={Multi-resolution {3D} approximations for rendering complex scenes},
Xurl={http://dx.doi.org/10.1007/978-3-642-78114-8_29},
longpublisher={Springer Berlin Heidelberg},
publisher={Springer},
author={Rossignac, Jarek and Borrel, Paul},
pages={455--465},
language={English}
}

@INPROCEEDINGS{low-1997-simple-cluster,
  author =	 {Low, Kok-Lim and Tan, Tiow-Seng},
  title =	 {Model simplification using vertex-clustering},
  longbooktitle ={Proceedings of the 1997 Symposium on Interactive 3D
                  Graphics},
  booktitle =	 {Proc.\ Symp.\ Interactive 3D Graphics},
  year =	 {1997},
  pages =	 {75--81},
}

@INPROCEEDINGS{popovic-1997-progessive-,
  author =	 {Popovi\'{c}, Jovan and Hoppe, Hugues},
  title =	 {Progressive simplicial complexes},
  Xbooktitle =	 {Proceedings of the 24th Annual Conference on
                  Computer Graphics and Interactive Techniques},
  booktitle =	 {Proc.\ Conf.\
                  Computer Graphics and Interactive Techniques},
  series =	 {SIGGRAPH'97},
  year =	 {1997},
  pages =	 {217--224},
}

@inproceedings{popovic-1997-progessive,
 author = {Popovi\'{c}, Jovan and Hoppe, Hugues},
 title = {Progressive Simplicial Complexes},
 longbooktitle = {Proceedings of the 24th Annual Conference on Computer Graphics and Interactive Techniques},
 booktitle =	 {Proc.\ Conf.\ Computer Graphics and Interactive Techniques},
 series = {SIGGRAPH'97},
 year = {1997},
 isbn = {0-89791-896-7},
 pages = {217--224},
 numpages = {8},
 OPTurl = {http://dx.doi.org/10.1145/258734.258852},
 doi = {10.1145/258734.258852},
 acmid = {258852},
 longpublisher = {ACM Press/Addison-Wesley Publishing Co.},
 publisher = {ACM/Addison-Wesley},
 OPTaddress = {New York, NY, USA},
 keywords = {geometry compression, level-of-detail representations, model simplification, multiresolution, progressive transmission},
}

@inproceedings{Lindstrom2000,
 author = {Lindstrom, Peter},
 title = {Out-of-core simplification of large polygonal models},
 longbooktitle = {Proceedings of the 27th Annual Conference on Computer Graphics and Interactive Techniques},
 booktitle = {Proc.\ Conf.\ Computer Graphics and Interactive Techniques},
 series = {SIGGRAPH'00},
 year = {2000},
 pages = {259--262},
}

@inproceedings{Shaffer:2001:EAS:601671.601690,
 author = {Shaffer, Eric and Garland, Michael},
 title = {Efficient adaptive simplification of massive meshes},
 longbooktitle = {Proceedings of the Conference on Visualization'01},
 booktitle = {Proc.\ Conf.\ Visualization'01},
 year = {2001},
 pages = {127--134},
}

@INPROCEEDINGS{Schaefer2003,
    author = {Scott Schaefer and Joe Warren},
    title = {Adaptive Vertex Clustering Using Octrees},
    booktitle = {Proc.\ SIAM Conf.\ Geometric Design and Computing},
    year = {2003}
}

@inproceedings{Garland2002,
 author = {Garland, Michael and Shaffer, Eric},
 title = {A multiphase approach to efficient surface simplification},
 longbooktitle = {Proceedings of the Conference on Visualization'02},
 booktitle = {Proc.\ Conf.\ Visualization'02},
 year = {2002},
 pages = {117--124},
}

@inproceedings{DeCoro:2007:RMS:1230100.1230128,
  author =	 {DeCoro, Christopher and Tatarchuk, Natalya},
  title =	 {Real-time mesh simplification using the {GPU}},
  longbooktitle ={Proceedings of the 2007 Symposium on Interactive 3D
                  Graphics and Games},
  booktitle =	 {Proc. Symp. Interactive 3D Graphics and Games},
  year =	 {2007},
  pages =	 {161--166},
}

@INPROCEEDINGS{Hoppe2009,
  author = {Hu, Liang and Sander, Pedro V. and Hoppe, Hugues},
  title = {Parallel view-dependent refinement of progressive meshes},
  booktitle = {I3D'09: Proceedings of the 2009 Symposium on Interactive 3D Graphics
	and Games},
  year = {2009},
  pages = {169--176}
}

@INPROCEEDINGS{derzapf10ic-pm,
  author = {Derzapf, E. and Menzel, N. and Guthe, M.},
  title = {Parallel View-Dependent Refinement of Compact Progressive Meshes},
  booktitle = {Eurographics Symposium on Parallel Graphics and Visualization},
  year = {2010},
  pages = {53--62},
}
@INPROCEEDINGS{derzapf10ooc-pm,
  author = {Derzapf, E. and Menzel, N. and Guthe, M.},
  title = {Parallel View-Dependent Out-of-Core Progressive Meshes},
  booktitle = {Vision, Modeling, and Visualization},
  year = "{\noopsort{2010a}}2010",
  pages = {53--62},
}
%  organization = {Eurographics Association}

@TECHREPORT{derzapf11icooc,
  author = {Derzapf, E. and Guthe, M.},
  title = {Dependency Free Parallel Progressive Meshes},
  year = {2010},
  institution = {Philipps-University Marburg, FB12},
}

@INPROCEEDINGS{garland-1997-quadric-error,
  author =	 {Garland, Michael and Heckbert, Paul S.},
  title =	 {Surface simplification using quadric error metrics},
  longbooktitle =	 {Proceedings of the 24th Annual Conference on
                  Computer Graphics and Interactive Techniques},
  booktitle =	 {Proc. 24\xth Conf.
                  Computer Graphics and Interactive Techniques},
  series =	 {SIGGRAPH'97},
  year =	 {1997},
  pages =	 {209--216},
}

@inproceedings{Garland:1998:SSC:288216.288280,
 author = {Garland, Michael and Heckbert, Paul S.},
 title = {Simplifying surfaces with color and texture using quadric error metrics},
 longbooktitle = {Proceedings of the Conference on Visualization'98},
 booktitle = {Proc.\ Conf.\ Visualization},
 year = {1998},
 pages = {263--269},
}

@INPROCEEDINGS{Garland1997,
  author = {Michael Garland and Paul S. Heckbert},
  title = {Surface simplification using quadric error metrics},
  longbooktitle = {SIGGRAPH'97: Proceedings of the 24th Annual Conference on Computer
	Graphics and Interactive Techniques},
  series = {SIGGRAPH'97},
  booktitle = {Proc. 24\xth Conf. Computer
	Graphics and Interactive Techniques},
  year = {1997},
  pages = {209--216},
  OPTaddress = {New York, NY, USA},
  longpublisher = {ACM Press/Addison-Wesley Publishing Co.},
  publisher = {ACM/Addison-Wesley},
  doi = {10.1145/258734.258849}
}
%  note = {\Addr{//doi.acm.org/10.1145/258734.258849}},
 % isbn = {0-89791-896-7}

@ARTICLE{Montani1994a,
  author = {Claudio Montani and Riccardo Scateni and Roberto Scopigno},
  title = {A modified look-up table for implicit disambiguation of Marching
	Cubes},
  longjournal = {The Visual Computer},
  journal =	 {Visual Comput.},
  year = {1994},
  volume = {10},
  pages = {353--355},
  number = {6},
  Xmonth = dec,
  address = {New York, NY, USA},
  idxdatepub = {2000:02},
  idxdatesub = {1998:11},
  idxkey = {SCIVIZ},
  idxmedium = {Text},
  idxstatus = {Published},
  publisher = {Springer-Verlag Inc.}
}

@MISC{Chernyaev1995,
  author = {Evgeni V. Chernyaev},
  title = {Marching Cubes 33: Construction of Topologically Correct Isosurfaces},
  year = {1995},
  text = {E. V. Chernyaev. Marching Cubes 33: Construction of Topologically
	Correct Isosurfaces. Technical Report CERN CN 95-17, CERN, 1995.},

url = {http://cds.cern.ch/record/292771/files/cn-95-017.pdf},
	note = {(Retrieved 2013-05-22)}
}
%  note = {\webLink{citeseer.ist.psu.edu/chernyaev95marching.html}}
%http://cds.cern.ch/record/292771/files/cn-95-017.pdf

