4D-ATE / SUMMARY.md
pone7's picture
data: upload SUMMARY.md
9e1cc51 verified
|
Raw
History Blame Contribute Delete
17 kB

AET-Bench results

subset=4d backend=analytical task=T1

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
astra_cgls 10 28.23 ± 1.45 0.574 ± 0.020 1.87 ± 0.60 0.578 ± 0.051 36.4% ± 8.4% 46.0% ± 5.9% 0.403 ± 0.065 0.5 ± 0.3
astra_ossart 10 28.65 ± 1.10 0.575 ± 0.015 1.70 ± 0.52 0.585 ± 0.046 34.8% ± 10.9% 50.0% ± 7.2% 0.407 ± 0.095 0.6 ± 0.3
astra_sart 10 29.28 ± 1.28 0.604 ± 0.015 1.69 ± 0.52 0.573 ± 0.051 37.6% ± 11.3% 52.9% ± 6.8% 0.435 ± 0.096 1.1 ± 0.3
astra_sirt 10 29.28 ± 1.28 0.604 ± 0.015 1.69 ± 0.52 0.573 ± 0.051 37.6% ± 11.3% 52.9% ± 6.8% 0.435 ± 0.096 1.1 ± 0.3
dart 10 28.19 ± 1.29 0.758 ± 0.019 1.75 ± 0.05 0.721 ± 0.068 33.7% ± 8.7% 8.9% ± 2.1% 0.138 ± 0.025 2.2 ± 0.3
fbp 10 26.51 ± 1.23 0.577 ± 0.021 1.67 ± 0.53 0.579 ± 0.058 42.0% ± 12.8% 55.8% ± 6.4% 0.474 ± 0.105 1.2 ± 0.0
fista_tv 10 28.93 ± 1.06 0.560 ± 0.015 1.73 ± 0.51 0.522 ± 0.077 27.3% ± 12.8% 52.1% ± 14.9% 0.355 ± 0.143 1.7 ± 0.5
genfire 10 14.67 ± 0.75 0.505 ± 0.013 7.29 ± 1.77 0.810 ± 0.178 10.7% ± 11.3% 3.4% ± 1.5% 0.046 ± 0.027 70.4 ± 1.5
neat 10 27.03 ± 1.35 0.854 ± 0.018 4.52 ± 1.06 1.074 ± 0.050 1.7% ± 2.1% 2.9% ± 3.7% 0.021 ± 0.026 7.3 ± 3.4
sirt 10 29.97 ± 1.61 0.719 ± 0.015 1.63 ± 0.55 0.576 ± 0.049 40.0% ± 10.4% 54.4% ± 5.8% 0.457 ± 0.085 107.0 ± 25.8
tomopy_gridrec 10 19.06 ± 1.50 0.489 ± 0.018 0.637 ± 0.069 30.4% ± 11.9% 38.7% ± 7.8% 0.337 ± 0.104 0.2 ± 0.5
tomopy_mlem 10 0.55 ± 0.08 0.0% 0.0% 0.000 1.4 ± 0.4
wbp 10 26.51 ± 1.23 0.577 ± 0.021 1.67 ± 0.53 0.580 ± 0.057 41.7% ± 12.8% 55.7% ± 6.5% 0.472 ± 0.105 1.3 ± 0.1

