import rasterio from pathlib import Path import numpy as np #areas = {'ATA_MV', 'BRA_SP', 'CHN_WS', 'ESP_EH', 'FIN_LM', 'GER_BN', 'IDN_SV', # 'KAZ_AC', 'KSA_WA', 'NAM_HF', 'NZL_KP', 'PHL_TA', 'USA_GC'} areas = {'ATA_MV'} path = Path("/home/sabrina/Documents/Tese/05_Dataset/MatchGeo-DEM-v1/data") print("=" * 70) print("MatchGeo-DEM NoData Fixer (Fixed)") print("=" * 70) for location in sorted(areas): loc_path = Path(path, f"{location}/{location}.tif") if not loc_path.exists(): print(f"\nāš ļø {location}: File not found — skipping") continue with rasterio.open(loc_path) as src: nodata = src.nodata # Check current state profile = src.profile is_bigtiff = profile.get('bigtiff', 'NO') is_tiled = profile.get('tiled', False) compress = profile.get('compress', 'NONE') block_x = profile.get('blockxsize', 0) block_y = profile.get('blockysize', 0) needs_fix = (nodata != -9999.0 or is_bigtiff != 'YES' or not is_tiled or compress != 'deflate') if not needs_fix: print(f"\nāœ… {location}: Already perfect (NoData={nodata}, BigTIFF={is_bigtiff}, Tiled={is_tiled}, Deflate={compress})") continue print(f"\nšŸ”§ {location}: Fixing...") print(f" Current: NoData={nodata}, BigTIFF={is_bigtiff}, Tiled={is_tiled}, Compress={compress}") # Read the data band = src.read(1) # Handle existing NoData values if nodata is not None and nodata != -9999.0: band[band == nodata] = -9999 print(f" Replaced old NoData ({nodata}) with -9999") # Handle NaN values if present if np.isnan(band).any(): nan_count = np.isnan(band).sum() band = np.nan_to_num(band, nan=-9999) print(f" Replaced {nan_count} NaN values with -9999") # Build profile from scratch to avoid conflicts # Use GTiff driver with explicit options kwargs = { 'driver': 'GTiff', 'height': band.shape[0], 'width': band.shape[1], 'count': 1, 'dtype': 'float32', 'crs': src.crs, 'transform': src.transform, 'nodata': -9999.0, 'tiled': True, 'blockxsize': 256, 'blockysize': 256, 'compress': 'deflate', 'predictor': 2, 'zlevel': 6, 'bigtiff': 'YES', 'interleave': 'band', } # Write the corrected file output_path = loc_path.with_suffix('.fixed.tif') try: with rasterio.open(output_path, 'w', **kwargs) as dst: dst.write(band, 1) # Verify with rasterio.open(output_path) as dst: v_nodata = dst.nodata v_bigtiff = dst.profile.get('bigtiff', 'NO') v_tiled = dst.profile.get('tiled', False) v_compress = dst.profile.get('compress', 'NONE') print(f" āœ… Fixed file: {output_path}") print(f" āœ… NoData: {v_nodata}") print(f" āœ… BigTIFF: {v_bigtiff}") print(f" āœ… Tiled: {v_tiled}") print(f" āœ… Compression: {v_compress}") except Exception as e: print(f" āŒ ERROR writing {location}: {e}") print(f" šŸ’” Try deleting {output_path} if it exists and re-run") if output_path.exists(): output_path.unlink() print("\n" + "=" * 70) print("Done! Check .fixed.tif files.") print("=" * 70)