@article {JCC:JCC540140212,
  author =	 {Heiden, W. and Goetze, T. and Brickmann, J.},
  title =	 {Fast generation of molecular surfaces from {3D} data
                  fields with an enhanced ``marching cubes'' algorithm},
  longjournal =	 {Journal of Computational Chemistry},
  journal =	 {J.\ Comput.\ Chem.},
  volume =	 {14},
  number =	 {2},
  publisher =	 {John Wiley & Sons, Inc.},
  pages =	 {246--250},
  year =	 {1993},
  xissn =	 {1096-987X},
  xnote =	 {\httpAddr{//dx.doi.org/10.1002/jcc.540140212}},
}

@ARTICLE{Lorensen1987,
  author = {William E. Lorensen and Harvey E. Cline},
  title = {Marching cubes: A high resolution {3D} surface construction algorithm},
  longjournal = {ACM SIGGRAPH Computer Graphics},
  journal = {Comput.\ Graph.\ (ACM)},
  year = {1987},
  volume = {21},
  pages = {163--169},
  number = {4},
  OPTaddress = {New York, NY, USA},
  publisher = {ACM},
  doi = {10.1145/37402.37422}
}
%  note = {\httpAddr{//doi.acm.org/}},
%  issn = {0097-8930},

@misc{PaulBourke.May1994,
 author = {{Paul Bourke}},
 year = {May 1994},
 title = {Polygonising a scalar field: Also known as: {"}3\symbol{68} Contouring{"}, {"}Marching Cubes{"}, {"}Surface Reconstruction{"}},
 url = {http://paulbourke.net/geometry/polygonise/},
 note = {(Retrieved 2013-05-22)}
}

@inproceedings{Attali,
 author = {Attali, Dominique and C{ohen-Steiner}, David and Edelsbrunner, Herbert},
 title = {Extraction and simplification of iso-surfaces in tandem},
 longbooktitle = {Proceedings of the third Eurographics Symposium on Geometry Processing},
 booktitle = {Proc. 3\xrd Eurographics Symp.\ Geometry Processing},
 series = {SGP'05},
 year = {2005},
 location = {Vienna, Austria},
 articleno = {139},
 publisher = {Eurographics},
 Xaddress = {Switzerland},
}
%address = {Aire-la-Ville, Switzerland, Switzerland},
% isbn = {3-905673-24-X},
% note = {\httpAddr{//dl.acm.org/citation.cfm?id=1281920.1281943}},
% acmid = {1281943},

@ARTICLE{Treece1999,
  author = {G. M. Treece and R. W. Prager and A. H. Gee},
  title = {Regularised marching tetrahedra: improved iso-surface extraction},
  longjournal = {Computers \& Graphics},
  journal = {Comput. Graph.},
  year = {1999},
  volume = {23},
  pages = {583--598},
  number = {4},
  opt-url = {citeseer.ist.psu.edu/treece98regularised.html},
}

@INPROCEEDINGS{Schaefer2004,
  author = {Scott Schaefer and Joe Warren},
  title = {Dual Marching Cubes: Primal Contouring of Dual Grids},
  booktitle = {Proc.\ Pacific Conf. Computer Graphics},
  year = {2004},
  pages = {70--76},
  Xaddress = {Washington, DC, USA},
  Xmonth = {6-8 October},
  Xpublisher = {IEEE CS},
  abstract = {We present a method for contouring an implicit function using a grid
	topologically dual to structured grids such as octrees. By aligning
	the vertices of the dual grid with the features of the implicit function,
	we are able to reproduce thin features of the extracted surface without
	excessive sub-division required by methods such as Marching Cubes
	or Dual Contouring. Dual Marching Cubes produces a crack-free, adaptive
	polygonalization of the surface that reproduces sharp features. Our
	approach maintains the advantage of using structured grids for operations
	such as CSG while being able to conform to the relevant features
	of the implicit function yielding much sparser polygonalizations
	than has been possible using structured grids.},
  isbn = {0-7695-2234-3}
}
%  longpublisher = {IEEE Computer Society},
%  series = {PG'04},

@ARTICLE{Wilhelms1990,
  author = {Jane Wilhelms and Allen Van Gelder},
  title = {Octrees for faster isosurface generation},
  longjournal = {ACM SIGGRAPH Computer Graphics},
  journal = {Comput.\ Graph.\ (ACM)},
  year = {1990},
  volume = {24},
  pages = {57--62},
  number = {5},
  month = {November},
  address = {New York, NY, USA},
  publisher = {ACM},
  doi = {10.1145/99308.99321}
}
%  note = {\httpAddr{//doi.acm.org/}},
%  issn = {0097-8930},

@TechReport{Livnat1999-,
  author =    "Y. Livnat",
  title =     "{NOISE}, {WISE} and {SAGE}: Algorithms for Rapid
              Isosurface Extraction",
  number =    "UUSCI-1999-001",
  year =      "1999",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  month =     "December",
  keywords =  "scalar field methods, isosurface extraction",
  note = {\httpAddr{//www.sci.utah.edu/publications/SCITechReports/UUSCI-1999-001.pdf}}
}
%  timestamp = {2008.05.28},
%  note = {\httpAddr{//www.cs.utah.edu/\textasciitilde yarden/ phd/dissertation.pdf}}

@phdthesis{Livnat1999,
 author = {Livnat, Yarden},
 advisor = {Johnson, Christopher R.},
 title = {{Noise}, {Wise} and {Sage}: Algorithms for Rapid Isosurface Generation},
 year = {1999},
 isbn = {0-599-52570-3},
 Xnote = {AAI9950442},
 school = {University of Utah},
}

@INPROCEEDINGS{Shen1996,
  author = {Han-Wei Shen and Charles D. Hansen and Yarden Livnat and Christopher
	R. Johnson},
  title = {Isosurfacing in span space with utmost efficiency {(ISSUE)}},
  origbooktitle = {VIS'96: Proceedings of the 7th Conference on Visualization'96},
  booktitle = {Proc.\ Conf.\ Visualization'96},
  year = {1996},
  series = {VIS'96},
  pages = {287--295},
  OPTaddress = {Los Alamitos, CA, USA},
  month = {28-29 October},
  longpublisher = {IEEE Computer Society Press},
  publisher = {IEEE CS},
  isbn = {0-89791-864-9},
  OPTlocation = {San Francisco, California, United States}
}

@TECHREPORT{Mueller1991-,
  author = {Heinrich Mueller and Michael Stark},
  title = {Adaptive Generation of Surfaces in Volume Data},
  year = {1991},
}

@article{Mueller1991,
  year =	 {1993},
  issn =	 {0178-2789},
  longjournal =	 {The Visual Computer},
  journal =	 {Visual Comput.},
  volume =	 {9},
  number =	 {4},
  doi =		 {10.1007/BF01901723},
  title =	 {Adaptive generation of surfaces in volume data},
  Xurl =	 {http://dx.doi.org/10.1007/BF01901723},
  publisher =	 {Springer-Verlag},
  keywords =	 {Volume visualization; Marching cubes; Adaptive
                  subdivision; Generic surfaces},
  author =	 {M{\"u}ller, Heinrich and Stark, Michael},
  pages =	 {182--199},
  language =	 {English}
}

@article{Dupuy2010,
  hal_id =	 {inria-00436423},
  title =	 {Parallel extraction and simplification of large
                  isosurfaces using an extended tandem algorithm},
  author =	 {Dupuy, Guilhem and Jobard, Bruno and Guillon,
                  Sebastien and Keskes, Noomane and Komatitsch,
                  Dimitri},
  language =	 {Anglais},
  affiliation =	 {Laboratoire Informatique de l'Universit{\'e} de Pau
                  et des Pays de l'Adour - LIUPPA , TOTAL-Scientific
                  and Technical Center Jean F{\'e}ger - CSTJF ,
                  MAGIQUE-3D - INRIA Bordeaux - Sud-Ouest ,
                  Mod{\'e}lisation et Imagerie en G{\'e}osciences -
                  Pau - MIGP},
  publisher =	 {Elsevier},
  pages =	 {129-138},
  longjournal =	 {Computer-Aided Design},
  journal =	 {Comput.\ Aided Design},
  volume =	 {42},
  number =	 {2 },
  doi =		 {10.1016/j.cad.2009.04.016},
  year =	 {2010}
}