subset=4d backend=analytical task=T7

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
fbp 10 27.07 ± 1.03 0.542 ± 0.022 1.53 ± 0.15 0.517 ± 0.062 47.9% ± 16.7% 61.3% ± 8.6% 0.532 ± 0.139 1.2 ± 0.0
fourdgs 10 29.57 ± 1.02 0.937 ± 0.012 1.89 ± 0.64 0.592 ± 0.099 25.9% ± 14.7% 50.4% ± 14.6% 0.336 ± 0.162 3.660 ± 1.323 16.4% ± 9.4% 541.4 ± 42.5
genfire 10 14.53 ± 0.81 0.485 ± 0.014 5.69 ± 2.07 0.863 ± 0.148 10.3% ± 10.6% 3.3% ± 1.5% 0.045 ± 0.026 64.1 ± 0.9
sirt 10 30.71 ± 1.57 0.684 ± 0.019 1.46 ± 0.17 0.518 ± 0.051 45.2% ± 14.1% 60.8% ± 7.2% 0.514 ± 0.118 107.6 ± 25.6
x2gaussian 10 29.68 ± 1.11 0.938 ± 0.012 1.98 ± 0.65 0.609 ± 0.095 23.0% ± 13.6% 47.4% ± 13.0% 0.303 ± 0.150 3.795 ± 1.309 14.8% ± 9.0% 662.2 ± 46.8

subset=bi backend=analytical task=T1

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
astra_cgls 30 21.94 ± 1.53 0.514 ± 0.056 3.86 ± 1.94 0.377 ± 0.062 48.7% ± 20.9% 78.3% ± 16.1% 0.591 ± 0.183 0.5 ± 0.1
astra_ossart 30 21.54 ± 1.43 0.395 ± 0.046 4.17 ± 1.84 0.386 ± 0.063 45.5% ± 21.2% 74.1% ± 20.1% 0.555 ± 0.198 0.6 ± 0.2
astra_sart 30 21.79 ± 1.48 0.445 ± 0.053 4.03 ± 1.93 0.378 ± 0.064 47.2% ± 21.4% 76.7% ± 18.1% 0.575 ± 0.192 1.0 ± 0.2
astra_sirt 30 21.79 ± 1.48 0.445 ± 0.053 4.03 ± 1.93 0.378 ± 0.064 47.2% ± 21.4% 76.7% ± 18.1% 0.575 ± 0.192 1.0 ± 0.2
dart 30 20.92 ± 1.44 0.605 ± 0.045 4.26 ± 1.73 0.673 ± 0.104 29.0% ± 13.7% 29.4% ± 11.0% 0.270 ± 0.079 2.3 ± 0.2
fbp 30 20.82 ± 1.31 0.409 ± 0.037 3.72 ± 1.92 0.355 ± 0.059 49.9% ± 19.9% 82.8% ± 15.3% 0.613 ± 0.172 1.2 ± 0.0
fista_tv 30 20.97 ± 1.35 0.413 ± 0.048 4.05 ± 1.91 0.309 ± 0.089 41.5% ± 18.6% 87.3% ± 10.3% 0.549 ± 0.185 1.2 ± 0.4
genfire 30 13.85 ± 0.85 0.484 ± 0.034 6.83 ± 2.79 0.687 ± 0.216 18.5% ± 13.3% 8.7% ± 2.7% 0.114 ± 0.048 65.8 ± 1.3
implicit_et 30 20.50 ± 1.88 0.765 ± 0.064 3.50 ± 1.31 0.991 ± 0.109 5.0% ± 6.6% 7.2% ± 5.7% 0.055 ± 0.062 72.9 ± 2.1
isonet 30 22.16 ± 1.60 0.773 ± 0.040 3.48 ± 1.85 0.369 ± 0.058 50.3% ± 20.7% 82.8% ± 14.3% 0.615 ± 0.175 90.6 ± 0.4
neat 30 20.64 ± 1.17 0.665 ± 0.063 5.38 ± 1.69 1.017 ± 0.099 2.2% ± 1.4% 4.0% ± 2.3% 0.027 ± 0.017 6.6 ± 2.0
r2gaussian 30 21.46 ± 1.48 0.767 ± 0.051 4.26 ± 1.60 0.774 ± 0.293 5.9% ± 12.2% 39.0% ± 32.4% 0.091 ± 0.165 609.0 ± 85.8
sirt 30 22.10 ± 1.57 0.678 ± 0.049 3.44 ± 1.90 0.368 ± 0.058 50.2% ± 20.8% 83.3% ± 13.9% 0.615 ± 0.175 85.7 ± 1.0
tomopy_gridrec 30 -inf ± nan 0.361 ± 0.094 29.0% ± 17.6% 53.8% ± 29.5% 0.375 ± 0.215 0.1 ± 0.3
tomopy_mlem 30 22.31 ± 1.58 0.836 ± 0.034 3.65 ± 2.26 0.408 ± 0.064 43.4% ± 19.9% 78.8% ± 13.3% 0.548 ± 0.174 1.3 ± 0.3
wbp 30 20.83 ± 1.31 0.408 ± 0.037 3.72 ± 1.92 0.358 ± 0.058 49.4% ± 20.0% 81.6% ± 15.8% 0.606 ± 0.175 1.3 ± 0.1
x2gaussian 30 21.32 ± 1.40 0.824 ± 0.042 4.09 ± 1.87 0.500 ± 0.230 13.7% ± 20.0% 75.6% ± 29.3% 0.200 ± 0.234 543.6 ± 56.5