@misc{StefanRoettger,
 author = {Roettger, Stefan},
 title = {The Volume Library},
 note = {Retrieved 2013-05-22},
 url = {http://www9.informatik.uni-erlangen.de/External/vollib/},
 year = {2013},

}
 %urldate     = {2013-05-22}

@inproceedings{Johansson:2006:AMC:1188966.1189018,
 author = {Johansson, Gunnar and Carr, Hamish},
 title = {Accelerating marching cubes with graphics hardware},
 longbooktitle = {Proceedings of the 2006 Conference of the Center for Advanced Studies on Collaborative research},
 booktitle = {Proc.\ Conf.\ Center for Advanced Studies on Collaborative research},
 series = {CASCON'06},
 year = {2006},
 OPTlocation = {Toronto, Ontario, Canada},
 articleno = {39},
 publisher = {ACM},
 OPTaddress = {New York, NY, USA},
}

@inproceedings{Tatarchuk:2007:RIE:1281500.1361219,
 author = {Tatarchuk, Natalya and Shopf, Jeremy and DeCoro, Christopher},
 title = {Real-Time Isosurface Extraction Using the \symbol{71}\symbol{80}\symbol{85} Programmable Geometry Pipeline},
 booktitle = {ACM SIGGRAPH 2007 courses},
 series = {SIGGRAPH'07},
 year = {2007},
 pages = {122--137},
 numpages = {16},
 publisher = {ACM},
}
% location = {San Diego, California},
% address = {New York, NY, USA},

@inproceedings{Reck:2004:GpuMC,
	author = {Reck, Frank and Dachsbacher, Carsten and Grosso, Roberto and Greiner, G\"unther and Stamminger, Marc},
	title = {Realtime Isosurface Extraction with Graphics Hardware},
	booktitle = {Eurographics 2004, Short Presentations and Interactive Demos},
	year = {2004},
	pages = {33--36},
}

@article {CGF:CGF1182,
author = {Dyken, Christopher and Ziegler, Gernot and Theobalt, Christian and Seidel, Hans-Peter},
title = {High-speed Marching Cubes using HistoPyramids},
longjournal = {Computer Graphics Forum},
journal = {Comput.\ Graph.\ Forum},
volume = {27},
number = {8},
publisher = {Blackwell Publishing Ltd},
issn = {1467-8659},
doi = {10.1111/j.1467-8659.2008.01182.x},
pages = {2028--2039},
keywords = {volume processing, marching cubes, real-time, GPU, GPGPU, histopyramids, OpenGL, gather-only, data expansion, geometry shader},
keywords = {I.3.5 [Computer Graphics]: Computational Geometry and Object Modelling, I.3.7 [Computer Graphics]: Three-Dimensional Graphics and Realism},
year = {2008},
}

@article{Newman2006854,
title = "A survey of the marching cubes algorithm",
longjournal = "Computers \& Graphics",
journal = "Comput.\ Graph.",
volume = "30",
number = "5",
pages = "854--879",
year = "2006",
note = "",
issn = "0097-8493",
doi = "10.1016/j.cag.2006.07.021",
Xurl = "http://www.sciencedirect.com/science/article/pii/S0097849306001336",
author = "Timothy S. Newman and Hong Yi",
keywords = "Marching cubes",
keywords = "Isosurface extraction",
keywords = "Indirect volume rendering",
keywords = "Volume visualization",
keywords = "Scientific visualization "
}

@article{soft-obj,
year={1986},
issn={0178-2789},
longjournal={The Visual Computer},
journal={Visual Comput.},
volume={2},
number={4},
doi={10.1007/BF01900346},
title={Data structure for soft objects},
OPTurl={http://dx.doi.org/10.1007/BF01900346},
longpublisher={Springer-Verlag},
publisher={Springer},
keywords={Soft objects; Geometric modelling; Computer animation},
author={Wyvill, Geoff and McPheeters, Craig and Wyvill, Brian},
pages={227--234},
language={English}
}

@InProceedings{Cuccuru:2009:FLM,
    author = {Gianmauro Cuccuru and Enrico Gobbetti and Fabio Marton and Renato Pajarola and Ruggero Pintus},
    title = {Fast low-memory streaming MLS reconstruction of point-sampled surfaces},
    booktitle = {Graphics Interface},
    pages = {15--22},
    month = {May},
    year = {2009},
    abstract = { We present a simple and efficient method for reconstructing triangulated surfaces from massive oriented point sample datasets. The method combines streaming and parallelization, moving least-squares (MLS) projection, adaptive space subdivision, and regularized isosurface extraction. Besides presenting the overall design and evaluation of the system, our contributions include methods for keeping in-core data structures complexity purely locally output-sensitive and for exploiting both the explicit and implicit data produced by a MLS projector to produce tightly fitting regularized triangulations using a primal isosurface extractor. Our results show that the system is fast, scalable, and accurate. We are able to process models with several hundred million points in about an hour and outperform current fast streaming reconstructors in terms of geometric accuracy. },
    url = {http://vic.crs4.it/vic/cgi-bin/bib-page.cgi?id='Cuccuru:2009:FLM'},
}

@article{Svitak:2004:RTS,
 author = {Svit\'{a}k, Radek and Skala, V\'{a}clav},
 title = {A Robust Technique for Surface Reconstruction from Orthogonal Slices},
 journal = {MG\&V},
 issue_date = {January 2004},
 volume = {13},
 number = {3},
 month = jan,
 year = {2004},
 issn = {1230-0535},
 pages = {221--233},
 numpages = {13},
 url = {http://dl.acm.org/citation.cfm?id=1073547.1073550},
 acmid = {1073550},
 publisher = {Polish Academy of Sciences},
 address = {Warsaw, Poland, Poland},
 keywords = {contour correspondence, orthogonal cross-sections, orthogonal slices, surface reconstruction},
}

@inproceedings{Svitak:2002:SROS,
	author = {Svit\'{a}k, Radek and Skala, V\'{a}clav},
	title = {Surface Reconstruction from Orthogonal Slices},
	booktitle = {ICCVG 2002},
	year = {2002}
}

@article{saalfeld,
  added-at = {2013-03-20T17:10:26.000+0100},
  author = {Saalfeld, Stephan and Fetter, Richard and Cardona, Albert and Tomancak, Pavel},
  biburl = {http://www.bibsonomy.org/bibtex/2be107e540e66cf18d6f142b30d3e761f/alex_ruff},
  comment = {10.1038/nmeth.2072},
  description = {Elastic volume reconstruction from series of ultra-thin microscopy sections : Nature Methods : Nature Publishing Group},
  interhash = {bb2358a34b93f04a0aae849d87cfafd7},
  intrahash = {be107e540e66cf18d6f142b30d3e761f},
  issn = {15487091},
  fulljournal = {Nature Methods},
  journal = {Nat.\ Methods},
  keywords = {data_analysis microscopy registration to_READ visualization},
  OPTmonth = jul,
  number = 7,
  pages = {717--720},
  longpublisher = {Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
  publisher = {Nature Publishing Group},
  timestamp = {2013-03-20T17:10:26.000+0100},
  title = {Elastic volume reconstruction from series of ultra-thin microscopy sections},
  OPTurl = {http://dx.doi.org/10.1038/nmeth.2072},
  doi = {10.1038/nmeth.2072},
  volume = 9,
  year = 2012
}

@article{Buhmann:1998:DCQ,
	AUTHOR = {J. M. Buhmann and D. W. Fellner and M. Held and J.
		Ketterer and J. Puzicha},
	TITLE = {Dithered Color Quantization},
	JOURNAL = cgforum,
	XEDITOR = {N. Ferreira and M. G{\"{o}}bel},
	VOLUME = {17},	NUMBER = {3},
	MONTH = Sep,	YEAR = {1998},	PAGES = {C219-C231},
	DOI = {10.1111/1467-8659.00269},
  NOTE = {(Proc. Eurographics'98)
	       \httpAddr{//diglib.eg.org/EG/CGF/volume17/issue3/ColQuant98}} }

@ARTICLE{Fellner-Helmberg93,
	AUTHOR = {Fellner, Dieter W. and Helmberg, Christoph},
	TITLE = {Robust Rendering of General Ellipses and Elliptical Arcs},
	JOURNAL = tog,
	VOLUME = {12},	NUMBER = {3},
	MONTH = Jul,	YEAR = {1993},	PAGES = {251-276},
  DOI= {10.1145/169711.169704}
  }

@BOOK (FolDamFeiHug.etal93,
	AUTHOR = {Foley, James D. and van Dam, Andries and
		Feiner, Stephen K. and Hughes, John F. and Phillips, R.},
	TITLE = {Introduction to Computer Graphics},
	PUBLISHER = {Addison-Wesley},
	YEAR = {1993} )

@ARTICLE{Kobbelt97-USHDR,
	author = {L. Kobbelt and M. Stamminger and H.-P. Seidel},
	title = {Using Subdivision on Hierarchical Data to Reconstruct Radiosity
		Distribution},
	JOURNAL = cgforum,
	volume = 16,	number = 3,	pages = {C347-C355},
	year = 1997,
	DOI = {10.1111/1467-8659.16.3conferenceissue.36},
	note = {(Proc. Eurographics'97)
	       \httpAddr{//diglib.eg.org/EG/CGF/volume16/issue3/CGF172.html}} }

@INPROCEEDINGS{Lafortune97-NARF,
	author = {Eric P. Lafortune and Sing-Choong Foo and Kenneth E. Torrance and
		Donald P. Greenberg},
	title = {Non-Linear Approximation of Reflectance Functions},
	Xbooktitle = {Proc. SIGGRAPH'97},
	volume = 31,	pages = {117-126},
	year = 1997,
	DOI = {10.1145/258734.258801}
  }

@ARTICLE (Lous90,
	AUTHOR = {Y. Le Lous},
	TITLE = {Report on the {F}irst {E}urographics {W}orkshop on {V}isualization in
		{S}cientific {C}omputing},
	JOURNAL = cgforum,
	VOLUME = {9},	NUMBER = {4},
	MONTH = dec,	YEAR = {1990},	PAGES = {371-372},
  DOI= {10.1111/j.1467-8659.1990.tb00430.x}
  )

@ARTICLE (Seidel93,
	AUTHOR = {Seidel, Hans-Peter},
	TITLE = {Polar Forms for Geometrically Continuous Spline Curves of
		Arbitrary Degree},
	JOURNAL = tog,
	VOLUME = {12},	NUMBER = {1},
	MONTH = Jan,	YEAR = {1993},	PAGES = {1-34},
  DOI= {10.1145/169728.169726}
  )

@article{bay08surf,
	author = {Herbert Bay and Andreas Ess and Tinne Tuytelaars and Luc {Van Gool}},
	title = {{SURF}: {S}peeded {U}p {R}obust {F}eatures},
	longjournal = {Computer Vision and Image Understanding (CVIU)},
        journal = {Comput.\ Vis.\ Image Underst.},
	volume = {110},
	number = {3},
	pages = {346--359},
	year = 2008
}
@article{surf2,
title = "Speeded-Up Robust Features ({SURF}) ",
longjournal = "Computer Vision and Image Understanding ",
journal = 	 {Comput. Vision Image Understanding},
volume = "110",
number = "3",
pages = "346--359",
year = "2008",
xnote = "<ce:title>Similarity Matching in Computer Vision and Multimedia</ce:title> ",
issn = "1077-3142",
doi = "10.1016/j.cviu.2007.09.014",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S1077314207001555",
author = "Herbert Bay and Andreas Ess and Tinne Tuytelaars and Luc Van Gool",
keywords = "Interest points",
keywords = "Local features",
keywords = "Feature description",
keywords = "Camera calibration",
keywords = "Object recognition "
}

@incollection{features-compare,
year={2012},
isbn={978-3-642-33708-6},
booktitle={Computer Vision -- ECCV 2012},
Xbooktitle={ECCV'12},
longseries={Lecture Notes in Computer Science},
series={LNCS 7573},
editor={Fitzgibbon, Andrew and Lazebnik, Svetlana and Perona, Pietro and Sato, Yoichi and Schmid, Cordelia},
doi={10.1007/978-3-642-33709-3_54},
title={Comparative Evaluation of Binary Features},
OPTurl={http://dx.doi.org/10.1007/978-3-642-33709-3_54},
publisher={Springer Berlin Heidelberg},
Xpublisher={Springer},
keywords={binary features; comparison; evaluation},
author={Heinly, Jared and Dunn, Enrique and Frahm, Jan-Michael},
pages={759--773},
}

@article{Zitova2003977,
title = "Image registration methods: a survey ",
longjournal = "Image and Vision Computing ",
journal = "Image Vis.\ Comput.",
volume = "21",
number = "11",
pages = "977--1000",
year = "2003",
note = "",
issn = "0262-8856",
doi = "10.1016/S0262-8856(03)00137-9",
utf8-author = "Barbara Zitová and Jan Flusser",
author = "Barbara Zitov{\'{a}} and Jan Flusser",
keywords = "Image registration",
keywords = "Feature detection",
keywords = "Feature matching",
keywords = "Mapping function",
keywords = "Resampling "
}
%url = "http://www.sciencedirect.com/science/article/pii/S0262885603001379",

@article{fischler81ransac,
 author = {Fischler, Martin A. and Bolles, Robert C.},
 title = {Random Sample Consensus: A~Paradigm for Model Fitting with Applications to Image Analysis and Automated Cartography},
 journal = {Commun.\ ACM},
 issue_date = {June 1981},
 volume = {24},
 number = {6},
 OPTmonth = jun,
 year = {1981},
 issn = {0001-0782},
 pages = {381--395},
 numpages = {15},
 doi = {10.1145/358669.358692},
 acmid = {358692},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {automated cartography, camera calibration, image matching, location determination, model fitting, scene analysis},
}
% url = {http://doi.acm.org/10.1145/358669.358692},

@inproceedings{lucas1981iterative,
  title={An iterative image registration technique with an application to stereo vision.},
  author={Lucas, Bruce D and Kanade, Takeo},
  Xbooktitle={IJCAI'81},
  booktitle={International Joint Conference on Artificial Intelligence},
  series = {IJCAI'81},
  badvolume={81},
  pages={674--679},
  year={1981}
}
@article{Brown:1992:SIR:146370.146374,
 author = {Brown, Lisa Gottesfeld},
 title = {A Survey of Image Registration Techniques},
 journal = {ACM Comput. Surv.},
 issue_date = {Dec. 1992},
 volume = {24},
 number = {4},
 OPTmonth = dec,
 year = {1992},
 issn = {0360-0300},
 pages = {325--376},
 numpages = {52},
 doi = {10.1145/146370.146374},
 acmid = {146374},
 publisher = {ACM},
 OPTaddress = {New York, NY, USA},
 keywords = {image registration, image warping, rectification, template matching},
}
% url = {http://doi.acm.org/10.1145/146370.146374},

@article {HBM:HBM460030303,
author = {Friston, Karl. J. and Ashburner, J. and Frith, C. D. and Poline, J.-B. and Heather, J. D. and Frackowiak, R. S. J.},
title = {Spatial registration and normalization of images},
longjournal = {Human Brain Mapping},
journal = {Hum.\ Brain Mapp.},
volume = {3},
number = {3},
longpublisher = {Wiley Subscription Services, Inc., A Wiley Company},
publisher = {Wiley},
issn = {1097-0193},
doi = {10.1002/hbm.460030303},
pages = {165--189},
keywords = {realignment, registration, anatomy, imaging, stereotaxy, morphometrics, basis functions, spatial normalization, PET, MRI, functional mapping},
year = {1995},
}
%url = {http://dx.doi.org/10.1002/hbm.460030303},

@INPROCEEDINGS{6098290,
author={Tanacs, A. and Kato, Z.},
longXbooktitle={Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on},
booktitle={Conf.\ Biomedical Engineering and Informatics},
title={Fast linear registration of {3D} objects segmented from medical images},
year={2011},
series = {BMEI'11},
OPTvolume={1},
pages={294--298},
keywords={computerised tomography;image registration;image segmentation;medical image processing;3D object segmentation;computerized tomography;linear registration;medical image;mutual information-based registration method;pelvic CT image;segmentation error;thoracic CT image;Biomedical imaging;Bones;Computed tomography;Equations;Image segmentation;Mathematical model;Three dimensional displays},
doi={10.1109/BMEI.2011.6098290},}