subset=brownian_pt backend=analytical task=T1

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
astra_cgls 66 32.66 ± 1.60 0.715 ± 0.022 0.88 ± 0.11 0.379 ± 0.215 14.6% ± 7.5% 19.1% ± 13.4% 0.162 ± 0.095 0.5 ± 0.3
astra_ossart 66 30.28 ± 1.55 0.615 ± 0.019 0.88 ± 0.11 0.366 ± 0.171 14.1% ± 7.1% 18.5% ± 13.4% 0.156 ± 0.092 0.5 ± 0.1
astra_sart 66 31.59 ± 1.56 0.670 ± 0.019 0.88 ± 0.11 0.370 ± 0.201 14.3% ± 7.5% 19.2% ± 13.7% 0.161 ± 0.096 1.1 ± 0.3
astra_sirt 66 31.59 ± 1.56 0.670 ± 0.019 0.88 ± 0.11 0.370 ± 0.201 14.3% ± 7.5% 19.2% ± 13.7% 0.161 ± 0.096 1.1 ± 0.2
dart 66 27.49 ± 1.59 0.503 ± 0.049 1.25 ± 0.29 0.642 ± 0.179 13.6% ± 5.5% 20.3% ± 13.6% 0.156 ± 0.082 2.3 ± 0.2
fbp 66 23.90 ± 2.04 0.069 ± 0.037 7.28 ± 1.46 1.461 ± 0.497 0.7% ± 1.7% 1.0% ± 2.3% 0.008 ± 0.019 1.1 ± 0.0
fista_tv 66 29.11 ± 1.57 0.392 ± 0.074 0.91 ± 0.10 0.361 ± 0.127 11.1% ± 5.4% 13.9% ± 8.8% 0.121 ± 0.065 1.4 ± 0.4
genfire 66 12.05 ± 1.53 0.027 ± 0.008 8.53 ± 1.92 1.260 ± 0.213 1.8% ± 1.2% 2.3% ± 1.7% 0.019 ± 0.014 69.5 ± 1.4
implicit_et 66 25.40 ± 1.32 0.067 ± 0.026 49.40 ± 13.32 0.0% ± 0.1% 0.1% ± 0.5% 0.000 ± 0.001 80.3 ± 2.2
neat 66 25.48 ± 1.61 0.147 ± 0.044 7.40 ± 2.03 1.285 ± 0.137 2.1% ± 1.3% 3.6% ± 2.7% 0.025 ± 0.015 6.8 ± 1.5
sirt 16 22.92 ± 1.05 0.043 ± 0.013 9.33 ± 2.37 1.724 ± 0.102 0.0% ± 0.1% 0.1% ± 0.1% 0.001 ± 0.001 72.8 ± 0.2
tomopy_gridrec 66 22.75 ± 7.83 0.027 ± 0.017 0.4% ± 1.0% 0.6% ± 1.5% 0.005 ± 0.012 0.0 ± 0.2
tomopy_mlem 66 25.61 ± 1.85 0.137 ± 0.048 6.25 ± 1.45 1.539 ± 0.478 0.6% ± 1.3% 0.8% ± 2.2% 0.007 ± 0.016 1.1 ± 0.2
wbp 66 23.91 ± 2.04 0.069 ± 0.037 7.28 ± 1.46 1.457 ± 0.493 0.7% ± 1.7% 1.0% ± 2.4% 0.008 ± 0.019 1.1 ± 0.1

subset=mono backend=analytical task=T1

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
astra_cgls 50 31.34 ± 1.16 0.648 ± 0.018 1.28 ± 0.07 0.369 ± 0.074 86.0% ± 14.7% 86.1% ± 14.6% 0.860 ± 0.146 0.5 ± 0.3
astra_ossart 50 28.00 ± 1.29 0.496 ± 0.027 1.44 ± 0.07 0.373 ± 0.077 84.8% ± 15.7% 85.0% ± 15.4% 0.849 ± 0.156 0.6 ± 0.3
astra_sart 50 29.50 ± 1.22 0.553 ± 0.028 1.33 ± 0.05 0.371 ± 0.076 85.8% ± 15.1% 85.9% ± 14.9% 0.859 ± 0.150 1.0 ± 0.3
astra_sirt 50 29.50 ± 1.22 0.553 ± 0.028 1.33 ± 0.05 0.371 ± 0.076 85.8% ± 15.1% 85.9% ± 14.9% 0.859 ± 0.150 1.0 ± 0.3
dart 50 25.39 ± 0.82 0.675 ± 0.028 1.80 ± 0.07 0.541 ± 0.090 52.8% ± 17.5% 38.3% ± 8.3% 0.436 ± 0.107 2.2 ± 0.3
fbp 50 23.73 ± 1.00 0.485 ± 0.014 1.33 ± 0.05 0.358 ± 0.079 87.5% ± 13.4% 87.6% ± 13.3% 0.876 ± 0.134 1.2 ± 0.0
fista_tv 50 26.53 ± 2.49 0.507 ± 0.036 1.36 ± 0.24 95.1% ± 15.3% 97.7% ± 13.9% 0.962 ± 0.143 2.8 ± 8.5
genfire 50 13.70 ± 1.10 0.499 ± 0.030 3.58 ± 1.88 0.502 ± 0.176 35.3% ± 22.3% 9.9% ± 2.5% 0.142 ± 0.055 69.7 ± 1.3
implicit_et 50 19.71 ± 2.22 0.768 ± 0.048 2.85 ± 3.20 10.2% ± 13.9% 8.4% ± 7.9% 0.086 ± 0.103 72.1 ± 8.4
isonet 50 31.06 ± 1.55 0.893 ± 0.013 1.22 ± 0.06 0.355 ± 0.076 88.6% ± 12.7% 88.7% ± 12.6% 0.886 ± 0.126 90.7 ± 0.7
neat 50 19.36 ± 0.97 0.672 ± 0.049 4.44 ± 0.39 1.072 ± 0.040 3.3% ± 1.9% 5.0% ± 2.1% 0.039 ± 0.019 6.7 ± 2.1
r2gaussian 50 23.16 ± 2.25 0.815 ± 0.073 1.89 ± 0.66 0.707 ± 0.338 19.9% ± 30.2% 53.1% ± 30.4% 0.238 ± 0.323 687.6 ± 209.7
sirt 50 30.05 ± 1.36 0.798 ± 0.009 1.16 ± 0.04 0.356 ± 0.075 88.6% ± 12.8% 88.7% ± 12.6% 0.887 ± 0.127 88.8 ± 23.5
tomopy_gridrec 50 -inf ± nan 0.394 ± 0.037 0.488 ± 0.105 55.1% ± 30.7% 57.9% ± 30.5% 0.563 ± 0.305 0.1 ± 0.3
tomopy_mlem 50 30.89 ± 1.78 0.946 ± 0.013 1.07 ± 0.04 0.387 ± 0.077 81.2% ± 15.5% 81.5% ± 15.1% 0.814 ± 0.153 1.2 ± 0.3
wbp 50 23.80 ± 0.97 0.485 ± 0.013 1.34 ± 0.05 0.365 ± 0.080 86.5% ± 14.5% 86.6% ± 14.3% 0.865 ± 0.144 1.3 ± 0.1
x2gaussian 50 24.14 ± 3.79 0.850 ± 0.128 1.69 ± 1.54 0.508 ± 0.244 30.5% ± 39.7% 72.1% ± 25.9% 0.343 ± 0.386 599.5 ± 89.8