@comment{----------------- medical:}
@article{Ma2008967,
title = "Serial sectioning and three-dimensional reconstruction of mouse Peyer's patch ",
journal = "Micron ",
volume = "39",
number = "7",
pages = "967--975",
year = "2008",
note = "",
issn = "0968-4328",
doi = "10.1016/j.micron.2007.10.007",
author = "Bin Ma and Lei Wang and Reinhard von Wasielewski and Werner Lindenmaier and Kurt E.J. Dittmar",
keywords = "Serial section",
keywords = "3D reconstruction",
keywords = "Mouse",
keywords = "Peyer's patch "
}
%url = "http://www.sciencedirect.com/science/article/pii/S0968432807001734",

@article{Ma2008387,
title = "Automatic registration of serial sections of mouse lymph node by using Image-Reg ",
journal = "Micron ",
volume = "39",
number = "4",
pages = "387--396",
year = "2008",
note = "",
issn = "0968-4328",
doi = "10.1016/j.micron.2007.03.005",
author = "Bin Ma and Zhuang Lin and Simon Winkelbach and Werner Lindenmaier and Kurt E.J. Dittmar",
keywords = "Image registration",
keywords = "Alignment",
keywords = "Serial section",
keywords = "Mouse",
keywords = "Lymph node "
}
%url = "http://www.sciencedirect.com/science/article/pii/S0968432807000522",

@article{Steiniger01052003,
author = {Steiniger, Birte S. and R\"uttinger, Lars and Barth, Peter J.},
title = {The Three-dimensional Structure of Human Splenic White Pulp Compartments},
volume = {51},
number = {5},
pages = {655-663},
year = {2003},
doi = {10.1177/002215540305100511},
abstract ={The precise arrangement of B- and T-lymphocytes in the different compartments of the human splenic white pulp is still largely unknown. We therefore performed a 3D reconstruction of 150 serial sections of a representative adult human spleen alternately stained for CD3 and CD20. The results indicate that the T-cell regions of human spleens may be interrupted by B-cell follicles. Therefore, there is no continuous periarteriolar lymphatic T-cell sheath (PALS) around white pulp arterioles. An arteriole may be surrounded by T-lymphocytes at one level, then run across a follicle without any T-cells around, and finally re-enter a T-cell region. T- and B-cell compartments are intricately interdigitated in the human splenic white pulp. CD4+ T-lymphocytes and the typical fibroblasts of the T-cell region may extend as a thin shell at the follicular surface within the marginal zone. On the other hand, IgD++ B-cells continue from the follicular outer marginal zone along the surface of the T-cell region. Our findings indicate that the microanatomy of the splenic white pulp differs between humans and rodents. This may have consequences for the immigration of recirculating lymphocytes and for initial interactions among antigen-specific T- and B-lymphocytes.},
longjournal = {Journal of Histochemistry \& Cytochemistry},
journal = {J.\ Histochem.\ Cytochem.}
}
%URL = {http://jhc.sagepub.com/content/51/5/655.abstract},
%eprint = {http://jhc.sagepub.com/content/51/5/655.full.pdf+html},

@comment{----------------------- non-rigid}
@article{Chui2003114,
title = "A new point matching algorithm for non-rigid registration ",
longjournal = "Computer Vision and Image Understanding ",
journal = 	 {Comput. Vision Image Understanding},
volume = "89",
number = "2--3",
pages = "114--141",
year = "2003",
xnote = "<ce:title>Nonrigid Image Registration</ce:title> ",
issn = "1077-3142",
doi = "10.1016/S1077-3142(03)00009-2",
author = "Haili Chui and Anand Rangarajan",
keywords = "Registration",
keywords = "Non-rigid mapping",
keywords = "Correspondence",
keywords = "Feature-based",
keywords = "Softassign",
keywords = "Thin-plate splines (TPS)",
keywords = "Robust point matching (RPM)",
keywords = "Linear assignment",
keywords = "Outlier rejection",
keywords = "Permutation matrix",
keywords = "Brain mapping "
}
%url = "http://www.sciencedirect.com/science/article/pii/S1077314203000092",

@incollection{non-rigid-multilevel,
year={2001},
isbn={978-3-540-42697-4},
Xbooktitle={Medical Image Computing and Computer-Assisted Intervention},
longvolume={2208},
conference = {MICCAI 2001},
booktitle = {MICCAI'01},
longseries={Lecture Notes in Computer Science},
series = {LNCS 2208},
Xeditor={Niessen, Wiro J. and Viergever, Max A.},
doi={10.1007/3-540-45468-3_69},
title={A Generic Framework for Non-rigid Registration Based on Non-uniform Multi-level Free-Form Deformations},
longpublisher={Springer Berlin Heidelberg},
publisher={Springer},
allauthor={Schnabel, Julia A. and Rueckert, Daniel and Quist, Marcel and Blackall, Jane M. and Castellano-Smith, Andy D. and Hartkens, Thomas and Penney, Graeme P. and Hall, Walter A. and Liu, Haiying and Truwit, Charles L. and Gerritsen, Frans A. and Hill, Derek L. G. and Hawkes, David J.},
author={Schnabel, Julia A. and Rueckert, Daniel and Quist, Marcel and Blackall, Jane M. and Castellano-Smith, Andy D. and Hartkens, Thomas and Penney, Graeme P. and Hall, Walter A. and Liu, Haiying and others},
pages={573--581},
language={English}
}
%url={http://dx.doi.org/10.1007/3-540-45468-3_69},

@INPROCEEDINGS{1398686,
author={Bhatia, K. K. and Hajnal, J. V. and Puri, B. K. and Edwards, A. D. and Rueckert, D.},
Xbooktitle={Biomedical Imaging: Nano to Macro, 2004. IEEE International Symposium on},
title={Consistent groupwise non-rigid registration for atlas construction},
year={2004},
pages={908--911 Vol. 1},
keywords={biomechanics;biomedical MRI;brain;deformation;image registration;medical image processing;optimisation;atlas construction;brain MR images;consistent groupwise nonrigid registration;constrained optimization;gradient projection method;schizophrenia;Biomedical imaging;Educational institutions;Gynaecology;Image registration;Information processing;Magnetic resonance;Magnetic resonance imaging;Pediatrics;Registers;Shape},
doi={10.1109/ISBI.2004.1398686},}

@incollection{non-rigid-demon-disc,
year={1999},
isbn={978-3-540-66503-8},
Xbooktitle={Medical Image Computing and Computer-Assisted Intervention -- MICCAI'99},
volume={1679},
series={Lecture Notes in Computer Science},
Xeditor={Taylor, Chris and Colchester, Alain},
doi={10.1007/10704282_64},
title={Understanding the ``Demon's Algorithm'': {3D} Non-rigid Registration by Gradient Descent},
publisher={Springer Berlin Heidelberg},
author={Pennec, Xavier and Cachier, Pascal and Ayache, Nicholas},
pages={597--605}
}
%url={http://dx.doi.org/10.1007/10704282_64},

@article{Bajcsy19891,
title = "Multiresolution elastic matching ",
longjournal = "Computer Vision, Graphics, and Image Processing ",
journal = "Comput.\ Vis.\ Gr.\ Image Process.",
volume = "46",
number = "1",
pages = "1--21",
year = "1989",
note = "",
issn = "0734-189X",
doi = "10.1016/S0734-189X(89)80014-3",
Xurl = "http://www.sciencedirect.com/science/article/pii/S0734189X89800143",
utf8-author = "Ruzena Bajcsy and Stane Kovačič",
author = "Ruzena Bajcsy and Stane {Kova\v{c}i\v{c}}",
mynote = {matching with linear corellation, historic}
}
@article{Thirion1998243,
title = "Image matching as a diffusion process: an analogy with {Maxwell's} demons ",
longjournal = "Medical Image Analysis ",
journal = "Med.\ Image Anal.",
volume = "2",
number = "3",
pages = "243--260",
year = "1998",
note = "",
issn = "1361-8415",
doi = "10.1016/S1361-8415(98)80022-4",
author = "J.-P. Thirion",
keywords = "deformable model",
keywords = "elastic matching",
keywords = "image sequence analysis",
keywords = "inter-patient registration",
keywords = "non-rigid matching ",
mynote = {non-rigid, duffusion, "the demon algorithm", discussion: non-rigid-demon-disc}
}
%url = "http://www.sciencedirect.com/science/article/pii/S1361841598800224",