subset=multislice backend=analytical task=T1

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
astra_cgls 3 17.88 0.038 8.24 ± 8.78 0.4% ± 0.4% 0.6% ± 0.6% 0.004 ± 0.005 1.3 ± 0.1
astra_ossart 3 19.99 ± 0.37 0.407 ± 0.376 0.4% ± 0.4% 0.7% ± 0.8% 0.005 ± 0.006 1.4 ± 0.1
astra_sart 3 19.89 ± 0.48 0.409 ± 0.374 0.2% ± 0.2% 0.3% ± 0.4% 0.002 ± 0.003 1.9 ± 0.2
astra_sirt 3 19.89 ± 0.48 0.409 ± 0.374 0.2% ± 0.2% 0.3% ± 0.4% 0.002 ± 0.003 1.9 ± 0.1
dart 3 20.56 ± 0.35 0.466 ± 0.309 0.5% ± 0.6% 0.6% ± 0.7% 0.006 ± 0.007 3.1 ± 0.3
fbp 3 19.93 ± 0.35 0.392 ± 0.311 0.6% ± 0.6% 1.2% ± 1.1% 0.008 ± 0.008 1.5 ± 0.3
fista_tv 3 20.28 ± 0.16 0.428 ± 0.353 0.2% ± 0.2% 0.5% ± 0.6% 0.003 ± 0.003 3.8 ± 0.4
genfire 3 16.27 ± 4.64 0.393 ± 0.393 2.0% ± 2.3% 2.0% ± 2.3% 0.020 ± 0.023 83.4 ± 19.2
implicit_et 3 18.42 ± 2.18 0.561 ± 0.200 0.3% ± 0.5% 1.1% ± 2.3% 0.004 ± 0.009 97.0 ± 21.6
isonet 3 20.93 ± 0.76 0.553 ± 0.208 0.2% ± 0.2% 0.3% ± 0.4% 0.002 ± 0.003 90.0 ± 10.6
neat 3 19.68 ± 0.73 0.539 ± 0.225 0.8% ± 0.9% 1.0% ± 1.2% 0.009 ± 0.010 18.9 ± 2.4
r2gaussian 3 21.15 ± 1.18 0.548 ± 0.027 28.23 ± 14.34 1.100 ± 0.039 0.8% ± 0.2% 1.7% ± 0.3% 0.010 ± 0.003 222.3 ± 146.7
sirt 3 19.97 ± 0.40 0.459 ± 0.317 0.4% ± 0.4% 0.8% ± 0.9% 0.005 ± 0.006 79.9 ± 12.8
tomopy_gridrec 3 21.17 ± 1.03 0.588 ± 0.168 0.2% ± 0.2% 0.3% ± 0.4% 0.002 ± 0.003 1.9 ± 0.2
tomopy_mlem 3 22.05 0.524 8.24 ± 8.78 0.0% 0.0% 0.000 3.0 ± 0.8
wbp 3 19.94 ± 0.42 0.448 ± 0.329 0.5% ± 0.6% 1.0% ± 1.2% 0.007 ± 0.008 1.5 ± 0.2
x2gaussian 3 21.28 ± 1.13 0.627 ± 0.016 14.69 ± 1.37 1.100 ± 0.057 0.5% ± 0.4% 1.2% ± 0.8% 0.007 ± 0.005 274.0 ± 132.8