@ARTICLE{796284,
author={Rueckert, D. and Sonoda, L. I. and Hayes, C. and Hill, D. L G and Leach, M. O. and Hawkes, D.J.},
longjournal={Medical Imaging, IEEE Transactions on},
journal = {IEEE T.\ Med.\ Imaging},
title={Nonrigid registration using free-form deformations: application to breast {MR} images},
year={1999},
volume={18},
number={8},
pages={712-721},
keywords={biomechanics;biomedical MRI;image motion analysis;image registration;mammography;medical image processing;splines (mathematics);B-splines;MR mammography;MRI;affine transformation;breast motion;contrast enhancement;free-form deformation;global motion;hierarchical transformation model;intensity changes;local breast motion;magnetic resonance imaging;medical diagnostic imaging;voxel-based similarity measure;Biomedical imaging;Breast cancer;Breast tissue;Cancer detection;Cost function;Cyclic redundancy check;Diseases;Magnetic resonance imaging;Mammography;Medical diagnostic imaging;Breast;Female;Humans;Image Processing, Computer-Assisted;Magnetic Resonance Imaging},
doi={10.1109/42.796284},
mynote = {registration, non-rigid, using splines; but: 3d data???},
ISSN={0278-0062},}

@ARTICLE{5438962,
author={Shams, R. and Sadeghi, P. and Kennedy, R.A. and Hartley, R.I.},
longjournal={Signal Processing Magazine, IEEE},
journal={IEEE Signal Process.\ Mag.},
title={A Survey of Medical Image Registration on Multicore and the {GPU}},
year={2010},
volume={27},
number={2},
pages={50--60},
keywords={computer graphic equipment;coprocessors;image registration;medical image processing;parallel architectures;GPU;accelerator implementations;distributed memory;high-performance computing architectures;medical image registration;multicore platforms;nonuniform memory access;parallel computing;symmetric multiprocessing;Biomedical imaging;Cancer;Computed tomography;Computer architecture;Image registration;Laparoscopes;Multicore processing;Pancreas;Surges;Ultrasonic imaging},
doi={10.1109/MSP.2009.935387},
ISSN={1053-5888},}

@article{Lester1999129,
title = "A survey of hierarchical non-linear medical image registration ",
longjournal = "Pattern Recognition ",
journal = "Pattern Recognit.",
volume = "32",
number = "1",
pages = "129--149",
year = "1999",
note = "",
issn = "0031-3203",
doi = "10.1016/S0031-3203(98)00095-8",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S0031320398000958",
author = "Hava Lester and Simon R. Arridge",
keywords = "Non-linear registration",
keywords = "Anisotropic scale space",
keywords = "Landmark-based splines",
keywords = "Elastic warping",
keywords = "Fluid deformation ",
mynote = "special focus on non-rigid",
}

@book{hajnal2010medical,
  title={Medical image registration},
  author={Hajnal, Joseph V and Hill, Derek LG},
  year={2010},
  publisher={CRC}
}

@article{Hibbard198855,
title = "Objective image alignment for three-dimensional reconstruction of digital autoradiograms ",
journal = "Journal of Neuroscience Methods ",
volume = "26",
number = "1",
pages = "5574",
year = "1988",
note = "",
issn = "0165-0270",
doi = "http://dx.doi.org/10.1016/0165-0270(88)90129-X",
Xurl = "http://www.sciencedirect.com/science/article/pii/016502708890129X",
author = "Lyndon S. Hibbard and Richard A. Hawkins",
keywords = "Image registration",
keywords = "Digital image processing",
keywords = "Rat brain autoradiograms",
keywords = "[<sup>14</sup>C]Glucose autoradiography ",
mynote = "method of the moments"
}

@article{opencv,
    author = {Bradski, G.},
    citeulike-article-id = {2236121},
    journal = {Dr. Dobb's Journal of Software Tools},
    keywords = {bibtex-import},
    posted-at = {2008-01-15 19:21:54},
    priority = {4},
    title = {{The OpenCV Library}},
    year = {2000}
}

@article{0031-9155-46-3-201,
  author={Derek L G Hill and Philipp G Batchelor and Mark Holden and David J Hawkes},
  title={Medical image registration},
  journal = 	 {Phys.\ Med.\ Biol.},
  longjournal={Physics in Medicine and Biology},
  volume={46},
  number={3},
  pages={R1--R45},
  Xurl={http://stacks.iop.org/0031-9155/46/i=3/a=201},
  year={2001},
  abstract={Radiological images are increasingly being used in healthcare and medical research. There is, consequently, widespread interest in accurately relating information in the different images for diagnosis, treatment and basic science. This article reviews registration techniques used to solve this problem, and describes the wide variety of applications to which these techniques are applied. Applications of image registration include combining images of the same subject from different modalities, aligning temporal sequences of images to compensate for motion of the subject between scans, image guidance during interventions and aligning images from multiple subjects in cohort studies. Current registration algorithms can, in many cases, automatically register images that are related by a rigid body transformation (i.e. where tissue deformation can be ignored). There has also been substantial progress in non-rigid registration algorithms that can compensate for tissue deformation, or align images from different subjects. Nevertheless many registration problems remain unsolved, and this is likely to continue to be an active field of research in the future.}
}

@comment{books ------- }

@book{nrcpp,
 author = {Press, William H. and Teukolsky, Saul A. and Vetterling, William T. and Flannery, Brian P.},
 title = {Numerical Recipes: The Art of Scientific Computing},
 year = {2007},
 isbn = {0521880688, 9780521880688},
 edition = {3},
 publisher = {Cambridge University Press},
 OPTaddress = {New York, NY, USA},
}

@book{suru2005handbook,
  title={Handbook of biomedical image analysis},
  author={Suru, Jasjit S and Wilson, David Lynn and Laximinarayan, Swamy},
  volume={3},
  year={2005},
  publisher={Springer},
  mynote = {has non-rigid}
}

@book{scherzer2006mathematical,
  title={Mathematical models for registration and applications to medical imaging},
  editor={Scherzer, Otmar},
  OPTseries = {Mathematics in industry},
  OPTvolume={10},
  year={2006},
  publisher={Springer}
}
@book{goshtasby20052,
  title={{2-D} and {3-D} image registration: for medical, remote sensing, and industrial applications},
  author={Goshtasby, A Ardeshir},
  year={2005},
  publisher={Wiley},
  mynote={more basic, considers many options}
}

@article{Ourselin98automaticalignment,
  author =	 {S. Ourselin and A. Roche and G. Subsol and X. Pennec
                  and N. Ayache},
  title =	 {Reconstructing a {3D} structure from serial
                  histological sections},
  doi =		 {10.1016/S0262-8856(00)00052-4},
  longjournal =	 {Image and Vision Computing},
  journal =	 {Image Vis.\ Comput.},
  volume =	 {19},
  issue =	 {1--2},
  year =	 {2001},
  pages =	 {25--31},
}

@article{LeGall:1991:MVC:103085.103090,
 author = {Le Gall, Didier},
 title = {{MPEG}: A Video Compression Standard for Multimedia Applications},
 longjournal = {Communications of the ACM},
 journal = {Commun.\ ACM},
 issue_date = {April 1991},
 volume = {34},
 number = {4},
 OPTmonth = apr,
 year = {1991},
 issn = {0001-0782},
 pages = {46--58},
 numpages = {13},
 Xurl = {http://doi.acm.org/10.1145/103085.103090},
 doi = {10.1145/103085.103090},
 acmid = {103090},
 publisher = {ACM},
 OPTaddress = {New York, NY, USA},
}

@article{gijtenbeek2005semi-manual,
	longjournal = {Angiogenesis},
        journal = {Angiogenes.},
	year = {2005},
	volume ={8},
	number = {4},
	pages = {297--305},
	title = {Three-dimensional reconstruction of tumor microvasculature: simultaneous visualization of multiple components in paraffin-embedded tissue},
	author = {Gijtenbeek, J. M. and Wesseling, P. and Maass, C. and Burgers, L. and van der Laak, J. A.},
}

@article{gilhuis2006semi-manual,
	longjournal = {Angiogenesis},
        journal = {Angiogenes.},
	year = {2006},
	volume = {9},
	number ={4},
	pages = {201--208},
	title = {Three-dimensional {(3D)} reconstruction and quantitative analysis of the microvasculature in medulloblastoma and ependymoma subtypes},
	author = {Gilhuis, H. J. and van der Laak, J. A. and Pomp, J. and Kappelle, A. C. and Gijtenbeek, J. M. and Wesseling, P.},
}

@article{vankrieken85splenic,
	longjournal = {Histopathology},
        journal = {Histopathol.},
	year = {1985},
	volume = {9},
	number = {4},
	pages = {401--416},
	title = {The splenic red pulp; a histomorphometrical study in splenectomy specimens embedded in methylmethacrylate},
	author = {van Krieken, J. H. and Te Velde, J. and Hermans, J. and Welvaart, K.},
}

@article{steiniger2011spleen,
  longjournal =	 {Journal of Histochemistry \& Cytochemistry},
  journal =	 {J.\ Histochem.\ Cytochem.},
  year =	 {2011},
  volume =	 {59},
  number =	 {6},
  pages =	 {639--648},
  doi =		 {10.1369/0022155411408315},
  title =	 {The open microcirculation in human spleens: a
                  three-dimensional approach},
  author =	 {Steiniger, B. S. and Bette, M. and Schwarzbach, H.},
}

@inproceedings{doi:10.1117/12.2007153,
author = {Wan, Tao and Bloch, B. Nicolas and Danish, Shabbar and Madabhushi, Anant},
title = {A novel point-based nonrigid image registration scheme based on learning optimal landmark configurations},
LONGbooktitle = {Medical Imaging 2013: Image Processing},
series = {Proc.\ SPIE 8669},
OPTnumber = {},
pages = {866934-866934-12},
abstract = {Image registration plays an increasingly important role in the field of medical image processing given the plurality
of images often acquired from different sensors, time points, or viewpoints. Landmark-based registration schemes
represent the most popular class of registration methods due to their simplicity and high accuracy. Previous
studies have shown that these registration schemes are sensitive to the number and location of landmarks.
Identifying important landmarks to perform an accurate registration remains a very challenging task. Current
landmark selection methods, such as feature-based approaches, focus on optimization of global transformation
and may have poor performance in recovering local deformation, e.g. subtle tissue changes caused by tumor
resection, making them inappropriate for registering pre- and post-surgery images as a small cancerous region
will be deformed after removing a tumor. In this work, a novel method is introduced to estimate optimal landmark
configurations. An important landmark configuration that will be used as a training landmark set was learned
for an image pair with a known deformation. This landmark configuration can be considered as a collection
of discrete points. A generic transformation matrix between a pair of training landmark sets with different
deformation locations was computed via an iterative close point (ICP) alignment technique. A new landmark
configuration was determined by simply transforming the training landmarks to the current displacement location
while preserving the topological structure of the configuration of landmarks. Two assumptions are made: 1) In
a new pair of images the deformation is approximately the same size and has only been spatially relocated in the
image, and that by a simple affine transformation one can identify the optimal configuration on this new pair of
images; and 2) The deformation is of similar size and shape on the original pair of images. These are reasonable
assumptions in many cases where one seeks to register tumor images at multiple time points following application
of therapy and to evaluate changes in tumor size. The experiments were conducted on 286 pairs of synthetic
MRI brain images. The training landmark configurations were obtained through 2000 iterations of registration
where the points with consistently best registration performance were selected. The estimated landmarks greatly
improved the quality metrics compared to a uniform grid placement scheme and a speeded-up robust features
(SURF) based method as well as a generic free-form deformation (FFD) approach. The quantitative results
showed that the new landmark configuration achieved 95\% improvement in recovering the local deformation
compared to 89\% for the uniform grid placement, 79\% for the SURF-based approach, and 10\% for the generic
FFD approach.
},
year = {2013},
doi = {10.1117/12.2007153},
OPTURL = {http://dx.doi.org/10.1117/12.2007153},
eprint = {}
}

@article{McInerney2002251,
title = "Deformable organisms for automatic medical image analysis ",
longjournal = "Medical Image Analysis ",
journal = 	 {Med.\ Image Anal.},
volume = "6",
number = "3",
pages = "251--266",
year = "2002",
note = "Special Issue on Medical Image Computing and Computer-Assisted Intervention - \{MICCAI\} 2001 ",
issn = "1361-8415",
doi = "10.1016/S1361-8415(02)00083-X",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S136184150200083X",
author = "Tim McInerney and Ghassan Hamarneh and Martha Shenton and Demetri Terzopoulos",
keywords = "Medical image segmentation",
keywords = "Deformable models",
keywords = "Intelligent agents",
keywords = "Artificial life "
}

@article{Stille201327,
title = "{3D} reconstruction of {2D} fluorescence histology images and registration with in vivo {MR} images: Application in a rodent stroke model ",
journal = "Journal of Neuroscience Methods ",
volume = "219",
number = "1",
pages = "27 - 40",
year = "2013",
note = "",
issn = "0165-0270",
doi = "10.1016/j.jneumeth.2013.06.003",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S0165027013002203",
author = "Maik Stille and Edward J. Smith and William R. Crum and Michel Modo",
keywords = "Histology",
keywords = "Magnetic resonance imaging",
keywords = "Image registration",
keywords = "Rat",
keywords = "Stroke",
keywords = "Image analysis",
keywords = "Medical imaging "
}

@ARTICLE{6112228-,
author={Bagci, U. and Xinjian Chen and Udupa, J.K.},
longjournal={Medical Imaging, IEEE Transactions on},
journal = {IEEE T.\ Med.\ Imaging},
title={Hierarchical Scale-Based Multiobject Recognition of 3-D Anatomical Structures},
year={2012},
month={March},
volume={31},
number={3},
pages={777-789},
keywords={biological organs;biomedical MRI;computerised tomography;image recognition;image segmentation;medical image processing;object recognition;statistical analysis;3-D anatomical structures;abdominal CT scans;anatomy segmentation;foot MR images;hierarchical transfer function;image recognition;image segmentation;intensity weighted ball-scale object extraction;multiobject recognition;object recognition;statistical shape models;Anatomical structure;Estimation;Image recognition;Image segmentation;Shape;Three dimensional displays;Training;Active shape model;graph-cut;image segmentation;intensity standardization;local scale;object recognition;principal component analysis;three-dimensional (3-D) shape models;Algorithms;Foot;Humans;Imaging, Three-Dimensional;Magnetic Resonance Imaging;Models, Anatomic;Models, Biological;Pattern Recognition, Automated;Principal Component Analysis;Radiography, Abdominal;Reproducibility of Results;Tomography, X-Ray Computed},
doi={10.1109/TMI.2011.2180920},
ISSN={0278-0062},}

@article{Nikou200393-,
title = "A robust statistics-based global energy function for the alignment of serially acquired autoradiographic sections ",
journal = "Journal of Neuroscience Methods ",
volume = "124",
number = "1",
pages = "93 - 102",
year = "2003",
note = "",
issn = "0165-0270",
doi = "10.1016/S0165-0270(02)00369-2",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S0165027002003692",
author = "Christophoros Nikou and Fabrice Heitz and Astrid Nehlig and Izzie Jacques Namer and Jean-Paul Armspach",
keywords = "Serially acquired images",
keywords = "Alignment",
keywords = "Image registration",
keywords = "Pixel similarity measure",
keywords = "Robust estimation",
keywords = "Three dimensional reconstruction",
keywords = "Autoradiography "
}

@incollection{Ourselin,
year={2000},
isbn={978-3-540-41189-5},
Xbooktitle={Medical Image Computing and Computer-Assisted Intervention – MICCAI 2000},
volume={1935},
series={Lecture Notes in Computer Science},
Xeditor={Delp, ScottL. and DiGoia, AnthonyM. and Jaramaz, Branislav},
doi={10.1007/978-3-540-40899-4_57},
title={Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images},
url={http://eprints.ucl.ac.uk/70661/},
publisher={Springer Berlin Heidelberg},
author={Ourselin, S. and Roche, A. and Prima, S. and Ayache, N.},
pages={557-566}
}