subset=real backend=analytical task=T1

Method n PSNR ↑ SSIM ↑ FSC@0.143 Å ↓ RMSD Å ↓ Recall ↑ Precision ↑ F1 ↑ Traj RMSD Å ↓ Atom ID persist ↑ Runtime (s)
astra_cgls 4 17.22 ± 5.10 0.135 ± 0.033 42.72 ± 29.48 1.886 ± 0.543 1.1% ± 0.1% 1.8% ± 0.4% 0.013 ± 0.002 1.9 ± 1.0
astra_ossart 4 15.91 ± 3.76 0.116 ± 0.050 35.95 ± 33.95 1.874 ± 0.524 1.2% ± 0.1% 2.1% ± 0.2% 0.015 ± 0.001 2.4 ± 1.0
astra_sirt 4 16.25 ± 4.09 0.117 ± 0.046 35.95 ± 33.95 1.896 ± 0.568 1.2% ± 0.3% 2.1% ± 0.5% 0.015 ± 0.003 3.2 ± 1.0
dart 4 15.06 ± 3.66 0.191 ± 0.078 34.47 ± 34.86 1.921 ± 0.632 1.4% ± 0.7% 1.5% ± 1.0% 0.014 ± 0.008 10.8 ± 0.2
fbp 4 16.42 ± 4.37 0.238 ± 0.041 27.77 ± 16.25 1.901 ± 0.576 1.3% ± 0.1% 2.2% ± 0.2% 0.016 ± 0.001 7.4 ± 0.6
fista_tv 4 16.72 ± 4.46 0.153 ± 0.033 35.21 ± 34.42 1.891 ± 0.559 0.6% ± 0.4% 2.5% ± 0.7% 0.009 ± 0.005 29.4 ± 9.0
genfire 4 10.35 ± 0.48 0.282 ± 0.060 14.14 ± 10.76 1.856 ± 0.576 2.2% ± 1.6% 1.5% ± 0.8% 0.018 ± 0.011 569.0 ± 4.8
implicit_et 4 10.75 ± 1.07 0.413 ± 0.029 22.68 ± 13.87 1.983 ± 0.731 0.9% ± 0.3% 2.7% ± 1.2% 0.013 ± 0.004 85.1 ± 2.0
isonet 4 18.36 ± 5.63 0.380 ± 0.037 26.53 ± 17.13 1.896 ± 0.568 1.5% ± 0.1% 2.5% ± 0.5% 0.018 ± 0.002 594.9 ± 30.8
neat 4 16.67 ± 5.11 0.470 ± 0.093 8.75 ± 4.76 1.795 ± 0.448 1.4% ± 0.7% 3.9% ± 0.9% 0.020 ± 0.009 16.6 ± 0.3
r2gaussian 4 13.57 ± 1.98 0.407 ± 0.051 18.79 ± 12.29 2.173 ± 1.144 0.0% ± 0.0% 2.5% ± 2.5% 0.000 ± 0.000 2072.4 ± 597.4
sirt 4 17.48 ± 4.94 0.313 ± 0.051 26.53 ± 17.13 1.856 ± 0.480 1.5% ± 0.3% 2.9% ± 0.7% 0.020 ± 0.004 534.4 ± 30.0
tomopy_gridrec 3 20.20 ± 2.61 0.247 ± 0.016 1.616 ± 0.083 0.9% ± 0.2% 1.5% ± 0.7% 0.011 ± 0.004 1.9 ± 0.1
tomopy_mlem 4 17.87 ± 5.68 0.478 ± 0.008 34.47 ± 34.86 1.886 ± 0.476 1.3% ± 0.8% 3.0% ± 0.7% 0.017 ± 0.011 11.1 ± 0.4
wbp 4 16.45 ± 4.34 0.238 ± 0.041 27.77 ± 16.25 1.877 ± 0.528 1.4% ± 0.1% 2.4% ± 0.2% 0.018 ± 0.002 7.4 ± 0.7
x2gaussian 4 14.41 ± 0.91 0.467 ± 0.016 16.28 ± 3.70 1.866 ± 0.474 0.0% ± 0.0% 4.1% ± 2.2% 0.001 ± 0.000 1976.5 ± 541.9