@inproceedings{doi:10.1117/12.770219-,
author = {Bağci, Ulaş and Bai, Li},
title = {Registration of standardized histological images in feature space},
series = {Proc.\ SPIE 6914},
Xbooktitle = {Medical Imaging 2008: Image Processing},
OPTvolume = {6914},
number = {},
pages = {69142V-69142V-9},
abstract = {In this paper, we propose three novel and important methods for the registration of histological images for 3D reconstruction. First, possible intensity variations and nonstandardness in images are corrected by an intensity standardization process which maps the image scale into a standard scale where the similar intensities correspond to similar tissues meaning. Second, 2D histological images are mapped into a feature space where continuous variables are used as high confidence image features for accurate registration. Third, we propose an automatic best reference slice selection algorithm that improves reconstruction quality based on both image entropy and mean square error of the registration process. We demonstrate that the choice of reference slice has a significant impact on registration error, standardization, feature space and entropy information. After 2D histological slices are registered through an affine transformation with respect to an automatically chosen reference, the 3D volume is reconstructed by co-registering 2D slices elastically.},
year = {2008},
doi = {10.1117/12.770219},
URL = { http://dx.doi.org/10.1117/12.770219},
eprint = {}
}

@article{Chen20121778,
title = "Construction of a neuroanatomical shape complex atlas from 3D \{MRI\} brain structures ",
journal = "NeuroImage ",
volume = "60",
number = "3",
pages = "1778 - 1787",
year = "2012",
note = "",
issn = "1053-8119",
doi = "10.1016/j.neuroimage.2012.01.095",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S1053811912001127",
author = "Ting Chen and Anand Rangarajan and Stephan J. Eisenschenk and Baba C. Vemuri",
keywords = "Brain \{MRI\}",
keywords = "Shape complex atlas",
keywords = "Epilepsy",
keywords = "Lobectomy",
keywords = "Distance transform",
keywords = "Schrödinger equation",
keywords = "Karcher mean",
keywords = "Level set",
keywords = "Square-root density "
}

@article{Kim199731-,
title = "Mutual Information for Automated Unwarping of Rat Brain Autoradiographs ",
journal = "NeuroImage ",
volume = "5",
number = "1",
pages = "31--40",
year = "1997",
note = "",
issn = "1053-8119",
doi = "10.1006/nimg.1996.0251",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S1053811996902517",
author = "Boklye Kim and Jennifer L. Boes and Kirk A. Frey and Charles R. Meyer"
}

@incollection{graphcut,
year={2007},
isbn={978-3-540-74258-6},
Xbooktitle={Image Analysis and Recognition},
longvolume={4633},
series = {LNCS 4633},
longseries={Lecture Notes in Computer Science},
Xeditor={Kamel, Mohamed and Campilho, Aurélio},
doi={10.1007/978-3-540-74260-9_15},
title={Landmark-Based Non-rigid Registration Via Graph Cuts},
url={http://dx.doi.org/10.1007/978-3-540-74260-9_15},
publisher={Springer Berlin Heidelberg},
author={Lombaert, Herve and Sun, Yiyong and Cheriet, Farida},
pages={166-175}
}

@ARTICLE{5067284,
author={Cheung, W. and Hamarneh, G.},
longjournal={Image Processing, IEEE Transactions on},
title={$n$-{SIFT}:  $n$-Dimensional Scale Invariant Feature Transform},
journal = 	 {IEEE T.\ Image Process.},
year={2009},
OPTmonth={Sept},
volume={18},
number={9},
pages={2012-2021},
keywords={biomedical MRI;computer vision;computerised tomography;feature extraction;image matching;medical image processing;3D + time CT data;3D MRI images;automated multimodal medical image matching technique;computer vision;feature vector;multidimensional histogram;n-SIFT;n-dimensional scale invariant feature transform;salient feature matching;salient features extraction;scalar images;Biomedical image processing;difference of Gaussian;feature extraction;image matching;medical images;scale invariant feature transform (SIFT);Algorithms;Animals;Brain;Dogs;Heart;Humans;Image Processing, Computer-Assisted;Magnetic Resonance Imaging;Normal Distribution;Tomography, X-Ray Computed},
doi={10.1109/TIP.2009.2024578},
ISSN={1057-7149},}

@ARTICLE{5484596,
author={Bagci, U. and Li Bai},
longjournal={Medical Imaging, IEEE Transactions on},
journal = {IEEE T.\ Med.\ Imaging},
title={Automatic Best Reference Slice Selection for Smooth Volume Reconstruction of a Mouse Brain From Histological Images},
year={2010},
OPTmonth={Sept},
volume={29},
number={9},
pages={1688-1696},
keywords={biomedical optical imaging;brain;entropy;image reconstruction;image registration;iterative methods;medical image processing;automatic best reference slice selection algorithm;feature space;high fidelity image features;histological images;image entropy iterative assessment;image intensity variations;image registration;image space;intensity standardization process;mouse brain;reconstruction quality metric;smooth volume reconstruction;Diseases;Entropy;Image reconstruction;Iterative algorithms;Mean square error methods;Mice;Pathology;Permission;Spatial resolution;Standardization;Best reference slice;brain sectioning;histology images;image registration;intensity standardization;reference slice selection;smooth volume reconstruction;Algorithms;Animals;Brain;Histocytochemistry;Image Processing, Computer-Assisted;Magnetic Resonance Imaging;Mice},
doi={10.1109/TMI.2010.2050594},
ISSN={0278-0062},}

@article{Cifor2011197,
title = "Smoothness-guided {3-D} reconstruction of {2-D} histological images ",
journal = "NeuroImage ",
volume = "56",
number = "1",
pages = "197--211",
year = "2011",
OPTnote = "",
issn = "1053-8119",
doi = "10.1016/j.neuroimage.2011.01.060",
OPTurl = "http://www.sciencedirect.com/science/article/pii/S1053811911000966",
author = "Amalia Cifor and Li Bai and Alain Pitiot",
keywords = "Histology",
keywords = "Reconstruction",
keywords = "Curvature flow "
}

@ARTICLE{1260760,
author={Xie, Z. and Farin, G.E.},
longjournal={Visualization and Computer Graphics, IEEE Transactions on},
journal={IEEE T.\ Vis.\ Comput.\ Gr.},
title={Image registration using hierarchical {B}-splines},
year={2004},
OPTmonth={Jan},
volume={10},
number={1},
pages={85-94},
keywords={biomedical MRI;function approximation;image matching;image registration;image sequences;splines (mathematics);MRI;free-form deformation;hierarchical B-splines;image registration;iterative closest point;optical flow;scattered data approximation;shape modeling;Image motion analysis;Image registration;Iterative algorithms;Iterative closest point algorithm;Magnetic resonance imaging;Nonlinear distortion;Nonlinear optics;Optical distortion;Shape;Spline;Algorithms;Brain;Computer Graphics;Computer Simulation;Humans;Image Enhancement;Image Interpretation, Computer-Assisted;Imaging, Three-Dimensional;Information Storage and Retrieval;Magnetic Resonance Imaging;Numerical Analysis, Computer-Assisted;Pattern Recognition, Automated;Reproducibility of Results;Sensitivity and Specificity;Signal Processing, Computer-Assisted;Subtraction Technique;User-Computer Interface},
doi={10.1109/TVCG.2004.1260760},
ISSN={1077-2626},}

@ARTICLE{6112228,
author={Bagci, U. and Xinjian Chen and Udupa, J.K.},
longjournal={Medical Imaging, IEEE Transactions on},
journal = {IEEE T.\ Med.\ Imaging},
title={Hierarchical Scale-Based Multiobject Recognition of {3-D} Anatomical Structures},
year={2012},
OPTmonth={March},
volume={31},
number={3},
pages={777-789},
keywords={biological organs;biomedical MRI;computerised tomography;image recognition;image segmentation;medical image processing;object recognition;statistical analysis;3-D anatomical structures;abdominal CT scans;anatomy segmentation;foot MR images;hierarchical transfer function;image recognition;image segmentation;intensity weighted ball-scale object extraction;multiobject recognition;object recognition;statistical shape models;Anatomical structure;Estimation;Image recognition;Image segmentation;Shape;Three dimensional displays;Training;Active shape model;graph-cut;image segmentation;intensity standardization;local scale;object recognition;principal component analysis;three-dimensional (3-D) shape models;Algorithms;Foot;Humans;Imaging, Three-Dimensional;M

license: MIT

repository: Parrows/Parrows

license_type: permissive

repo_name: Parrows/Parrows

branch_name: refs/heads/master

extension: bib